AutoCloner

Multiple sequence alignment - TraesCS1B01G324900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G324900	chr1B	100.000	2291	0	0	1	2291	550680009	550682299	0.000000e+00	4231.0
1	TraesCS1B01G324900	chr1B	90.084	595	35	6	1388	1979	550947993	550948566	0.000000e+00	750.0
2	TraesCS1B01G324900	chr1B	85.420	583	78	4	1388	1967	550390519	550391097	1.170000e-167	599.0
3	TraesCS1B01G324900	chr1B	93.204	309	16	3	1703	2008	550965365	550965671	1.250000e-122	449.0
4	TraesCS1B01G324900	chr1B	90.086	232	20	3	2004	2233	550965856	550966086	4.780000e-77	298.0
5	TraesCS1B01G324900	chr1B	88.406	69	8	0	1403	1471	550373553	550373621	1.460000e-12	84.2
6	TraesCS1B01G324900	chr1B	97.674	43	1	0	2238	2280	550703177	550703219	8.780000e-10	75.0
7	TraesCS1B01G324900	chr6B	98.268	1386	21	3	1	1385	412284212	412282829	0.000000e+00	2423.0
8	TraesCS1B01G324900	chr6B	96.691	1390	39	4	1	1384	708043398	708042010	0.000000e+00	2305.0
9	TraesCS1B01G324900	chr2B	97.180	1383	36	3	1	1380	383360205	383361587	0.000000e+00	2335.0
10	TraesCS1B01G324900	chr3A	95.382	1386	58	4	1	1380	11778404	11779789	0.000000e+00	2200.0
11	TraesCS1B01G324900	chr3A	93.889	180	11	0	2058	2237	460439910	460440089	2.900000e-69	272.0
12	TraesCS1B01G324900	chr1A	95.169	1387	62	4	1	1386	373759644	373761026	0.000000e+00	2185.0
13	TraesCS1B01G324900	chr1A	87.997	1383	163	3	1	1380	560399158	560400540	0.000000e+00	1631.0
14	TraesCS1B01G324900	chr1A	87.129	606	40	12	1388	1988	505194213	505194785	0.000000e+00	652.0
15	TraesCS1B01G324900	chr1A	80.214	187	32	4	1400	1584	505139832	505140015	3.970000e-28	135.0
16	TraesCS1B01G324900	chr2A	94.809	1387	66	5	1	1386	671343199	671341818	0.000000e+00	2158.0
17	TraesCS1B01G324900	chr3D	88.584	1384	155	3	1	1382	598596180	598597562	0.000000e+00	1677.0
18	TraesCS1B01G324900	chr4A	88.176	1387	157	6	1	1385	67263559	67262178	0.000000e+00	1646.0
19	TraesCS1B01G324900	chr4A	93.923	181	11	0	2057	2237	362149314	362149494	8.060000e-70	274.0
20	TraesCS1B01G324900	chr4A	93.889	180	11	0	2058	2237	502655106	502655285	2.900000e-69	272.0
21	TraesCS1B01G324900	chr1D	92.929	594	28	5	1388	1978	409015321	409015903	0.000000e+00	852.0
22	TraesCS1B01G324900	chr1D	82.703	370	54	6	1388	1752	408924064	408924428	1.020000e-83	320.0
23	TraesCS1B01G324900	chr5D	94.444	180	10	0	2058	2237	235894972	235895151	6.230000e-71	278.0
24	TraesCS1B01G324900	chr5A	94.444	180	10	0	2058	2237	352900828	352901007	6.230000e-71	278.0
25	TraesCS1B01G324900	chr4D	94.886	176	9	0	2058	2233	150934105	150934280	2.240000e-70	276.0
26	TraesCS1B01G324900	chr7D	93.889	180	11	0	2058	2237	383164811	383164990	2.900000e-69	272.0
27	TraesCS1B01G324900	chr7D	97.674	43	1	0	2238	2280	63737571	63737529	8.780000e-10	75.0
28	TraesCS1B01G324900	chr2D	93.889	180	11	0	2058	2237	178368274	178368453	2.900000e-69	272.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G324900	chr1B	550680009	550682299	2290	False	4231.0	4231	100.000	1	2291	1	chr1B.!!$F3	2290
1	TraesCS1B01G324900	chr1B	550947993	550948566	573	False	750.0	750	90.084	1388	1979	1	chr1B.!!$F5	591
2	TraesCS1B01G324900	chr1B	550390519	550391097	578	False	599.0	599	85.420	1388	1967	1	chr1B.!!$F2	579
3	TraesCS1B01G324900	chr1B	550965365	550966086	721	False	373.5	449	91.645	1703	2233	2	chr1B.!!$F6	530
4	TraesCS1B01G324900	chr6B	412282829	412284212	1383	True	2423.0	2423	98.268	1	1385	1	chr6B.!!$R1	1384
5	TraesCS1B01G324900	chr6B	708042010	708043398	1388	True	2305.0	2305	96.691	1	1384	1	chr6B.!!$R2	1383
6	TraesCS1B01G324900	chr2B	383360205	383361587	1382	False	2335.0	2335	97.180	1	1380	1	chr2B.!!$F1	1379
7	TraesCS1B01G324900	chr3A	11778404	11779789	1385	False	2200.0	2200	95.382	1	1380	1	chr3A.!!$F1	1379
8	TraesCS1B01G324900	chr1A	373759644	373761026	1382	False	2185.0	2185	95.169	1	1386	1	chr1A.!!$F1	1385
9	TraesCS1B01G324900	chr1A	560399158	560400540	1382	False	1631.0	1631	87.997	1	1380	1	chr1A.!!$F4	1379
10	TraesCS1B01G324900	chr1A	505194213	505194785	572	False	652.0	652	87.129	1388	1988	1	chr1A.!!$F3	600
11	TraesCS1B01G324900	chr2A	671341818	671343199	1381	True	2158.0	2158	94.809	1	1386	1	chr2A.!!$R1	1385
12	TraesCS1B01G324900	chr3D	598596180	598597562	1382	False	1677.0	1677	88.584	1	1382	1	chr3D.!!$F1	1381
13	TraesCS1B01G324900	chr4A	67262178	67263559	1381	True	1646.0	1646	88.176	1	1385	1	chr4A.!!$R1	1384
14	TraesCS1B01G324900	chr1D	409015321	409015903	582	False	852.0	852	92.929	1388	1978	1	chr1D.!!$F2	590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
589	599	1.403647	CGGTTCGATTGGCTCTACACA	60.404	52.381	0.0	0.0	0.0	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2056	2285	0.107017	CCCCACTATGACCAGCCTTG	60.107	60.0	0.0	0.0	0.0	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
272	279	8.034215	CACTGGTGGAAAATGCAAGATAAATTA	58.966	33.333	0.00	0.00	0.00	1.40
589	599	1.403647	CGGTTCGATTGGCTCTACACA	60.404	52.381	0.00	0.00	0.00	3.72
648	658	2.509052	TCACTGTTGAACACCTCTCG	57.491	50.000	0.00	0.00	0.00	4.04
687	698	2.114616	GAGAGGGTCTCACATGTCCAT	58.885	52.381	0.00	0.00	42.90	3.41
1039	1051	2.219458	GTCTCCATGATGTGCATCCTG	58.781	52.381	9.39	9.45	37.02	3.86
1355	1368	8.974238	TCTCTCTTAATCAATGAAAATGGCAAT	58.026	29.630	0.00	0.00	0.00	3.56
1357	1370	9.947433	TCTCTTAATCAATGAAAATGGCAATTT	57.053	25.926	0.00	0.00	37.61	1.82
1490	1503	1.794714	ATGGATAGAACAGGCGAGGT	58.205	50.000	0.00	0.00	0.00	3.85
1588	1602	0.037975	AGCGCCAAAGAAAATGCTGG	60.038	50.000	2.29	0.00	0.00	4.85
1605	1619	3.010420	GCTGGAAAACTAGCTACCCAAG	58.990	50.000	0.00	0.00	36.99	3.61
1724	1738	3.260884	TGTGGTAGCTAGTAGCAAAGCTT	59.739	43.478	23.77	4.80	46.82	3.74
1781	1798	1.075542	CCGCAGCGTGAAATAACAGA	58.924	50.000	15.05	0.00	0.00	3.41
1790	1807	4.737765	GCGTGAAATAACAGAAAAAGTGCA	59.262	37.500	0.00	0.00	0.00	4.57
1821	1851	2.279517	GCGATGGGACGTAGGCAG	60.280	66.667	0.00	0.00	35.59	4.85
1831	1861	1.745489	CGTAGGCAGGAAACCAGGC	60.745	63.158	0.00	0.00	0.00	4.85
1833	1863	0.034089	GTAGGCAGGAAACCAGGCAT	60.034	55.000	9.07	3.79	34.42	4.40
1944	1984	2.351350	CCTACGGCAAATCAACACAACC	60.351	50.000	0.00	0.00	0.00	3.77
1947	1987	0.034756	GGCAAATCAACACAACCCCC	59.965	55.000	0.00	0.00	0.00	5.40
2038	2267	2.362077	CCATTGATTCGTTTCCCATCCC	59.638	50.000	0.00	0.00	0.00	3.85
2050	2279	1.611419	CCATCCCATGGCTGTGAGT	59.389	57.895	6.09	0.00	44.70	3.41
2055	2284	0.742281	CCCATGGCTGTGAGTTCTCG	60.742	60.000	6.09	0.00	0.00	4.04
2056	2285	1.364626	CCATGGCTGTGAGTTCTCGC	61.365	60.000	0.00	6.45	0.00	5.03
2068	2298	0.674895	GTTCTCGCAAGGCTGGTCAT	60.675	55.000	0.00	0.00	38.47	3.06
2073	2303	1.091771	CGCAAGGCTGGTCATAGTGG	61.092	60.000	0.00	0.00	0.00	4.00
2074	2304	0.749454	GCAAGGCTGGTCATAGTGGG	60.749	60.000	0.00	0.00	0.00	4.61
2087	2317	5.839606	GGTCATAGTGGGGAGTAACTTAGAT	59.160	44.000	0.00	0.00	0.00	1.98
2121	2351	6.428771	TGCTTTTGTTACTAGTCCATGTTACC	59.571	38.462	0.00	0.00	0.00	2.85
2123	2353	7.572539	GCTTTTGTTACTAGTCCATGTTACCAC	60.573	40.741	0.00	0.00	0.00	4.16
2124	2354	6.675413	TTGTTACTAGTCCATGTTACCACT	57.325	37.500	0.00	0.00	0.00	4.00
2125	2355	6.032956	TGTTACTAGTCCATGTTACCACTG	57.967	41.667	0.00	0.00	0.00	3.66
2132	2362	6.313519	AGTCCATGTTACCACTGTCATAAT	57.686	37.500	0.00	0.00	0.00	1.28
2135	2365	4.580167	CCATGTTACCACTGTCATAATGGG	59.420	45.833	0.00	0.00	37.86	4.00
2179	2409	6.830324	AGCATACAAGCCTTCATTAATTGAGA	59.170	34.615	0.00	0.00	33.09	3.27
2199	2429	7.718334	TGAGACATAGACTCATTTTACCTCA	57.282	36.000	0.00	0.00	39.10	3.86
2211	2441	5.943416	TCATTTTACCTCAGGGTGTGTTATG	59.057	40.000	0.00	0.00	46.75	1.90
2212	2442	4.986054	TTTACCTCAGGGTGTGTTATGT	57.014	40.909	0.00	0.00	46.75	2.29
2216	2446	3.649023	ACCTCAGGGTGTGTTATGTTACA	59.351	43.478	0.00	0.00	45.43	2.41
2217	2447	4.103469	ACCTCAGGGTGTGTTATGTTACAA	59.897	41.667	0.00	0.00	45.43	2.41
2250	2480	8.590719	TTATGTTATCACTGTTAAACACGTCA	57.409	30.769	0.00	0.00	34.89	4.35
2251	2481	6.905544	TGTTATCACTGTTAAACACGTCAA	57.094	33.333	0.00	0.00	0.00	3.18
2252	2482	6.707711	TGTTATCACTGTTAAACACGTCAAC	58.292	36.000	0.00	0.00	0.00	3.18
2253	2483	6.313164	TGTTATCACTGTTAAACACGTCAACA	59.687	34.615	0.00	0.00	0.00	3.33
2254	2484	7.011576	TGTTATCACTGTTAAACACGTCAACAT	59.988	33.333	0.00	0.00	32.14	2.71
2255	2485	5.150342	TCACTGTTAAACACGTCAACATG	57.850	39.130	0.00	0.00	32.14	3.21
2256	2486	4.632251	TCACTGTTAAACACGTCAACATGT	59.368	37.500	0.00	0.00	32.14	3.21
2257	2487	4.961551	CACTGTTAAACACGTCAACATGTC	59.038	41.667	0.00	0.00	32.14	3.06
2258	2488	4.632251	ACTGTTAAACACGTCAACATGTCA	59.368	37.500	0.00	0.00	32.14	3.58
2259	2489	4.899516	TGTTAAACACGTCAACATGTCAC	58.100	39.130	0.00	0.00	0.00	3.67
2260	2490	2.730183	AAACACGTCAACATGTCACG	57.270	45.000	22.33	22.33	39.48	4.35
2261	2491	0.303493	AACACGTCAACATGTCACGC	59.697	50.000	23.36	5.24	37.02	5.34
2262	2492	0.529773	ACACGTCAACATGTCACGCT	60.530	50.000	23.36	12.28	37.02	5.07
2263	2493	1.269361	ACACGTCAACATGTCACGCTA	60.269	47.619	23.36	0.00	37.02	4.26
2264	2494	1.124297	CACGTCAACATGTCACGCTAC	59.876	52.381	23.36	6.27	37.02	3.58
2265	2495	1.269361	ACGTCAACATGTCACGCTACA	60.269	47.619	23.36	0.00	37.02	2.74
2266	2496	1.992667	CGTCAACATGTCACGCTACAT	59.007	47.619	15.11	0.00	40.75	2.29
2273	2503	2.509052	TGTCACGCTACATGATAGGC	57.491	50.000	0.00	0.00	0.00	3.93
2276	2506	4.653555	CGCTACATGATAGGCGCA	57.346	55.556	10.83	0.00	41.08	6.09
2277	2507	3.128259	CGCTACATGATAGGCGCAT	57.872	52.632	10.83	3.98	41.08	4.73
2278	2508	0.994995	CGCTACATGATAGGCGCATC	59.005	55.000	10.83	5.07	41.08	3.91
2279	2509	1.403382	CGCTACATGATAGGCGCATCT	60.403	52.381	10.83	0.00	41.08	2.90
2280	2510	2.693069	GCTACATGATAGGCGCATCTT	58.307	47.619	10.83	0.00	0.00	2.40
2281	2511	2.414481	GCTACATGATAGGCGCATCTTG	59.586	50.000	10.83	14.98	36.59	3.02
2282	2512	2.916702	ACATGATAGGCGCATCTTGA	57.083	45.000	22.47	0.00	35.27	3.02
2283	2513	3.413846	ACATGATAGGCGCATCTTGAT	57.586	42.857	22.47	3.00	35.27	2.57
2284	2514	4.541973	ACATGATAGGCGCATCTTGATA	57.458	40.909	22.47	0.00	35.27	2.15
2285	2515	4.502016	ACATGATAGGCGCATCTTGATAG	58.498	43.478	22.47	4.34	35.27	2.08
2286	2516	4.221482	ACATGATAGGCGCATCTTGATAGA	59.779	41.667	22.47	0.00	35.27	1.98
2287	2517	4.871933	TGATAGGCGCATCTTGATAGAA	57.128	40.909	10.83	0.00	33.20	2.10
2288	2518	4.814147	TGATAGGCGCATCTTGATAGAAG	58.186	43.478	10.83	0.00	33.20	2.85
2289	2519	1.876322	AGGCGCATCTTGATAGAAGC	58.124	50.000	10.83	0.00	40.74	3.86
2290	2520	1.139654	AGGCGCATCTTGATAGAAGCA	59.860	47.619	10.83	0.00	43.51	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
272	279	1.072159	GACTTGCACACCTGCTCCT	59.928	57.895	0.00	0.00	44.57	3.69
648	658	3.669536	CTCCCAAAGAGAGACAAACTCC	58.330	50.000	0.00	0.00	46.50	3.85
1039	1051	1.521457	TCGCATCACTCCAATCGGC	60.521	57.895	0.00	0.00	0.00	5.54
1376	1389	6.550108	TGGCCGGGCACTTTATTATTTATTTA	59.450	34.615	29.27	0.00	0.00	1.40
1380	1393	3.633065	GTGGCCGGGCACTTTATTATTTA	59.367	43.478	44.03	12.76	0.00	1.40
1384	1397	3.178325	GTGGCCGGGCACTTTATTA	57.822	52.632	44.03	15.09	0.00	0.98
1385	1398	4.012138	GTGGCCGGGCACTTTATT	57.988	55.556	44.03	0.00	0.00	1.40
1490	1503	3.931247	CACGGTCGACCAACCCCA	61.931	66.667	32.80	0.00	35.79	4.96
1605	1619	1.804151	TGACATCGCTTGTTTACCTGC	59.196	47.619	0.00	0.00	39.18	4.85
1724	1738	2.905996	AACCCCGCAGCAAGATGGA	61.906	57.895	0.00	0.00	0.00	3.41
1768	1785	5.108254	GCTGCACTTTTTCTGTTATTTCACG	60.108	40.000	0.00	0.00	0.00	4.35
1781	1798	1.322442	GTCCTCCAGCTGCACTTTTT	58.678	50.000	8.66	0.00	0.00	1.94
1790	1807	2.068821	ATCGCCATGTCCTCCAGCT	61.069	57.895	0.00	0.00	0.00	4.24
1821	1851	1.044790	CCCCATCATGCCTGGTTTCC	61.045	60.000	11.73	0.00	31.44	3.13
1831	1861	1.074423	CCTAGCTGGCCCCATCATG	59.926	63.158	0.00	0.00	0.00	3.07
1890	1930	2.742372	GCCGCGATCACAACTGGT	60.742	61.111	8.23	0.00	0.00	4.00
1944	1984	2.915604	AGATGATATTACTGGCCAGGGG	59.084	50.000	35.42	13.63	0.00	4.79
1947	1987	4.042062	TCCCAAGATGATATTACTGGCCAG	59.958	45.833	31.60	31.60	0.00	4.85
2038	2267	0.671472	TGCGAGAACTCACAGCCATG	60.671	55.000	2.78	0.00	0.00	3.66
2043	2272	0.320247	AGCCTTGCGAGAACTCACAG	60.320	55.000	1.22	0.00	0.00	3.66
2050	2279	0.901827	TATGACCAGCCTTGCGAGAA	59.098	50.000	1.22	0.00	0.00	2.87
2055	2284	0.749454	CCCACTATGACCAGCCTTGC	60.749	60.000	0.00	0.00	0.00	4.01
2056	2285	0.107017	CCCCACTATGACCAGCCTTG	60.107	60.000	0.00	0.00	0.00	3.61
2068	2298	9.413734	GTTACTAATCTAAGTTACTCCCCACTA	57.586	37.037	0.00	0.00	0.00	2.74
2073	2303	8.422566	AGCATGTTACTAATCTAAGTTACTCCC	58.577	37.037	0.00	0.00	31.82	4.30
2074	2304	9.819267	AAGCATGTTACTAATCTAAGTTACTCC	57.181	33.333	0.00	0.00	31.82	3.85
2087	2317	9.211485	GGACTAGTAACAAAAGCATGTTACTAA	57.789	33.333	29.46	20.88	36.12	2.24
2147	2377	7.592885	AATGAAGGCTTGTATGCTATCATTT	57.407	32.000	3.46	0.00	40.99	2.32
2153	2383	7.992608	TCTCAATTAATGAAGGCTTGTATGCTA	59.007	33.333	3.46	0.00	37.67	3.49
2155	2385	6.914757	GTCTCAATTAATGAAGGCTTGTATGC	59.085	38.462	3.46	0.00	37.67	3.14
2179	2409	6.240549	CCCTGAGGTAAAATGAGTCTATGT	57.759	41.667	0.00	0.00	0.00	2.29
2199	2429	9.914834	ATATGTTATTGTAACATAACACACCCT	57.085	29.630	20.21	5.19	43.71	4.34
2233	2463	4.632251	ACATGTTGACGTGTTTAACAGTGA	59.368	37.500	0.00	0.00	43.01	3.41
2234	2464	4.904116	ACATGTTGACGTGTTTAACAGTG	58.096	39.130	0.00	0.00	43.01	3.66
2235	2465	4.632251	TGACATGTTGACGTGTTTAACAGT	59.368	37.500	10.09	0.00	45.32	3.55
2236	2466	4.961551	GTGACATGTTGACGTGTTTAACAG	59.038	41.667	10.09	0.00	45.32	3.16
2237	2467	4.492732	CGTGACATGTTGACGTGTTTAACA	60.493	41.667	18.37	0.00	45.32	2.41
2238	2468	3.957535	CGTGACATGTTGACGTGTTTAAC	59.042	43.478	18.37	8.46	45.32	2.01
2239	2469	3.544440	GCGTGACATGTTGACGTGTTTAA	60.544	43.478	24.02	0.00	45.32	1.52
2240	2470	2.033577	GCGTGACATGTTGACGTGTTTA	60.034	45.455	24.02	1.38	45.32	2.01
2241	2471	1.267832	GCGTGACATGTTGACGTGTTT	60.268	47.619	24.02	0.00	45.32	2.83
2242	2472	0.303493	GCGTGACATGTTGACGTGTT	59.697	50.000	24.02	0.00	45.32	3.32
2244	2474	1.124297	GTAGCGTGACATGTTGACGTG	59.876	52.381	24.02	1.92	38.76	4.49
2245	2475	1.269361	TGTAGCGTGACATGTTGACGT	60.269	47.619	24.02	16.38	35.52	4.34
2246	2476	1.414378	TGTAGCGTGACATGTTGACG	58.586	50.000	20.99	20.99	36.18	4.35
2253	2483	2.608016	CGCCTATCATGTAGCGTGACAT	60.608	50.000	11.37	0.00	43.45	3.06
2254	2484	1.269051	CGCCTATCATGTAGCGTGACA	60.269	52.381	11.37	0.00	43.45	3.58
2255	2485	1.409412	CGCCTATCATGTAGCGTGAC	58.591	55.000	11.37	0.00	43.45	3.67
2256	2486	3.865700	CGCCTATCATGTAGCGTGA	57.134	52.632	11.37	0.00	43.45	4.35
2260	2490	2.376808	AGATGCGCCTATCATGTAGC	57.623	50.000	4.18	0.00	0.00	3.58
2261	2491	3.917988	TCAAGATGCGCCTATCATGTAG	58.082	45.455	4.18	0.00	30.19	2.74
2262	2492	4.541973	ATCAAGATGCGCCTATCATGTA	57.458	40.909	4.18	0.00	30.19	2.29
2263	2493	2.916702	TCAAGATGCGCCTATCATGT	57.083	45.000	4.18	0.00	30.19	3.21
2264	2494	4.752146	TCTATCAAGATGCGCCTATCATG	58.248	43.478	4.18	5.74	0.00	3.07
2265	2495	5.411831	TTCTATCAAGATGCGCCTATCAT	57.588	39.130	4.18	0.00	0.00	2.45
2266	2496	4.814147	CTTCTATCAAGATGCGCCTATCA	58.186	43.478	4.18	0.00	0.00	2.15
2267	2497	3.616379	GCTTCTATCAAGATGCGCCTATC	59.384	47.826	4.18	1.45	41.42	2.08
2268	2498	3.594134	GCTTCTATCAAGATGCGCCTAT	58.406	45.455	4.18	0.00	41.42	2.57
2269	2499	3.032017	GCTTCTATCAAGATGCGCCTA	57.968	47.619	4.18	0.00	41.42	3.93
2270	2500	1.876322	GCTTCTATCAAGATGCGCCT	58.124	50.000	4.18	0.00	41.42	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.