Multiple sequence alignment - TraesCS1B01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G324400 chr1B 100.000 2609 0 0 1 2609 549890436 549887828 0.000000e+00 4819
1 TraesCS1B01G324400 chr2A 89.971 2074 104 39 579 2609 176886329 176884317 0.000000e+00 2582
2 TraesCS1B01G324400 chr2A 89.218 2096 125 43 575 2609 642253579 642251524 0.000000e+00 2525
3 TraesCS1B01G324400 chr4A 89.431 2091 119 37 580 2609 329170870 329172919 0.000000e+00 2543
4 TraesCS1B01G324400 chr4A 89.644 2076 106 37 578 2609 398499303 398497293 0.000000e+00 2542
5 TraesCS1B01G324400 chr4A 86.134 851 55 28 580 1386 615184987 615184156 0.000000e+00 859
6 TraesCS1B01G324400 chr3A 93.016 630 43 1 1980 2609 581852846 581853474 0.000000e+00 918
7 TraesCS1B01G324400 chr3A 88.686 274 13 4 579 851 581852446 581852702 4.190000e-83 318
8 TraesCS1B01G324400 chr6D 89.855 690 36 16 579 1238 438886553 438885868 0.000000e+00 856
9 TraesCS1B01G324400 chr7B 75.853 791 149 32 998 1765 198147970 198147199 5.310000e-97 364
10 TraesCS1B01G324400 chr1A 86.777 242 16 8 3 237 504631628 504631396 3.330000e-64 255
11 TraesCS1B01G324400 chr1D 85.446 213 16 8 31 236 408534076 408533872 9.460000e-50 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G324400 chr1B 549887828 549890436 2608 True 4819 4819 100.000 1 2609 1 chr1B.!!$R1 2608
1 TraesCS1B01G324400 chr2A 176884317 176886329 2012 True 2582 2582 89.971 579 2609 1 chr2A.!!$R1 2030
2 TraesCS1B01G324400 chr2A 642251524 642253579 2055 True 2525 2525 89.218 575 2609 1 chr2A.!!$R2 2034
3 TraesCS1B01G324400 chr4A 329170870 329172919 2049 False 2543 2543 89.431 580 2609 1 chr4A.!!$F1 2029
4 TraesCS1B01G324400 chr4A 398497293 398499303 2010 True 2542 2542 89.644 578 2609 1 chr4A.!!$R1 2031
5 TraesCS1B01G324400 chr4A 615184156 615184987 831 True 859 859 86.134 580 1386 1 chr4A.!!$R2 806
6 TraesCS1B01G324400 chr3A 581852446 581853474 1028 False 618 918 90.851 579 2609 2 chr3A.!!$F1 2030
7 TraesCS1B01G324400 chr6D 438885868 438886553 685 True 856 856 89.855 579 1238 1 chr6D.!!$R1 659
8 TraesCS1B01G324400 chr7B 198147199 198147970 771 True 364 364 75.853 998 1765 1 chr7B.!!$R1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 572 0.031585 ATATCTTCAAGCGCCGCGTA 59.968 50.0 15.34 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2343 0.039074 CGACGAGTGCCAAGAAGTCT 60.039 55.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.659610 AGCTCGCTCCTTCCACAC 59.340 61.111 0.00 0.00 0.00 3.82
18 19 2.210013 AGCTCGCTCCTTCCACACA 61.210 57.895 0.00 0.00 0.00 3.72
19 20 1.739562 GCTCGCTCCTTCCACACAG 60.740 63.158 0.00 0.00 0.00 3.66
20 21 1.739562 CTCGCTCCTTCCACACAGC 60.740 63.158 0.00 0.00 0.00 4.40
21 22 2.743928 CGCTCCTTCCACACAGCC 60.744 66.667 0.00 0.00 0.00 4.85
22 23 2.431683 GCTCCTTCCACACAGCCA 59.568 61.111 0.00 0.00 0.00 4.75
23 24 1.228245 GCTCCTTCCACACAGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
24 25 1.239968 GCTCCTTCCACACAGCCAAG 61.240 60.000 0.00 0.00 0.00 3.61
25 26 0.607489 CTCCTTCCACACAGCCAAGG 60.607 60.000 0.00 0.00 37.36 3.61
26 27 1.059584 TCCTTCCACACAGCCAAGGA 61.060 55.000 0.00 0.00 41.79 3.36
27 28 0.178992 CCTTCCACACAGCCAAGGAA 60.179 55.000 0.00 0.00 38.15 3.36
28 29 1.691196 CTTCCACACAGCCAAGGAAA 58.309 50.000 0.00 0.00 39.47 3.13
29 30 2.242043 CTTCCACACAGCCAAGGAAAT 58.758 47.619 0.00 0.00 39.47 2.17
30 31 1.909700 TCCACACAGCCAAGGAAATC 58.090 50.000 0.00 0.00 0.00 2.17
31 32 0.890683 CCACACAGCCAAGGAAATCC 59.109 55.000 0.00 0.00 0.00 3.01
46 47 6.819397 AGGAAATCCTTTCTTTTTACCGAG 57.181 37.500 0.00 0.00 46.09 4.63
47 48 5.710567 AGGAAATCCTTTCTTTTTACCGAGG 59.289 40.000 0.00 0.00 46.09 4.63
48 49 5.386958 AAATCCTTTCTTTTTACCGAGGC 57.613 39.130 0.00 0.00 0.00 4.70
49 50 3.495434 TCCTTTCTTTTTACCGAGGCA 57.505 42.857 0.00 0.00 0.00 4.75
50 51 3.822940 TCCTTTCTTTTTACCGAGGCAA 58.177 40.909 0.00 0.00 0.00 4.52
51 52 4.403734 TCCTTTCTTTTTACCGAGGCAAT 58.596 39.130 0.00 0.00 0.00 3.56
52 53 4.457949 TCCTTTCTTTTTACCGAGGCAATC 59.542 41.667 0.00 0.00 0.00 2.67
53 54 4.380550 CCTTTCTTTTTACCGAGGCAATCC 60.381 45.833 0.00 0.00 0.00 3.01
54 55 3.426787 TCTTTTTACCGAGGCAATCCA 57.573 42.857 0.00 0.00 33.74 3.41
55 56 3.757270 TCTTTTTACCGAGGCAATCCAA 58.243 40.909 0.00 0.00 33.74 3.53
56 57 4.340617 TCTTTTTACCGAGGCAATCCAAT 58.659 39.130 0.00 0.00 33.74 3.16
57 58 4.398044 TCTTTTTACCGAGGCAATCCAATC 59.602 41.667 0.00 0.00 33.74 2.67
58 59 2.341846 TTACCGAGGCAATCCAATCC 57.658 50.000 0.00 0.00 33.74 3.01
59 60 0.472471 TACCGAGGCAATCCAATCCC 59.528 55.000 0.00 0.00 33.74 3.85
60 61 1.529244 CCGAGGCAATCCAATCCCC 60.529 63.158 0.00 0.00 33.74 4.81
61 62 1.533711 CGAGGCAATCCAATCCCCT 59.466 57.895 0.00 0.00 33.74 4.79
62 63 0.536006 CGAGGCAATCCAATCCCCTC 60.536 60.000 0.00 0.00 38.92 4.30
63 64 0.849417 GAGGCAATCCAATCCCCTCT 59.151 55.000 0.00 0.00 39.15 3.69
64 65 1.216427 GAGGCAATCCAATCCCCTCTT 59.784 52.381 0.00 0.00 39.15 2.85
65 66 1.216427 AGGCAATCCAATCCCCTCTTC 59.784 52.381 0.00 0.00 33.74 2.87
66 67 1.063717 GGCAATCCAATCCCCTCTTCA 60.064 52.381 0.00 0.00 0.00 3.02
67 68 2.027385 GCAATCCAATCCCCTCTTCAC 58.973 52.381 0.00 0.00 0.00 3.18
68 69 2.357569 GCAATCCAATCCCCTCTTCACT 60.358 50.000 0.00 0.00 0.00 3.41
69 70 3.879321 GCAATCCAATCCCCTCTTCACTT 60.879 47.826 0.00 0.00 0.00 3.16
70 71 3.941704 ATCCAATCCCCTCTTCACTTC 57.058 47.619 0.00 0.00 0.00 3.01
71 72 1.555075 TCCAATCCCCTCTTCACTTCG 59.445 52.381 0.00 0.00 0.00 3.79
72 73 1.373570 CAATCCCCTCTTCACTTCGC 58.626 55.000 0.00 0.00 0.00 4.70
73 74 0.253327 AATCCCCTCTTCACTTCGCC 59.747 55.000 0.00 0.00 0.00 5.54
74 75 0.909610 ATCCCCTCTTCACTTCGCCA 60.910 55.000 0.00 0.00 0.00 5.69
75 76 1.078848 CCCCTCTTCACTTCGCCAG 60.079 63.158 0.00 0.00 0.00 4.85
76 77 1.674057 CCCTCTTCACTTCGCCAGT 59.326 57.895 0.00 0.00 35.35 4.00
77 78 0.035458 CCCTCTTCACTTCGCCAGTT 59.965 55.000 0.00 0.00 30.92 3.16
78 79 1.433534 CCTCTTCACTTCGCCAGTTC 58.566 55.000 0.00 0.00 30.92 3.01
79 80 1.270305 CCTCTTCACTTCGCCAGTTCA 60.270 52.381 0.00 0.00 30.92 3.18
80 81 1.795286 CTCTTCACTTCGCCAGTTCAC 59.205 52.381 0.00 0.00 30.92 3.18
81 82 1.412710 TCTTCACTTCGCCAGTTCACT 59.587 47.619 0.00 0.00 30.92 3.41
82 83 2.158957 TCTTCACTTCGCCAGTTCACTT 60.159 45.455 0.00 0.00 30.92 3.16
83 84 1.865865 TCACTTCGCCAGTTCACTTC 58.134 50.000 0.00 0.00 30.92 3.01
84 85 1.412710 TCACTTCGCCAGTTCACTTCT 59.587 47.619 0.00 0.00 30.92 2.85
85 86 1.528586 CACTTCGCCAGTTCACTTCTG 59.471 52.381 0.00 0.00 30.92 3.02
86 87 1.139058 ACTTCGCCAGTTCACTTCTGT 59.861 47.619 0.00 0.00 27.32 3.41
87 88 2.213499 CTTCGCCAGTTCACTTCTGTT 58.787 47.619 0.00 0.00 0.00 3.16
88 89 1.865865 TCGCCAGTTCACTTCTGTTC 58.134 50.000 0.00 0.00 0.00 3.18
89 90 0.868406 CGCCAGTTCACTTCTGTTCC 59.132 55.000 0.00 0.00 0.00 3.62
90 91 1.810031 CGCCAGTTCACTTCTGTTCCA 60.810 52.381 0.00 0.00 0.00 3.53
91 92 1.876156 GCCAGTTCACTTCTGTTCCAG 59.124 52.381 0.00 0.00 0.00 3.86
92 93 2.746472 GCCAGTTCACTTCTGTTCCAGT 60.746 50.000 0.00 0.00 32.61 4.00
93 94 2.874701 CCAGTTCACTTCTGTTCCAGTG 59.125 50.000 0.00 0.00 41.65 3.66
94 95 2.289002 CAGTTCACTTCTGTTCCAGTGC 59.711 50.000 0.00 0.00 40.33 4.40
95 96 2.171448 AGTTCACTTCTGTTCCAGTGCT 59.829 45.455 0.00 0.00 40.33 4.40
96 97 2.533266 TCACTTCTGTTCCAGTGCTC 57.467 50.000 0.00 0.00 40.33 4.26
97 98 2.042464 TCACTTCTGTTCCAGTGCTCT 58.958 47.619 0.00 0.00 40.33 4.09
98 99 2.036475 TCACTTCTGTTCCAGTGCTCTC 59.964 50.000 0.00 0.00 40.33 3.20
99 100 1.346068 ACTTCTGTTCCAGTGCTCTCC 59.654 52.381 0.00 0.00 32.61 3.71
100 101 1.622811 CTTCTGTTCCAGTGCTCTCCT 59.377 52.381 0.00 0.00 32.61 3.69
101 102 0.972134 TCTGTTCCAGTGCTCTCCTG 59.028 55.000 0.00 0.00 32.61 3.86
102 103 0.972134 CTGTTCCAGTGCTCTCCTGA 59.028 55.000 0.00 0.00 31.38 3.86
103 104 0.681733 TGTTCCAGTGCTCTCCTGAC 59.318 55.000 0.00 0.00 31.38 3.51
104 105 0.972883 GTTCCAGTGCTCTCCTGACT 59.027 55.000 0.00 0.00 31.38 3.41
105 106 1.346068 GTTCCAGTGCTCTCCTGACTT 59.654 52.381 0.00 0.00 31.38 3.01
106 107 0.972134 TCCAGTGCTCTCCTGACTTG 59.028 55.000 0.00 0.00 31.38 3.16
107 108 0.036577 CCAGTGCTCTCCTGACTTGG 60.037 60.000 0.00 0.00 31.38 3.61
108 109 0.036577 CAGTGCTCTCCTGACTTGGG 60.037 60.000 0.00 0.00 31.38 4.12
109 110 0.472734 AGTGCTCTCCTGACTTGGGT 60.473 55.000 0.00 0.00 0.00 4.51
110 111 0.398318 GTGCTCTCCTGACTTGGGTT 59.602 55.000 0.00 0.00 0.00 4.11
111 112 0.397941 TGCTCTCCTGACTTGGGTTG 59.602 55.000 0.00 0.00 0.00 3.77
112 113 0.322008 GCTCTCCTGACTTGGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
113 114 1.352083 CTCTCCTGACTTGGGTTGGA 58.648 55.000 0.00 0.00 0.00 3.53
114 115 1.912043 CTCTCCTGACTTGGGTTGGAT 59.088 52.381 0.00 0.00 31.64 3.41
115 116 1.909302 TCTCCTGACTTGGGTTGGATC 59.091 52.381 0.00 0.00 31.64 3.36
116 117 1.630369 CTCCTGACTTGGGTTGGATCA 59.370 52.381 0.00 0.00 31.64 2.92
117 118 1.351017 TCCTGACTTGGGTTGGATCAC 59.649 52.381 0.00 0.00 0.00 3.06
118 119 1.614317 CCTGACTTGGGTTGGATCACC 60.614 57.143 0.00 0.00 35.88 4.02
119 120 0.036164 TGACTTGGGTTGGATCACCG 59.964 55.000 0.00 0.00 37.76 4.94
120 121 1.303317 ACTTGGGTTGGATCACCGC 60.303 57.895 0.00 0.00 37.76 5.68
121 122 2.359354 TTGGGTTGGATCACCGCG 60.359 61.111 0.00 0.00 37.76 6.46
122 123 3.185299 TTGGGTTGGATCACCGCGT 62.185 57.895 4.92 0.00 37.76 6.01
123 124 3.124921 GGGTTGGATCACCGCGTG 61.125 66.667 4.92 3.64 37.76 5.34
124 125 2.358247 GGTTGGATCACCGCGTGT 60.358 61.111 4.92 0.00 39.42 4.49
125 126 1.964373 GGTTGGATCACCGCGTGTT 60.964 57.895 4.92 0.00 39.42 3.32
126 127 1.495951 GTTGGATCACCGCGTGTTC 59.504 57.895 4.92 8.12 39.42 3.18
127 128 1.069935 TTGGATCACCGCGTGTTCA 59.930 52.632 4.92 2.08 39.42 3.18
128 129 0.948623 TTGGATCACCGCGTGTTCAG 60.949 55.000 4.92 0.00 39.42 3.02
129 130 2.740714 GGATCACCGCGTGTTCAGC 61.741 63.158 4.92 0.00 34.91 4.26
137 138 3.351604 GCGTGTTCAGCGAAAGAAG 57.648 52.632 0.00 0.00 0.00 2.85
138 139 0.110644 GCGTGTTCAGCGAAAGAAGG 60.111 55.000 0.00 0.00 0.00 3.46
139 140 0.512952 CGTGTTCAGCGAAAGAAGGG 59.487 55.000 0.00 0.00 0.00 3.95
140 141 0.875059 GTGTTCAGCGAAAGAAGGGG 59.125 55.000 0.00 0.00 0.00 4.79
141 142 0.472471 TGTTCAGCGAAAGAAGGGGT 59.528 50.000 0.00 0.00 0.00 4.95
142 143 1.695242 TGTTCAGCGAAAGAAGGGGTA 59.305 47.619 0.00 0.00 0.00 3.69
143 144 2.105134 TGTTCAGCGAAAGAAGGGGTAA 59.895 45.455 0.00 0.00 0.00 2.85
144 145 2.467566 TCAGCGAAAGAAGGGGTAAC 57.532 50.000 0.00 0.00 0.00 2.50
145 146 1.076332 CAGCGAAAGAAGGGGTAACG 58.924 55.000 0.00 0.00 37.60 3.18
146 147 0.683412 AGCGAAAGAAGGGGTAACGT 59.317 50.000 0.00 0.00 37.60 3.99
147 148 0.794473 GCGAAAGAAGGGGTAACGTG 59.206 55.000 0.00 0.00 37.60 4.49
148 149 1.435577 CGAAAGAAGGGGTAACGTGG 58.564 55.000 0.00 0.00 37.60 4.94
149 150 1.162698 GAAAGAAGGGGTAACGTGGC 58.837 55.000 0.00 0.00 37.60 5.01
150 151 0.475044 AAAGAAGGGGTAACGTGGCA 59.525 50.000 0.00 0.00 37.60 4.92
151 152 0.250597 AAGAAGGGGTAACGTGGCAC 60.251 55.000 7.79 7.79 37.60 5.01
152 153 1.125711 AGAAGGGGTAACGTGGCACT 61.126 55.000 16.72 0.00 37.60 4.40
153 154 0.953960 GAAGGGGTAACGTGGCACTG 60.954 60.000 16.72 11.66 37.60 3.66
154 155 3.053896 GGGGTAACGTGGCACTGC 61.054 66.667 16.72 0.92 37.60 4.40
155 156 3.419759 GGGTAACGTGGCACTGCG 61.420 66.667 16.72 5.15 37.60 5.18
156 157 3.419759 GGTAACGTGGCACTGCGG 61.420 66.667 16.72 2.12 0.00 5.69
157 158 2.663852 GTAACGTGGCACTGCGGT 60.664 61.111 16.72 3.66 0.00 5.68
158 159 2.109387 TAACGTGGCACTGCGGTT 59.891 55.556 16.72 14.08 0.00 4.44
159 160 1.524165 TAACGTGGCACTGCGGTTT 60.524 52.632 16.72 2.80 0.00 3.27
160 161 1.096386 TAACGTGGCACTGCGGTTTT 61.096 50.000 16.72 2.47 0.00 2.43
161 162 2.051345 CGTGGCACTGCGGTTTTC 60.051 61.111 16.72 0.00 0.00 2.29
162 163 2.335011 GTGGCACTGCGGTTTTCC 59.665 61.111 11.13 0.00 0.00 3.13
163 164 2.909965 TGGCACTGCGGTTTTCCC 60.910 61.111 0.00 0.00 36.42 3.97
164 165 2.597510 GGCACTGCGGTTTTCCCT 60.598 61.111 0.00 0.00 36.42 4.20
165 166 2.200337 GGCACTGCGGTTTTCCCTT 61.200 57.895 0.00 0.00 36.42 3.95
166 167 1.739667 GCACTGCGGTTTTCCCTTT 59.260 52.632 0.00 0.00 36.42 3.11
167 168 0.104120 GCACTGCGGTTTTCCCTTTT 59.896 50.000 0.00 0.00 36.42 2.27
168 169 1.851658 CACTGCGGTTTTCCCTTTTG 58.148 50.000 0.00 0.00 36.42 2.44
169 170 0.750249 ACTGCGGTTTTCCCTTTTGG 59.250 50.000 0.00 0.00 36.42 3.28
179 180 4.432601 CCTTTTGGGCCGAATGGA 57.567 55.556 27.07 4.53 36.79 3.41
180 181 1.890174 CCTTTTGGGCCGAATGGAC 59.110 57.895 27.07 0.00 45.75 4.02
191 192 0.643820 CGAATGGACGTTCGTTAGGC 59.356 55.000 16.23 0.00 44.32 3.93
192 193 1.734707 CGAATGGACGTTCGTTAGGCT 60.735 52.381 16.23 0.00 44.32 4.58
193 194 2.344025 GAATGGACGTTCGTTAGGCTT 58.656 47.619 0.00 0.00 0.00 4.35
194 195 2.467566 ATGGACGTTCGTTAGGCTTT 57.532 45.000 0.00 0.00 0.00 3.51
195 196 2.243602 TGGACGTTCGTTAGGCTTTT 57.756 45.000 0.00 0.00 0.00 2.27
196 197 1.868498 TGGACGTTCGTTAGGCTTTTG 59.132 47.619 0.00 0.00 0.00 2.44
197 198 1.869132 GGACGTTCGTTAGGCTTTTGT 59.131 47.619 0.00 0.00 0.00 2.83
198 199 2.288729 GGACGTTCGTTAGGCTTTTGTT 59.711 45.455 0.00 0.00 0.00 2.83
199 200 3.242837 GGACGTTCGTTAGGCTTTTGTTT 60.243 43.478 0.00 0.00 0.00 2.83
200 201 4.024977 GGACGTTCGTTAGGCTTTTGTTTA 60.025 41.667 0.00 0.00 0.00 2.01
201 202 5.334337 GGACGTTCGTTAGGCTTTTGTTTAT 60.334 40.000 0.00 0.00 0.00 1.40
202 203 6.063640 ACGTTCGTTAGGCTTTTGTTTATT 57.936 33.333 0.00 0.00 0.00 1.40
203 204 6.497437 ACGTTCGTTAGGCTTTTGTTTATTT 58.503 32.000 0.00 0.00 0.00 1.40
204 205 6.634035 ACGTTCGTTAGGCTTTTGTTTATTTC 59.366 34.615 0.00 0.00 0.00 2.17
205 206 6.633634 CGTTCGTTAGGCTTTTGTTTATTTCA 59.366 34.615 0.00 0.00 0.00 2.69
206 207 7.149192 CGTTCGTTAGGCTTTTGTTTATTTCAG 60.149 37.037 0.00 0.00 0.00 3.02
207 208 7.266922 TCGTTAGGCTTTTGTTTATTTCAGT 57.733 32.000 0.00 0.00 0.00 3.41
208 209 7.708998 TCGTTAGGCTTTTGTTTATTTCAGTT 58.291 30.769 0.00 0.00 0.00 3.16
209 210 7.646130 TCGTTAGGCTTTTGTTTATTTCAGTTG 59.354 33.333 0.00 0.00 0.00 3.16
210 211 7.096230 CGTTAGGCTTTTGTTTATTTCAGTTGG 60.096 37.037 0.00 0.00 0.00 3.77
211 212 5.610398 AGGCTTTTGTTTATTTCAGTTGGG 58.390 37.500 0.00 0.00 0.00 4.12
212 213 4.213270 GGCTTTTGTTTATTTCAGTTGGGC 59.787 41.667 0.00 0.00 0.00 5.36
213 214 4.213270 GCTTTTGTTTATTTCAGTTGGGCC 59.787 41.667 0.00 0.00 0.00 5.80
214 215 5.359194 TTTTGTTTATTTCAGTTGGGCCA 57.641 34.783 0.00 0.00 0.00 5.36
215 216 4.599047 TTGTTTATTTCAGTTGGGCCAG 57.401 40.909 6.23 0.00 0.00 4.85
216 217 2.298729 TGTTTATTTCAGTTGGGCCAGC 59.701 45.455 13.09 13.09 0.00 4.85
217 218 2.562738 GTTTATTTCAGTTGGGCCAGCT 59.437 45.455 18.06 18.06 0.00 4.24
218 219 3.730215 TTATTTCAGTTGGGCCAGCTA 57.270 42.857 23.17 8.26 0.00 3.32
219 220 2.134789 ATTTCAGTTGGGCCAGCTAG 57.865 50.000 23.17 16.39 0.00 3.42
220 221 0.771127 TTTCAGTTGGGCCAGCTAGT 59.229 50.000 23.17 0.00 0.00 2.57
221 222 0.771127 TTCAGTTGGGCCAGCTAGTT 59.229 50.000 23.17 0.00 0.00 2.24
222 223 0.771127 TCAGTTGGGCCAGCTAGTTT 59.229 50.000 23.17 0.00 0.00 2.66
223 224 1.144913 TCAGTTGGGCCAGCTAGTTTT 59.855 47.619 23.17 0.00 0.00 2.43
224 225 2.373836 TCAGTTGGGCCAGCTAGTTTTA 59.626 45.455 23.17 1.95 0.00 1.52
225 226 3.010138 TCAGTTGGGCCAGCTAGTTTTAT 59.990 43.478 23.17 0.00 0.00 1.40
226 227 3.763897 CAGTTGGGCCAGCTAGTTTTATT 59.236 43.478 23.17 0.00 0.00 1.40
227 228 4.017126 AGTTGGGCCAGCTAGTTTTATTC 58.983 43.478 22.36 0.00 0.00 1.75
228 229 4.017126 GTTGGGCCAGCTAGTTTTATTCT 58.983 43.478 13.73 0.00 0.00 2.40
229 230 3.886123 TGGGCCAGCTAGTTTTATTCTC 58.114 45.455 0.00 0.00 0.00 2.87
230 231 3.523564 TGGGCCAGCTAGTTTTATTCTCT 59.476 43.478 0.00 0.00 0.00 3.10
231 232 4.130857 GGGCCAGCTAGTTTTATTCTCTC 58.869 47.826 4.39 0.00 0.00 3.20
232 233 4.141597 GGGCCAGCTAGTTTTATTCTCTCT 60.142 45.833 4.39 0.00 0.00 3.10
233 234 5.053811 GGCCAGCTAGTTTTATTCTCTCTC 58.946 45.833 0.00 0.00 0.00 3.20
234 235 5.163353 GGCCAGCTAGTTTTATTCTCTCTCT 60.163 44.000 0.00 0.00 0.00 3.10
235 236 5.983118 GCCAGCTAGTTTTATTCTCTCTCTC 59.017 44.000 0.00 0.00 0.00 3.20
236 237 6.183360 GCCAGCTAGTTTTATTCTCTCTCTCT 60.183 42.308 0.00 0.00 0.00 3.10
237 238 7.202526 CCAGCTAGTTTTATTCTCTCTCTCTG 58.797 42.308 0.00 0.00 0.00 3.35
238 239 7.147915 CCAGCTAGTTTTATTCTCTCTCTCTGT 60.148 40.741 0.00 0.00 0.00 3.41
239 240 7.915397 CAGCTAGTTTTATTCTCTCTCTCTGTC 59.085 40.741 0.00 0.00 0.00 3.51
240 241 7.834181 AGCTAGTTTTATTCTCTCTCTCTGTCT 59.166 37.037 0.00 0.00 0.00 3.41
241 242 8.129211 GCTAGTTTTATTCTCTCTCTCTGTCTC 58.871 40.741 0.00 0.00 0.00 3.36
242 243 9.396022 CTAGTTTTATTCTCTCTCTCTGTCTCT 57.604 37.037 0.00 0.00 0.00 3.10
243 244 8.281212 AGTTTTATTCTCTCTCTCTGTCTCTC 57.719 38.462 0.00 0.00 0.00 3.20
244 245 6.918892 TTTATTCTCTCTCTCTGTCTCTCG 57.081 41.667 0.00 0.00 0.00 4.04
245 246 3.973206 TTCTCTCTCTCTGTCTCTCGT 57.027 47.619 0.00 0.00 0.00 4.18
246 247 5.607939 ATTCTCTCTCTCTGTCTCTCGTA 57.392 43.478 0.00 0.00 0.00 3.43
247 248 5.607939 TTCTCTCTCTCTGTCTCTCGTAT 57.392 43.478 0.00 0.00 0.00 3.06
248 249 5.607939 TCTCTCTCTCTGTCTCTCGTATT 57.392 43.478 0.00 0.00 0.00 1.89
249 250 5.356426 TCTCTCTCTCTGTCTCTCGTATTG 58.644 45.833 0.00 0.00 0.00 1.90
250 251 3.874543 TCTCTCTCTGTCTCTCGTATTGC 59.125 47.826 0.00 0.00 0.00 3.56
251 252 2.946329 TCTCTCTGTCTCTCGTATTGCC 59.054 50.000 0.00 0.00 0.00 4.52
252 253 2.025155 TCTCTGTCTCTCGTATTGCCC 58.975 52.381 0.00 0.00 0.00 5.36
253 254 1.751351 CTCTGTCTCTCGTATTGCCCA 59.249 52.381 0.00 0.00 0.00 5.36
254 255 2.166459 CTCTGTCTCTCGTATTGCCCAA 59.834 50.000 0.00 0.00 0.00 4.12
255 256 2.565391 TCTGTCTCTCGTATTGCCCAAA 59.435 45.455 0.00 0.00 0.00 3.28
256 257 2.673368 CTGTCTCTCGTATTGCCCAAAC 59.327 50.000 0.00 0.00 0.00 2.93
257 258 2.037902 TGTCTCTCGTATTGCCCAAACA 59.962 45.455 0.00 0.00 0.00 2.83
258 259 3.270877 GTCTCTCGTATTGCCCAAACAT 58.729 45.455 0.00 0.00 0.00 2.71
259 260 3.689649 GTCTCTCGTATTGCCCAAACATT 59.310 43.478 0.00 0.00 0.00 2.71
260 261 4.156008 GTCTCTCGTATTGCCCAAACATTT 59.844 41.667 0.00 0.00 0.00 2.32
261 262 4.394920 TCTCTCGTATTGCCCAAACATTTC 59.605 41.667 0.00 0.00 0.00 2.17
262 263 4.331968 TCTCGTATTGCCCAAACATTTCT 58.668 39.130 0.00 0.00 0.00 2.52
263 264 4.764823 TCTCGTATTGCCCAAACATTTCTT 59.235 37.500 0.00 0.00 0.00 2.52
264 265 5.242838 TCTCGTATTGCCCAAACATTTCTTT 59.757 36.000 0.00 0.00 0.00 2.52
265 266 5.226396 TCGTATTGCCCAAACATTTCTTTG 58.774 37.500 0.00 0.00 0.00 2.77
266 267 5.010112 TCGTATTGCCCAAACATTTCTTTGA 59.990 36.000 0.00 0.00 33.61 2.69
267 268 5.868801 CGTATTGCCCAAACATTTCTTTGAT 59.131 36.000 0.00 0.00 33.61 2.57
268 269 6.034898 CGTATTGCCCAAACATTTCTTTGATC 59.965 38.462 0.00 0.00 33.61 2.92
269 270 5.549742 TTGCCCAAACATTTCTTTGATCT 57.450 34.783 0.00 0.00 33.61 2.75
270 271 5.549742 TGCCCAAACATTTCTTTGATCTT 57.450 34.783 0.00 0.00 33.61 2.40
271 272 6.662865 TGCCCAAACATTTCTTTGATCTTA 57.337 33.333 0.00 0.00 33.61 2.10
272 273 7.060383 TGCCCAAACATTTCTTTGATCTTAA 57.940 32.000 0.00 0.00 33.61 1.85
273 274 7.504403 TGCCCAAACATTTCTTTGATCTTAAA 58.496 30.769 0.00 0.00 33.61 1.52
274 275 7.989741 TGCCCAAACATTTCTTTGATCTTAAAA 59.010 29.630 0.00 0.00 33.61 1.52
275 276 8.835439 GCCCAAACATTTCTTTGATCTTAAAAA 58.165 29.630 0.00 0.00 33.61 1.94
305 306 5.995565 AACAAAATAAGGACCCCTTTAGC 57.004 39.130 3.34 0.00 41.69 3.09
306 307 5.270979 ACAAAATAAGGACCCCTTTAGCT 57.729 39.130 3.34 0.00 41.69 3.32
307 308 5.016831 ACAAAATAAGGACCCCTTTAGCTG 58.983 41.667 3.34 1.00 41.69 4.24
308 309 3.953542 AATAAGGACCCCTTTAGCTGG 57.046 47.619 3.34 0.00 41.69 4.85
309 310 0.916809 TAAGGACCCCTTTAGCTGGC 59.083 55.000 3.34 0.00 41.69 4.85
310 311 2.124695 GGACCCCTTTAGCTGGCG 60.125 66.667 0.00 0.00 0.00 5.69
311 312 2.666098 GGACCCCTTTAGCTGGCGA 61.666 63.158 0.00 0.00 0.00 5.54
312 313 1.153349 GACCCCTTTAGCTGGCGAG 60.153 63.158 0.00 0.00 0.00 5.03
313 314 2.514824 CCCCTTTAGCTGGCGAGC 60.515 66.667 13.51 13.51 46.64 5.03
331 332 4.785453 GCTCGCAAGGAGGGGGTG 62.785 72.222 0.00 0.00 43.36 4.61
332 333 4.101448 CTCGCAAGGAGGGGGTGG 62.101 72.222 0.00 0.00 39.22 4.61
335 336 4.066139 GCAAGGAGGGGGTGGCAT 62.066 66.667 0.00 0.00 0.00 4.40
336 337 2.772924 CAAGGAGGGGGTGGCATT 59.227 61.111 0.00 0.00 0.00 3.56
337 338 1.683365 CAAGGAGGGGGTGGCATTG 60.683 63.158 0.00 0.00 0.00 2.82
338 339 2.934838 AAGGAGGGGGTGGCATTGG 61.935 63.158 0.00 0.00 0.00 3.16
343 344 2.759560 GGGGTGGCATTGGCGAAT 60.760 61.111 5.68 0.00 42.47 3.34
344 345 2.495866 GGGTGGCATTGGCGAATG 59.504 61.111 16.33 16.33 41.82 2.67
345 346 2.495866 GGTGGCATTGGCGAATGG 59.504 61.111 21.08 5.28 39.62 3.16
346 347 2.350458 GGTGGCATTGGCGAATGGT 61.350 57.895 21.08 0.00 39.62 3.55
347 348 1.591183 GTGGCATTGGCGAATGGTT 59.409 52.632 21.08 0.00 39.62 3.67
348 349 0.037419 GTGGCATTGGCGAATGGTTT 60.037 50.000 21.08 0.00 39.62 3.27
349 350 0.246086 TGGCATTGGCGAATGGTTTC 59.754 50.000 21.08 6.00 39.62 2.78
350 351 0.532115 GGCATTGGCGAATGGTTTCT 59.468 50.000 21.08 0.00 39.62 2.52
351 352 1.469767 GGCATTGGCGAATGGTTTCTC 60.470 52.381 21.08 5.01 39.62 2.87
352 353 1.474077 GCATTGGCGAATGGTTTCTCT 59.526 47.619 21.08 0.00 39.62 3.10
353 354 2.682856 GCATTGGCGAATGGTTTCTCTA 59.317 45.455 21.08 0.00 39.62 2.43
354 355 3.242870 GCATTGGCGAATGGTTTCTCTAG 60.243 47.826 21.08 0.00 39.62 2.43
355 356 2.024176 TGGCGAATGGTTTCTCTAGC 57.976 50.000 0.00 0.00 0.00 3.42
356 357 1.277842 TGGCGAATGGTTTCTCTAGCA 59.722 47.619 0.00 0.00 0.00 3.49
357 358 2.092968 TGGCGAATGGTTTCTCTAGCAT 60.093 45.455 0.00 0.00 37.83 3.79
358 359 2.945668 GGCGAATGGTTTCTCTAGCATT 59.054 45.455 0.00 0.00 45.86 3.56
359 360 3.378427 GGCGAATGGTTTCTCTAGCATTT 59.622 43.478 0.00 0.00 43.93 2.32
360 361 4.142381 GGCGAATGGTTTCTCTAGCATTTT 60.142 41.667 0.00 0.00 43.93 1.82
361 362 5.402398 GCGAATGGTTTCTCTAGCATTTTT 58.598 37.500 0.00 0.00 43.93 1.94
378 379 3.848272 TTTTTCCTTGCGATGGATGTC 57.152 42.857 0.00 0.00 33.09 3.06
379 380 1.368641 TTTCCTTGCGATGGATGTCG 58.631 50.000 0.00 0.00 44.14 4.35
380 381 0.461870 TTCCTTGCGATGGATGTCGG 60.462 55.000 0.00 0.00 41.72 4.79
381 382 1.153369 CCTTGCGATGGATGTCGGT 60.153 57.895 0.00 0.00 41.72 4.69
382 383 0.744414 CCTTGCGATGGATGTCGGTT 60.744 55.000 0.00 0.00 41.72 4.44
383 384 1.472552 CCTTGCGATGGATGTCGGTTA 60.473 52.381 0.00 0.00 41.72 2.85
384 385 1.593006 CTTGCGATGGATGTCGGTTAC 59.407 52.381 0.00 0.00 41.72 2.50
385 386 0.821517 TGCGATGGATGTCGGTTACT 59.178 50.000 0.00 0.00 41.72 2.24
386 387 1.206132 TGCGATGGATGTCGGTTACTT 59.794 47.619 0.00 0.00 41.72 2.24
387 388 2.277084 GCGATGGATGTCGGTTACTTT 58.723 47.619 0.00 0.00 41.72 2.66
388 389 3.119065 TGCGATGGATGTCGGTTACTTTA 60.119 43.478 0.00 0.00 41.72 1.85
389 390 3.489785 GCGATGGATGTCGGTTACTTTAG 59.510 47.826 0.00 0.00 41.72 1.85
390 391 4.735578 GCGATGGATGTCGGTTACTTTAGA 60.736 45.833 0.00 0.00 41.72 2.10
391 392 4.976731 CGATGGATGTCGGTTACTTTAGAG 59.023 45.833 0.00 0.00 37.94 2.43
392 393 4.119442 TGGATGTCGGTTACTTTAGAGC 57.881 45.455 0.00 0.00 0.00 4.09
393 394 3.512329 TGGATGTCGGTTACTTTAGAGCA 59.488 43.478 0.00 0.00 0.00 4.26
394 395 4.020928 TGGATGTCGGTTACTTTAGAGCAA 60.021 41.667 0.00 0.00 0.00 3.91
395 396 4.329256 GGATGTCGGTTACTTTAGAGCAAC 59.671 45.833 0.00 0.00 0.00 4.17
396 397 4.325028 TGTCGGTTACTTTAGAGCAACA 57.675 40.909 0.00 0.00 0.00 3.33
397 398 4.890088 TGTCGGTTACTTTAGAGCAACAT 58.110 39.130 0.00 0.00 0.00 2.71
398 399 4.688879 TGTCGGTTACTTTAGAGCAACATG 59.311 41.667 0.00 0.00 0.00 3.21
399 400 4.092968 GTCGGTTACTTTAGAGCAACATGG 59.907 45.833 0.00 0.00 0.00 3.66
400 401 3.181510 CGGTTACTTTAGAGCAACATGGC 60.182 47.826 0.00 0.00 0.00 4.40
401 402 3.756434 GGTTACTTTAGAGCAACATGGCA 59.244 43.478 0.00 0.00 35.83 4.92
402 403 4.142600 GGTTACTTTAGAGCAACATGGCAG 60.143 45.833 0.00 0.00 35.83 4.85
403 404 3.146104 ACTTTAGAGCAACATGGCAGT 57.854 42.857 0.00 0.00 35.83 4.40
404 405 3.490348 ACTTTAGAGCAACATGGCAGTT 58.510 40.909 0.00 0.00 35.83 3.16
405 406 3.891366 ACTTTAGAGCAACATGGCAGTTT 59.109 39.130 0.00 0.00 35.83 2.66
406 407 4.022849 ACTTTAGAGCAACATGGCAGTTTC 60.023 41.667 0.00 0.00 35.83 2.78
407 408 2.283145 AGAGCAACATGGCAGTTTCT 57.717 45.000 0.00 0.00 35.83 2.52
408 409 1.884579 AGAGCAACATGGCAGTTTCTG 59.115 47.619 0.00 0.00 35.83 3.02
409 410 1.610522 GAGCAACATGGCAGTTTCTGT 59.389 47.619 0.00 0.00 35.83 3.41
410 411 1.610522 AGCAACATGGCAGTTTCTGTC 59.389 47.619 0.00 0.00 36.52 3.51
417 418 3.117491 TGGCAGTTTCTGTCAGAGAAG 57.883 47.619 2.12 0.00 41.41 2.85
418 419 2.700371 TGGCAGTTTCTGTCAGAGAAGA 59.300 45.455 2.12 0.00 41.41 2.87
419 420 3.063485 GGCAGTTTCTGTCAGAGAAGAC 58.937 50.000 2.12 1.82 41.86 3.01
420 421 3.493350 GGCAGTTTCTGTCAGAGAAGACA 60.493 47.826 2.12 0.00 45.64 3.41
421 422 4.122776 GCAGTTTCTGTCAGAGAAGACAA 58.877 43.478 2.12 0.00 46.90 3.18
422 423 4.754114 GCAGTTTCTGTCAGAGAAGACAAT 59.246 41.667 2.12 0.00 46.90 2.71
423 424 5.238214 GCAGTTTCTGTCAGAGAAGACAATT 59.762 40.000 2.12 0.00 46.90 2.32
424 425 6.238593 GCAGTTTCTGTCAGAGAAGACAATTT 60.239 38.462 2.12 0.00 46.90 1.82
425 426 7.130917 CAGTTTCTGTCAGAGAAGACAATTTG 58.869 38.462 2.12 0.00 46.90 2.32
426 427 6.825721 AGTTTCTGTCAGAGAAGACAATTTGT 59.174 34.615 0.63 0.63 46.90 2.83
427 428 6.851222 TTCTGTCAGAGAAGACAATTTGTC 57.149 37.500 19.64 19.64 46.90 3.18
443 444 7.602753 ACAATTTGTCTACTTCTTTTATGGGC 58.397 34.615 0.00 0.00 0.00 5.36
444 445 7.232534 ACAATTTGTCTACTTCTTTTATGGGCA 59.767 33.333 0.00 0.00 0.00 5.36
445 446 7.961326 ATTTGTCTACTTCTTTTATGGGCAT 57.039 32.000 0.00 0.00 0.00 4.40
446 447 7.775053 TTTGTCTACTTCTTTTATGGGCATT 57.225 32.000 0.00 0.00 0.00 3.56
447 448 7.775053 TTGTCTACTTCTTTTATGGGCATTT 57.225 32.000 0.00 0.00 0.00 2.32
448 449 7.391148 TGTCTACTTCTTTTATGGGCATTTC 57.609 36.000 0.00 0.00 0.00 2.17
449 450 6.093495 TGTCTACTTCTTTTATGGGCATTTCG 59.907 38.462 0.00 0.00 0.00 3.46
450 451 4.110036 ACTTCTTTTATGGGCATTTCGC 57.890 40.909 0.00 0.00 41.28 4.70
460 461 2.652548 GCATTTCGCCGACCAATTG 58.347 52.632 0.00 0.00 32.94 2.32
461 462 0.170116 GCATTTCGCCGACCAATTGA 59.830 50.000 7.12 0.00 32.94 2.57
462 463 1.795162 GCATTTCGCCGACCAATTGAG 60.795 52.381 7.12 0.00 32.94 3.02
463 464 0.451783 ATTTCGCCGACCAATTGAGC 59.548 50.000 7.12 3.46 0.00 4.26
464 465 0.886938 TTTCGCCGACCAATTGAGCA 60.887 50.000 7.12 0.00 0.00 4.26
465 466 0.886938 TTCGCCGACCAATTGAGCAA 60.887 50.000 7.12 0.00 0.00 3.91
466 467 0.676466 TCGCCGACCAATTGAGCAAT 60.676 50.000 7.12 0.00 0.00 3.56
467 468 1.013596 CGCCGACCAATTGAGCAATA 58.986 50.000 7.12 0.00 0.00 1.90
468 469 1.400142 CGCCGACCAATTGAGCAATAA 59.600 47.619 7.12 0.00 0.00 1.40
469 470 2.033299 CGCCGACCAATTGAGCAATAAT 59.967 45.455 7.12 0.00 0.00 1.28
470 471 3.249799 CGCCGACCAATTGAGCAATAATA 59.750 43.478 7.12 0.00 0.00 0.98
471 472 4.611355 CGCCGACCAATTGAGCAATAATAG 60.611 45.833 7.12 0.00 0.00 1.73
472 473 4.275936 GCCGACCAATTGAGCAATAATAGT 59.724 41.667 7.12 0.00 0.00 2.12
473 474 5.221048 GCCGACCAATTGAGCAATAATAGTT 60.221 40.000 7.12 0.00 0.00 2.24
474 475 6.680378 GCCGACCAATTGAGCAATAATAGTTT 60.680 38.462 7.12 0.00 0.00 2.66
475 476 7.257722 CCGACCAATTGAGCAATAATAGTTTT 58.742 34.615 7.12 0.00 0.00 2.43
476 477 8.402472 CCGACCAATTGAGCAATAATAGTTTTA 58.598 33.333 7.12 0.00 0.00 1.52
477 478 9.221775 CGACCAATTGAGCAATAATAGTTTTAC 57.778 33.333 7.12 0.00 0.00 2.01
540 541 9.926158 AAAAAGGAAAAATCAAAATTGCACTTT 57.074 22.222 0.00 0.00 0.00 2.66
541 542 8.914328 AAAGGAAAAATCAAAATTGCACTTTG 57.086 26.923 12.34 12.34 35.51 2.77
542 543 7.862512 AGGAAAAATCAAAATTGCACTTTGA 57.137 28.000 20.03 20.03 44.55 2.69
543 544 7.922837 AGGAAAAATCAAAATTGCACTTTGAG 58.077 30.769 21.47 10.91 43.89 3.02
544 545 7.012610 AGGAAAAATCAAAATTGCACTTTGAGG 59.987 33.333 21.47 8.70 43.89 3.86
545 546 7.012232 GGAAAAATCAAAATTGCACTTTGAGGA 59.988 33.333 21.47 12.58 43.89 3.71
546 547 6.849588 AAATCAAAATTGCACTTTGAGGAC 57.150 33.333 21.47 0.00 43.89 3.85
547 548 5.796424 ATCAAAATTGCACTTTGAGGACT 57.204 34.783 21.47 8.20 43.89 3.85
548 549 6.899393 ATCAAAATTGCACTTTGAGGACTA 57.101 33.333 21.47 5.11 43.89 2.59
549 550 6.899393 TCAAAATTGCACTTTGAGGACTAT 57.101 33.333 15.81 0.00 37.76 2.12
550 551 6.913170 TCAAAATTGCACTTTGAGGACTATC 58.087 36.000 15.81 0.00 37.76 2.08
551 552 5.904362 AAATTGCACTTTGAGGACTATCC 57.096 39.130 0.62 0.00 36.58 2.59
552 553 4.574674 ATTGCACTTTGAGGACTATCCA 57.425 40.909 0.00 0.00 39.61 3.41
553 554 4.574674 TTGCACTTTGAGGACTATCCAT 57.425 40.909 0.00 0.00 39.61 3.41
554 555 5.692115 TTGCACTTTGAGGACTATCCATA 57.308 39.130 0.00 0.00 39.61 2.74
555 556 5.894298 TGCACTTTGAGGACTATCCATAT 57.106 39.130 0.00 0.00 39.61 1.78
556 557 5.858381 TGCACTTTGAGGACTATCCATATC 58.142 41.667 0.00 0.00 39.61 1.63
557 558 5.604231 TGCACTTTGAGGACTATCCATATCT 59.396 40.000 0.00 0.00 39.61 1.98
558 559 6.100279 TGCACTTTGAGGACTATCCATATCTT 59.900 38.462 0.00 0.00 39.61 2.40
559 560 6.648725 GCACTTTGAGGACTATCCATATCTTC 59.351 42.308 0.00 0.00 39.61 2.87
560 561 7.687837 GCACTTTGAGGACTATCCATATCTTCA 60.688 40.741 0.00 0.00 39.61 3.02
561 562 8.206867 CACTTTGAGGACTATCCATATCTTCAA 58.793 37.037 0.00 0.00 39.61 2.69
562 563 8.428063 ACTTTGAGGACTATCCATATCTTCAAG 58.572 37.037 0.00 0.00 38.96 3.02
563 564 6.352016 TGAGGACTATCCATATCTTCAAGC 57.648 41.667 0.00 0.00 39.61 4.01
564 565 5.047731 TGAGGACTATCCATATCTTCAAGCG 60.048 44.000 0.00 0.00 39.61 4.68
565 566 3.929610 GGACTATCCATATCTTCAAGCGC 59.070 47.826 0.00 0.00 36.28 5.92
566 567 3.929610 GACTATCCATATCTTCAAGCGCC 59.070 47.826 2.29 0.00 0.00 6.53
567 568 1.800805 ATCCATATCTTCAAGCGCCG 58.199 50.000 2.29 0.00 0.00 6.46
568 569 0.880278 TCCATATCTTCAAGCGCCGC 60.880 55.000 2.29 0.00 0.00 6.53
569 570 1.202568 CATATCTTCAAGCGCCGCG 59.797 57.895 8.83 8.83 0.00 6.46
570 571 1.227263 ATATCTTCAAGCGCCGCGT 60.227 52.632 15.34 0.00 0.00 6.01
571 572 0.031585 ATATCTTCAAGCGCCGCGTA 59.968 50.000 15.34 0.00 0.00 4.42
572 573 0.031585 TATCTTCAAGCGCCGCGTAT 59.968 50.000 15.34 0.21 0.00 3.06
573 574 0.810031 ATCTTCAAGCGCCGCGTATT 60.810 50.000 15.34 7.08 0.00 1.89
620 621 2.997986 ACATAAACTTTCGCGGTGGTAG 59.002 45.455 6.13 0.00 0.00 3.18
672 674 9.057089 CCCCATAAAAGTCATACATTAACTCTC 57.943 37.037 0.00 0.00 0.00 3.20
682 684 6.992123 TCATACATTAACTCTCATGCGGATTT 59.008 34.615 0.00 0.00 0.00 2.17
743 746 3.499737 GCACGCAATGGGGTCGAG 61.500 66.667 1.62 0.00 38.25 4.04
897 926 1.903877 CGTCATGGAGAGGCCTTGGT 61.904 60.000 6.77 0.00 41.08 3.67
898 927 0.107459 GTCATGGAGAGGCCTTGGTC 60.107 60.000 6.77 4.22 41.08 4.02
1104 1139 9.712305 TTTCTTGTTGTATTTCTTGTTTTTGGA 57.288 25.926 0.00 0.00 0.00 3.53
1105 1140 8.925161 TCTTGTTGTATTTCTTGTTTTTGGAG 57.075 30.769 0.00 0.00 0.00 3.86
1106 1141 8.744652 TCTTGTTGTATTTCTTGTTTTTGGAGA 58.255 29.630 0.00 0.00 0.00 3.71
1107 1142 8.925161 TTGTTGTATTTCTTGTTTTTGGAGAG 57.075 30.769 0.00 0.00 0.00 3.20
1141 1176 0.109723 TAGGGGGCATGCGGAATTAC 59.890 55.000 12.44 0.00 0.00 1.89
1145 1180 1.476110 GGGGCATGCGGAATTACTGTA 60.476 52.381 12.44 0.00 0.00 2.74
1182 1217 3.803082 CGGCTGAATGTGGGTGCG 61.803 66.667 0.00 0.00 0.00 5.34
1274 1310 9.224267 CCATATGAGGTATGAGATAAGGTTTTG 57.776 37.037 3.65 0.00 42.34 2.44
1277 1313 7.496346 TGAGGTATGAGATAAGGTTTTGACT 57.504 36.000 0.00 0.00 0.00 3.41
1278 1314 7.331026 TGAGGTATGAGATAAGGTTTTGACTG 58.669 38.462 0.00 0.00 0.00 3.51
1297 1349 7.015226 TGACTGTTATTTGTTTCACTGACAG 57.985 36.000 0.00 0.00 39.21 3.51
1326 1381 6.545666 TGACTGGATGTGTTTCTGTAATTTGT 59.454 34.615 0.00 0.00 0.00 2.83
1335 1390 9.938670 TGTGTTTCTGTAATTTGTAATGTACAC 57.061 29.630 0.00 0.00 38.63 2.90
1614 1670 5.036916 AGTAGGGGATTTGTGTGAGGATTA 58.963 41.667 0.00 0.00 0.00 1.75
1615 1671 4.236527 AGGGGATTTGTGTGAGGATTAC 57.763 45.455 0.00 0.00 0.00 1.89
1616 1672 3.852578 AGGGGATTTGTGTGAGGATTACT 59.147 43.478 0.00 0.00 0.00 2.24
1617 1673 4.080299 AGGGGATTTGTGTGAGGATTACTC 60.080 45.833 0.00 0.00 46.78 2.59
1679 1757 6.600822 TCAAGTTTGAAAATTTTCATGCCCAA 59.399 30.769 29.13 19.01 45.65 4.12
1722 1800 8.795786 TCTGCAAATTTGACAAGTTATGTTAC 57.204 30.769 22.31 0.00 44.12 2.50
1733 1812 5.529800 ACAAGTTATGTTACCCACACAGAAC 59.470 40.000 3.00 3.00 43.61 3.01
1819 1898 6.789262 ACACTGAATTTCACTGAAGAAGTTG 58.211 36.000 11.51 0.00 36.83 3.16
1821 1900 6.909357 CACTGAATTTCACTGAAGAAGTTGAC 59.091 38.462 0.00 0.00 36.83 3.18
1822 1901 6.825721 ACTGAATTTCACTGAAGAAGTTGACT 59.174 34.615 0.00 0.00 36.83 3.41
1823 1902 7.019774 TGAATTTCACTGAAGAAGTTGACTG 57.980 36.000 0.00 0.00 36.83 3.51
1824 1903 6.038603 TGAATTTCACTGAAGAAGTTGACTGG 59.961 38.462 0.00 0.00 36.83 4.00
1825 1904 4.753516 TTCACTGAAGAAGTTGACTGGA 57.246 40.909 0.00 0.00 36.83 3.86
1826 1905 4.963318 TCACTGAAGAAGTTGACTGGAT 57.037 40.909 0.00 0.00 36.83 3.41
1827 1906 5.296151 TCACTGAAGAAGTTGACTGGATT 57.704 39.130 0.00 0.00 36.83 3.01
1828 1907 6.419484 TCACTGAAGAAGTTGACTGGATTA 57.581 37.500 0.00 0.00 36.83 1.75
1829 1908 6.826668 TCACTGAAGAAGTTGACTGGATTAA 58.173 36.000 0.00 0.00 36.83 1.40
1830 1909 6.706270 TCACTGAAGAAGTTGACTGGATTAAC 59.294 38.462 0.00 0.00 36.83 2.01
1831 1910 6.483307 CACTGAAGAAGTTGACTGGATTAACA 59.517 38.462 0.00 0.00 36.83 2.41
1832 1911 6.483640 ACTGAAGAAGTTGACTGGATTAACAC 59.516 38.462 0.00 0.00 34.57 3.32
1833 1912 6.353323 TGAAGAAGTTGACTGGATTAACACA 58.647 36.000 0.00 0.00 0.00 3.72
1834 1913 6.483307 TGAAGAAGTTGACTGGATTAACACAG 59.517 38.462 6.67 6.67 40.48 3.66
1835 1914 6.174720 AGAAGTTGACTGGATTAACACAGA 57.825 37.500 13.48 0.00 38.09 3.41
1836 1915 6.591935 AGAAGTTGACTGGATTAACACAGAA 58.408 36.000 13.48 1.38 38.09 3.02
1837 1916 7.054124 AGAAGTTGACTGGATTAACACAGAAA 58.946 34.615 13.48 6.27 38.09 2.52
1885 1964 7.148407 ACACAGACTGAGTAAAACAAAGTTGAG 60.148 37.037 10.08 0.00 0.00 3.02
1905 1984 6.371809 TGAGTTGATTAACACAAACTGACC 57.628 37.500 2.93 0.00 39.30 4.02
1919 1998 3.258971 ACTGACCTGAGCATTAGAAGC 57.741 47.619 0.00 0.00 0.00 3.86
1921 2000 3.262915 ACTGACCTGAGCATTAGAAGCTT 59.737 43.478 0.00 0.00 43.58 3.74
1922 2001 4.467795 ACTGACCTGAGCATTAGAAGCTTA 59.532 41.667 0.00 0.00 43.58 3.09
1923 2002 5.016051 TGACCTGAGCATTAGAAGCTTAG 57.984 43.478 0.00 0.00 43.58 2.18
1924 2003 4.467795 TGACCTGAGCATTAGAAGCTTAGT 59.532 41.667 0.00 0.00 42.29 2.24
1925 2004 5.656859 TGACCTGAGCATTAGAAGCTTAGTA 59.343 40.000 0.00 0.00 42.29 1.82
1926 2005 5.908341 ACCTGAGCATTAGAAGCTTAGTAC 58.092 41.667 0.00 0.00 42.29 2.73
1927 2006 5.422331 ACCTGAGCATTAGAAGCTTAGTACA 59.578 40.000 0.00 0.00 42.29 2.90
1928 2007 5.751028 CCTGAGCATTAGAAGCTTAGTACAC 59.249 44.000 0.00 0.00 42.29 2.90
1929 2008 6.406400 CCTGAGCATTAGAAGCTTAGTACACT 60.406 42.308 0.00 0.00 42.29 3.55
1930 2009 6.565234 TGAGCATTAGAAGCTTAGTACACTC 58.435 40.000 0.00 4.04 43.58 3.51
1931 2010 6.378564 TGAGCATTAGAAGCTTAGTACACTCT 59.621 38.462 0.00 0.00 43.58 3.24
1932 2011 7.093727 TGAGCATTAGAAGCTTAGTACACTCTT 60.094 37.037 0.00 0.00 43.58 2.85
1933 2012 8.294954 AGCATTAGAAGCTTAGTACACTCTTA 57.705 34.615 0.00 0.00 39.87 2.10
1934 2013 8.192110 AGCATTAGAAGCTTAGTACACTCTTAC 58.808 37.037 0.00 0.00 39.87 2.34
1935 2014 8.192110 GCATTAGAAGCTTAGTACACTCTTACT 58.808 37.037 0.00 0.00 36.28 2.24
1968 2047 8.782144 CAAATTAACTTGGGCATTAACACAAAT 58.218 29.630 0.00 0.00 0.00 2.32
2028 2107 3.397482 ACTCTCATCACTGCAACAAGAC 58.603 45.455 0.00 0.00 0.00 3.01
2029 2108 3.181462 ACTCTCATCACTGCAACAAGACA 60.181 43.478 0.00 0.00 0.00 3.41
2133 2212 3.161450 GGCTCCGGACCATGGCTA 61.161 66.667 13.04 0.00 0.00 3.93
2251 2330 2.481969 GCGTCTGATGCCTGAACATCTA 60.482 50.000 10.77 0.00 45.51 1.98
2284 2363 0.039437 GACTTCTTGGCACTCGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
2322 2401 0.326264 ATTCTTCCCTCGCTGCAGTT 59.674 50.000 16.64 0.00 0.00 3.16
2411 2490 1.389106 GACTGTGCCGTACGAATTCAC 59.611 52.381 18.76 17.58 0.00 3.18
2412 2491 1.000506 ACTGTGCCGTACGAATTCACT 59.999 47.619 18.76 1.99 0.00 3.41
2432 2511 0.917533 AGGGCAGTCTGCTGATCAAT 59.082 50.000 23.68 0.66 45.28 2.57
2496 2575 4.783621 GCGTGCTCCCATGGCTCA 62.784 66.667 6.09 0.00 0.00 4.26
2528 2616 2.265739 GTGCTCACATGGCTCGGA 59.734 61.111 0.00 0.00 0.00 4.55
2583 2740 1.157751 AGGGGTGGAAGAGGAACGA 59.842 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.164865 CTGTGTGGAAGGAGCGAGCT 62.165 60.000 0.00 0.00 0.00 4.09
1 2 1.739562 CTGTGTGGAAGGAGCGAGC 60.740 63.158 0.00 0.00 0.00 5.03
2 3 1.739562 GCTGTGTGGAAGGAGCGAG 60.740 63.158 0.00 0.00 0.00 5.03
3 4 2.343758 GCTGTGTGGAAGGAGCGA 59.656 61.111 0.00 0.00 0.00 4.93
4 5 2.743928 GGCTGTGTGGAAGGAGCG 60.744 66.667 0.00 0.00 31.89 5.03
5 6 1.228245 TTGGCTGTGTGGAAGGAGC 60.228 57.895 0.00 0.00 0.00 4.70
6 7 0.607489 CCTTGGCTGTGTGGAAGGAG 60.607 60.000 0.00 0.00 37.74 3.69
7 8 1.059584 TCCTTGGCTGTGTGGAAGGA 61.060 55.000 0.00 0.00 41.37 3.36
8 9 0.178992 TTCCTTGGCTGTGTGGAAGG 60.179 55.000 0.00 0.00 36.99 3.46
9 10 1.691196 TTTCCTTGGCTGTGTGGAAG 58.309 50.000 0.00 0.00 39.39 3.46
10 11 2.238521 GATTTCCTTGGCTGTGTGGAA 58.761 47.619 0.00 0.00 36.87 3.53
11 12 1.547675 GGATTTCCTTGGCTGTGTGGA 60.548 52.381 0.00 0.00 0.00 4.02
12 13 0.890683 GGATTTCCTTGGCTGTGTGG 59.109 55.000 0.00 0.00 0.00 4.17
13 14 1.915141 AGGATTTCCTTGGCTGTGTG 58.085 50.000 0.00 0.00 46.09 3.82
26 27 4.830600 TGCCTCGGTAAAAAGAAAGGATTT 59.169 37.500 0.00 0.00 43.98 2.17
27 28 4.403734 TGCCTCGGTAAAAAGAAAGGATT 58.596 39.130 0.00 0.00 0.00 3.01
28 29 4.028993 TGCCTCGGTAAAAAGAAAGGAT 57.971 40.909 0.00 0.00 0.00 3.24
29 30 3.495434 TGCCTCGGTAAAAAGAAAGGA 57.505 42.857 0.00 0.00 0.00 3.36
30 31 4.380550 GGATTGCCTCGGTAAAAAGAAAGG 60.381 45.833 0.00 0.00 0.00 3.11
31 32 4.217550 TGGATTGCCTCGGTAAAAAGAAAG 59.782 41.667 0.00 0.00 34.31 2.62
32 33 4.145807 TGGATTGCCTCGGTAAAAAGAAA 58.854 39.130 0.00 0.00 34.31 2.52
33 34 3.757270 TGGATTGCCTCGGTAAAAAGAA 58.243 40.909 0.00 0.00 34.31 2.52
34 35 3.426787 TGGATTGCCTCGGTAAAAAGA 57.573 42.857 0.00 0.00 34.31 2.52
35 36 4.440112 GGATTGGATTGCCTCGGTAAAAAG 60.440 45.833 0.00 0.00 34.31 2.27
36 37 3.445805 GGATTGGATTGCCTCGGTAAAAA 59.554 43.478 0.00 0.00 34.31 1.94
37 38 3.020984 GGATTGGATTGCCTCGGTAAAA 58.979 45.455 0.00 0.00 34.31 1.52
38 39 2.650322 GGATTGGATTGCCTCGGTAAA 58.350 47.619 0.00 0.00 34.31 2.01
39 40 1.133915 GGGATTGGATTGCCTCGGTAA 60.134 52.381 0.00 0.00 34.31 2.85
40 41 0.472471 GGGATTGGATTGCCTCGGTA 59.528 55.000 0.00 0.00 34.31 4.02
41 42 1.227383 GGGATTGGATTGCCTCGGT 59.773 57.895 0.00 0.00 34.31 4.69
42 43 1.529244 GGGGATTGGATTGCCTCGG 60.529 63.158 0.00 0.00 34.31 4.63
43 44 0.536006 GAGGGGATTGGATTGCCTCG 60.536 60.000 0.00 0.00 34.31 4.63
44 45 0.849417 AGAGGGGATTGGATTGCCTC 59.151 55.000 0.00 0.00 34.31 4.70
45 46 1.216427 GAAGAGGGGATTGGATTGCCT 59.784 52.381 0.00 0.00 34.31 4.75
46 47 1.063717 TGAAGAGGGGATTGGATTGCC 60.064 52.381 0.00 0.00 0.00 4.52
47 48 2.027385 GTGAAGAGGGGATTGGATTGC 58.973 52.381 0.00 0.00 0.00 3.56
48 49 3.659183 AGTGAAGAGGGGATTGGATTG 57.341 47.619 0.00 0.00 0.00 2.67
49 50 3.370953 CGAAGTGAAGAGGGGATTGGATT 60.371 47.826 0.00 0.00 0.00 3.01
50 51 2.171448 CGAAGTGAAGAGGGGATTGGAT 59.829 50.000 0.00 0.00 0.00 3.41
51 52 1.555075 CGAAGTGAAGAGGGGATTGGA 59.445 52.381 0.00 0.00 0.00 3.53
52 53 2.014068 GCGAAGTGAAGAGGGGATTGG 61.014 57.143 0.00 0.00 0.00 3.16
53 54 1.373570 GCGAAGTGAAGAGGGGATTG 58.626 55.000 0.00 0.00 0.00 2.67
54 55 0.253327 GGCGAAGTGAAGAGGGGATT 59.747 55.000 0.00 0.00 0.00 3.01
55 56 0.909610 TGGCGAAGTGAAGAGGGGAT 60.910 55.000 0.00 0.00 0.00 3.85
56 57 1.535444 TGGCGAAGTGAAGAGGGGA 60.535 57.895 0.00 0.00 0.00 4.81
57 58 1.078848 CTGGCGAAGTGAAGAGGGG 60.079 63.158 0.00 0.00 0.00 4.79
58 59 0.035458 AACTGGCGAAGTGAAGAGGG 59.965 55.000 0.00 0.00 39.81 4.30
59 60 1.270305 TGAACTGGCGAAGTGAAGAGG 60.270 52.381 0.00 0.00 39.81 3.69
60 61 1.795286 GTGAACTGGCGAAGTGAAGAG 59.205 52.381 0.00 0.00 39.81 2.85
61 62 1.412710 AGTGAACTGGCGAAGTGAAGA 59.587 47.619 0.00 0.00 39.81 2.87
62 63 1.871080 AGTGAACTGGCGAAGTGAAG 58.129 50.000 0.00 0.00 39.81 3.02
63 64 2.158957 AGAAGTGAACTGGCGAAGTGAA 60.159 45.455 0.00 0.00 39.81 3.18
64 65 1.412710 AGAAGTGAACTGGCGAAGTGA 59.587 47.619 0.00 0.00 39.81 3.41
65 66 1.528586 CAGAAGTGAACTGGCGAAGTG 59.471 52.381 0.00 0.00 39.81 3.16
66 67 1.139058 ACAGAAGTGAACTGGCGAAGT 59.861 47.619 0.00 0.00 42.60 3.01
67 68 1.871080 ACAGAAGTGAACTGGCGAAG 58.129 50.000 0.00 0.00 39.38 3.79
68 69 2.210116 GAACAGAAGTGAACTGGCGAA 58.790 47.619 0.00 0.00 39.38 4.70
69 70 1.540363 GGAACAGAAGTGAACTGGCGA 60.540 52.381 0.00 0.00 39.38 5.54
70 71 0.868406 GGAACAGAAGTGAACTGGCG 59.132 55.000 0.00 0.00 39.38 5.69
71 72 1.967319 TGGAACAGAAGTGAACTGGC 58.033 50.000 0.00 0.00 39.38 4.85
84 85 0.681733 GTCAGGAGAGCACTGGAACA 59.318 55.000 0.00 0.00 36.62 3.18
85 86 0.972883 AGTCAGGAGAGCACTGGAAC 59.027 55.000 0.00 0.00 36.62 3.62
86 87 1.345741 CAAGTCAGGAGAGCACTGGAA 59.654 52.381 0.00 0.00 36.62 3.53
87 88 0.972134 CAAGTCAGGAGAGCACTGGA 59.028 55.000 0.00 0.00 36.62 3.86
88 89 0.036577 CCAAGTCAGGAGAGCACTGG 60.037 60.000 0.00 0.00 36.62 4.00
89 90 0.036577 CCCAAGTCAGGAGAGCACTG 60.037 60.000 0.00 0.00 37.30 3.66
90 91 0.472734 ACCCAAGTCAGGAGAGCACT 60.473 55.000 0.00 0.00 0.00 4.40
91 92 0.398318 AACCCAAGTCAGGAGAGCAC 59.602 55.000 0.00 0.00 0.00 4.40
92 93 0.397941 CAACCCAAGTCAGGAGAGCA 59.602 55.000 0.00 0.00 0.00 4.26
93 94 0.322008 CCAACCCAAGTCAGGAGAGC 60.322 60.000 0.00 0.00 0.00 4.09
94 95 1.352083 TCCAACCCAAGTCAGGAGAG 58.648 55.000 0.00 0.00 0.00 3.20
95 96 1.909302 GATCCAACCCAAGTCAGGAGA 59.091 52.381 0.00 0.00 34.62 3.71
96 97 1.630369 TGATCCAACCCAAGTCAGGAG 59.370 52.381 0.00 0.00 34.62 3.69
97 98 1.351017 GTGATCCAACCCAAGTCAGGA 59.649 52.381 0.00 0.00 35.34 3.86
98 99 1.614317 GGTGATCCAACCCAAGTCAGG 60.614 57.143 0.00 0.00 33.79 3.86
99 100 1.826385 GGTGATCCAACCCAAGTCAG 58.174 55.000 0.00 0.00 33.79 3.51
100 101 0.036164 CGGTGATCCAACCCAAGTCA 59.964 55.000 0.00 0.00 36.84 3.41
101 102 1.305930 GCGGTGATCCAACCCAAGTC 61.306 60.000 0.00 0.00 36.84 3.01
102 103 1.303317 GCGGTGATCCAACCCAAGT 60.303 57.895 0.00 0.00 36.84 3.16
103 104 2.398554 CGCGGTGATCCAACCCAAG 61.399 63.158 0.00 0.00 36.84 3.61
104 105 2.359354 CGCGGTGATCCAACCCAA 60.359 61.111 0.00 0.00 36.84 4.12
105 106 3.632080 ACGCGGTGATCCAACCCA 61.632 61.111 12.47 0.00 36.84 4.51
106 107 3.124921 CACGCGGTGATCCAACCC 61.125 66.667 12.47 0.00 36.84 4.11
107 108 1.908066 GAACACGCGGTGATCCAACC 61.908 60.000 12.47 0.00 36.96 3.77
108 109 1.225376 TGAACACGCGGTGATCCAAC 61.225 55.000 12.47 0.00 35.04 3.77
109 110 0.948623 CTGAACACGCGGTGATCCAA 60.949 55.000 12.47 0.00 35.04 3.53
110 111 1.374125 CTGAACACGCGGTGATCCA 60.374 57.895 12.47 6.65 35.04 3.41
111 112 2.740714 GCTGAACACGCGGTGATCC 61.741 63.158 12.47 2.58 35.04 3.36
112 113 2.778679 GCTGAACACGCGGTGATC 59.221 61.111 12.47 11.15 36.96 2.92
113 114 3.112075 CGCTGAACACGCGGTGAT 61.112 61.111 12.47 0.54 46.32 3.06
119 120 0.110644 CCTTCTTTCGCTGAACACGC 60.111 55.000 0.00 0.00 0.00 5.34
120 121 0.512952 CCCTTCTTTCGCTGAACACG 59.487 55.000 0.00 0.00 0.00 4.49
121 122 0.875059 CCCCTTCTTTCGCTGAACAC 59.125 55.000 0.00 0.00 0.00 3.32
122 123 0.472471 ACCCCTTCTTTCGCTGAACA 59.528 50.000 0.00 0.00 0.00 3.18
123 124 2.467566 TACCCCTTCTTTCGCTGAAC 57.532 50.000 0.00 0.00 0.00 3.18
124 125 2.774687 GTTACCCCTTCTTTCGCTGAA 58.225 47.619 0.00 0.00 0.00 3.02
125 126 1.337447 CGTTACCCCTTCTTTCGCTGA 60.337 52.381 0.00 0.00 0.00 4.26
126 127 1.076332 CGTTACCCCTTCTTTCGCTG 58.924 55.000 0.00 0.00 0.00 5.18
127 128 0.683412 ACGTTACCCCTTCTTTCGCT 59.317 50.000 0.00 0.00 0.00 4.93
128 129 0.794473 CACGTTACCCCTTCTTTCGC 59.206 55.000 0.00 0.00 0.00 4.70
129 130 1.435577 CCACGTTACCCCTTCTTTCG 58.564 55.000 0.00 0.00 0.00 3.46
130 131 1.162698 GCCACGTTACCCCTTCTTTC 58.837 55.000 0.00 0.00 0.00 2.62
131 132 0.475044 TGCCACGTTACCCCTTCTTT 59.525 50.000 0.00 0.00 0.00 2.52
132 133 0.250597 GTGCCACGTTACCCCTTCTT 60.251 55.000 0.00 0.00 0.00 2.52
133 134 1.125711 AGTGCCACGTTACCCCTTCT 61.126 55.000 0.00 0.00 0.00 2.85
134 135 0.953960 CAGTGCCACGTTACCCCTTC 60.954 60.000 0.00 0.00 0.00 3.46
135 136 1.072505 CAGTGCCACGTTACCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
136 137 2.747686 CAGTGCCACGTTACCCCT 59.252 61.111 0.00 0.00 0.00 4.79
137 138 3.053896 GCAGTGCCACGTTACCCC 61.054 66.667 2.85 0.00 0.00 4.95
138 139 3.419759 CGCAGTGCCACGTTACCC 61.420 66.667 10.11 0.00 0.00 3.69
139 140 3.419759 CCGCAGTGCCACGTTACC 61.420 66.667 10.11 0.00 0.00 2.85
140 141 1.778027 AAACCGCAGTGCCACGTTAC 61.778 55.000 10.11 0.00 0.00 2.50
141 142 1.096386 AAAACCGCAGTGCCACGTTA 61.096 50.000 10.11 0.00 0.00 3.18
142 143 2.331019 GAAAACCGCAGTGCCACGTT 62.331 55.000 10.11 6.79 0.00 3.99
143 144 2.826738 AAAACCGCAGTGCCACGT 60.827 55.556 10.11 0.00 0.00 4.49
144 145 2.051345 GAAAACCGCAGTGCCACG 60.051 61.111 10.11 0.00 0.00 4.94
145 146 2.335011 GGAAAACCGCAGTGCCAC 59.665 61.111 10.11 0.00 0.00 5.01
146 147 2.909965 GGGAAAACCGCAGTGCCA 60.910 61.111 10.11 0.00 0.00 4.92
147 148 1.744320 AAAGGGAAAACCGCAGTGCC 61.744 55.000 10.11 0.00 46.96 5.01
148 149 0.104120 AAAAGGGAAAACCGCAGTGC 59.896 50.000 4.58 4.58 46.96 4.40
149 150 1.537990 CCAAAAGGGAAAACCGCAGTG 60.538 52.381 0.00 0.00 46.96 3.66
150 151 0.750249 CCAAAAGGGAAAACCGCAGT 59.250 50.000 0.00 0.00 46.96 4.40
151 152 0.033366 CCCAAAAGGGAAAACCGCAG 59.967 55.000 0.00 0.00 46.96 5.18
152 153 2.034048 GCCCAAAAGGGAAAACCGCA 62.034 55.000 4.37 0.00 46.96 5.69
153 154 1.301401 GCCCAAAAGGGAAAACCGC 60.301 57.895 4.37 0.00 46.96 5.68
154 155 1.369692 GGCCCAAAAGGGAAAACCG 59.630 57.895 4.37 0.00 46.96 4.44
155 156 1.116536 TCGGCCCAAAAGGGAAAACC 61.117 55.000 4.37 0.00 40.01 3.27
156 157 0.753867 TTCGGCCCAAAAGGGAAAAC 59.246 50.000 4.37 0.00 40.01 2.43
157 158 1.346068 CATTCGGCCCAAAAGGGAAAA 59.654 47.619 4.37 0.00 40.01 2.29
158 159 0.972883 CATTCGGCCCAAAAGGGAAA 59.027 50.000 4.37 0.00 40.01 3.13
159 160 0.902516 CCATTCGGCCCAAAAGGGAA 60.903 55.000 4.37 0.00 40.01 3.97
160 161 1.304879 CCATTCGGCCCAAAAGGGA 60.305 57.895 4.37 0.00 40.01 4.20
161 162 1.304879 TCCATTCGGCCCAAAAGGG 60.305 57.895 0.00 0.23 35.41 3.95
162 163 1.890174 GTCCATTCGGCCCAAAAGG 59.110 57.895 0.00 0.00 39.47 3.11
163 164 1.241315 ACGTCCATTCGGCCCAAAAG 61.241 55.000 0.00 0.00 34.94 2.27
164 165 0.824182 AACGTCCATTCGGCCCAAAA 60.824 50.000 0.00 0.00 34.94 2.44
165 166 1.228306 AACGTCCATTCGGCCCAAA 60.228 52.632 0.00 0.00 34.94 3.28
166 167 1.673009 GAACGTCCATTCGGCCCAA 60.673 57.895 0.00 0.00 34.94 4.12
167 168 2.046700 GAACGTCCATTCGGCCCA 60.047 61.111 0.00 0.00 34.94 5.36
168 169 3.192922 CGAACGTCCATTCGGCCC 61.193 66.667 0.00 0.00 46.10 5.80
173 174 2.005971 AGCCTAACGAACGTCCATTC 57.994 50.000 0.00 0.00 0.00 2.67
174 175 2.467566 AAGCCTAACGAACGTCCATT 57.532 45.000 0.00 0.00 0.00 3.16
175 176 2.467566 AAAGCCTAACGAACGTCCAT 57.532 45.000 0.00 0.00 0.00 3.41
176 177 1.868498 CAAAAGCCTAACGAACGTCCA 59.132 47.619 0.00 0.00 0.00 4.02
177 178 1.869132 ACAAAAGCCTAACGAACGTCC 59.131 47.619 0.00 0.00 0.00 4.79
178 179 3.597377 AACAAAAGCCTAACGAACGTC 57.403 42.857 0.00 0.00 0.00 4.34
179 180 5.678132 ATAAACAAAAGCCTAACGAACGT 57.322 34.783 0.00 0.00 0.00 3.99
180 181 6.633634 TGAAATAAACAAAAGCCTAACGAACG 59.366 34.615 0.00 0.00 0.00 3.95
181 182 7.646526 ACTGAAATAAACAAAAGCCTAACGAAC 59.353 33.333 0.00 0.00 0.00 3.95
182 183 7.708998 ACTGAAATAAACAAAAGCCTAACGAA 58.291 30.769 0.00 0.00 0.00 3.85
183 184 7.266922 ACTGAAATAAACAAAAGCCTAACGA 57.733 32.000 0.00 0.00 0.00 3.85
184 185 7.096230 CCAACTGAAATAAACAAAAGCCTAACG 60.096 37.037 0.00 0.00 0.00 3.18
185 186 7.170828 CCCAACTGAAATAAACAAAAGCCTAAC 59.829 37.037 0.00 0.00 0.00 2.34
186 187 7.213678 CCCAACTGAAATAAACAAAAGCCTAA 58.786 34.615 0.00 0.00 0.00 2.69
187 188 6.740122 GCCCAACTGAAATAAACAAAAGCCTA 60.740 38.462 0.00 0.00 0.00 3.93
188 189 5.610398 CCCAACTGAAATAAACAAAAGCCT 58.390 37.500 0.00 0.00 0.00 4.58
189 190 4.213270 GCCCAACTGAAATAAACAAAAGCC 59.787 41.667 0.00 0.00 0.00 4.35
190 191 4.213270 GGCCCAACTGAAATAAACAAAAGC 59.787 41.667 0.00 0.00 0.00 3.51
191 192 5.363939 TGGCCCAACTGAAATAAACAAAAG 58.636 37.500 0.00 0.00 0.00 2.27
192 193 5.359194 TGGCCCAACTGAAATAAACAAAA 57.641 34.783 0.00 0.00 0.00 2.44
193 194 4.742138 GCTGGCCCAACTGAAATAAACAAA 60.742 41.667 0.00 0.00 0.00 2.83
194 195 3.244044 GCTGGCCCAACTGAAATAAACAA 60.244 43.478 0.00 0.00 0.00 2.83
195 196 2.298729 GCTGGCCCAACTGAAATAAACA 59.701 45.455 0.00 0.00 0.00 2.83
196 197 2.562738 AGCTGGCCCAACTGAAATAAAC 59.437 45.455 0.00 0.00 0.00 2.01
197 198 2.888212 AGCTGGCCCAACTGAAATAAA 58.112 42.857 0.00 0.00 0.00 1.40
198 199 2.603075 AGCTGGCCCAACTGAAATAA 57.397 45.000 0.00 0.00 0.00 1.40
199 200 2.576191 ACTAGCTGGCCCAACTGAAATA 59.424 45.455 0.00 0.00 0.00 1.40
200 201 1.355720 ACTAGCTGGCCCAACTGAAAT 59.644 47.619 0.00 0.00 0.00 2.17
201 202 0.771127 ACTAGCTGGCCCAACTGAAA 59.229 50.000 0.00 0.00 0.00 2.69
202 203 0.771127 AACTAGCTGGCCCAACTGAA 59.229 50.000 0.00 0.00 0.00 3.02
203 204 0.771127 AAACTAGCTGGCCCAACTGA 59.229 50.000 0.00 0.00 0.00 3.41
204 205 1.620822 AAAACTAGCTGGCCCAACTG 58.379 50.000 0.00 0.00 0.00 3.16
205 206 3.739401 ATAAAACTAGCTGGCCCAACT 57.261 42.857 0.00 0.00 0.00 3.16
206 207 4.017126 AGAATAAAACTAGCTGGCCCAAC 58.983 43.478 0.00 0.00 0.00 3.77
207 208 4.018415 AGAGAATAAAACTAGCTGGCCCAA 60.018 41.667 0.00 0.00 0.00 4.12
208 209 3.523564 AGAGAATAAAACTAGCTGGCCCA 59.476 43.478 0.00 0.00 0.00 5.36
209 210 4.130857 GAGAGAATAAAACTAGCTGGCCC 58.869 47.826 0.00 0.00 0.00 5.80
210 211 5.029807 AGAGAGAATAAAACTAGCTGGCC 57.970 43.478 0.00 0.00 0.00 5.36
211 212 5.912892 AGAGAGAGAATAAAACTAGCTGGC 58.087 41.667 0.00 0.00 0.00 4.85
212 213 7.147915 ACAGAGAGAGAGAATAAAACTAGCTGG 60.148 40.741 0.00 0.00 0.00 4.85
213 214 7.771183 ACAGAGAGAGAGAATAAAACTAGCTG 58.229 38.462 0.00 0.00 0.00 4.24
214 215 7.834181 AGACAGAGAGAGAGAATAAAACTAGCT 59.166 37.037 0.00 0.00 0.00 3.32
215 216 7.996385 AGACAGAGAGAGAGAATAAAACTAGC 58.004 38.462 0.00 0.00 0.00 3.42
216 217 9.396022 AGAGACAGAGAGAGAGAATAAAACTAG 57.604 37.037 0.00 0.00 0.00 2.57
217 218 9.391006 GAGAGACAGAGAGAGAGAATAAAACTA 57.609 37.037 0.00 0.00 0.00 2.24
218 219 7.065803 CGAGAGACAGAGAGAGAGAATAAAACT 59.934 40.741 0.00 0.00 0.00 2.66
219 220 7.148306 ACGAGAGACAGAGAGAGAGAATAAAAC 60.148 40.741 0.00 0.00 0.00 2.43
220 221 6.882140 ACGAGAGACAGAGAGAGAGAATAAAA 59.118 38.462 0.00 0.00 0.00 1.52
221 222 6.411376 ACGAGAGACAGAGAGAGAGAATAAA 58.589 40.000 0.00 0.00 0.00 1.40
222 223 5.984725 ACGAGAGACAGAGAGAGAGAATAA 58.015 41.667 0.00 0.00 0.00 1.40
223 224 5.607939 ACGAGAGACAGAGAGAGAGAATA 57.392 43.478 0.00 0.00 0.00 1.75
224 225 4.487714 ACGAGAGACAGAGAGAGAGAAT 57.512 45.455 0.00 0.00 0.00 2.40
225 226 3.973206 ACGAGAGACAGAGAGAGAGAA 57.027 47.619 0.00 0.00 0.00 2.87
226 227 5.356426 CAATACGAGAGACAGAGAGAGAGA 58.644 45.833 0.00 0.00 0.00 3.10
227 228 4.024893 GCAATACGAGAGACAGAGAGAGAG 60.025 50.000 0.00 0.00 0.00 3.20
228 229 3.874543 GCAATACGAGAGACAGAGAGAGA 59.125 47.826 0.00 0.00 0.00 3.10
229 230 3.003275 GGCAATACGAGAGACAGAGAGAG 59.997 52.174 0.00 0.00 0.00 3.20
230 231 2.946329 GGCAATACGAGAGACAGAGAGA 59.054 50.000 0.00 0.00 0.00 3.10
231 232 2.034053 GGGCAATACGAGAGACAGAGAG 59.966 54.545 0.00 0.00 0.00 3.20
232 233 2.025155 GGGCAATACGAGAGACAGAGA 58.975 52.381 0.00 0.00 0.00 3.10
233 234 1.751351 TGGGCAATACGAGAGACAGAG 59.249 52.381 0.00 0.00 0.00 3.35
234 235 1.847328 TGGGCAATACGAGAGACAGA 58.153 50.000 0.00 0.00 0.00 3.41
235 236 2.672961 TTGGGCAATACGAGAGACAG 57.327 50.000 0.00 0.00 0.00 3.51
236 237 2.037902 TGTTTGGGCAATACGAGAGACA 59.962 45.455 0.00 0.00 0.00 3.41
237 238 2.695359 TGTTTGGGCAATACGAGAGAC 58.305 47.619 0.00 0.00 0.00 3.36
238 239 3.627395 ATGTTTGGGCAATACGAGAGA 57.373 42.857 0.00 0.00 0.00 3.10
239 240 4.396166 AGAAATGTTTGGGCAATACGAGAG 59.604 41.667 0.00 0.00 0.00 3.20
240 241 4.331968 AGAAATGTTTGGGCAATACGAGA 58.668 39.130 0.00 0.00 0.00 4.04
241 242 4.701956 AGAAATGTTTGGGCAATACGAG 57.298 40.909 0.00 0.00 0.00 4.18
242 243 5.010112 TCAAAGAAATGTTTGGGCAATACGA 59.990 36.000 3.57 0.00 37.89 3.43
243 244 5.226396 TCAAAGAAATGTTTGGGCAATACG 58.774 37.500 3.57 0.00 37.89 3.06
244 245 7.099120 AGATCAAAGAAATGTTTGGGCAATAC 58.901 34.615 0.00 0.00 37.89 1.89
245 246 7.243604 AGATCAAAGAAATGTTTGGGCAATA 57.756 32.000 0.00 0.00 37.89 1.90
246 247 6.117975 AGATCAAAGAAATGTTTGGGCAAT 57.882 33.333 0.00 0.00 37.89 3.56
247 248 5.549742 AGATCAAAGAAATGTTTGGGCAA 57.450 34.783 0.00 0.00 37.89 4.52
248 249 5.549742 AAGATCAAAGAAATGTTTGGGCA 57.450 34.783 0.00 0.00 37.89 5.36
249 250 7.961325 TTTAAGATCAAAGAAATGTTTGGGC 57.039 32.000 0.00 0.00 37.89 5.36
279 280 8.537016 GCTAAAGGGGTCCTTATTTTGTTATTT 58.463 33.333 0.00 0.00 43.92 1.40
280 281 7.899172 AGCTAAAGGGGTCCTTATTTTGTTATT 59.101 33.333 0.00 0.00 43.92 1.40
281 282 7.342026 CAGCTAAAGGGGTCCTTATTTTGTTAT 59.658 37.037 0.00 0.00 43.92 1.89
282 283 6.661805 CAGCTAAAGGGGTCCTTATTTTGTTA 59.338 38.462 0.00 0.00 43.92 2.41
283 284 5.480422 CAGCTAAAGGGGTCCTTATTTTGTT 59.520 40.000 0.00 0.00 43.92 2.83
284 285 5.016831 CAGCTAAAGGGGTCCTTATTTTGT 58.983 41.667 0.00 0.00 43.92 2.83
285 286 4.402474 CCAGCTAAAGGGGTCCTTATTTTG 59.598 45.833 0.00 0.00 43.92 2.44
286 287 4.610333 CCAGCTAAAGGGGTCCTTATTTT 58.390 43.478 0.00 0.00 43.92 1.82
287 288 3.627492 GCCAGCTAAAGGGGTCCTTATTT 60.627 47.826 0.00 0.00 43.92 1.40
288 289 2.091830 GCCAGCTAAAGGGGTCCTTATT 60.092 50.000 0.00 0.00 43.92 1.40
289 290 1.495148 GCCAGCTAAAGGGGTCCTTAT 59.505 52.381 0.00 0.00 43.92 1.73
290 291 0.916809 GCCAGCTAAAGGGGTCCTTA 59.083 55.000 0.00 0.00 43.92 2.69
292 293 2.670148 CGCCAGCTAAAGGGGTCCT 61.670 63.158 0.00 0.00 34.64 3.85
293 294 2.124695 CGCCAGCTAAAGGGGTCC 60.125 66.667 0.00 0.00 34.64 4.46
294 295 1.153349 CTCGCCAGCTAAAGGGGTC 60.153 63.158 5.66 0.00 39.83 4.46
295 296 2.990479 CTCGCCAGCTAAAGGGGT 59.010 61.111 5.66 0.00 39.83 4.95
296 297 2.514824 GCTCGCCAGCTAAAGGGG 60.515 66.667 0.00 0.00 43.09 4.79
297 298 2.892425 CGCTCGCCAGCTAAAGGG 60.892 66.667 0.79 0.00 44.40 3.95
298 299 3.567797 GCGCTCGCCAGCTAAAGG 61.568 66.667 0.00 0.00 44.40 3.11
299 300 2.510238 AGCGCTCGCCAGCTAAAG 60.510 61.111 2.64 0.00 44.40 1.85
300 301 2.509336 GAGCGCTCGCCAGCTAAA 60.509 61.111 23.61 0.00 44.69 1.85
301 302 4.854784 CGAGCGCTCGCCAGCTAA 62.855 66.667 42.50 0.00 46.50 3.09
314 315 4.785453 CACCCCCTCCTTGCGAGC 62.785 72.222 0.00 0.00 37.27 5.03
315 316 4.101448 CCACCCCCTCCTTGCGAG 62.101 72.222 0.00 0.00 38.46 5.03
318 319 3.607084 AATGCCACCCCCTCCTTGC 62.607 63.158 0.00 0.00 0.00 4.01
319 320 1.683365 CAATGCCACCCCCTCCTTG 60.683 63.158 0.00 0.00 0.00 3.61
320 321 2.772924 CAATGCCACCCCCTCCTT 59.227 61.111 0.00 0.00 0.00 3.36
321 322 3.350163 CCAATGCCACCCCCTCCT 61.350 66.667 0.00 0.00 0.00 3.69
326 327 2.759560 ATTCGCCAATGCCACCCC 60.760 61.111 0.00 0.00 0.00 4.95
327 328 2.495866 CATTCGCCAATGCCACCC 59.504 61.111 0.00 0.00 33.19 4.61
328 329 1.887344 AACCATTCGCCAATGCCACC 61.887 55.000 0.00 0.00 38.53 4.61
329 330 0.037419 AAACCATTCGCCAATGCCAC 60.037 50.000 0.00 0.00 38.53 5.01
330 331 0.246086 GAAACCATTCGCCAATGCCA 59.754 50.000 0.00 0.00 38.53 4.92
331 332 0.532115 AGAAACCATTCGCCAATGCC 59.468 50.000 0.00 0.00 40.63 4.40
332 333 1.474077 AGAGAAACCATTCGCCAATGC 59.526 47.619 0.00 0.00 40.63 3.56
333 334 3.242870 GCTAGAGAAACCATTCGCCAATG 60.243 47.826 0.00 0.00 40.63 2.82
334 335 2.945668 GCTAGAGAAACCATTCGCCAAT 59.054 45.455 0.00 0.00 40.63 3.16
335 336 2.290008 TGCTAGAGAAACCATTCGCCAA 60.290 45.455 0.00 0.00 40.63 4.52
336 337 1.277842 TGCTAGAGAAACCATTCGCCA 59.722 47.619 0.00 0.00 40.63 5.69
337 338 2.024176 TGCTAGAGAAACCATTCGCC 57.976 50.000 0.00 0.00 40.63 5.54
338 339 4.622701 AAATGCTAGAGAAACCATTCGC 57.377 40.909 0.00 0.00 40.63 4.70
358 359 2.161410 CGACATCCATCGCAAGGAAAAA 59.839 45.455 0.00 0.00 38.93 1.94
359 360 1.737236 CGACATCCATCGCAAGGAAAA 59.263 47.619 0.00 0.00 38.93 2.29
360 361 1.368641 CGACATCCATCGCAAGGAAA 58.631 50.000 0.00 0.00 38.93 3.13
361 362 0.461870 CCGACATCCATCGCAAGGAA 60.462 55.000 0.00 0.00 40.87 3.36
362 363 1.143838 CCGACATCCATCGCAAGGA 59.856 57.895 0.00 0.00 40.87 3.36
363 364 0.744414 AACCGACATCCATCGCAAGG 60.744 55.000 0.00 0.00 40.87 3.61
364 365 1.593006 GTAACCGACATCCATCGCAAG 59.407 52.381 0.00 0.00 40.87 4.01
365 366 1.206132 AGTAACCGACATCCATCGCAA 59.794 47.619 0.00 0.00 40.87 4.85
366 367 0.821517 AGTAACCGACATCCATCGCA 59.178 50.000 0.00 0.00 40.87 5.10
367 368 1.935933 AAGTAACCGACATCCATCGC 58.064 50.000 0.00 0.00 40.87 4.58
368 369 4.928601 TCTAAAGTAACCGACATCCATCG 58.071 43.478 0.00 0.00 41.89 3.84
369 370 4.745620 GCTCTAAAGTAACCGACATCCATC 59.254 45.833 0.00 0.00 0.00 3.51
370 371 4.161565 TGCTCTAAAGTAACCGACATCCAT 59.838 41.667 0.00 0.00 0.00 3.41
371 372 3.512329 TGCTCTAAAGTAACCGACATCCA 59.488 43.478 0.00 0.00 0.00 3.41
372 373 4.119442 TGCTCTAAAGTAACCGACATCC 57.881 45.455 0.00 0.00 0.00 3.51
373 374 4.927425 TGTTGCTCTAAAGTAACCGACATC 59.073 41.667 4.35 0.00 44.70 3.06
374 375 4.890088 TGTTGCTCTAAAGTAACCGACAT 58.110 39.130 4.35 0.00 44.70 3.06
375 376 4.325028 TGTTGCTCTAAAGTAACCGACA 57.675 40.909 4.35 0.00 44.70 4.35
376 377 4.092968 CCATGTTGCTCTAAAGTAACCGAC 59.907 45.833 4.35 0.00 44.70 4.79
377 378 4.250464 CCATGTTGCTCTAAAGTAACCGA 58.750 43.478 4.35 0.00 44.70 4.69
378 379 3.181510 GCCATGTTGCTCTAAAGTAACCG 60.182 47.826 4.35 0.00 44.70 4.44
379 380 3.756434 TGCCATGTTGCTCTAAAGTAACC 59.244 43.478 4.35 0.00 44.70 2.85
380 381 4.455877 ACTGCCATGTTGCTCTAAAGTAAC 59.544 41.667 0.00 0.21 45.30 2.50
381 382 4.651778 ACTGCCATGTTGCTCTAAAGTAA 58.348 39.130 0.00 0.00 0.00 2.24
382 383 4.286297 ACTGCCATGTTGCTCTAAAGTA 57.714 40.909 0.00 0.00 0.00 2.24
383 384 3.146104 ACTGCCATGTTGCTCTAAAGT 57.854 42.857 0.00 0.00 0.00 2.66
384 385 4.217118 AGAAACTGCCATGTTGCTCTAAAG 59.783 41.667 0.00 0.00 30.35 1.85
385 386 4.022935 CAGAAACTGCCATGTTGCTCTAAA 60.023 41.667 0.00 0.00 33.78 1.85
386 387 3.503363 CAGAAACTGCCATGTTGCTCTAA 59.497 43.478 0.00 0.00 33.78 2.10
387 388 3.076621 CAGAAACTGCCATGTTGCTCTA 58.923 45.455 0.00 0.00 33.78 2.43
388 389 1.884579 CAGAAACTGCCATGTTGCTCT 59.115 47.619 0.00 0.00 33.78 4.09
389 390 1.610522 ACAGAAACTGCCATGTTGCTC 59.389 47.619 0.00 0.00 33.78 4.26
390 391 1.610522 GACAGAAACTGCCATGTTGCT 59.389 47.619 0.00 0.00 36.31 3.91
391 392 1.337703 TGACAGAAACTGCCATGTTGC 59.662 47.619 0.00 0.00 34.37 4.17
392 393 2.880268 TCTGACAGAAACTGCCATGTTG 59.120 45.455 1.64 0.00 34.37 3.33
393 394 3.144506 CTCTGACAGAAACTGCCATGTT 58.855 45.455 6.61 0.00 34.37 2.71
394 395 2.369860 TCTCTGACAGAAACTGCCATGT 59.630 45.455 6.61 0.00 34.37 3.21
395 396 3.049708 TCTCTGACAGAAACTGCCATG 57.950 47.619 6.61 0.00 34.37 3.66
396 397 3.326006 TCTTCTCTGACAGAAACTGCCAT 59.674 43.478 6.61 0.00 40.83 4.40
397 398 2.700371 TCTTCTCTGACAGAAACTGCCA 59.300 45.455 6.61 0.00 40.83 4.92
398 399 3.063485 GTCTTCTCTGACAGAAACTGCC 58.937 50.000 6.61 0.00 40.83 4.85
399 400 3.722147 TGTCTTCTCTGACAGAAACTGC 58.278 45.455 6.61 0.00 40.83 4.40
400 401 6.857777 AATTGTCTTCTCTGACAGAAACTG 57.142 37.500 6.61 0.00 46.02 3.16
401 402 6.825721 ACAAATTGTCTTCTCTGACAGAAACT 59.174 34.615 6.61 0.00 46.02 2.66
402 403 7.020914 ACAAATTGTCTTCTCTGACAGAAAC 57.979 36.000 6.61 3.72 46.02 2.78
403 404 7.251704 GACAAATTGTCTTCTCTGACAGAAA 57.748 36.000 18.03 3.68 46.02 2.52
404 405 6.851222 GACAAATTGTCTTCTCTGACAGAA 57.149 37.500 18.03 0.00 46.02 3.02
418 419 7.232534 TGCCCATAAAAGAAGTAGACAAATTGT 59.767 33.333 0.00 0.00 0.00 2.71
419 420 7.601856 TGCCCATAAAAGAAGTAGACAAATTG 58.398 34.615 0.00 0.00 0.00 2.32
420 421 7.775053 TGCCCATAAAAGAAGTAGACAAATT 57.225 32.000 0.00 0.00 0.00 1.82
421 422 7.961326 ATGCCCATAAAAGAAGTAGACAAAT 57.039 32.000 0.00 0.00 0.00 2.32
422 423 7.775053 AATGCCCATAAAAGAAGTAGACAAA 57.225 32.000 0.00 0.00 0.00 2.83
423 424 7.361713 CGAAATGCCCATAAAAGAAGTAGACAA 60.362 37.037 0.00 0.00 0.00 3.18
424 425 6.093495 CGAAATGCCCATAAAAGAAGTAGACA 59.907 38.462 0.00 0.00 0.00 3.41
425 426 6.487103 CGAAATGCCCATAAAAGAAGTAGAC 58.513 40.000 0.00 0.00 0.00 2.59
426 427 5.065988 GCGAAATGCCCATAAAAGAAGTAGA 59.934 40.000 0.00 0.00 37.76 2.59
427 428 5.273944 GCGAAATGCCCATAAAAGAAGTAG 58.726 41.667 0.00 0.00 37.76 2.57
428 429 5.243426 GCGAAATGCCCATAAAAGAAGTA 57.757 39.130 0.00 0.00 37.76 2.24
429 430 4.110036 GCGAAATGCCCATAAAAGAAGT 57.890 40.909 0.00 0.00 37.76 3.01
442 443 0.170116 TCAATTGGTCGGCGAAATGC 59.830 50.000 12.92 0.00 45.38 3.56
443 444 1.795162 GCTCAATTGGTCGGCGAAATG 60.795 52.381 12.92 6.74 0.00 2.32
444 445 0.451783 GCTCAATTGGTCGGCGAAAT 59.548 50.000 12.92 6.00 0.00 2.17
445 446 0.886938 TGCTCAATTGGTCGGCGAAA 60.887 50.000 12.92 3.20 0.00 3.46
446 447 0.886938 TTGCTCAATTGGTCGGCGAA 60.887 50.000 12.92 0.00 0.00 4.70
447 448 0.676466 ATTGCTCAATTGGTCGGCGA 60.676 50.000 4.99 4.99 0.00 5.54
448 449 1.013596 TATTGCTCAATTGGTCGGCG 58.986 50.000 5.42 0.00 32.50 6.46
449 450 3.715628 ATTATTGCTCAATTGGTCGGC 57.284 42.857 5.42 6.19 32.50 5.54
450 451 6.377327 AACTATTATTGCTCAATTGGTCGG 57.623 37.500 5.42 0.00 32.50 4.79
451 452 9.221775 GTAAAACTATTATTGCTCAATTGGTCG 57.778 33.333 5.42 0.00 32.50 4.79
514 515 9.926158 AAAGTGCAATTTTGATTTTTCCTTTTT 57.074 22.222 6.26 0.00 0.00 1.94
515 516 9.356433 CAAAGTGCAATTTTGATTTTTCCTTTT 57.644 25.926 9.83 0.00 45.19 2.27
516 517 8.738106 TCAAAGTGCAATTTTGATTTTTCCTTT 58.262 25.926 18.58 4.06 45.80 3.11
517 518 8.278729 TCAAAGTGCAATTTTGATTTTTCCTT 57.721 26.923 18.58 0.00 45.80 3.36
518 519 7.862512 TCAAAGTGCAATTTTGATTTTTCCT 57.137 28.000 18.58 0.00 45.80 3.36
527 528 6.095377 GGATAGTCCTCAAAGTGCAATTTTG 58.905 40.000 9.83 13.22 43.92 2.44
528 529 5.774690 TGGATAGTCCTCAAAGTGCAATTTT 59.225 36.000 9.83 0.15 37.46 1.82
529 530 5.324409 TGGATAGTCCTCAAAGTGCAATTT 58.676 37.500 6.26 6.26 37.46 1.82
530 531 4.922206 TGGATAGTCCTCAAAGTGCAATT 58.078 39.130 0.00 0.00 37.46 2.32
531 532 4.574674 TGGATAGTCCTCAAAGTGCAAT 57.425 40.909 0.00 0.00 37.46 3.56
532 533 4.574674 ATGGATAGTCCTCAAAGTGCAA 57.425 40.909 0.00 0.00 37.46 4.08
533 534 5.604231 AGATATGGATAGTCCTCAAAGTGCA 59.396 40.000 0.00 0.00 37.46 4.57
534 535 6.107901 AGATATGGATAGTCCTCAAAGTGC 57.892 41.667 0.00 0.00 37.46 4.40
535 536 7.730084 TGAAGATATGGATAGTCCTCAAAGTG 58.270 38.462 0.00 0.00 37.46 3.16
536 537 7.921041 TGAAGATATGGATAGTCCTCAAAGT 57.079 36.000 0.00 0.00 37.46 2.66
537 538 7.387397 GCTTGAAGATATGGATAGTCCTCAAAG 59.613 40.741 0.00 0.00 37.46 2.77
538 539 7.220030 GCTTGAAGATATGGATAGTCCTCAAA 58.780 38.462 0.00 0.00 37.46 2.69
539 540 6.517362 CGCTTGAAGATATGGATAGTCCTCAA 60.517 42.308 0.00 0.00 37.46 3.02
540 541 5.047731 CGCTTGAAGATATGGATAGTCCTCA 60.048 44.000 0.00 0.00 37.46 3.86
541 542 5.406649 CGCTTGAAGATATGGATAGTCCTC 58.593 45.833 0.00 0.00 37.46 3.71
542 543 4.322349 GCGCTTGAAGATATGGATAGTCCT 60.322 45.833 0.00 0.00 37.46 3.85
543 544 3.929610 GCGCTTGAAGATATGGATAGTCC 59.070 47.826 0.00 0.00 36.96 3.85
544 545 3.929610 GGCGCTTGAAGATATGGATAGTC 59.070 47.826 7.64 0.00 0.00 2.59
545 546 3.615110 CGGCGCTTGAAGATATGGATAGT 60.615 47.826 7.64 0.00 0.00 2.12
546 547 2.926200 CGGCGCTTGAAGATATGGATAG 59.074 50.000 7.64 0.00 0.00 2.08
547 548 2.930887 GCGGCGCTTGAAGATATGGATA 60.931 50.000 26.86 0.00 0.00 2.59
548 549 1.800805 CGGCGCTTGAAGATATGGAT 58.199 50.000 7.64 0.00 0.00 3.41
549 550 0.880278 GCGGCGCTTGAAGATATGGA 60.880 55.000 26.86 0.00 0.00 3.41
550 551 1.571460 GCGGCGCTTGAAGATATGG 59.429 57.895 26.86 0.00 0.00 2.74
551 552 1.202568 CGCGGCGCTTGAAGATATG 59.797 57.895 30.54 5.96 0.00 1.78
552 553 0.031585 TACGCGGCGCTTGAAGATAT 59.968 50.000 30.54 0.69 0.00 1.63
553 554 0.031585 ATACGCGGCGCTTGAAGATA 59.968 50.000 30.54 4.29 0.00 1.98
554 555 0.810031 AATACGCGGCGCTTGAAGAT 60.810 50.000 30.54 7.99 0.00 2.40
555 556 1.017177 AAATACGCGGCGCTTGAAGA 61.017 50.000 30.54 5.56 0.00 2.87
556 557 0.179200 AAAATACGCGGCGCTTGAAG 60.179 50.000 30.54 16.27 0.00 3.02
557 558 0.453615 CAAAATACGCGGCGCTTGAA 60.454 50.000 30.54 12.42 0.00 2.69
558 559 1.133664 CAAAATACGCGGCGCTTGA 59.866 52.632 30.54 14.96 0.00 3.02
559 560 0.095589 TACAAAATACGCGGCGCTTG 59.904 50.000 30.54 26.53 0.00 4.01
560 561 0.372334 CTACAAAATACGCGGCGCTT 59.628 50.000 30.54 23.91 0.00 4.68
561 562 0.458889 TCTACAAAATACGCGGCGCT 60.459 50.000 30.54 18.74 0.00 5.92
562 563 0.043310 CTCTACAAAATACGCGGCGC 60.043 55.000 24.21 24.21 0.00 6.53
563 564 1.274596 ACTCTACAAAATACGCGGCG 58.725 50.000 22.36 22.36 0.00 6.46
564 565 4.845621 TTAACTCTACAAAATACGCGGC 57.154 40.909 12.47 0.00 0.00 6.53
565 566 7.842721 GTGTAATTAACTCTACAAAATACGCGG 59.157 37.037 12.47 0.00 30.11 6.46
566 567 7.842721 GGTGTAATTAACTCTACAAAATACGCG 59.157 37.037 3.53 3.53 30.11 6.01
567 568 8.876790 AGGTGTAATTAACTCTACAAAATACGC 58.123 33.333 0.00 0.00 30.11 4.42
571 572 9.901172 CCCTAGGTGTAATTAACTCTACAAAAT 57.099 33.333 8.29 0.00 30.11 1.82
572 573 8.883302 ACCCTAGGTGTAATTAACTCTACAAAA 58.117 33.333 8.29 0.00 32.98 2.44
573 574 8.439964 ACCCTAGGTGTAATTAACTCTACAAA 57.560 34.615 8.29 0.00 32.98 2.83
646 647 8.980481 AGAGTTAATGTATGACTTTTATGGGG 57.020 34.615 0.00 0.00 0.00 4.96
647 648 9.613428 TGAGAGTTAATGTATGACTTTTATGGG 57.387 33.333 0.00 0.00 0.00 4.00
672 674 4.614555 TTGTAGCTAACAAATCCGCATG 57.385 40.909 0.00 0.00 45.11 4.06
682 684 2.550180 TGCATGCGTTTTGTAGCTAACA 59.450 40.909 14.09 0.00 35.88 2.41
722 725 4.634703 ACCCCATTGCGTGCGTGA 62.635 61.111 0.00 0.00 0.00 4.35
742 745 5.818136 AAAGATACAAATGCATACACGCT 57.182 34.783 0.00 0.00 0.00 5.07
743 746 6.482835 TGTAAAGATACAAATGCATACACGC 58.517 36.000 0.00 0.00 39.06 5.34
880 909 1.617018 CGACCAAGGCCTCTCCATGA 61.617 60.000 5.23 0.00 35.62 3.07
892 921 2.556287 GTTGAAGCCGCGACCAAG 59.444 61.111 8.23 0.00 0.00 3.61
930 962 2.975799 GTTTGGTCGAAGCCGCCA 60.976 61.111 0.00 0.00 39.14 5.69
990 1025 1.526686 GCCATCCATGTCGCATCCA 60.527 57.895 0.00 0.00 0.00 3.41
1103 1138 5.416013 CCCCTAAAATTCCAAAGTGACTCTC 59.584 44.000 0.00 0.00 0.00 3.20
1104 1139 5.325239 CCCCTAAAATTCCAAAGTGACTCT 58.675 41.667 0.00 0.00 0.00 3.24
1105 1140 4.462834 CCCCCTAAAATTCCAAAGTGACTC 59.537 45.833 0.00 0.00 0.00 3.36
1106 1141 4.416516 CCCCCTAAAATTCCAAAGTGACT 58.583 43.478 0.00 0.00 0.00 3.41
1107 1142 3.056107 GCCCCCTAAAATTCCAAAGTGAC 60.056 47.826 0.00 0.00 0.00 3.67
1182 1217 2.161609 CCCTAACAACTGGCGTCAATTC 59.838 50.000 0.00 0.00 0.00 2.17
1274 1310 7.016361 ACTGTCAGTGAAACAAATAACAGTC 57.984 36.000 4.21 0.00 41.50 3.51
1275 1311 7.391148 AACTGTCAGTGAAACAAATAACAGT 57.609 32.000 6.18 0.00 45.74 3.55
1276 1312 8.586273 CAAAACTGTCAGTGAAACAAATAACAG 58.414 33.333 6.18 0.00 41.43 3.16
1277 1313 8.300286 TCAAAACTGTCAGTGAAACAAATAACA 58.700 29.630 6.18 0.00 41.43 2.41
1278 1314 8.583765 GTCAAAACTGTCAGTGAAACAAATAAC 58.416 33.333 6.18 0.00 41.43 1.89
1297 1349 5.248870 ACAGAAACACATCCAGTCAAAAC 57.751 39.130 0.00 0.00 0.00 2.43
1326 1381 5.011943 ACAGGAGTTTAACCCGTGTACATTA 59.988 40.000 3.26 0.00 0.00 1.90
1335 1390 0.399075 ACCCACAGGAGTTTAACCCG 59.601 55.000 0.00 0.00 36.73 5.28
1614 1670 5.428253 ACAGTCACACATACTTGTTTGAGT 58.572 37.500 0.00 0.00 43.63 3.41
1615 1671 5.991328 ACAGTCACACATACTTGTTTGAG 57.009 39.130 0.00 0.00 41.82 3.02
1616 1672 7.213678 TCATACAGTCACACATACTTGTTTGA 58.786 34.615 0.00 0.00 39.59 2.69
1617 1673 7.420184 TCATACAGTCACACATACTTGTTTG 57.580 36.000 0.00 0.00 35.32 2.93
1618 1674 7.877612 TCATCATACAGTCACACATACTTGTTT 59.122 33.333 0.00 0.00 32.34 2.83
1619 1675 7.386059 TCATCATACAGTCACACATACTTGTT 58.614 34.615 0.00 0.00 32.34 2.83
1620 1676 6.935167 TCATCATACAGTCACACATACTTGT 58.065 36.000 0.00 0.00 36.15 3.16
1722 1800 2.620251 TGTCTGAAGTTCTGTGTGGG 57.380 50.000 4.17 0.00 0.00 4.61
1733 1812 6.636044 GCATTTGAGAGTTTCTTTGTCTGAAG 59.364 38.462 0.00 0.00 0.00 3.02
1819 1898 7.819900 ACTCTGTATTTCTGTGTTAATCCAGTC 59.180 37.037 4.78 0.00 0.00 3.51
1821 1900 9.088512 GTACTCTGTATTTCTGTGTTAATCCAG 57.911 37.037 0.00 0.00 0.00 3.86
1822 1901 8.590204 TGTACTCTGTATTTCTGTGTTAATCCA 58.410 33.333 0.00 0.00 0.00 3.41
1823 1902 8.997621 TGTACTCTGTATTTCTGTGTTAATCC 57.002 34.615 0.00 0.00 0.00 3.01
1824 1903 8.596380 GCTGTACTCTGTATTTCTGTGTTAATC 58.404 37.037 0.00 0.00 0.00 1.75
1825 1904 8.094548 TGCTGTACTCTGTATTTCTGTGTTAAT 58.905 33.333 0.00 0.00 0.00 1.40
1826 1905 7.438564 TGCTGTACTCTGTATTTCTGTGTTAA 58.561 34.615 0.00 0.00 0.00 2.01
1827 1906 6.988522 TGCTGTACTCTGTATTTCTGTGTTA 58.011 36.000 0.00 0.00 0.00 2.41
1828 1907 5.853936 TGCTGTACTCTGTATTTCTGTGTT 58.146 37.500 0.00 0.00 0.00 3.32
1829 1908 5.011125 ACTGCTGTACTCTGTATTTCTGTGT 59.989 40.000 0.00 0.00 0.00 3.72
1830 1909 5.347093 CACTGCTGTACTCTGTATTTCTGTG 59.653 44.000 0.00 0.00 0.00 3.66
1831 1910 5.243954 TCACTGCTGTACTCTGTATTTCTGT 59.756 40.000 0.00 0.00 0.00 3.41
1832 1911 5.714047 TCACTGCTGTACTCTGTATTTCTG 58.286 41.667 0.00 0.00 0.00 3.02
1833 1912 5.984695 TCACTGCTGTACTCTGTATTTCT 57.015 39.130 0.00 0.00 0.00 2.52
1834 1913 8.596380 GTTAATCACTGCTGTACTCTGTATTTC 58.404 37.037 0.00 0.00 0.00 2.17
1835 1914 8.094548 TGTTAATCACTGCTGTACTCTGTATTT 58.905 33.333 0.00 0.00 0.00 1.40
1836 1915 7.545965 GTGTTAATCACTGCTGTACTCTGTATT 59.454 37.037 0.00 1.89 43.13 1.89
1837 1916 7.036220 GTGTTAATCACTGCTGTACTCTGTAT 58.964 38.462 0.00 0.00 43.13 2.29
1873 1952 9.482627 TTTGTGTTAATCAACTCAACTTTGTTT 57.517 25.926 0.00 0.00 43.88 2.83
1885 1964 6.371809 TCAGGTCAGTTTGTGTTAATCAAC 57.628 37.500 0.00 0.00 35.06 3.18
1905 1984 6.568869 AGTGTACTAAGCTTCTAATGCTCAG 58.431 40.000 0.00 0.00 40.22 3.35
1919 1998 9.740239 TTTGTGTTGTAGTAAGAGTGTACTAAG 57.260 33.333 0.00 0.00 38.10 2.18
1925 2004 9.609346 AGTTAATTTGTGTTGTAGTAAGAGTGT 57.391 29.630 0.00 0.00 0.00 3.55
1928 2007 9.878599 CCAAGTTAATTTGTGTTGTAGTAAGAG 57.121 33.333 9.54 0.00 0.00 2.85
1929 2008 8.842280 CCCAAGTTAATTTGTGTTGTAGTAAGA 58.158 33.333 9.54 0.00 0.00 2.10
1930 2009 7.593644 GCCCAAGTTAATTTGTGTTGTAGTAAG 59.406 37.037 9.54 0.00 0.00 2.34
1931 2010 7.068348 TGCCCAAGTTAATTTGTGTTGTAGTAA 59.932 33.333 9.54 0.00 0.00 2.24
1932 2011 6.546403 TGCCCAAGTTAATTTGTGTTGTAGTA 59.454 34.615 9.54 0.00 0.00 1.82
1933 2012 5.361285 TGCCCAAGTTAATTTGTGTTGTAGT 59.639 36.000 9.54 0.00 0.00 2.73
1934 2013 5.837437 TGCCCAAGTTAATTTGTGTTGTAG 58.163 37.500 9.54 0.00 0.00 2.74
1935 2014 5.854010 TGCCCAAGTTAATTTGTGTTGTA 57.146 34.783 9.54 0.00 0.00 2.41
1946 2025 9.262358 GTTAATTTGTGTTAATGCCCAAGTTAA 57.738 29.630 0.00 0.00 31.10 2.01
1968 2047 5.007682 GTGCTCCAGTTTATCCCAAGTTAA 58.992 41.667 0.00 0.00 0.00 2.01
2140 2219 4.379243 CGCGAGGAAGGCACCAGT 62.379 66.667 0.00 0.00 0.00 4.00
2264 2343 0.039074 CGACGAGTGCCAAGAAGTCT 60.039 55.000 0.00 0.00 0.00 3.24
2269 2348 2.254350 CGTCGACGAGTGCCAAGA 59.746 61.111 33.35 0.00 43.02 3.02
2276 2355 1.895707 AGGTTCACCGTCGACGAGT 60.896 57.895 37.65 28.50 43.02 4.18
2284 2363 2.029073 CACTCGCAGGTTCACCGT 59.971 61.111 0.00 0.00 42.08 4.83
2322 2401 2.083774 GTCGTTGCCATCTCCAATGAA 58.916 47.619 0.00 0.00 39.23 2.57
2411 2490 1.117994 TGATCAGCAGACTGCCCTAG 58.882 55.000 23.74 11.56 46.52 3.02
2412 2491 1.571955 TTGATCAGCAGACTGCCCTA 58.428 50.000 23.74 9.97 46.52 3.53
2517 2605 3.461773 CCCGAGTCCGAGCCATGT 61.462 66.667 0.00 0.00 38.22 3.21
2528 2616 0.757188 CTCTCCTACCATGCCCGAGT 60.757 60.000 0.00 0.00 0.00 4.18
2589 2746 0.249120 GGACATGGGATCACGTCACA 59.751 55.000 5.51 0.00 46.20 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.