Multiple sequence alignment - TraesCS1B01G323400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G323400 chr1B 100.000 2354 0 0 1 2354 548516579 548514226 0.000000e+00 4348.0
1 TraesCS1B01G323400 chr1B 88.347 369 37 3 1 364 47628298 47627931 2.780000e-119 438.0
2 TraesCS1B01G323400 chr5B 96.089 895 14 4 1480 2354 381085610 381086503 0.000000e+00 1439.0
3 TraesCS1B01G323400 chr5B 79.860 715 84 36 1468 2140 655621174 655621870 3.540000e-128 468.0
4 TraesCS1B01G323400 chr1D 92.262 1008 46 13 490 1480 407863723 407862731 0.000000e+00 1400.0
5 TraesCS1B01G323400 chr1D 93.056 72 4 1 422 493 407865161 407865091 1.150000e-18 104.0
6 TraesCS1B01G323400 chr1D 92.683 41 1 2 383 421 407865135 407865175 9.090000e-05 58.4
7 TraesCS1B01G323400 chr1A 90.084 1069 62 18 422 1461 503333008 503331955 0.000000e+00 1347.0
8 TraesCS1B01G323400 chr1A 100.000 31 0 0 391 421 503332992 503333022 9.090000e-05 58.4
9 TraesCS1B01G323400 chr5D 88.298 846 70 17 1520 2354 529783301 529784128 0.000000e+00 987.0
10 TraesCS1B01G323400 chr5D 84.170 259 24 13 1897 2142 305819722 305819468 3.910000e-58 235.0
11 TraesCS1B01G323400 chr7B 78.791 910 99 46 1478 2306 35141144 35142040 2.070000e-145 525.0
12 TraesCS1B01G323400 chr7B 78.409 880 111 44 1480 2295 223590231 223591095 1.260000e-137 499.0
13 TraesCS1B01G323400 chr6D 86.325 468 45 6 1483 1943 406652189 406651734 2.100000e-135 492.0
14 TraesCS1B01G323400 chr6D 88.859 368 33 5 1 362 68328964 68329329 1.660000e-121 446.0
15 TraesCS1B01G323400 chr2B 77.293 894 121 45 1481 2306 243782819 243781940 3.570000e-123 451.0
16 TraesCS1B01G323400 chr2B 83.436 489 44 22 1892 2354 677875512 677875035 1.010000e-113 420.0
17 TraesCS1B01G323400 chr2B 83.268 257 37 4 1483 1736 677875771 677875518 5.060000e-57 231.0
18 TraesCS1B01G323400 chr2D 88.950 362 33 4 7 363 596576032 596575673 7.720000e-120 440.0
19 TraesCS1B01G323400 chrUn 88.347 369 37 3 1 364 434814160 434813793 2.780000e-119 438.0
20 TraesCS1B01G323400 chrUn 88.378 370 32 8 1 364 46070006 46069642 3.590000e-118 435.0
21 TraesCS1B01G323400 chrUn 83.092 207 29 3 1480 1681 153377867 153377662 1.440000e-42 183.0
22 TraesCS1B01G323400 chr7A 88.347 369 37 3 1 364 670686386 670686019 2.780000e-119 438.0
23 TraesCS1B01G323400 chr7A 87.805 369 38 4 1 364 6799473 6799107 2.160000e-115 425.0
24 TraesCS1B01G323400 chr7D 88.315 368 36 5 1 362 127762233 127761867 3.590000e-118 435.0
25 TraesCS1B01G323400 chr3D 88.043 368 38 3 2 364 574197682 574197316 4.650000e-117 431.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G323400 chr1B 548514226 548516579 2353 True 4348.0 4348 100.000 1 2354 1 chr1B.!!$R2 2353
1 TraesCS1B01G323400 chr5B 381085610 381086503 893 False 1439.0 1439 96.089 1480 2354 1 chr5B.!!$F1 874
2 TraesCS1B01G323400 chr5B 655621174 655621870 696 False 468.0 468 79.860 1468 2140 1 chr5B.!!$F2 672
3 TraesCS1B01G323400 chr1D 407862731 407865161 2430 True 752.0 1400 92.659 422 1480 2 chr1D.!!$R1 1058
4 TraesCS1B01G323400 chr1A 503331955 503333008 1053 True 1347.0 1347 90.084 422 1461 1 chr1A.!!$R1 1039
5 TraesCS1B01G323400 chr5D 529783301 529784128 827 False 987.0 987 88.298 1520 2354 1 chr5D.!!$F1 834
6 TraesCS1B01G323400 chr7B 35141144 35142040 896 False 525.0 525 78.791 1478 2306 1 chr7B.!!$F1 828
7 TraesCS1B01G323400 chr7B 223590231 223591095 864 False 499.0 499 78.409 1480 2295 1 chr7B.!!$F2 815
8 TraesCS1B01G323400 chr2B 243781940 243782819 879 True 451.0 451 77.293 1481 2306 1 chr2B.!!$R1 825
9 TraesCS1B01G323400 chr2B 677875035 677875771 736 True 325.5 420 83.352 1483 2354 2 chr2B.!!$R2 871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.034059 CACCAGAGACACACCTCCAC 59.966 60.0 0.0 0.0 33.76 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 2940 0.528466 TTGATCGGACGCTGCTGATC 60.528 55.0 14.27 14.27 46.27 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.864686 CAACCGCCGCCGATGAAG 61.865 66.667 0.00 0.00 36.29 3.02
20 21 4.077184 AACCGCCGCCGATGAAGA 62.077 61.111 0.00 0.00 36.29 2.87
21 22 4.514577 ACCGCCGCCGATGAAGAG 62.515 66.667 0.00 0.00 36.29 2.85
22 23 4.207281 CCGCCGCCGATGAAGAGA 62.207 66.667 0.00 0.00 36.29 3.10
23 24 2.202743 CGCCGCCGATGAAGAGAA 60.203 61.111 0.00 0.00 36.29 2.87
24 25 2.233654 CGCCGCCGATGAAGAGAAG 61.234 63.158 0.00 0.00 36.29 2.85
25 26 1.153549 GCCGCCGATGAAGAGAAGT 60.154 57.895 0.00 0.00 0.00 3.01
26 27 0.741221 GCCGCCGATGAAGAGAAGTT 60.741 55.000 0.00 0.00 0.00 2.66
27 28 1.726853 CCGCCGATGAAGAGAAGTTT 58.273 50.000 0.00 0.00 0.00 2.66
28 29 2.888594 CCGCCGATGAAGAGAAGTTTA 58.111 47.619 0.00 0.00 0.00 2.01
29 30 2.860735 CCGCCGATGAAGAGAAGTTTAG 59.139 50.000 0.00 0.00 0.00 1.85
30 31 3.428999 CCGCCGATGAAGAGAAGTTTAGA 60.429 47.826 0.00 0.00 0.00 2.10
31 32 4.363999 CGCCGATGAAGAGAAGTTTAGAT 58.636 43.478 0.00 0.00 0.00 1.98
32 33 4.442733 CGCCGATGAAGAGAAGTTTAGATC 59.557 45.833 0.00 0.00 0.00 2.75
33 34 4.442733 GCCGATGAAGAGAAGTTTAGATCG 59.557 45.833 0.00 0.00 33.06 3.69
34 35 4.979197 CCGATGAAGAGAAGTTTAGATCGG 59.021 45.833 0.00 0.00 43.53 4.18
35 36 5.822278 CGATGAAGAGAAGTTTAGATCGGA 58.178 41.667 0.00 0.00 0.00 4.55
36 37 6.266323 CGATGAAGAGAAGTTTAGATCGGAA 58.734 40.000 0.00 0.00 0.00 4.30
37 38 6.416455 CGATGAAGAGAAGTTTAGATCGGAAG 59.584 42.308 0.00 0.00 0.00 3.46
38 39 5.967088 TGAAGAGAAGTTTAGATCGGAAGG 58.033 41.667 0.00 0.00 0.00 3.46
39 40 5.715279 TGAAGAGAAGTTTAGATCGGAAGGA 59.285 40.000 0.00 0.00 0.00 3.36
40 41 6.210784 TGAAGAGAAGTTTAGATCGGAAGGAA 59.789 38.462 0.00 0.00 0.00 3.36
41 42 5.968254 AGAGAAGTTTAGATCGGAAGGAAC 58.032 41.667 0.00 0.00 0.00 3.62
42 43 5.087391 AGAAGTTTAGATCGGAAGGAACC 57.913 43.478 0.00 0.00 0.00 3.62
43 44 4.778427 AGAAGTTTAGATCGGAAGGAACCT 59.222 41.667 0.00 0.00 0.00 3.50
44 45 4.473477 AGTTTAGATCGGAAGGAACCTG 57.527 45.455 0.00 0.00 0.00 4.00
45 46 4.094476 AGTTTAGATCGGAAGGAACCTGA 58.906 43.478 0.00 0.00 0.00 3.86
46 47 4.530946 AGTTTAGATCGGAAGGAACCTGAA 59.469 41.667 0.00 0.00 0.00 3.02
47 48 4.467198 TTAGATCGGAAGGAACCTGAAC 57.533 45.455 0.00 0.00 0.00 3.18
48 49 2.257207 AGATCGGAAGGAACCTGAACA 58.743 47.619 0.00 0.00 0.00 3.18
49 50 2.028020 AGATCGGAAGGAACCTGAACAC 60.028 50.000 0.00 0.00 0.00 3.32
50 51 1.124780 TCGGAAGGAACCTGAACACA 58.875 50.000 0.00 0.00 0.00 3.72
51 52 1.202604 TCGGAAGGAACCTGAACACAC 60.203 52.381 0.00 0.00 0.00 3.82
52 53 1.474320 CGGAAGGAACCTGAACACACA 60.474 52.381 0.00 0.00 0.00 3.72
53 54 2.810400 CGGAAGGAACCTGAACACACAT 60.810 50.000 0.00 0.00 0.00 3.21
54 55 2.554032 GGAAGGAACCTGAACACACATG 59.446 50.000 0.00 0.00 0.00 3.21
55 56 3.476552 GAAGGAACCTGAACACACATGA 58.523 45.455 0.00 0.00 0.00 3.07
56 57 3.576078 AGGAACCTGAACACACATGAA 57.424 42.857 0.00 0.00 0.00 2.57
57 58 4.104383 AGGAACCTGAACACACATGAAT 57.896 40.909 0.00 0.00 0.00 2.57
58 59 5.241403 AGGAACCTGAACACACATGAATA 57.759 39.130 0.00 0.00 0.00 1.75
59 60 5.630121 AGGAACCTGAACACACATGAATAA 58.370 37.500 0.00 0.00 0.00 1.40
60 61 6.068010 AGGAACCTGAACACACATGAATAAA 58.932 36.000 0.00 0.00 0.00 1.40
61 62 6.207417 AGGAACCTGAACACACATGAATAAAG 59.793 38.462 0.00 0.00 0.00 1.85
62 63 6.206634 GGAACCTGAACACACATGAATAAAGA 59.793 38.462 0.00 0.00 0.00 2.52
63 64 6.560253 ACCTGAACACACATGAATAAAGAC 57.440 37.500 0.00 0.00 0.00 3.01
64 65 6.061441 ACCTGAACACACATGAATAAAGACA 58.939 36.000 0.00 0.00 0.00 3.41
65 66 6.545666 ACCTGAACACACATGAATAAAGACAA 59.454 34.615 0.00 0.00 0.00 3.18
66 67 7.068103 ACCTGAACACACATGAATAAAGACAAA 59.932 33.333 0.00 0.00 0.00 2.83
67 68 7.379529 CCTGAACACACATGAATAAAGACAAAC 59.620 37.037 0.00 0.00 0.00 2.93
68 69 7.766283 TGAACACACATGAATAAAGACAAACA 58.234 30.769 0.00 0.00 0.00 2.83
69 70 8.246871 TGAACACACATGAATAAAGACAAACAA 58.753 29.630 0.00 0.00 0.00 2.83
70 71 8.994429 AACACACATGAATAAAGACAAACAAA 57.006 26.923 0.00 0.00 0.00 2.83
71 72 8.633075 ACACACATGAATAAAGACAAACAAAG 57.367 30.769 0.00 0.00 0.00 2.77
72 73 8.465999 ACACACATGAATAAAGACAAACAAAGA 58.534 29.630 0.00 0.00 0.00 2.52
73 74 8.745837 CACACATGAATAAAGACAAACAAAGAC 58.254 33.333 0.00 0.00 0.00 3.01
74 75 7.920682 ACACATGAATAAAGACAAACAAAGACC 59.079 33.333 0.00 0.00 0.00 3.85
75 76 7.113404 CACATGAATAAAGACAAACAAAGACCG 59.887 37.037 0.00 0.00 0.00 4.79
76 77 6.067263 TGAATAAAGACAAACAAAGACCGG 57.933 37.500 0.00 0.00 0.00 5.28
77 78 5.823570 TGAATAAAGACAAACAAAGACCGGA 59.176 36.000 9.46 0.00 0.00 5.14
78 79 6.488683 TGAATAAAGACAAACAAAGACCGGAT 59.511 34.615 9.46 0.00 0.00 4.18
79 80 4.830826 AAAGACAAACAAAGACCGGATC 57.169 40.909 9.46 1.42 0.00 3.36
80 81 2.779506 AGACAAACAAAGACCGGATCC 58.220 47.619 9.46 0.00 0.00 3.36
81 82 1.463444 GACAAACAAAGACCGGATCCG 59.537 52.381 27.65 27.65 39.44 4.18
82 83 1.071071 ACAAACAAAGACCGGATCCGA 59.929 47.619 35.42 0.00 42.83 4.55
83 84 1.732259 CAAACAAAGACCGGATCCGAG 59.268 52.381 35.42 25.48 42.83 4.63
84 85 0.391263 AACAAAGACCGGATCCGAGC 60.391 55.000 35.42 24.41 42.83 5.03
85 86 1.258445 ACAAAGACCGGATCCGAGCT 61.258 55.000 35.42 26.17 42.83 4.09
86 87 0.807667 CAAAGACCGGATCCGAGCTG 60.808 60.000 35.42 20.34 42.83 4.24
87 88 0.970937 AAAGACCGGATCCGAGCTGA 60.971 55.000 35.42 0.00 42.83 4.26
88 89 0.757188 AAGACCGGATCCGAGCTGAT 60.757 55.000 35.42 14.08 42.83 2.90
89 90 1.175983 AGACCGGATCCGAGCTGATC 61.176 60.000 35.42 19.86 42.83 2.92
94 95 2.127839 GATCCGAGCTGATCCACCA 58.872 57.895 0.00 0.00 36.04 4.17
95 96 0.465705 GATCCGAGCTGATCCACCAA 59.534 55.000 0.00 0.00 36.04 3.67
96 97 1.071385 GATCCGAGCTGATCCACCAAT 59.929 52.381 0.00 0.00 36.04 3.16
97 98 0.178767 TCCGAGCTGATCCACCAATG 59.821 55.000 0.00 0.00 0.00 2.82
98 99 0.178767 CCGAGCTGATCCACCAATGA 59.821 55.000 0.00 0.00 0.00 2.57
99 100 1.293924 CGAGCTGATCCACCAATGAC 58.706 55.000 0.00 0.00 0.00 3.06
100 101 1.405933 CGAGCTGATCCACCAATGACA 60.406 52.381 0.00 0.00 0.00 3.58
101 102 2.286872 GAGCTGATCCACCAATGACAG 58.713 52.381 0.00 0.00 0.00 3.51
102 103 0.737219 GCTGATCCACCAATGACAGC 59.263 55.000 0.00 0.00 38.76 4.40
103 104 1.386533 CTGATCCACCAATGACAGCC 58.613 55.000 0.00 0.00 0.00 4.85
104 105 0.697658 TGATCCACCAATGACAGCCA 59.302 50.000 0.00 0.00 0.00 4.75
105 106 1.285667 TGATCCACCAATGACAGCCAT 59.714 47.619 0.00 0.00 36.99 4.40
106 107 1.952296 GATCCACCAATGACAGCCATC 59.048 52.381 0.00 0.00 33.53 3.51
107 108 0.392863 TCCACCAATGACAGCCATCG 60.393 55.000 0.00 0.00 33.53 3.84
108 109 0.392863 CCACCAATGACAGCCATCGA 60.393 55.000 0.00 0.00 33.53 3.59
109 110 0.729116 CACCAATGACAGCCATCGAC 59.271 55.000 0.00 0.00 33.53 4.20
110 111 0.392998 ACCAATGACAGCCATCGACC 60.393 55.000 0.00 0.00 33.53 4.79
111 112 0.392863 CCAATGACAGCCATCGACCA 60.393 55.000 0.00 0.00 33.53 4.02
112 113 1.452110 CAATGACAGCCATCGACCAA 58.548 50.000 0.00 0.00 33.53 3.67
113 114 1.811965 CAATGACAGCCATCGACCAAA 59.188 47.619 0.00 0.00 33.53 3.28
114 115 2.424601 CAATGACAGCCATCGACCAAAT 59.575 45.455 0.00 0.00 33.53 2.32
115 116 1.737838 TGACAGCCATCGACCAAATC 58.262 50.000 0.00 0.00 0.00 2.17
116 117 1.017387 GACAGCCATCGACCAAATCC 58.983 55.000 0.00 0.00 0.00 3.01
117 118 0.394352 ACAGCCATCGACCAAATCCC 60.394 55.000 0.00 0.00 0.00 3.85
118 119 1.153168 AGCCATCGACCAAATCCCG 60.153 57.895 0.00 0.00 0.00 5.14
119 120 2.834618 GCCATCGACCAAATCCCGC 61.835 63.158 0.00 0.00 0.00 6.13
120 121 2.534019 CCATCGACCAAATCCCGCG 61.534 63.158 0.00 0.00 0.00 6.46
121 122 1.520564 CATCGACCAAATCCCGCGA 60.521 57.895 8.23 0.00 35.32 5.87
122 123 1.227263 ATCGACCAAATCCCGCGAG 60.227 57.895 8.23 0.00 34.25 5.03
123 124 1.672854 ATCGACCAAATCCCGCGAGA 61.673 55.000 8.23 0.00 34.25 4.04
124 125 1.227263 CGACCAAATCCCGCGAGAT 60.227 57.895 8.23 0.65 0.00 2.75
125 126 1.215655 CGACCAAATCCCGCGAGATC 61.216 60.000 8.23 0.00 0.00 2.75
126 127 0.880718 GACCAAATCCCGCGAGATCC 60.881 60.000 8.23 0.00 0.00 3.36
127 128 1.146041 CCAAATCCCGCGAGATCCA 59.854 57.895 8.23 0.00 0.00 3.41
128 129 1.160329 CCAAATCCCGCGAGATCCAC 61.160 60.000 8.23 0.00 0.00 4.02
129 130 1.146263 AAATCCCGCGAGATCCACC 59.854 57.895 8.23 0.00 0.00 4.61
130 131 1.622607 AAATCCCGCGAGATCCACCA 61.623 55.000 8.23 0.00 0.00 4.17
131 132 2.032860 AATCCCGCGAGATCCACCAG 62.033 60.000 8.23 0.00 0.00 4.00
132 133 2.928988 ATCCCGCGAGATCCACCAGA 62.929 60.000 8.23 0.00 0.00 3.86
133 134 2.415010 CCGCGAGATCCACCAGAG 59.585 66.667 8.23 0.00 0.00 3.35
134 135 2.121538 CCGCGAGATCCACCAGAGA 61.122 63.158 8.23 0.00 0.00 3.10
135 136 1.064946 CGCGAGATCCACCAGAGAC 59.935 63.158 0.00 0.00 0.00 3.36
136 137 1.657751 CGCGAGATCCACCAGAGACA 61.658 60.000 0.00 0.00 0.00 3.41
137 138 0.179124 GCGAGATCCACCAGAGACAC 60.179 60.000 0.00 0.00 0.00 3.67
138 139 1.177401 CGAGATCCACCAGAGACACA 58.823 55.000 0.00 0.00 0.00 3.72
139 140 1.135257 CGAGATCCACCAGAGACACAC 60.135 57.143 0.00 0.00 0.00 3.82
140 141 1.205893 GAGATCCACCAGAGACACACC 59.794 57.143 0.00 0.00 0.00 4.16
141 142 1.203237 AGATCCACCAGAGACACACCT 60.203 52.381 0.00 0.00 0.00 4.00
142 143 1.205893 GATCCACCAGAGACACACCTC 59.794 57.143 0.00 0.00 0.00 3.85
143 144 0.832135 TCCACCAGAGACACACCTCC 60.832 60.000 0.00 0.00 33.76 4.30
144 145 1.121407 CCACCAGAGACACACCTCCA 61.121 60.000 0.00 0.00 33.76 3.86
145 146 0.034059 CACCAGAGACACACCTCCAC 59.966 60.000 0.00 0.00 33.76 4.02
146 147 0.398522 ACCAGAGACACACCTCCACA 60.399 55.000 0.00 0.00 33.76 4.17
147 148 0.034059 CCAGAGACACACCTCCACAC 59.966 60.000 0.00 0.00 33.76 3.82
148 149 0.752658 CAGAGACACACCTCCACACA 59.247 55.000 0.00 0.00 33.76 3.72
149 150 0.753262 AGAGACACACCTCCACACAC 59.247 55.000 0.00 0.00 33.76 3.82
150 151 0.249911 GAGACACACCTCCACACACC 60.250 60.000 0.00 0.00 0.00 4.16
151 152 1.227853 GACACACCTCCACACACCC 60.228 63.158 0.00 0.00 0.00 4.61
152 153 2.113139 CACACCTCCACACACCCC 59.887 66.667 0.00 0.00 0.00 4.95
153 154 2.039831 ACACCTCCACACACCCCT 60.040 61.111 0.00 0.00 0.00 4.79
154 155 1.696314 ACACCTCCACACACCCCTT 60.696 57.895 0.00 0.00 0.00 3.95
155 156 1.286305 ACACCTCCACACACCCCTTT 61.286 55.000 0.00 0.00 0.00 3.11
156 157 0.823356 CACCTCCACACACCCCTTTG 60.823 60.000 0.00 0.00 0.00 2.77
157 158 0.991355 ACCTCCACACACCCCTTTGA 60.991 55.000 0.00 0.00 0.00 2.69
158 159 0.537371 CCTCCACACACCCCTTTGAC 60.537 60.000 0.00 0.00 0.00 3.18
159 160 0.884704 CTCCACACACCCCTTTGACG 60.885 60.000 0.00 0.00 0.00 4.35
160 161 1.147376 CCACACACCCCTTTGACGA 59.853 57.895 0.00 0.00 0.00 4.20
161 162 0.250727 CCACACACCCCTTTGACGAT 60.251 55.000 0.00 0.00 0.00 3.73
162 163 1.156736 CACACACCCCTTTGACGATC 58.843 55.000 0.00 0.00 0.00 3.69
163 164 0.036306 ACACACCCCTTTGACGATCC 59.964 55.000 0.00 0.00 0.00 3.36
164 165 0.324943 CACACCCCTTTGACGATCCT 59.675 55.000 0.00 0.00 0.00 3.24
165 166 1.553248 CACACCCCTTTGACGATCCTA 59.447 52.381 0.00 0.00 0.00 2.94
166 167 1.831736 ACACCCCTTTGACGATCCTAG 59.168 52.381 0.00 0.00 0.00 3.02
167 168 2.108168 CACCCCTTTGACGATCCTAGA 58.892 52.381 0.00 0.00 0.00 2.43
168 169 2.108970 ACCCCTTTGACGATCCTAGAC 58.891 52.381 0.00 0.00 0.00 2.59
169 170 2.108168 CCCCTTTGACGATCCTAGACA 58.892 52.381 0.00 0.00 0.00 3.41
170 171 2.159085 CCCCTTTGACGATCCTAGACAC 60.159 54.545 0.00 0.00 0.00 3.67
171 172 2.496070 CCCTTTGACGATCCTAGACACA 59.504 50.000 0.00 0.00 0.00 3.72
172 173 3.133003 CCCTTTGACGATCCTAGACACAT 59.867 47.826 0.00 0.00 0.00 3.21
173 174 4.363999 CCTTTGACGATCCTAGACACATC 58.636 47.826 0.00 0.00 0.00 3.06
174 175 4.142160 CCTTTGACGATCCTAGACACATCA 60.142 45.833 0.00 0.00 0.00 3.07
175 176 5.452496 CCTTTGACGATCCTAGACACATCAT 60.452 44.000 0.00 0.00 0.00 2.45
176 177 5.598416 TTGACGATCCTAGACACATCATT 57.402 39.130 0.00 0.00 0.00 2.57
177 178 4.936891 TGACGATCCTAGACACATCATTG 58.063 43.478 0.00 0.00 0.00 2.82
178 179 4.202151 TGACGATCCTAGACACATCATTGG 60.202 45.833 0.00 0.00 0.00 3.16
179 180 3.960755 ACGATCCTAGACACATCATTGGA 59.039 43.478 0.00 0.00 0.00 3.53
180 181 4.202161 ACGATCCTAGACACATCATTGGAC 60.202 45.833 0.00 0.00 0.00 4.02
181 182 3.801114 TCCTAGACACATCATTGGACG 57.199 47.619 0.00 0.00 0.00 4.79
182 183 2.430694 TCCTAGACACATCATTGGACGG 59.569 50.000 0.00 0.00 0.00 4.79
183 184 2.483714 CCTAGACACATCATTGGACGGG 60.484 54.545 0.00 0.00 0.00 5.28
184 185 0.253044 AGACACATCATTGGACGGGG 59.747 55.000 0.00 0.00 0.00 5.73
185 186 0.748005 GACACATCATTGGACGGGGG 60.748 60.000 0.00 0.00 0.00 5.40
186 187 2.120909 CACATCATTGGACGGGGGC 61.121 63.158 0.00 0.00 0.00 5.80
187 188 2.308722 ACATCATTGGACGGGGGCT 61.309 57.895 0.00 0.00 0.00 5.19
188 189 0.986019 ACATCATTGGACGGGGGCTA 60.986 55.000 0.00 0.00 0.00 3.93
189 190 0.250467 CATCATTGGACGGGGGCTAG 60.250 60.000 0.00 0.00 0.00 3.42
190 191 0.399949 ATCATTGGACGGGGGCTAGA 60.400 55.000 0.00 0.00 0.00 2.43
191 192 1.146263 CATTGGACGGGGGCTAGAC 59.854 63.158 0.00 0.00 0.00 2.59
192 193 2.432300 ATTGGACGGGGGCTAGACG 61.432 63.158 0.00 0.00 0.00 4.18
195 196 4.828296 GACGGGGGCTAGACGGGA 62.828 72.222 0.00 0.00 0.00 5.14
196 197 4.387343 ACGGGGGCTAGACGGGAA 62.387 66.667 0.00 0.00 0.00 3.97
197 198 3.537874 CGGGGGCTAGACGGGAAG 61.538 72.222 0.00 0.00 0.00 3.46
198 199 2.042230 GGGGGCTAGACGGGAAGA 60.042 66.667 0.00 0.00 0.00 2.87
199 200 1.688187 GGGGGCTAGACGGGAAGAA 60.688 63.158 0.00 0.00 0.00 2.52
200 201 1.521141 GGGGCTAGACGGGAAGAAC 59.479 63.158 0.00 0.00 0.00 3.01
201 202 1.521141 GGGCTAGACGGGAAGAACC 59.479 63.158 0.00 0.00 38.08 3.62
202 203 0.976590 GGGCTAGACGGGAAGAACCT 60.977 60.000 0.00 0.00 38.98 3.50
203 204 0.903236 GGCTAGACGGGAAGAACCTT 59.097 55.000 0.00 0.00 38.98 3.50
204 205 2.105766 GGCTAGACGGGAAGAACCTTA 58.894 52.381 0.00 0.00 38.98 2.69
205 206 2.699321 GGCTAGACGGGAAGAACCTTAT 59.301 50.000 0.00 0.00 38.98 1.73
206 207 3.134262 GGCTAGACGGGAAGAACCTTATT 59.866 47.826 0.00 0.00 38.98 1.40
207 208 4.370049 GCTAGACGGGAAGAACCTTATTC 58.630 47.826 0.00 0.00 38.98 1.75
208 209 3.908643 AGACGGGAAGAACCTTATTCC 57.091 47.619 3.23 3.23 45.45 3.01
217 218 7.326968 GGAAGAACCTTATTCCATCTTCAAG 57.673 40.000 13.81 0.00 45.49 3.02
218 219 7.112779 GGAAGAACCTTATTCCATCTTCAAGA 58.887 38.462 13.81 0.00 45.49 3.02
219 220 7.611855 GGAAGAACCTTATTCCATCTTCAAGAA 59.388 37.037 13.81 0.00 45.49 2.52
220 221 8.572855 AAGAACCTTATTCCATCTTCAAGAAG 57.427 34.615 3.43 3.43 39.71 2.85
221 222 6.601217 AGAACCTTATTCCATCTTCAAGAAGC 59.399 38.462 4.95 0.00 38.28 3.86
222 223 5.196695 ACCTTATTCCATCTTCAAGAAGCC 58.803 41.667 4.95 0.00 38.28 4.35
223 224 4.582240 CCTTATTCCATCTTCAAGAAGCCC 59.418 45.833 4.95 0.00 38.28 5.19
224 225 2.514458 TTCCATCTTCAAGAAGCCCC 57.486 50.000 4.95 0.00 38.28 5.80
225 226 0.625849 TCCATCTTCAAGAAGCCCCC 59.374 55.000 4.95 0.00 38.28 5.40
226 227 0.749454 CCATCTTCAAGAAGCCCCCG 60.749 60.000 4.95 0.00 38.28 5.73
227 228 1.077429 ATCTTCAAGAAGCCCCCGC 60.077 57.895 4.95 0.00 38.28 6.13
228 229 2.558380 ATCTTCAAGAAGCCCCCGCC 62.558 60.000 4.95 0.00 38.28 6.13
229 230 4.715523 TTCAAGAAGCCCCCGCCG 62.716 66.667 0.00 0.00 34.57 6.46
241 242 4.436998 CCGCCGCCTCGTCTTCTT 62.437 66.667 0.00 0.00 0.00 2.52
242 243 3.181967 CGCCGCCTCGTCTTCTTG 61.182 66.667 0.00 0.00 0.00 3.02
243 244 2.261671 GCCGCCTCGTCTTCTTGA 59.738 61.111 0.00 0.00 0.00 3.02
244 245 1.807573 GCCGCCTCGTCTTCTTGAG 60.808 63.158 0.00 0.00 0.00 3.02
245 246 1.807573 CCGCCTCGTCTTCTTGAGC 60.808 63.158 0.00 0.00 0.00 4.26
246 247 1.080501 CGCCTCGTCTTCTTGAGCA 60.081 57.895 0.00 0.00 0.00 4.26
247 248 1.075425 CGCCTCGTCTTCTTGAGCAG 61.075 60.000 0.00 0.00 0.00 4.24
248 249 0.739112 GCCTCGTCTTCTTGAGCAGG 60.739 60.000 0.00 0.00 0.00 4.85
249 250 0.891373 CCTCGTCTTCTTGAGCAGGA 59.109 55.000 0.00 0.00 0.00 3.86
250 251 1.403514 CCTCGTCTTCTTGAGCAGGAC 60.404 57.143 0.00 0.00 0.00 3.85
251 252 1.270826 CTCGTCTTCTTGAGCAGGACA 59.729 52.381 0.00 0.00 0.00 4.02
252 253 1.000163 TCGTCTTCTTGAGCAGGACAC 60.000 52.381 0.00 0.00 0.00 3.67
253 254 1.269778 CGTCTTCTTGAGCAGGACACA 60.270 52.381 0.00 0.00 0.00 3.72
254 255 2.803133 CGTCTTCTTGAGCAGGACACAA 60.803 50.000 0.00 0.00 0.00 3.33
255 256 3.206150 GTCTTCTTGAGCAGGACACAAA 58.794 45.455 0.00 0.00 0.00 2.83
256 257 3.002759 GTCTTCTTGAGCAGGACACAAAC 59.997 47.826 0.00 0.00 0.00 2.93
257 258 1.967319 TCTTGAGCAGGACACAAACC 58.033 50.000 0.00 0.00 0.00 3.27
258 259 1.490490 TCTTGAGCAGGACACAAACCT 59.510 47.619 0.00 0.00 38.40 3.50
259 260 2.092429 TCTTGAGCAGGACACAAACCTT 60.092 45.455 0.00 0.00 35.35 3.50
260 261 3.135712 TCTTGAGCAGGACACAAACCTTA 59.864 43.478 0.00 0.00 35.35 2.69
261 262 3.569194 TGAGCAGGACACAAACCTTAA 57.431 42.857 0.00 0.00 35.35 1.85
262 263 3.211045 TGAGCAGGACACAAACCTTAAC 58.789 45.455 0.00 0.00 35.35 2.01
263 264 3.211045 GAGCAGGACACAAACCTTAACA 58.789 45.455 0.00 0.00 35.35 2.41
264 265 3.626930 AGCAGGACACAAACCTTAACAA 58.373 40.909 0.00 0.00 35.35 2.83
265 266 4.020543 AGCAGGACACAAACCTTAACAAA 58.979 39.130 0.00 0.00 35.35 2.83
266 267 4.464597 AGCAGGACACAAACCTTAACAAAA 59.535 37.500 0.00 0.00 35.35 2.44
267 268 4.565166 GCAGGACACAAACCTTAACAAAAC 59.435 41.667 0.00 0.00 35.35 2.43
268 269 5.623596 GCAGGACACAAACCTTAACAAAACT 60.624 40.000 0.00 0.00 35.35 2.66
269 270 6.394809 CAGGACACAAACCTTAACAAAACTT 58.605 36.000 0.00 0.00 35.35 2.66
270 271 6.310224 CAGGACACAAACCTTAACAAAACTTG 59.690 38.462 0.00 0.00 35.35 3.16
271 272 6.209788 AGGACACAAACCTTAACAAAACTTGA 59.790 34.615 0.00 0.00 33.55 3.02
272 273 6.869388 GGACACAAACCTTAACAAAACTTGAA 59.131 34.615 0.00 0.00 0.00 2.69
273 274 7.062956 GGACACAAACCTTAACAAAACTTGAAG 59.937 37.037 0.00 0.00 0.00 3.02
274 275 7.662897 ACACAAACCTTAACAAAACTTGAAGA 58.337 30.769 0.00 0.00 0.00 2.87
275 276 8.145122 ACACAAACCTTAACAAAACTTGAAGAA 58.855 29.630 0.00 0.00 0.00 2.52
276 277 8.647226 CACAAACCTTAACAAAACTTGAAGAAG 58.353 33.333 0.00 0.00 35.07 2.85
277 278 7.330946 ACAAACCTTAACAAAACTTGAAGAAGC 59.669 33.333 0.00 0.00 31.68 3.86
278 279 6.524101 ACCTTAACAAAACTTGAAGAAGCA 57.476 33.333 0.00 0.00 31.68 3.91
279 280 6.330278 ACCTTAACAAAACTTGAAGAAGCAC 58.670 36.000 0.00 0.00 31.68 4.40
280 281 5.748630 CCTTAACAAAACTTGAAGAAGCACC 59.251 40.000 0.00 0.00 31.68 5.01
281 282 6.405842 CCTTAACAAAACTTGAAGAAGCACCT 60.406 38.462 0.00 0.00 31.68 4.00
282 283 4.376340 ACAAAACTTGAAGAAGCACCTG 57.624 40.909 0.00 0.00 31.68 4.00
283 284 4.016444 ACAAAACTTGAAGAAGCACCTGA 58.984 39.130 0.00 0.00 31.68 3.86
284 285 4.462483 ACAAAACTTGAAGAAGCACCTGAA 59.538 37.500 0.00 0.00 31.68 3.02
285 286 5.047377 ACAAAACTTGAAGAAGCACCTGAAA 60.047 36.000 0.00 0.00 31.68 2.69
286 287 5.659440 AAACTTGAAGAAGCACCTGAAAA 57.341 34.783 0.00 0.00 31.68 2.29
287 288 4.639135 ACTTGAAGAAGCACCTGAAAAC 57.361 40.909 0.00 0.00 31.68 2.43
288 289 3.065371 ACTTGAAGAAGCACCTGAAAACG 59.935 43.478 0.00 0.00 31.68 3.60
289 290 2.912771 TGAAGAAGCACCTGAAAACGA 58.087 42.857 0.00 0.00 0.00 3.85
290 291 3.275143 TGAAGAAGCACCTGAAAACGAA 58.725 40.909 0.00 0.00 0.00 3.85
291 292 3.312421 TGAAGAAGCACCTGAAAACGAAG 59.688 43.478 0.00 0.00 0.00 3.79
293 294 2.872858 AGAAGCACCTGAAAACGAAGTC 59.127 45.455 0.00 0.00 45.00 3.01
294 295 2.325583 AGCACCTGAAAACGAAGTCA 57.674 45.000 0.00 0.00 45.00 3.41
295 296 2.851195 AGCACCTGAAAACGAAGTCAT 58.149 42.857 0.00 0.00 45.00 3.06
296 297 2.808543 AGCACCTGAAAACGAAGTCATC 59.191 45.455 0.00 0.00 45.00 2.92
297 298 2.095718 GCACCTGAAAACGAAGTCATCC 60.096 50.000 0.00 0.00 45.00 3.51
298 299 2.484264 CACCTGAAAACGAAGTCATCCC 59.516 50.000 0.00 0.00 45.00 3.85
299 300 1.732259 CCTGAAAACGAAGTCATCCCG 59.268 52.381 0.00 0.00 45.00 5.14
300 301 1.128692 CTGAAAACGAAGTCATCCCGC 59.871 52.381 0.00 0.00 45.00 6.13
301 302 0.446616 GAAAACGAAGTCATCCCGCC 59.553 55.000 0.00 0.00 45.00 6.13
302 303 1.296056 AAAACGAAGTCATCCCGCCG 61.296 55.000 0.00 0.00 45.00 6.46
303 304 2.162338 AAACGAAGTCATCCCGCCGA 62.162 55.000 0.00 0.00 45.00 5.54
304 305 2.582498 CGAAGTCATCCCGCCGAC 60.582 66.667 0.00 0.00 0.00 4.79
305 306 2.577059 GAAGTCATCCCGCCGACA 59.423 61.111 0.00 0.00 34.48 4.35
306 307 1.079405 GAAGTCATCCCGCCGACAA 60.079 57.895 0.00 0.00 34.48 3.18
307 308 1.079127 AAGTCATCCCGCCGACAAG 60.079 57.895 0.00 0.00 34.48 3.16
308 309 2.511600 GTCATCCCGCCGACAAGG 60.512 66.667 0.00 0.00 44.97 3.61
317 318 4.547367 CCGACAAGGGCCGGGATC 62.547 72.222 2.18 0.00 41.89 3.36
318 319 4.547367 CGACAAGGGCCGGGATCC 62.547 72.222 1.92 1.92 0.00 3.36
319 320 3.407967 GACAAGGGCCGGGATCCA 61.408 66.667 15.23 0.00 0.00 3.41
320 321 3.699134 GACAAGGGCCGGGATCCAC 62.699 68.421 15.23 1.75 0.00 4.02
321 322 4.506255 CAAGGGCCGGGATCCACC 62.506 72.222 15.23 11.54 38.08 4.61
331 332 4.856801 GATCCACCGCGCACCCAT 62.857 66.667 8.75 0.00 0.00 4.00
338 339 4.155733 CGCGCACCCATGACCCTA 62.156 66.667 8.75 0.00 0.00 3.53
339 340 2.270850 GCGCACCCATGACCCTAA 59.729 61.111 0.30 0.00 0.00 2.69
340 341 1.819632 GCGCACCCATGACCCTAAG 60.820 63.158 0.30 0.00 0.00 2.18
341 342 1.153168 CGCACCCATGACCCTAAGG 60.153 63.158 0.00 0.00 40.04 2.69
342 343 1.453928 GCACCCATGACCCTAAGGC 60.454 63.158 0.00 0.00 36.11 4.35
343 344 1.227383 CACCCATGACCCTAAGGCC 59.773 63.158 0.00 0.00 36.11 5.19
344 345 1.230149 ACCCATGACCCTAAGGCCA 60.230 57.895 5.01 0.00 36.11 5.36
345 346 1.227383 CCCATGACCCTAAGGCCAC 59.773 63.158 5.01 0.00 36.11 5.01
346 347 1.570857 CCCATGACCCTAAGGCCACA 61.571 60.000 5.01 0.00 36.11 4.17
347 348 0.552848 CCATGACCCTAAGGCCACAT 59.447 55.000 5.01 0.00 36.11 3.21
348 349 1.683943 CATGACCCTAAGGCCACATG 58.316 55.000 5.01 5.30 36.71 3.21
349 350 1.212688 CATGACCCTAAGGCCACATGA 59.787 52.381 5.01 0.00 41.18 3.07
350 351 0.911769 TGACCCTAAGGCCACATGAG 59.088 55.000 5.01 0.00 36.11 2.90
351 352 0.912486 GACCCTAAGGCCACATGAGT 59.088 55.000 5.01 0.00 36.11 3.41
352 353 0.912486 ACCCTAAGGCCACATGAGTC 59.088 55.000 5.01 0.00 36.11 3.36
353 354 0.179073 CCCTAAGGCCACATGAGTCG 60.179 60.000 5.01 0.00 0.00 4.18
354 355 0.537188 CCTAAGGCCACATGAGTCGT 59.463 55.000 5.01 0.00 0.00 4.34
355 356 1.645034 CTAAGGCCACATGAGTCGTG 58.355 55.000 5.01 10.92 0.00 4.35
362 363 2.215907 CACATGAGTCGTGGGAGATC 57.784 55.000 16.62 0.00 0.00 2.75
363 364 0.741326 ACATGAGTCGTGGGAGATCG 59.259 55.000 16.62 0.00 0.00 3.69
364 365 0.741326 CATGAGTCGTGGGAGATCGT 59.259 55.000 4.27 0.00 0.00 3.73
365 366 1.135139 CATGAGTCGTGGGAGATCGTT 59.865 52.381 4.27 0.00 0.00 3.85
366 367 2.118313 TGAGTCGTGGGAGATCGTTA 57.882 50.000 0.00 0.00 0.00 3.18
367 368 2.014857 TGAGTCGTGGGAGATCGTTAG 58.985 52.381 0.00 0.00 0.00 2.34
368 369 0.739561 AGTCGTGGGAGATCGTTAGC 59.260 55.000 0.00 0.00 0.00 3.09
369 370 0.454600 GTCGTGGGAGATCGTTAGCA 59.545 55.000 0.00 0.00 0.00 3.49
370 371 0.738975 TCGTGGGAGATCGTTAGCAG 59.261 55.000 0.00 0.00 0.00 4.24
371 372 0.738975 CGTGGGAGATCGTTAGCAGA 59.261 55.000 0.00 0.00 0.00 4.26
372 373 1.338337 CGTGGGAGATCGTTAGCAGAT 59.662 52.381 0.00 0.00 0.00 2.90
373 374 2.552743 CGTGGGAGATCGTTAGCAGATA 59.447 50.000 0.00 0.00 0.00 1.98
374 375 3.004419 CGTGGGAGATCGTTAGCAGATAA 59.996 47.826 0.00 0.00 0.00 1.75
375 376 4.299978 GTGGGAGATCGTTAGCAGATAAC 58.700 47.826 0.00 0.00 40.42 1.89
376 377 4.038162 GTGGGAGATCGTTAGCAGATAACT 59.962 45.833 6.98 0.00 41.46 2.24
377 378 5.241064 GTGGGAGATCGTTAGCAGATAACTA 59.759 44.000 6.98 0.00 41.46 2.24
378 379 5.241064 TGGGAGATCGTTAGCAGATAACTAC 59.759 44.000 6.98 0.00 41.46 2.73
379 380 5.335819 GGGAGATCGTTAGCAGATAACTACC 60.336 48.000 6.98 0.00 41.46 3.18
380 381 5.335819 GGAGATCGTTAGCAGATAACTACCC 60.336 48.000 6.98 0.00 41.46 3.69
381 382 4.523558 AGATCGTTAGCAGATAACTACCCC 59.476 45.833 6.98 0.00 41.46 4.95
382 383 3.907221 TCGTTAGCAGATAACTACCCCT 58.093 45.455 6.98 0.00 41.46 4.79
383 384 3.635373 TCGTTAGCAGATAACTACCCCTG 59.365 47.826 6.98 0.00 41.46 4.45
384 385 3.243771 CGTTAGCAGATAACTACCCCTGG 60.244 52.174 6.98 0.00 41.46 4.45
385 386 1.132500 AGCAGATAACTACCCCTGGC 58.868 55.000 0.00 0.00 0.00 4.85
386 387 0.837272 GCAGATAACTACCCCTGGCA 59.163 55.000 0.00 0.00 0.00 4.92
387 388 1.421646 GCAGATAACTACCCCTGGCAT 59.578 52.381 0.00 0.00 0.00 4.40
388 389 2.811873 GCAGATAACTACCCCTGGCATG 60.812 54.545 0.00 0.00 0.00 4.06
389 390 2.439507 CAGATAACTACCCCTGGCATGT 59.560 50.000 0.00 0.00 0.00 3.21
390 391 2.439507 AGATAACTACCCCTGGCATGTG 59.560 50.000 0.00 0.00 0.00 3.21
391 392 1.959710 TAACTACCCCTGGCATGTGA 58.040 50.000 0.00 0.00 0.00 3.58
392 393 1.298953 AACTACCCCTGGCATGTGAT 58.701 50.000 0.00 0.00 0.00 3.06
393 394 1.298953 ACTACCCCTGGCATGTGATT 58.701 50.000 0.00 0.00 0.00 2.57
394 395 2.487775 ACTACCCCTGGCATGTGATTA 58.512 47.619 0.00 0.00 0.00 1.75
395 396 3.056080 ACTACCCCTGGCATGTGATTAT 58.944 45.455 0.00 0.00 0.00 1.28
396 397 3.463329 ACTACCCCTGGCATGTGATTATT 59.537 43.478 0.00 0.00 0.00 1.40
397 398 3.403228 ACCCCTGGCATGTGATTATTT 57.597 42.857 0.00 0.00 0.00 1.40
398 399 3.299503 ACCCCTGGCATGTGATTATTTC 58.700 45.455 0.00 0.00 0.00 2.17
399 400 3.052642 ACCCCTGGCATGTGATTATTTCT 60.053 43.478 0.00 0.00 0.00 2.52
400 401 3.962718 CCCCTGGCATGTGATTATTTCTT 59.037 43.478 0.00 0.00 0.00 2.52
401 402 4.406649 CCCCTGGCATGTGATTATTTCTTT 59.593 41.667 0.00 0.00 0.00 2.52
402 403 5.353938 CCCTGGCATGTGATTATTTCTTTG 58.646 41.667 0.00 0.00 0.00 2.77
403 404 5.127519 CCCTGGCATGTGATTATTTCTTTGA 59.872 40.000 0.00 0.00 0.00 2.69
404 405 6.270815 CCTGGCATGTGATTATTTCTTTGAG 58.729 40.000 0.00 0.00 0.00 3.02
405 406 6.127535 CCTGGCATGTGATTATTTCTTTGAGT 60.128 38.462 0.00 0.00 0.00 3.41
406 407 7.230849 TGGCATGTGATTATTTCTTTGAGTT 57.769 32.000 0.00 0.00 0.00 3.01
407 408 8.347004 TGGCATGTGATTATTTCTTTGAGTTA 57.653 30.769 0.00 0.00 0.00 2.24
408 409 8.801299 TGGCATGTGATTATTTCTTTGAGTTAA 58.199 29.630 0.00 0.00 0.00 2.01
409 410 9.076596 GGCATGTGATTATTTCTTTGAGTTAAC 57.923 33.333 0.00 0.00 0.00 2.01
410 411 9.624697 GCATGTGATTATTTCTTTGAGTTAACA 57.375 29.630 8.61 0.00 0.00 2.41
420 421 6.000891 TCTTTGAGTTAACATCACACATGC 57.999 37.500 8.61 0.00 0.00 4.06
459 460 5.178061 TCTAGTATGCCATATTTGCATCGG 58.822 41.667 11.72 3.68 46.04 4.18
460 461 3.754965 AGTATGCCATATTTGCATCGGT 58.245 40.909 11.72 0.00 46.04 4.69
462 463 2.867287 TGCCATATTTGCATCGGTTG 57.133 45.000 0.00 0.00 32.85 3.77
467 469 0.333312 TATTTGCATCGGTTGGGGGT 59.667 50.000 0.00 0.00 0.00 4.95
468 470 0.333312 ATTTGCATCGGTTGGGGGTA 59.667 50.000 0.00 0.00 0.00 3.69
469 471 0.322997 TTTGCATCGGTTGGGGGTAG 60.323 55.000 0.00 0.00 0.00 3.18
512 1885 9.649167 CCCCTAACTAAATATCTAAATACACGG 57.351 37.037 0.00 0.00 0.00 4.94
530 1904 2.537560 GCACACTGAAGCACGCAGT 61.538 57.895 0.00 0.00 46.86 4.40
630 2005 9.944376 TGACTCTTTAATTTACTACAAGATGCT 57.056 29.630 0.00 0.00 0.00 3.79
637 2012 4.713824 TTACTACAAGATGCTAGCACGT 57.286 40.909 22.07 16.69 0.00 4.49
705 2083 9.781834 TCTTTAATTTATTTACAAGACGCATGG 57.218 29.630 0.00 0.00 0.00 3.66
781 2161 1.138036 TCCGTGCTGACGTAATCCG 59.862 57.895 0.00 0.00 44.54 4.18
849 2229 1.154016 ATCTTCTGCGTGGACGTCG 60.154 57.895 9.92 0.00 42.22 5.12
860 2240 3.371063 GACGTCGCTGTCCCCAGA 61.371 66.667 0.00 0.00 41.50 3.86
934 2315 1.520600 CCAGCACTTGACTGCATGCA 61.521 55.000 21.29 21.29 40.63 3.96
966 2350 1.079750 GACCGAACCTCAGCTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
1392 2793 9.406828 CTTAGCTTACTGCATATTCGTATACAA 57.593 33.333 3.32 0.00 45.94 2.41
1528 2940 2.882132 GAAATTTGGGCCGGTCGG 59.118 61.111 1.90 4.85 38.57 4.79
1685 3117 3.749064 GGCGCGTCTCTCCAGTCA 61.749 66.667 8.43 0.00 0.00 3.41
1926 3430 2.273557 GCTCGCCGGATGTAACTTTTA 58.726 47.619 5.05 0.00 0.00 1.52
2051 3557 1.817941 AAAAGCACGTCGGCAGTGT 60.818 52.632 12.25 0.00 41.36 3.55
2208 3741 3.740764 GCAGGTTCCAGCAAATTTTGTGA 60.741 43.478 10.65 3.21 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.864686 CTTCATCGGCGGCGGTTG 61.865 66.667 31.73 26.46 0.00 3.77
4 5 4.514577 CTCTTCATCGGCGGCGGT 62.515 66.667 31.73 23.77 0.00 5.68
5 6 3.716539 TTCTCTTCATCGGCGGCGG 62.717 63.158 31.73 16.54 0.00 6.13
6 7 2.202743 TTCTCTTCATCGGCGGCG 60.203 61.111 27.15 27.15 0.00 6.46
7 8 0.741221 AACTTCTCTTCATCGGCGGC 60.741 55.000 7.21 0.00 0.00 6.53
8 9 1.726853 AAACTTCTCTTCATCGGCGG 58.273 50.000 7.21 0.00 0.00 6.13
9 10 3.770666 TCTAAACTTCTCTTCATCGGCG 58.229 45.455 0.00 0.00 0.00 6.46
10 11 4.442733 CGATCTAAACTTCTCTTCATCGGC 59.557 45.833 0.00 0.00 0.00 5.54
11 12 4.979197 CCGATCTAAACTTCTCTTCATCGG 59.021 45.833 2.86 2.86 43.93 4.18
12 13 5.822278 TCCGATCTAAACTTCTCTTCATCG 58.178 41.667 0.00 0.00 33.34 3.84
13 14 6.699642 CCTTCCGATCTAAACTTCTCTTCATC 59.300 42.308 0.00 0.00 0.00 2.92
14 15 6.381420 TCCTTCCGATCTAAACTTCTCTTCAT 59.619 38.462 0.00 0.00 0.00 2.57
15 16 5.715279 TCCTTCCGATCTAAACTTCTCTTCA 59.285 40.000 0.00 0.00 0.00 3.02
16 17 6.210287 TCCTTCCGATCTAAACTTCTCTTC 57.790 41.667 0.00 0.00 0.00 2.87
17 18 6.399743 GTTCCTTCCGATCTAAACTTCTCTT 58.600 40.000 0.00 0.00 0.00 2.85
18 19 5.105269 GGTTCCTTCCGATCTAAACTTCTCT 60.105 44.000 0.00 0.00 0.00 3.10
19 20 5.105269 AGGTTCCTTCCGATCTAAACTTCTC 60.105 44.000 0.00 0.00 0.00 2.87
20 21 4.778427 AGGTTCCTTCCGATCTAAACTTCT 59.222 41.667 0.00 0.00 0.00 2.85
21 22 4.870991 CAGGTTCCTTCCGATCTAAACTTC 59.129 45.833 0.00 0.00 0.00 3.01
22 23 4.530946 TCAGGTTCCTTCCGATCTAAACTT 59.469 41.667 0.00 0.00 0.00 2.66
23 24 4.094476 TCAGGTTCCTTCCGATCTAAACT 58.906 43.478 0.00 0.00 0.00 2.66
24 25 4.467198 TCAGGTTCCTTCCGATCTAAAC 57.533 45.455 0.00 0.00 0.00 2.01
25 26 4.285003 TGTTCAGGTTCCTTCCGATCTAAA 59.715 41.667 0.00 0.00 0.00 1.85
26 27 3.835978 TGTTCAGGTTCCTTCCGATCTAA 59.164 43.478 0.00 0.00 0.00 2.10
27 28 3.194968 GTGTTCAGGTTCCTTCCGATCTA 59.805 47.826 0.00 0.00 0.00 1.98
28 29 2.028020 GTGTTCAGGTTCCTTCCGATCT 60.028 50.000 0.00 0.00 0.00 2.75
29 30 2.289444 TGTGTTCAGGTTCCTTCCGATC 60.289 50.000 0.00 0.00 0.00 3.69
30 31 1.697432 TGTGTTCAGGTTCCTTCCGAT 59.303 47.619 0.00 0.00 0.00 4.18
31 32 1.124780 TGTGTTCAGGTTCCTTCCGA 58.875 50.000 0.00 0.00 0.00 4.55
32 33 1.226746 GTGTGTTCAGGTTCCTTCCG 58.773 55.000 0.00 0.00 0.00 4.30
33 34 2.341846 TGTGTGTTCAGGTTCCTTCC 57.658 50.000 0.00 0.00 0.00 3.46
34 35 3.476552 TCATGTGTGTTCAGGTTCCTTC 58.523 45.455 0.00 0.00 0.00 3.46
35 36 3.576078 TCATGTGTGTTCAGGTTCCTT 57.424 42.857 0.00 0.00 0.00 3.36
36 37 3.576078 TTCATGTGTGTTCAGGTTCCT 57.424 42.857 0.00 0.00 0.00 3.36
37 38 5.957842 TTATTCATGTGTGTTCAGGTTCC 57.042 39.130 0.00 0.00 0.00 3.62
38 39 7.078228 GTCTTTATTCATGTGTGTTCAGGTTC 58.922 38.462 0.00 0.00 0.00 3.62
39 40 6.545666 TGTCTTTATTCATGTGTGTTCAGGTT 59.454 34.615 0.00 0.00 0.00 3.50
40 41 6.061441 TGTCTTTATTCATGTGTGTTCAGGT 58.939 36.000 0.00 0.00 0.00 4.00
41 42 6.558771 TGTCTTTATTCATGTGTGTTCAGG 57.441 37.500 0.00 0.00 0.00 3.86
42 43 7.914871 TGTTTGTCTTTATTCATGTGTGTTCAG 59.085 33.333 0.00 0.00 0.00 3.02
43 44 7.766283 TGTTTGTCTTTATTCATGTGTGTTCA 58.234 30.769 0.00 0.00 0.00 3.18
44 45 8.627487 TTGTTTGTCTTTATTCATGTGTGTTC 57.373 30.769 0.00 0.00 0.00 3.18
45 46 8.994429 TTTGTTTGTCTTTATTCATGTGTGTT 57.006 26.923 0.00 0.00 0.00 3.32
46 47 8.465999 TCTTTGTTTGTCTTTATTCATGTGTGT 58.534 29.630 0.00 0.00 0.00 3.72
47 48 8.745837 GTCTTTGTTTGTCTTTATTCATGTGTG 58.254 33.333 0.00 0.00 0.00 3.82
48 49 7.920682 GGTCTTTGTTTGTCTTTATTCATGTGT 59.079 33.333 0.00 0.00 0.00 3.72
49 50 7.113404 CGGTCTTTGTTTGTCTTTATTCATGTG 59.887 37.037 0.00 0.00 0.00 3.21
50 51 7.138736 CGGTCTTTGTTTGTCTTTATTCATGT 58.861 34.615 0.00 0.00 0.00 3.21
51 52 6.582295 CCGGTCTTTGTTTGTCTTTATTCATG 59.418 38.462 0.00 0.00 0.00 3.07
52 53 6.488683 TCCGGTCTTTGTTTGTCTTTATTCAT 59.511 34.615 0.00 0.00 0.00 2.57
53 54 5.823570 TCCGGTCTTTGTTTGTCTTTATTCA 59.176 36.000 0.00 0.00 0.00 2.57
54 55 6.308371 TCCGGTCTTTGTTTGTCTTTATTC 57.692 37.500 0.00 0.00 0.00 1.75
55 56 6.072119 GGATCCGGTCTTTGTTTGTCTTTATT 60.072 38.462 0.00 0.00 0.00 1.40
56 57 5.414765 GGATCCGGTCTTTGTTTGTCTTTAT 59.585 40.000 0.00 0.00 0.00 1.40
57 58 4.758165 GGATCCGGTCTTTGTTTGTCTTTA 59.242 41.667 0.00 0.00 0.00 1.85
58 59 3.568430 GGATCCGGTCTTTGTTTGTCTTT 59.432 43.478 0.00 0.00 0.00 2.52
59 60 3.146847 GGATCCGGTCTTTGTTTGTCTT 58.853 45.455 0.00 0.00 0.00 3.01
60 61 2.779506 GGATCCGGTCTTTGTTTGTCT 58.220 47.619 0.00 0.00 0.00 3.41
61 62 1.463444 CGGATCCGGTCTTTGTTTGTC 59.537 52.381 26.95 0.00 35.56 3.18
62 63 1.071071 TCGGATCCGGTCTTTGTTTGT 59.929 47.619 32.79 0.00 40.25 2.83
63 64 1.732259 CTCGGATCCGGTCTTTGTTTG 59.268 52.381 32.79 1.18 40.25 2.93
64 65 1.944430 GCTCGGATCCGGTCTTTGTTT 60.944 52.381 32.79 0.00 40.25 2.83
65 66 0.391263 GCTCGGATCCGGTCTTTGTT 60.391 55.000 32.79 0.00 40.25 2.83
66 67 1.218316 GCTCGGATCCGGTCTTTGT 59.782 57.895 32.79 0.00 40.25 2.83
67 68 0.807667 CAGCTCGGATCCGGTCTTTG 60.808 60.000 32.79 19.37 40.25 2.77
68 69 0.970937 TCAGCTCGGATCCGGTCTTT 60.971 55.000 32.79 12.36 40.25 2.52
69 70 0.757188 ATCAGCTCGGATCCGGTCTT 60.757 55.000 32.79 14.11 40.25 3.01
70 71 1.152652 ATCAGCTCGGATCCGGTCT 60.153 57.895 32.79 25.03 40.25 3.85
71 72 1.287503 GATCAGCTCGGATCCGGTC 59.712 63.158 32.79 23.32 38.16 4.79
72 73 3.449349 GATCAGCTCGGATCCGGT 58.551 61.111 32.79 15.87 38.16 5.28
76 77 0.465705 TTGGTGGATCAGCTCGGATC 59.534 55.000 5.64 5.64 42.36 3.36
77 78 1.135094 ATTGGTGGATCAGCTCGGAT 58.865 50.000 0.00 0.00 32.61 4.18
78 79 0.178767 CATTGGTGGATCAGCTCGGA 59.821 55.000 0.00 0.00 32.61 4.55
79 80 0.178767 TCATTGGTGGATCAGCTCGG 59.821 55.000 0.00 0.00 32.61 4.63
80 81 1.293924 GTCATTGGTGGATCAGCTCG 58.706 55.000 0.00 0.00 32.61 5.03
81 82 2.286872 CTGTCATTGGTGGATCAGCTC 58.713 52.381 0.00 0.00 32.61 4.09
82 83 1.681166 GCTGTCATTGGTGGATCAGCT 60.681 52.381 7.56 0.00 39.41 4.24
83 84 0.737219 GCTGTCATTGGTGGATCAGC 59.263 55.000 0.00 0.00 37.57 4.26
84 85 1.340308 TGGCTGTCATTGGTGGATCAG 60.340 52.381 0.00 0.00 0.00 2.90
85 86 0.697658 TGGCTGTCATTGGTGGATCA 59.302 50.000 0.00 0.00 0.00 2.92
86 87 1.952296 GATGGCTGTCATTGGTGGATC 59.048 52.381 0.00 0.00 35.97 3.36
87 88 1.748244 CGATGGCTGTCATTGGTGGAT 60.748 52.381 1.36 0.00 35.97 3.41
88 89 0.392863 CGATGGCTGTCATTGGTGGA 60.393 55.000 1.36 0.00 35.97 4.02
89 90 0.392863 TCGATGGCTGTCATTGGTGG 60.393 55.000 9.50 0.00 37.74 4.61
90 91 0.729116 GTCGATGGCTGTCATTGGTG 59.271 55.000 9.50 0.00 37.74 4.17
91 92 0.392998 GGTCGATGGCTGTCATTGGT 60.393 55.000 9.50 0.00 37.74 3.67
92 93 0.392863 TGGTCGATGGCTGTCATTGG 60.393 55.000 9.50 0.00 37.74 3.16
93 94 1.452110 TTGGTCGATGGCTGTCATTG 58.548 50.000 2.98 2.98 38.37 2.82
94 95 2.198827 TTTGGTCGATGGCTGTCATT 57.801 45.000 0.00 0.00 35.97 2.57
95 96 2.292267 GATTTGGTCGATGGCTGTCAT 58.708 47.619 0.00 0.00 39.13 3.06
96 97 1.678728 GGATTTGGTCGATGGCTGTCA 60.679 52.381 0.00 0.00 0.00 3.58
97 98 1.017387 GGATTTGGTCGATGGCTGTC 58.983 55.000 0.00 0.00 0.00 3.51
98 99 0.394352 GGGATTTGGTCGATGGCTGT 60.394 55.000 0.00 0.00 0.00 4.40
99 100 1.439353 CGGGATTTGGTCGATGGCTG 61.439 60.000 0.00 0.00 0.00 4.85
100 101 1.153168 CGGGATTTGGTCGATGGCT 60.153 57.895 0.00 0.00 0.00 4.75
101 102 2.834618 GCGGGATTTGGTCGATGGC 61.835 63.158 0.00 0.00 0.00 4.40
102 103 2.534019 CGCGGGATTTGGTCGATGG 61.534 63.158 0.00 0.00 0.00 3.51
103 104 1.490693 CTCGCGGGATTTGGTCGATG 61.491 60.000 0.00 0.00 0.00 3.84
104 105 1.227263 CTCGCGGGATTTGGTCGAT 60.227 57.895 0.00 0.00 0.00 3.59
105 106 1.672854 ATCTCGCGGGATTTGGTCGA 61.673 55.000 17.66 0.00 0.00 4.20
106 107 1.215655 GATCTCGCGGGATTTGGTCG 61.216 60.000 24.71 0.00 0.00 4.79
107 108 0.880718 GGATCTCGCGGGATTTGGTC 60.881 60.000 24.71 10.74 0.00 4.02
108 109 1.146263 GGATCTCGCGGGATTTGGT 59.854 57.895 24.71 0.00 0.00 3.67
109 110 1.146041 TGGATCTCGCGGGATTTGG 59.854 57.895 24.71 0.00 0.00 3.28
110 111 1.160329 GGTGGATCTCGCGGGATTTG 61.160 60.000 24.71 0.00 0.00 2.32
111 112 1.146263 GGTGGATCTCGCGGGATTT 59.854 57.895 24.71 1.04 0.00 2.17
112 113 2.032860 CTGGTGGATCTCGCGGGATT 62.033 60.000 24.71 6.79 0.00 3.01
113 114 2.443952 TGGTGGATCTCGCGGGAT 60.444 61.111 24.12 24.12 0.00 3.85
114 115 3.147595 CTGGTGGATCTCGCGGGA 61.148 66.667 13.04 13.04 0.00 5.14
115 116 3.144120 CTCTGGTGGATCTCGCGGG 62.144 68.421 6.13 1.01 0.00 6.13
116 117 2.121538 TCTCTGGTGGATCTCGCGG 61.122 63.158 6.13 0.00 0.00 6.46
117 118 1.064946 GTCTCTGGTGGATCTCGCG 59.935 63.158 0.00 0.00 0.00 5.87
118 119 0.179124 GTGTCTCTGGTGGATCTCGC 60.179 60.000 0.00 0.00 0.00 5.03
119 120 1.135257 GTGTGTCTCTGGTGGATCTCG 60.135 57.143 0.00 0.00 0.00 4.04
120 121 1.205893 GGTGTGTCTCTGGTGGATCTC 59.794 57.143 0.00 0.00 0.00 2.75
121 122 1.203237 AGGTGTGTCTCTGGTGGATCT 60.203 52.381 0.00 0.00 0.00 2.75
122 123 1.205893 GAGGTGTGTCTCTGGTGGATC 59.794 57.143 0.00 0.00 0.00 3.36
123 124 1.270907 GAGGTGTGTCTCTGGTGGAT 58.729 55.000 0.00 0.00 0.00 3.41
124 125 0.832135 GGAGGTGTGTCTCTGGTGGA 60.832 60.000 0.00 0.00 34.39 4.02
125 126 1.121407 TGGAGGTGTGTCTCTGGTGG 61.121 60.000 0.00 0.00 34.39 4.61
126 127 0.034059 GTGGAGGTGTGTCTCTGGTG 59.966 60.000 0.00 0.00 34.39 4.17
127 128 0.398522 TGTGGAGGTGTGTCTCTGGT 60.399 55.000 0.00 0.00 34.39 4.00
128 129 0.034059 GTGTGGAGGTGTGTCTCTGG 59.966 60.000 0.00 0.00 34.39 3.86
129 130 0.752658 TGTGTGGAGGTGTGTCTCTG 59.247 55.000 0.00 0.00 34.39 3.35
130 131 0.753262 GTGTGTGGAGGTGTGTCTCT 59.247 55.000 0.00 0.00 34.39 3.10
131 132 0.249911 GGTGTGTGGAGGTGTGTCTC 60.250 60.000 0.00 0.00 0.00 3.36
132 133 1.696097 GGGTGTGTGGAGGTGTGTCT 61.696 60.000 0.00 0.00 0.00 3.41
133 134 1.227853 GGGTGTGTGGAGGTGTGTC 60.228 63.158 0.00 0.00 0.00 3.67
134 135 2.752807 GGGGTGTGTGGAGGTGTGT 61.753 63.158 0.00 0.00 0.00 3.72
135 136 1.994885 AAGGGGTGTGTGGAGGTGTG 61.995 60.000 0.00 0.00 0.00 3.82
136 137 1.286305 AAAGGGGTGTGTGGAGGTGT 61.286 55.000 0.00 0.00 0.00 4.16
137 138 0.823356 CAAAGGGGTGTGTGGAGGTG 60.823 60.000 0.00 0.00 0.00 4.00
138 139 0.991355 TCAAAGGGGTGTGTGGAGGT 60.991 55.000 0.00 0.00 0.00 3.85
139 140 0.537371 GTCAAAGGGGTGTGTGGAGG 60.537 60.000 0.00 0.00 0.00 4.30
140 141 0.884704 CGTCAAAGGGGTGTGTGGAG 60.885 60.000 0.00 0.00 0.00 3.86
141 142 1.147376 CGTCAAAGGGGTGTGTGGA 59.853 57.895 0.00 0.00 0.00 4.02
142 143 0.250727 ATCGTCAAAGGGGTGTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
143 144 1.156736 GATCGTCAAAGGGGTGTGTG 58.843 55.000 0.00 0.00 0.00 3.82
144 145 0.036306 GGATCGTCAAAGGGGTGTGT 59.964 55.000 0.00 0.00 0.00 3.72
145 146 0.324943 AGGATCGTCAAAGGGGTGTG 59.675 55.000 0.00 0.00 0.00 3.82
146 147 1.831736 CTAGGATCGTCAAAGGGGTGT 59.168 52.381 0.00 0.00 0.00 4.16
147 148 2.108168 TCTAGGATCGTCAAAGGGGTG 58.892 52.381 0.00 0.00 0.00 4.61
148 149 2.108970 GTCTAGGATCGTCAAAGGGGT 58.891 52.381 0.00 0.00 0.00 4.95
149 150 2.108168 TGTCTAGGATCGTCAAAGGGG 58.892 52.381 0.00 0.00 0.00 4.79
150 151 2.496070 TGTGTCTAGGATCGTCAAAGGG 59.504 50.000 0.00 0.00 0.00 3.95
151 152 3.868757 TGTGTCTAGGATCGTCAAAGG 57.131 47.619 0.00 0.00 0.00 3.11
152 153 4.998788 TGATGTGTCTAGGATCGTCAAAG 58.001 43.478 0.00 0.00 0.00 2.77
153 154 5.598416 ATGATGTGTCTAGGATCGTCAAA 57.402 39.130 0.00 0.00 31.20 2.69
154 155 5.351458 CAATGATGTGTCTAGGATCGTCAA 58.649 41.667 0.00 0.00 31.20 3.18
155 156 4.202151 CCAATGATGTGTCTAGGATCGTCA 60.202 45.833 0.00 0.00 0.00 4.35
156 157 4.038042 TCCAATGATGTGTCTAGGATCGTC 59.962 45.833 0.00 0.00 0.00 4.20
157 158 3.960755 TCCAATGATGTGTCTAGGATCGT 59.039 43.478 0.00 0.00 0.00 3.73
158 159 4.302455 GTCCAATGATGTGTCTAGGATCG 58.698 47.826 0.00 0.00 0.00 3.69
159 160 4.302455 CGTCCAATGATGTGTCTAGGATC 58.698 47.826 0.00 0.00 0.00 3.36
160 161 3.070159 CCGTCCAATGATGTGTCTAGGAT 59.930 47.826 0.00 0.00 0.00 3.24
161 162 2.430694 CCGTCCAATGATGTGTCTAGGA 59.569 50.000 0.00 0.00 0.00 2.94
162 163 2.483714 CCCGTCCAATGATGTGTCTAGG 60.484 54.545 0.00 0.00 0.00 3.02
163 164 2.483714 CCCCGTCCAATGATGTGTCTAG 60.484 54.545 0.00 0.00 0.00 2.43
164 165 1.484653 CCCCGTCCAATGATGTGTCTA 59.515 52.381 0.00 0.00 0.00 2.59
165 166 0.253044 CCCCGTCCAATGATGTGTCT 59.747 55.000 0.00 0.00 0.00 3.41
166 167 0.748005 CCCCCGTCCAATGATGTGTC 60.748 60.000 0.00 0.00 0.00 3.67
167 168 1.302949 CCCCCGTCCAATGATGTGT 59.697 57.895 0.00 0.00 0.00 3.72
168 169 2.120909 GCCCCCGTCCAATGATGTG 61.121 63.158 0.00 0.00 0.00 3.21
169 170 0.986019 TAGCCCCCGTCCAATGATGT 60.986 55.000 0.00 0.00 0.00 3.06
170 171 0.250467 CTAGCCCCCGTCCAATGATG 60.250 60.000 0.00 0.00 0.00 3.07
171 172 0.399949 TCTAGCCCCCGTCCAATGAT 60.400 55.000 0.00 0.00 0.00 2.45
172 173 1.002403 TCTAGCCCCCGTCCAATGA 59.998 57.895 0.00 0.00 0.00 2.57
173 174 1.146263 GTCTAGCCCCCGTCCAATG 59.854 63.158 0.00 0.00 0.00 2.82
174 175 2.432300 CGTCTAGCCCCCGTCCAAT 61.432 63.158 0.00 0.00 0.00 3.16
175 176 3.072468 CGTCTAGCCCCCGTCCAA 61.072 66.667 0.00 0.00 0.00 3.53
178 179 4.828296 TCCCGTCTAGCCCCCGTC 62.828 72.222 0.00 0.00 0.00 4.79
179 180 4.387343 TTCCCGTCTAGCCCCCGT 62.387 66.667 0.00 0.00 0.00 5.28
180 181 3.537874 CTTCCCGTCTAGCCCCCG 61.538 72.222 0.00 0.00 0.00 5.73
181 182 1.688187 TTCTTCCCGTCTAGCCCCC 60.688 63.158 0.00 0.00 0.00 5.40
182 183 1.521141 GTTCTTCCCGTCTAGCCCC 59.479 63.158 0.00 0.00 0.00 5.80
183 184 0.976590 AGGTTCTTCCCGTCTAGCCC 60.977 60.000 0.00 0.00 36.75 5.19
184 185 0.903236 AAGGTTCTTCCCGTCTAGCC 59.097 55.000 0.00 0.00 36.75 3.93
185 186 4.370049 GAATAAGGTTCTTCCCGTCTAGC 58.630 47.826 0.00 0.00 36.75 3.42
186 187 4.404715 TGGAATAAGGTTCTTCCCGTCTAG 59.595 45.833 4.83 0.00 40.22 2.43
187 188 4.355549 TGGAATAAGGTTCTTCCCGTCTA 58.644 43.478 4.83 0.00 40.22 2.59
188 189 3.178865 TGGAATAAGGTTCTTCCCGTCT 58.821 45.455 4.83 0.00 40.22 4.18
189 190 3.622166 TGGAATAAGGTTCTTCCCGTC 57.378 47.619 4.83 0.00 40.22 4.79
190 191 3.780850 AGATGGAATAAGGTTCTTCCCGT 59.219 43.478 4.83 0.00 40.22 5.28
191 192 4.423625 AGATGGAATAAGGTTCTTCCCG 57.576 45.455 4.83 0.00 40.22 5.14
192 193 5.755849 TGAAGATGGAATAAGGTTCTTCCC 58.244 41.667 8.12 0.00 40.88 3.97
193 194 7.112779 TCTTGAAGATGGAATAAGGTTCTTCC 58.887 38.462 8.12 0.91 40.88 3.46
194 195 8.567285 TTCTTGAAGATGGAATAAGGTTCTTC 57.433 34.615 0.00 0.00 41.58 2.87
195 196 7.121907 GCTTCTTGAAGATGGAATAAGGTTCTT 59.878 37.037 13.87 0.00 0.00 2.52
196 197 6.601217 GCTTCTTGAAGATGGAATAAGGTTCT 59.399 38.462 13.87 0.00 0.00 3.01
197 198 6.183360 GGCTTCTTGAAGATGGAATAAGGTTC 60.183 42.308 13.87 0.00 0.00 3.62
198 199 5.654209 GGCTTCTTGAAGATGGAATAAGGTT 59.346 40.000 13.87 0.00 0.00 3.50
199 200 5.196695 GGCTTCTTGAAGATGGAATAAGGT 58.803 41.667 13.87 0.00 0.00 3.50
200 201 4.582240 GGGCTTCTTGAAGATGGAATAAGG 59.418 45.833 13.87 0.00 0.00 2.69
201 202 4.582240 GGGGCTTCTTGAAGATGGAATAAG 59.418 45.833 13.87 0.00 0.00 1.73
202 203 4.536765 GGGGCTTCTTGAAGATGGAATAA 58.463 43.478 13.87 0.00 0.00 1.40
203 204 3.117512 GGGGGCTTCTTGAAGATGGAATA 60.118 47.826 13.87 0.00 0.00 1.75
204 205 2.358615 GGGGGCTTCTTGAAGATGGAAT 60.359 50.000 13.87 0.00 0.00 3.01
205 206 1.005924 GGGGGCTTCTTGAAGATGGAA 59.994 52.381 13.87 0.00 0.00 3.53
206 207 0.625849 GGGGGCTTCTTGAAGATGGA 59.374 55.000 13.87 0.00 0.00 3.41
207 208 0.749454 CGGGGGCTTCTTGAAGATGG 60.749 60.000 13.87 1.57 0.00 3.51
208 209 1.379642 GCGGGGGCTTCTTGAAGATG 61.380 60.000 13.87 0.00 0.00 2.90
209 210 1.077429 GCGGGGGCTTCTTGAAGAT 60.077 57.895 13.87 0.00 0.00 2.40
210 211 2.351276 GCGGGGGCTTCTTGAAGA 59.649 61.111 13.87 0.00 0.00 2.87
211 212 2.751837 GGCGGGGGCTTCTTGAAG 60.752 66.667 6.04 6.04 0.00 3.02
212 213 4.715523 CGGCGGGGGCTTCTTGAA 62.716 66.667 0.00 0.00 0.00 2.69
224 225 4.436998 AAGAAGACGAGGCGGCGG 62.437 66.667 9.78 1.88 41.28 6.13
225 226 3.181967 CAAGAAGACGAGGCGGCG 61.182 66.667 0.51 0.51 41.28 6.46
226 227 1.807573 CTCAAGAAGACGAGGCGGC 60.808 63.158 0.00 0.00 33.59 6.53
227 228 1.807573 GCTCAAGAAGACGAGGCGG 60.808 63.158 0.00 0.00 0.00 6.13
228 229 1.075425 CTGCTCAAGAAGACGAGGCG 61.075 60.000 0.00 0.00 0.00 5.52
229 230 0.739112 CCTGCTCAAGAAGACGAGGC 60.739 60.000 0.00 0.00 0.00 4.70
230 231 0.891373 TCCTGCTCAAGAAGACGAGG 59.109 55.000 0.00 0.00 0.00 4.63
231 232 1.270826 TGTCCTGCTCAAGAAGACGAG 59.729 52.381 0.00 0.00 0.00 4.18
232 233 1.000163 GTGTCCTGCTCAAGAAGACGA 60.000 52.381 0.00 0.00 0.00 4.20
233 234 1.269778 TGTGTCCTGCTCAAGAAGACG 60.270 52.381 0.00 0.00 0.00 4.18
234 235 2.533266 TGTGTCCTGCTCAAGAAGAC 57.467 50.000 0.00 0.00 0.00 3.01
235 236 3.206150 GTTTGTGTCCTGCTCAAGAAGA 58.794 45.455 0.00 0.00 32.96 2.87
236 237 2.291741 GGTTTGTGTCCTGCTCAAGAAG 59.708 50.000 0.00 0.00 32.96 2.85
237 238 2.092429 AGGTTTGTGTCCTGCTCAAGAA 60.092 45.455 0.00 0.00 33.62 2.52
238 239 1.490490 AGGTTTGTGTCCTGCTCAAGA 59.510 47.619 0.00 0.00 33.62 3.02
239 240 1.972872 AGGTTTGTGTCCTGCTCAAG 58.027 50.000 0.00 0.00 33.62 3.02
240 241 2.435372 AAGGTTTGTGTCCTGCTCAA 57.565 45.000 0.00 0.00 35.27 3.02
241 242 3.211045 GTTAAGGTTTGTGTCCTGCTCA 58.789 45.455 0.00 0.00 35.27 4.26
242 243 3.211045 TGTTAAGGTTTGTGTCCTGCTC 58.789 45.455 0.00 0.00 35.27 4.26
243 244 3.290948 TGTTAAGGTTTGTGTCCTGCT 57.709 42.857 0.00 0.00 35.27 4.24
244 245 4.379339 TTTGTTAAGGTTTGTGTCCTGC 57.621 40.909 0.00 0.00 35.27 4.85
245 246 5.961272 AGTTTTGTTAAGGTTTGTGTCCTG 58.039 37.500 0.00 0.00 35.27 3.86
246 247 6.209788 TCAAGTTTTGTTAAGGTTTGTGTCCT 59.790 34.615 0.00 0.00 36.81 3.85
247 248 6.391537 TCAAGTTTTGTTAAGGTTTGTGTCC 58.608 36.000 0.00 0.00 0.00 4.02
248 249 7.810759 TCTTCAAGTTTTGTTAAGGTTTGTGTC 59.189 33.333 0.00 0.00 0.00 3.67
249 250 7.662897 TCTTCAAGTTTTGTTAAGGTTTGTGT 58.337 30.769 0.00 0.00 0.00 3.72
250 251 8.527567 TTCTTCAAGTTTTGTTAAGGTTTGTG 57.472 30.769 0.00 0.00 0.00 3.33
251 252 7.330946 GCTTCTTCAAGTTTTGTTAAGGTTTGT 59.669 33.333 0.00 0.00 31.45 2.83
252 253 7.330700 TGCTTCTTCAAGTTTTGTTAAGGTTTG 59.669 33.333 0.00 0.00 31.45 2.93
253 254 7.330946 GTGCTTCTTCAAGTTTTGTTAAGGTTT 59.669 33.333 0.00 0.00 31.45 3.27
254 255 6.811665 GTGCTTCTTCAAGTTTTGTTAAGGTT 59.188 34.615 0.00 0.00 31.45 3.50
255 256 6.330278 GTGCTTCTTCAAGTTTTGTTAAGGT 58.670 36.000 0.00 0.00 31.45 3.50
256 257 5.748630 GGTGCTTCTTCAAGTTTTGTTAAGG 59.251 40.000 0.00 0.00 31.45 2.69
257 258 6.473455 CAGGTGCTTCTTCAAGTTTTGTTAAG 59.527 38.462 0.00 0.00 31.45 1.85
258 259 6.151985 TCAGGTGCTTCTTCAAGTTTTGTTAA 59.848 34.615 0.00 0.00 31.45 2.01
259 260 5.650266 TCAGGTGCTTCTTCAAGTTTTGTTA 59.350 36.000 0.00 0.00 31.45 2.41
260 261 4.462483 TCAGGTGCTTCTTCAAGTTTTGTT 59.538 37.500 0.00 0.00 31.45 2.83
261 262 4.016444 TCAGGTGCTTCTTCAAGTTTTGT 58.984 39.130 0.00 0.00 31.45 2.83
262 263 4.637483 TCAGGTGCTTCTTCAAGTTTTG 57.363 40.909 0.00 0.00 31.45 2.44
263 264 5.659440 TTTCAGGTGCTTCTTCAAGTTTT 57.341 34.783 0.00 0.00 31.45 2.43
264 265 5.410924 GTTTTCAGGTGCTTCTTCAAGTTT 58.589 37.500 0.00 0.00 31.45 2.66
265 266 4.438744 CGTTTTCAGGTGCTTCTTCAAGTT 60.439 41.667 0.00 0.00 31.45 2.66
266 267 3.065371 CGTTTTCAGGTGCTTCTTCAAGT 59.935 43.478 0.00 0.00 31.45 3.16
267 268 3.312421 TCGTTTTCAGGTGCTTCTTCAAG 59.688 43.478 0.00 0.00 0.00 3.02
268 269 3.275143 TCGTTTTCAGGTGCTTCTTCAA 58.725 40.909 0.00 0.00 0.00 2.69
269 270 2.912771 TCGTTTTCAGGTGCTTCTTCA 58.087 42.857 0.00 0.00 0.00 3.02
270 271 3.312697 ACTTCGTTTTCAGGTGCTTCTTC 59.687 43.478 0.00 0.00 0.00 2.87
271 272 3.279434 ACTTCGTTTTCAGGTGCTTCTT 58.721 40.909 0.00 0.00 0.00 2.52
272 273 2.872858 GACTTCGTTTTCAGGTGCTTCT 59.127 45.455 0.00 0.00 0.00 2.85
273 274 2.612212 TGACTTCGTTTTCAGGTGCTTC 59.388 45.455 0.00 0.00 0.00 3.86
274 275 2.639065 TGACTTCGTTTTCAGGTGCTT 58.361 42.857 0.00 0.00 0.00 3.91
275 276 2.325583 TGACTTCGTTTTCAGGTGCT 57.674 45.000 0.00 0.00 0.00 4.40
276 277 2.095718 GGATGACTTCGTTTTCAGGTGC 60.096 50.000 0.00 0.00 0.00 5.01
277 278 2.484264 GGGATGACTTCGTTTTCAGGTG 59.516 50.000 0.00 0.00 0.00 4.00
278 279 2.779506 GGGATGACTTCGTTTTCAGGT 58.220 47.619 0.00 0.00 0.00 4.00
279 280 1.732259 CGGGATGACTTCGTTTTCAGG 59.268 52.381 0.00 0.00 0.00 3.86
280 281 1.128692 GCGGGATGACTTCGTTTTCAG 59.871 52.381 0.00 0.00 0.00 3.02
281 282 1.153353 GCGGGATGACTTCGTTTTCA 58.847 50.000 0.00 0.00 0.00 2.69
282 283 0.446616 GGCGGGATGACTTCGTTTTC 59.553 55.000 0.00 0.00 0.00 2.29
283 284 1.296056 CGGCGGGATGACTTCGTTTT 61.296 55.000 0.00 0.00 0.00 2.43
284 285 1.740296 CGGCGGGATGACTTCGTTT 60.740 57.895 0.00 0.00 0.00 3.60
285 286 2.125673 CGGCGGGATGACTTCGTT 60.126 61.111 0.00 0.00 0.00 3.85
286 287 3.066190 TCGGCGGGATGACTTCGT 61.066 61.111 7.21 0.00 0.00 3.85
287 288 2.582498 GTCGGCGGGATGACTTCG 60.582 66.667 7.21 0.00 32.37 3.79
288 289 1.079405 TTGTCGGCGGGATGACTTC 60.079 57.895 7.21 0.00 36.10 3.01
289 290 1.079127 CTTGTCGGCGGGATGACTT 60.079 57.895 7.21 0.00 36.10 3.01
290 291 2.579201 CTTGTCGGCGGGATGACT 59.421 61.111 7.21 0.00 36.10 3.41
291 292 2.511600 CCTTGTCGGCGGGATGAC 60.512 66.667 7.21 0.00 35.67 3.06
292 293 3.781307 CCCTTGTCGGCGGGATGA 61.781 66.667 7.21 0.00 43.44 2.92
301 302 4.547367 GGATCCCGGCCCTTGTCG 62.547 72.222 0.00 0.00 39.93 4.35
302 303 3.407967 TGGATCCCGGCCCTTGTC 61.408 66.667 9.90 0.00 0.00 3.18
303 304 3.728373 GTGGATCCCGGCCCTTGT 61.728 66.667 9.90 0.00 0.00 3.16
304 305 4.506255 GGTGGATCCCGGCCCTTG 62.506 72.222 9.90 0.00 0.00 3.61
314 315 4.856801 ATGGGTGCGCGGTGGATC 62.857 66.667 8.83 0.00 0.00 3.36
321 322 3.673956 TTAGGGTCATGGGTGCGCG 62.674 63.158 0.00 0.00 0.00 6.86
322 323 1.819632 CTTAGGGTCATGGGTGCGC 60.820 63.158 0.00 0.00 0.00 6.09
323 324 1.153168 CCTTAGGGTCATGGGTGCG 60.153 63.158 0.00 0.00 0.00 5.34
324 325 1.453928 GCCTTAGGGTCATGGGTGC 60.454 63.158 0.00 0.00 34.45 5.01
325 326 1.227383 GGCCTTAGGGTCATGGGTG 59.773 63.158 0.00 0.00 37.14 4.61
326 327 1.230149 TGGCCTTAGGGTCATGGGT 60.230 57.895 3.32 0.00 43.05 4.51
327 328 3.754043 TGGCCTTAGGGTCATGGG 58.246 61.111 3.32 0.00 43.05 4.00
331 332 0.911769 CTCATGTGGCCTTAGGGTCA 59.088 55.000 3.32 0.00 46.10 4.02
332 333 0.912486 ACTCATGTGGCCTTAGGGTC 59.088 55.000 3.32 0.00 37.81 4.46
333 334 0.912486 GACTCATGTGGCCTTAGGGT 59.088 55.000 3.32 0.00 34.45 4.34
334 335 0.179073 CGACTCATGTGGCCTTAGGG 60.179 60.000 3.32 0.00 0.00 3.53
335 336 0.537188 ACGACTCATGTGGCCTTAGG 59.463 55.000 3.32 0.00 0.00 2.69
336 337 1.645034 CACGACTCATGTGGCCTTAG 58.355 55.000 3.32 0.00 33.69 2.18
337 338 3.832704 CACGACTCATGTGGCCTTA 57.167 52.632 3.32 0.00 33.69 2.69
338 339 4.701663 CACGACTCATGTGGCCTT 57.298 55.556 3.32 0.00 33.69 4.35
343 344 1.534805 CGATCTCCCACGACTCATGTG 60.535 57.143 0.00 0.00 37.09 3.21
344 345 0.741326 CGATCTCCCACGACTCATGT 59.259 55.000 0.00 0.00 0.00 3.21
345 346 0.741326 ACGATCTCCCACGACTCATG 59.259 55.000 0.00 0.00 0.00 3.07
346 347 1.475403 AACGATCTCCCACGACTCAT 58.525 50.000 0.00 0.00 0.00 2.90
347 348 2.014857 CTAACGATCTCCCACGACTCA 58.985 52.381 0.00 0.00 0.00 3.41
348 349 1.268640 GCTAACGATCTCCCACGACTC 60.269 57.143 0.00 0.00 0.00 3.36
349 350 0.739561 GCTAACGATCTCCCACGACT 59.260 55.000 0.00 0.00 0.00 4.18
350 351 0.454600 TGCTAACGATCTCCCACGAC 59.545 55.000 0.00 0.00 0.00 4.34
351 352 0.738975 CTGCTAACGATCTCCCACGA 59.261 55.000 0.00 0.00 0.00 4.35
352 353 0.738975 TCTGCTAACGATCTCCCACG 59.261 55.000 0.00 0.00 0.00 4.94
353 354 4.038162 AGTTATCTGCTAACGATCTCCCAC 59.962 45.833 0.00 0.00 43.78 4.61
354 355 4.215908 AGTTATCTGCTAACGATCTCCCA 58.784 43.478 0.00 0.00 43.78 4.37
355 356 4.857509 AGTTATCTGCTAACGATCTCCC 57.142 45.455 0.00 0.00 43.78 4.30
356 357 5.335819 GGGTAGTTATCTGCTAACGATCTCC 60.336 48.000 0.00 0.00 43.78 3.71
357 358 5.335819 GGGGTAGTTATCTGCTAACGATCTC 60.336 48.000 0.00 0.00 43.78 2.75
358 359 4.523558 GGGGTAGTTATCTGCTAACGATCT 59.476 45.833 0.00 0.00 43.78 2.75
359 360 4.523558 AGGGGTAGTTATCTGCTAACGATC 59.476 45.833 0.00 0.00 43.78 3.69
360 361 4.281182 CAGGGGTAGTTATCTGCTAACGAT 59.719 45.833 0.00 0.00 43.78 3.73
361 362 3.635373 CAGGGGTAGTTATCTGCTAACGA 59.365 47.826 0.00 0.00 43.78 3.85
362 363 3.243771 CCAGGGGTAGTTATCTGCTAACG 60.244 52.174 0.00 0.00 43.78 3.18
363 364 3.494573 GCCAGGGGTAGTTATCTGCTAAC 60.495 52.174 0.00 0.00 40.11 2.34
364 365 2.704065 GCCAGGGGTAGTTATCTGCTAA 59.296 50.000 0.00 0.00 0.00 3.09
365 366 2.326428 GCCAGGGGTAGTTATCTGCTA 58.674 52.381 0.00 0.00 0.00 3.49
366 367 1.132500 GCCAGGGGTAGTTATCTGCT 58.868 55.000 0.00 0.00 0.00 4.24
367 368 0.837272 TGCCAGGGGTAGTTATCTGC 59.163 55.000 0.00 0.00 0.00 4.26
368 369 2.439507 ACATGCCAGGGGTAGTTATCTG 59.560 50.000 0.00 0.00 0.00 2.90
369 370 2.439507 CACATGCCAGGGGTAGTTATCT 59.560 50.000 0.00 0.00 0.00 1.98
370 371 2.438021 TCACATGCCAGGGGTAGTTATC 59.562 50.000 0.00 0.00 0.00 1.75
371 372 2.487775 TCACATGCCAGGGGTAGTTAT 58.512 47.619 0.00 0.00 0.00 1.89
372 373 1.959710 TCACATGCCAGGGGTAGTTA 58.040 50.000 0.00 0.00 0.00 2.24
373 374 1.298953 ATCACATGCCAGGGGTAGTT 58.701 50.000 0.00 0.00 0.00 2.24
374 375 1.298953 AATCACATGCCAGGGGTAGT 58.701 50.000 0.00 0.00 0.00 2.73
375 376 3.795688 ATAATCACATGCCAGGGGTAG 57.204 47.619 0.00 0.00 0.00 3.18
376 377 4.167892 AGAAATAATCACATGCCAGGGGTA 59.832 41.667 0.00 0.00 0.00 3.69
377 378 3.052642 AGAAATAATCACATGCCAGGGGT 60.053 43.478 0.00 0.00 0.00 4.95
378 379 3.569491 AGAAATAATCACATGCCAGGGG 58.431 45.455 0.00 0.00 0.00 4.79
379 380 5.127519 TCAAAGAAATAATCACATGCCAGGG 59.872 40.000 0.00 0.00 0.00 4.45
380 381 6.127535 ACTCAAAGAAATAATCACATGCCAGG 60.128 38.462 0.00 0.00 0.00 4.45
381 382 6.860080 ACTCAAAGAAATAATCACATGCCAG 58.140 36.000 0.00 0.00 0.00 4.85
382 383 6.839124 ACTCAAAGAAATAATCACATGCCA 57.161 33.333 0.00 0.00 0.00 4.92
383 384 9.076596 GTTAACTCAAAGAAATAATCACATGCC 57.923 33.333 0.00 0.00 0.00 4.40
384 385 9.624697 TGTTAACTCAAAGAAATAATCACATGC 57.375 29.630 7.22 0.00 0.00 4.06
394 395 7.596248 GCATGTGTGATGTTAACTCAAAGAAAT 59.404 33.333 7.22 0.00 0.00 2.17
395 396 6.917477 GCATGTGTGATGTTAACTCAAAGAAA 59.083 34.615 7.22 0.00 0.00 2.52
396 397 6.039159 TGCATGTGTGATGTTAACTCAAAGAA 59.961 34.615 7.22 0.00 0.00 2.52
397 398 5.530543 TGCATGTGTGATGTTAACTCAAAGA 59.469 36.000 7.22 2.86 0.00 2.52
398 399 5.761003 TGCATGTGTGATGTTAACTCAAAG 58.239 37.500 7.22 0.00 0.00 2.77
399 400 5.764487 TGCATGTGTGATGTTAACTCAAA 57.236 34.783 7.22 0.93 0.00 2.69
400 401 5.299028 AGTTGCATGTGTGATGTTAACTCAA 59.701 36.000 7.22 0.00 29.42 3.02
401 402 4.821260 AGTTGCATGTGTGATGTTAACTCA 59.179 37.500 7.22 5.51 29.42 3.41
402 403 5.049474 TGAGTTGCATGTGTGATGTTAACTC 60.049 40.000 7.22 17.59 40.90 3.01
403 404 4.821260 TGAGTTGCATGTGTGATGTTAACT 59.179 37.500 7.22 0.00 34.12 2.24
404 405 5.107109 TGAGTTGCATGTGTGATGTTAAC 57.893 39.130 0.00 0.00 0.00 2.01
405 406 5.764487 TTGAGTTGCATGTGTGATGTTAA 57.236 34.783 0.00 0.00 0.00 2.01
406 407 5.530543 TCTTTGAGTTGCATGTGTGATGTTA 59.469 36.000 0.00 0.00 0.00 2.41
407 408 4.338964 TCTTTGAGTTGCATGTGTGATGTT 59.661 37.500 0.00 0.00 0.00 2.71
408 409 3.884693 TCTTTGAGTTGCATGTGTGATGT 59.115 39.130 0.00 0.00 0.00 3.06
409 410 4.492791 TCTTTGAGTTGCATGTGTGATG 57.507 40.909 0.00 0.00 0.00 3.07
410 411 5.518848 TTTCTTTGAGTTGCATGTGTGAT 57.481 34.783 0.00 0.00 0.00 3.06
411 412 4.979943 TTTCTTTGAGTTGCATGTGTGA 57.020 36.364 0.00 0.00 0.00 3.58
412 413 7.811236 AGATTATTTCTTTGAGTTGCATGTGTG 59.189 33.333 0.00 0.00 0.00 3.82
413 414 7.889469 AGATTATTTCTTTGAGTTGCATGTGT 58.111 30.769 0.00 0.00 0.00 3.72
414 415 9.499585 CTAGATTATTTCTTTGAGTTGCATGTG 57.500 33.333 0.00 0.00 35.79 3.21
415 416 9.236006 ACTAGATTATTTCTTTGAGTTGCATGT 57.764 29.630 0.00 0.00 35.79 3.21
419 420 9.657121 GCATACTAGATTATTTCTTTGAGTTGC 57.343 33.333 0.00 0.00 35.79 4.17
459 460 1.381191 CATTGCCCCTACCCCCAAC 60.381 63.158 0.00 0.00 0.00 3.77
460 461 1.447964 AACATTGCCCCTACCCCCAA 61.448 55.000 0.00 0.00 0.00 4.12
462 463 0.252513 AAAACATTGCCCCTACCCCC 60.253 55.000 0.00 0.00 0.00 5.40
467 469 2.635427 GGGAACAAAAACATTGCCCCTA 59.365 45.455 10.30 0.00 34.64 3.53
468 470 1.419762 GGGAACAAAAACATTGCCCCT 59.580 47.619 10.30 0.00 34.64 4.79
469 471 1.890876 GGGAACAAAAACATTGCCCC 58.109 50.000 0.00 4.27 30.45 5.80
512 1885 2.051804 AACTGCGTGCTTCAGTGTGC 62.052 55.000 6.80 4.40 43.36 4.57
530 1904 6.658188 AATCTTAACGATTTTGTTCCCCAA 57.342 33.333 0.00 0.00 39.28 4.12
594 1969 3.446310 TTAAAGAGTCAGCACACACGA 57.554 42.857 0.00 0.00 0.00 4.35
653 2028 1.935933 ACGCACCGAATACCTCATTC 58.064 50.000 0.00 0.00 39.84 2.67
654 2029 2.093658 AGAACGCACCGAATACCTCATT 60.094 45.455 0.00 0.00 0.00 2.57
703 2081 4.759130 CTCTTTGGAGGTGGATCGATCCA 61.759 52.174 37.61 37.61 46.69 3.41
704 2082 2.224161 CTCTTTGGAGGTGGATCGATCC 60.224 54.545 33.41 33.41 40.28 3.36
705 2083 3.104843 CTCTTTGGAGGTGGATCGATC 57.895 52.381 17.36 17.36 36.03 3.69
781 2161 1.331399 GGTCTCCCTGGGTGCTACTC 61.331 65.000 13.56 0.00 0.00 2.59
819 2199 1.457303 GCAGAAGATGACGTCACACAC 59.543 52.381 22.71 12.89 0.00 3.82
866 2247 2.961062 GGGTATATATATGCCGGGTCGT 59.039 50.000 19.88 0.00 39.09 4.34
876 2257 7.927683 AGCATCTCAGCAAGGGTATATATAT 57.072 36.000 0.00 0.00 36.85 0.86
934 2315 1.079819 CGGTCGGTCAATGAGCTGT 60.080 57.895 10.85 0.00 0.00 4.40
1166 2558 3.133437 TCATCCCGATCAGGAGGAC 57.867 57.895 8.26 0.00 41.62 3.85
1368 2769 9.923143 ATTTGTATACGAATATGCAGTAAGCTA 57.077 29.630 15.50 0.00 45.94 3.32
1528 2940 0.528466 TTGATCGGACGCTGCTGATC 60.528 55.000 14.27 14.27 46.27 2.92
1926 3430 0.533491 TTGCTACAACCGGCGACTAT 59.467 50.000 9.30 0.00 0.00 2.12
2208 3741 0.466543 TCAACGGTGCTACAACCAGT 59.533 50.000 0.00 0.00 40.53 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.