Multiple sequence alignment - TraesCS1B01G323200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G323200 chr1B 100.000 2669 0 0 1 2669 548277730 548280398 0.000000e+00 4929.0
1 TraesCS1B01G323200 chr1B 82.706 983 125 23 808 1767 548300391 548301351 0.000000e+00 832.0
2 TraesCS1B01G323200 chr1B 80.191 1045 161 28 846 1878 548390900 548391910 0.000000e+00 741.0
3 TraesCS1B01G323200 chr1B 85.396 719 82 13 995 1710 548292929 548293627 0.000000e+00 725.0
4 TraesCS1B01G323200 chr1B 90.644 481 41 3 1070 1550 548202917 548203393 1.040000e-178 636.0
5 TraesCS1B01G323200 chr1B 78.733 221 27 10 197 399 629495578 629495796 2.160000e-26 130.0
6 TraesCS1B01G323200 chr1D 91.228 1254 72 19 753 1992 407695628 407696857 0.000000e+00 1672.0
7 TraesCS1B01G323200 chr1D 80.688 989 137 23 846 1823 407823179 407824124 0.000000e+00 719.0
8 TraesCS1B01G323200 chr1D 81.610 919 108 30 846 1717 407803508 407804412 0.000000e+00 704.0
9 TraesCS1B01G323200 chr1D 91.505 412 32 3 155 564 407694058 407694468 4.990000e-157 564.0
10 TraesCS1B01G323200 chr1D 83.420 386 29 12 2251 2616 407700625 407700995 2.560000e-85 326.0
11 TraesCS1B01G323200 chr1D 93.158 190 10 1 567 756 407694640 407694826 2.620000e-70 276.0
12 TraesCS1B01G323200 chr1D 92.771 166 12 0 2082 2247 318726669 318726504 9.550000e-60 241.0
13 TraesCS1B01G323200 chr1D 79.464 224 26 10 196 399 391246919 391247142 9.960000e-30 141.0
14 TraesCS1B01G323200 chr1A 85.714 952 77 26 842 1767 503325233 503326151 0.000000e+00 950.0
15 TraesCS1B01G323200 chr1A 81.818 187 17 6 2038 2224 399475699 399475868 9.960000e-30 141.0
16 TraesCS1B01G323200 chr1A 86.170 94 11 2 710 802 503325044 503325136 1.690000e-17 100.0
17 TraesCS1B01G323200 chr1A 91.667 60 5 0 20 79 552146174 552146233 1.700000e-12 84.2
18 TraesCS1B01G323200 chr1A 88.889 63 7 0 17 79 535767824 535767886 7.920000e-11 78.7
19 TraesCS1B01G323200 chr3B 81.113 683 88 28 983 1663 684268917 684268274 2.370000e-140 508.0
20 TraesCS1B01G323200 chr3B 80.229 698 92 29 983 1675 684413235 684412579 1.440000e-132 483.0
21 TraesCS1B01G323200 chr3B 79.397 597 90 24 983 1575 684328223 684327656 8.960000e-105 390.0
22 TraesCS1B01G323200 chr3B 93.976 166 10 0 2082 2247 732155204 732155039 4.410000e-63 252.0
23 TraesCS1B01G323200 chr3B 92.638 163 12 0 2082 2244 384655910 384656072 4.440000e-58 235.0
24 TraesCS1B01G323200 chr3B 84.821 112 13 4 195 305 688150271 688150163 2.810000e-20 110.0
25 TraesCS1B01G323200 chr3B 100.000 28 0 0 2038 2065 726615590 726615563 5.000000e-03 52.8
26 TraesCS1B01G323200 chr3A 80.432 695 89 34 983 1672 655080903 655080251 1.110000e-133 486.0
27 TraesCS1B01G323200 chr3D 83.220 441 55 15 1274 1710 519947714 519947289 1.160000e-103 387.0
28 TraesCS1B01G323200 chr3D 90.857 175 16 0 2080 2254 556911069 556910895 4.440000e-58 235.0
29 TraesCS1B01G323200 chr2D 93.252 163 11 0 2082 2244 632583174 632583336 9.550000e-60 241.0
30 TraesCS1B01G323200 chr2D 78.924 223 28 10 196 399 575775872 575776094 1.670000e-27 134.0
31 TraesCS1B01G323200 chr2D 81.301 123 18 5 273 392 8071327 8071207 7.870000e-16 95.3
32 TraesCS1B01G323200 chr2D 91.304 69 6 0 71 139 125731153 125731221 7.870000e-16 95.3
33 TraesCS1B01G323200 chr6B 92.638 163 12 0 2082 2244 335547900 335548062 4.440000e-58 235.0
34 TraesCS1B01G323200 chr6B 88.235 187 21 1 2082 2268 692003470 692003655 3.460000e-54 222.0
35 TraesCS1B01G323200 chr6B 84.545 110 15 1 292 399 659674343 659674234 1.010000e-19 108.0
36 TraesCS1B01G323200 chr4A 92.638 163 12 0 2082 2244 710287374 710287536 4.440000e-58 235.0
37 TraesCS1B01G323200 chr4A 88.372 86 8 1 292 375 31397061 31397146 4.700000e-18 102.0
38 TraesCS1B01G323200 chr2B 92.638 163 12 0 2082 2244 104013188 104013350 4.440000e-58 235.0
39 TraesCS1B01G323200 chr2B 88.732 71 8 0 71 141 776136142 776136212 1.320000e-13 87.9
40 TraesCS1B01G323200 chr2B 88.406 69 8 0 71 139 315130 315198 1.700000e-12 84.2
41 TraesCS1B01G323200 chr2B 100.000 30 0 0 2038 2067 219463675 219463704 3.710000e-04 56.5
42 TraesCS1B01G323200 chr6D 89.222 167 17 1 2087 2253 402874440 402874275 9.680000e-50 207.0
43 TraesCS1B01G323200 chr6D 91.304 69 6 0 71 139 6389748 6389816 7.870000e-16 95.3
44 TraesCS1B01G323200 chr6D 90.141 71 7 0 71 141 68581213 68581283 2.830000e-15 93.5
45 TraesCS1B01G323200 chr6D 89.706 68 7 0 74 141 155232020 155232087 1.320000e-13 87.9
46 TraesCS1B01G323200 chr5D 89.441 161 17 0 2087 2247 440743699 440743539 1.250000e-48 204.0
47 TraesCS1B01G323200 chr7D 90.000 120 12 0 20 139 105290517 105290398 3.560000e-34 156.0
48 TraesCS1B01G323200 chr5A 85.455 110 14 1 292 399 541999160 541999269 2.170000e-21 113.0
49 TraesCS1B01G323200 chr5A 84.545 110 15 2 292 399 703663930 703663821 1.010000e-19 108.0
50 TraesCS1B01G323200 chr5A 92.157 51 3 1 29 79 395904215 395904166 1.330000e-08 71.3
51 TraesCS1B01G323200 chr4B 89.855 69 6 1 71 139 457411926 457411859 1.320000e-13 87.9
52 TraesCS1B01G323200 chr4B 88.406 69 7 1 72 140 621989385 621989452 6.120000e-12 82.4
53 TraesCS1B01G323200 chr6A 87.500 72 8 1 71 142 86302245 86302315 6.120000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G323200 chr1B 548277730 548280398 2668 False 4929.0 4929 100.00000 1 2669 1 chr1B.!!$F2 2668
1 TraesCS1B01G323200 chr1B 548300391 548301351 960 False 832.0 832 82.70600 808 1767 1 chr1B.!!$F4 959
2 TraesCS1B01G323200 chr1B 548390900 548391910 1010 False 741.0 741 80.19100 846 1878 1 chr1B.!!$F5 1032
3 TraesCS1B01G323200 chr1B 548292929 548293627 698 False 725.0 725 85.39600 995 1710 1 chr1B.!!$F3 715
4 TraesCS1B01G323200 chr1D 407823179 407824124 945 False 719.0 719 80.68800 846 1823 1 chr1D.!!$F3 977
5 TraesCS1B01G323200 chr1D 407694058 407700995 6937 False 709.5 1672 89.82775 155 2616 4 chr1D.!!$F4 2461
6 TraesCS1B01G323200 chr1D 407803508 407804412 904 False 704.0 704 81.61000 846 1717 1 chr1D.!!$F2 871
7 TraesCS1B01G323200 chr1A 503325044 503326151 1107 False 525.0 950 85.94200 710 1767 2 chr1A.!!$F4 1057
8 TraesCS1B01G323200 chr3B 684268274 684268917 643 True 508.0 508 81.11300 983 1663 1 chr3B.!!$R1 680
9 TraesCS1B01G323200 chr3B 684412579 684413235 656 True 483.0 483 80.22900 983 1675 1 chr3B.!!$R3 692
10 TraesCS1B01G323200 chr3B 684327656 684328223 567 True 390.0 390 79.39700 983 1575 1 chr3B.!!$R2 592
11 TraesCS1B01G323200 chr3A 655080251 655080903 652 True 486.0 486 80.43200 983 1672 1 chr3A.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.040781 GCGTGGCTCTCTATCGAGAC 60.041 60.0 0.0 0.0 41.26 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 3041 0.035458 CTTGGAGCCGAACAAGAGGT 59.965 55.0 0.0 0.0 45.22 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.336809 CCGGCGTGGCTCTCTATC 59.663 66.667 6.01 0.00 0.00 2.08
18 19 2.050895 CGGCGTGGCTCTCTATCG 60.051 66.667 0.00 0.00 0.00 2.92
19 20 2.543802 CGGCGTGGCTCTCTATCGA 61.544 63.158 0.00 0.00 0.00 3.59
20 21 1.284408 GGCGTGGCTCTCTATCGAG 59.716 63.158 0.00 0.00 38.67 4.04
21 22 1.167155 GGCGTGGCTCTCTATCGAGA 61.167 60.000 0.00 0.00 43.82 4.04
22 23 0.040781 GCGTGGCTCTCTATCGAGAC 60.041 60.000 0.00 0.00 41.26 3.36
23 24 1.300481 CGTGGCTCTCTATCGAGACA 58.700 55.000 0.00 0.00 46.46 3.41
26 27 3.006112 TGGCTCTCTATCGAGACAAGT 57.994 47.619 0.00 0.00 45.70 3.16
27 28 3.357203 TGGCTCTCTATCGAGACAAGTT 58.643 45.455 0.00 0.00 45.70 2.66
28 29 3.764434 TGGCTCTCTATCGAGACAAGTTT 59.236 43.478 0.00 0.00 45.70 2.66
29 30 4.109050 GGCTCTCTATCGAGACAAGTTTG 58.891 47.826 0.00 0.00 41.26 2.93
30 31 3.549873 GCTCTCTATCGAGACAAGTTTGC 59.450 47.826 0.00 0.00 41.26 3.68
31 32 4.676723 GCTCTCTATCGAGACAAGTTTGCT 60.677 45.833 0.00 0.00 41.26 3.91
32 33 5.392767 TCTCTATCGAGACAAGTTTGCTT 57.607 39.130 0.00 0.00 41.26 3.91
33 34 6.510879 TCTCTATCGAGACAAGTTTGCTTA 57.489 37.500 0.00 0.00 41.26 3.09
34 35 6.920817 TCTCTATCGAGACAAGTTTGCTTAA 58.079 36.000 0.00 0.00 41.26 1.85
35 36 7.030165 TCTCTATCGAGACAAGTTTGCTTAAG 58.970 38.462 0.00 0.00 41.26 1.85
36 37 6.688578 TCTATCGAGACAAGTTTGCTTAAGT 58.311 36.000 4.02 0.00 32.87 2.24
37 38 5.597813 ATCGAGACAAGTTTGCTTAAGTG 57.402 39.130 4.02 0.00 32.87 3.16
38 39 4.689071 TCGAGACAAGTTTGCTTAAGTGA 58.311 39.130 4.02 0.00 32.87 3.41
39 40 4.506654 TCGAGACAAGTTTGCTTAAGTGAC 59.493 41.667 4.02 1.03 32.87 3.67
40 41 4.270084 CGAGACAAGTTTGCTTAAGTGACA 59.730 41.667 4.02 0.00 32.87 3.58
41 42 5.050091 CGAGACAAGTTTGCTTAAGTGACAT 60.050 40.000 4.02 0.00 32.87 3.06
42 43 6.064846 AGACAAGTTTGCTTAAGTGACATG 57.935 37.500 4.02 6.53 32.87 3.21
43 44 5.590259 AGACAAGTTTGCTTAAGTGACATGT 59.410 36.000 0.00 0.00 32.87 3.21
44 45 6.765989 AGACAAGTTTGCTTAAGTGACATGTA 59.234 34.615 0.00 0.00 32.87 2.29
45 46 6.959361 ACAAGTTTGCTTAAGTGACATGTAG 58.041 36.000 0.00 0.00 32.87 2.74
46 47 6.542370 ACAAGTTTGCTTAAGTGACATGTAGT 59.458 34.615 0.00 0.00 32.87 2.73
47 48 7.067008 ACAAGTTTGCTTAAGTGACATGTAGTT 59.933 33.333 0.00 0.00 32.87 2.24
48 49 8.556194 CAAGTTTGCTTAAGTGACATGTAGTTA 58.444 33.333 0.00 0.00 32.87 2.24
49 50 8.671384 AGTTTGCTTAAGTGACATGTAGTTAA 57.329 30.769 0.00 6.73 0.00 2.01
50 51 9.284968 AGTTTGCTTAAGTGACATGTAGTTAAT 57.715 29.630 0.00 0.00 0.00 1.40
51 52 9.329913 GTTTGCTTAAGTGACATGTAGTTAATG 57.670 33.333 0.00 4.01 0.00 1.90
52 53 8.840833 TTGCTTAAGTGACATGTAGTTAATGA 57.159 30.769 0.00 0.00 0.00 2.57
53 54 8.479313 TGCTTAAGTGACATGTAGTTAATGAG 57.521 34.615 0.00 0.00 0.00 2.90
54 55 7.549134 TGCTTAAGTGACATGTAGTTAATGAGG 59.451 37.037 0.00 0.00 0.00 3.86
55 56 7.764443 GCTTAAGTGACATGTAGTTAATGAGGA 59.236 37.037 0.00 0.00 0.00 3.71
56 57 9.307121 CTTAAGTGACATGTAGTTAATGAGGAG 57.693 37.037 0.00 0.00 0.00 3.69
57 58 7.482169 AAGTGACATGTAGTTAATGAGGAGA 57.518 36.000 0.00 0.00 0.00 3.71
58 59 7.106439 AGTGACATGTAGTTAATGAGGAGAG 57.894 40.000 0.00 0.00 0.00 3.20
59 60 6.097554 AGTGACATGTAGTTAATGAGGAGAGG 59.902 42.308 0.00 0.00 0.00 3.69
60 61 5.363868 TGACATGTAGTTAATGAGGAGAGGG 59.636 44.000 0.00 0.00 0.00 4.30
61 62 4.656112 ACATGTAGTTAATGAGGAGAGGGG 59.344 45.833 0.00 0.00 0.00 4.79
62 63 4.348020 TGTAGTTAATGAGGAGAGGGGT 57.652 45.455 0.00 0.00 0.00 4.95
63 64 4.030913 TGTAGTTAATGAGGAGAGGGGTG 58.969 47.826 0.00 0.00 0.00 4.61
64 65 3.207044 AGTTAATGAGGAGAGGGGTGT 57.793 47.619 0.00 0.00 0.00 4.16
65 66 3.532102 AGTTAATGAGGAGAGGGGTGTT 58.468 45.455 0.00 0.00 0.00 3.32
66 67 3.916989 AGTTAATGAGGAGAGGGGTGTTT 59.083 43.478 0.00 0.00 0.00 2.83
67 68 5.098663 AGTTAATGAGGAGAGGGGTGTTTA 58.901 41.667 0.00 0.00 0.00 2.01
68 69 5.189934 AGTTAATGAGGAGAGGGGTGTTTAG 59.810 44.000 0.00 0.00 0.00 1.85
69 70 3.491766 ATGAGGAGAGGGGTGTTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
70 71 2.821437 TGAGGAGAGGGGTGTTTAGAG 58.179 52.381 0.00 0.00 0.00 2.43
71 72 2.111972 TGAGGAGAGGGGTGTTTAGAGT 59.888 50.000 0.00 0.00 0.00 3.24
72 73 3.335786 TGAGGAGAGGGGTGTTTAGAGTA 59.664 47.826 0.00 0.00 0.00 2.59
73 74 4.202749 TGAGGAGAGGGGTGTTTAGAGTAA 60.203 45.833 0.00 0.00 0.00 2.24
74 75 4.095211 AGGAGAGGGGTGTTTAGAGTAAC 58.905 47.826 0.00 0.00 0.00 2.50
75 76 3.836562 GGAGAGGGGTGTTTAGAGTAACA 59.163 47.826 0.00 0.00 35.75 2.41
76 77 4.470304 GGAGAGGGGTGTTTAGAGTAACAT 59.530 45.833 0.00 0.00 39.93 2.71
77 78 5.659971 GGAGAGGGGTGTTTAGAGTAACATA 59.340 44.000 0.00 0.00 39.93 2.29
78 79 6.155737 GGAGAGGGGTGTTTAGAGTAACATAA 59.844 42.308 0.00 0.00 39.93 1.90
79 80 6.944096 AGAGGGGTGTTTAGAGTAACATAAC 58.056 40.000 0.00 0.00 39.93 1.89
80 81 5.727434 AGGGGTGTTTAGAGTAACATAACG 58.273 41.667 0.00 0.00 39.93 3.18
81 82 5.246883 AGGGGTGTTTAGAGTAACATAACGT 59.753 40.000 0.00 0.00 39.93 3.99
82 83 6.437162 AGGGGTGTTTAGAGTAACATAACGTA 59.563 38.462 0.00 0.00 39.93 3.57
83 84 7.039082 AGGGGTGTTTAGAGTAACATAACGTAA 60.039 37.037 0.00 0.00 39.93 3.18
84 85 7.063426 GGGGTGTTTAGAGTAACATAACGTAAC 59.937 40.741 0.00 0.00 39.93 2.50
85 86 7.063426 GGGTGTTTAGAGTAACATAACGTAACC 59.937 40.741 0.00 0.00 39.93 2.85
86 87 7.063426 GGTGTTTAGAGTAACATAACGTAACCC 59.937 40.741 0.00 0.00 39.93 4.11
87 88 7.598493 GTGTTTAGAGTAACATAACGTAACCCA 59.402 37.037 0.00 0.00 39.93 4.51
88 89 8.147058 TGTTTAGAGTAACATAACGTAACCCAA 58.853 33.333 0.00 0.00 33.31 4.12
89 90 8.987890 GTTTAGAGTAACATAACGTAACCCAAA 58.012 33.333 0.00 0.00 0.00 3.28
90 91 8.761575 TTAGAGTAACATAACGTAACCCAAAG 57.238 34.615 0.00 0.00 0.00 2.77
91 92 6.762333 AGAGTAACATAACGTAACCCAAAGT 58.238 36.000 0.00 0.00 0.00 2.66
92 93 7.895759 AGAGTAACATAACGTAACCCAAAGTA 58.104 34.615 0.00 0.00 0.00 2.24
93 94 8.367156 AGAGTAACATAACGTAACCCAAAGTAA 58.633 33.333 0.00 0.00 0.00 2.24
94 95 8.900983 AGTAACATAACGTAACCCAAAGTAAA 57.099 30.769 0.00 0.00 0.00 2.01
95 96 9.336171 AGTAACATAACGTAACCCAAAGTAAAA 57.664 29.630 0.00 0.00 0.00 1.52
98 99 8.393671 ACATAACGTAACCCAAAGTAAAATGA 57.606 30.769 0.00 0.00 0.00 2.57
99 100 8.508875 ACATAACGTAACCCAAAGTAAAATGAG 58.491 33.333 0.00 0.00 0.00 2.90
100 101 6.947644 AACGTAACCCAAAGTAAAATGAGT 57.052 33.333 0.00 0.00 0.00 3.41
101 102 6.549912 ACGTAACCCAAAGTAAAATGAGTC 57.450 37.500 0.00 0.00 0.00 3.36
102 103 6.293698 ACGTAACCCAAAGTAAAATGAGTCT 58.706 36.000 0.00 0.00 0.00 3.24
103 104 7.444299 ACGTAACCCAAAGTAAAATGAGTCTA 58.556 34.615 0.00 0.00 0.00 2.59
104 105 7.386025 ACGTAACCCAAAGTAAAATGAGTCTAC 59.614 37.037 0.00 0.00 0.00 2.59
105 106 7.385752 CGTAACCCAAAGTAAAATGAGTCTACA 59.614 37.037 0.00 0.00 0.00 2.74
106 107 9.059260 GTAACCCAAAGTAAAATGAGTCTACAA 57.941 33.333 0.00 0.00 0.00 2.41
107 108 8.706322 AACCCAAAGTAAAATGAGTCTACAAT 57.294 30.769 0.00 0.00 0.00 2.71
108 109 8.336801 ACCCAAAGTAAAATGAGTCTACAATC 57.663 34.615 0.00 0.00 0.00 2.67
109 110 8.164070 ACCCAAAGTAAAATGAGTCTACAATCT 58.836 33.333 0.00 0.00 0.00 2.40
110 111 9.667107 CCCAAAGTAAAATGAGTCTACAATCTA 57.333 33.333 0.00 0.00 0.00 1.98
206 207 8.554490 ACATCATAAATGTAGTACTTCCTCCT 57.446 34.615 0.00 0.00 0.00 3.69
219 220 5.230323 ACTTCCTCCTGTCCTTTTTACTC 57.770 43.478 0.00 0.00 0.00 2.59
221 222 2.565834 TCCTCCTGTCCTTTTTACTCCG 59.434 50.000 0.00 0.00 0.00 4.63
222 223 2.302157 CCTCCTGTCCTTTTTACTCCGT 59.698 50.000 0.00 0.00 0.00 4.69
229 230 6.312180 CCTGTCCTTTTTACTCCGTGTATTAC 59.688 42.308 0.00 0.00 0.00 1.89
243 244 6.483974 TCCGTGTATTACATTTGTGTCAAGTT 59.516 34.615 0.00 0.00 0.00 2.66
266 267 7.389053 AGTTAAACATTGCAAAGTTTGACCAAA 59.611 29.630 33.17 21.71 42.02 3.28
335 336 7.549842 CCAAGAATATTGATTTGGCATTGTGAA 59.450 33.333 9.01 0.00 34.28 3.18
341 342 4.316645 TGATTTGGCATTGTGAATGTTGG 58.683 39.130 0.00 0.00 41.01 3.77
344 345 4.944619 TTGGCATTGTGAATGTTGGTAA 57.055 36.364 0.00 0.00 41.01 2.85
429 431 9.400638 GATGACACTATTCTAATTTACTCTCCG 57.599 37.037 0.00 0.00 0.00 4.63
435 437 9.298250 ACTATTCTAATTTACTCTCCGCTATGA 57.702 33.333 0.00 0.00 0.00 2.15
469 471 3.328382 ACAAATAGCGACACAAGCCTA 57.672 42.857 0.00 0.00 34.64 3.93
490 492 1.124297 CGGACAACAACACGAATCTCG 59.876 52.381 0.00 0.00 46.93 4.04
493 495 1.784856 ACAACAACACGAATCTCGACG 59.215 47.619 2.59 0.00 43.74 5.12
550 552 4.508662 ACTAAAACTCAGCTAGCACATCC 58.491 43.478 18.83 0.00 0.00 3.51
564 566 6.758886 GCTAGCACATCCGCTTATTTATCTAT 59.241 38.462 10.63 0.00 43.56 1.98
617 788 1.134431 GGGGCCAAATCATGCGAATTT 60.134 47.619 4.39 0.00 0.00 1.82
620 791 2.418471 GGCCAAATCATGCGAATTTCCA 60.418 45.455 0.00 0.00 0.00 3.53
622 793 2.861935 CCAAATCATGCGAATTTCCAGC 59.138 45.455 0.00 0.00 0.00 4.85
643 814 4.219725 AGCACCAACAAACAAACTTGTACT 59.780 37.500 0.00 0.00 41.31 2.73
658 829 7.932120 AACTTGTACTACATCGATATGCTTC 57.068 36.000 0.00 0.00 36.50 3.86
713 884 5.890424 TTTCCCGCGAAAAAGAGATAAAT 57.110 34.783 8.23 0.00 35.02 1.40
714 885 6.988622 TTTCCCGCGAAAAAGAGATAAATA 57.011 33.333 8.23 0.00 35.02 1.40
762 933 2.479837 TCTAAATGCATAAGGTCGCCG 58.520 47.619 0.00 0.00 0.00 6.46
816 1860 2.219445 CACATATGACATCAACCGCTCG 59.781 50.000 10.38 0.00 0.00 5.03
832 1878 1.271102 GCTCGGTCAGTTGTCTCTTCT 59.729 52.381 0.00 0.00 0.00 2.85
847 1901 1.351017 TCTTCTTCCGATGGTTGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
945 2017 1.134521 TCGAGAAATAGCGTGCCCATT 60.135 47.619 0.00 0.00 0.00 3.16
979 2079 0.320421 TAGTGAACAAGTCGGCAGGC 60.320 55.000 0.00 0.00 0.00 4.85
1269 2391 3.200593 GCGCTCCTGCATCACCTG 61.201 66.667 0.00 0.00 39.64 4.00
1385 2525 3.074412 AGTTTCTGGACCAAATACAGCG 58.926 45.455 0.00 0.00 39.45 5.18
1404 2544 4.704833 AGTCACATGCCCGCGCTT 62.705 61.111 5.56 0.00 35.36 4.68
1517 2663 4.664677 GTGTGCGGTCTGCCTCGT 62.665 66.667 0.00 0.00 45.60 4.18
1536 2682 1.004891 GGAGGTGGAGAAGGGGGAT 59.995 63.158 0.00 0.00 0.00 3.85
1599 2745 3.071837 TGCATCGACCCGTGGCTA 61.072 61.111 0.00 0.00 0.00 3.93
1683 2841 1.167781 TATGAGCGACACCGGCGATA 61.168 55.000 9.30 0.00 36.06 2.92
1767 2942 0.889186 ATCTTGCGTCGTGGCCTTTT 60.889 50.000 3.32 0.00 0.00 2.27
1785 2963 4.703575 CCTTTTCTGAAGGCATCATCTTGA 59.296 41.667 0.00 0.00 37.44 3.02
1804 2982 3.774702 GTCGTCTTCGGTTGCGGC 61.775 66.667 0.00 0.00 37.69 6.53
1863 3041 1.194218 TCTGGATCAGATTGGTGCGA 58.806 50.000 0.00 0.00 35.39 5.10
1914 3092 5.461032 TTTGCTATTGGGTTTTGGTAGTG 57.539 39.130 0.00 0.00 0.00 2.74
1928 3106 2.092646 TGGTAGTGTGTGTTTTCCTGCT 60.093 45.455 0.00 0.00 0.00 4.24
1931 3109 1.134946 AGTGTGTGTTTTCCTGCTTGC 59.865 47.619 0.00 0.00 0.00 4.01
1935 3113 2.098614 TGTGTTTTCCTGCTTGCTCAA 58.901 42.857 0.00 0.00 0.00 3.02
1952 3130 1.923395 AAGGGATTCTCGTGCCCCA 60.923 57.895 0.00 0.00 43.08 4.96
1962 3140 0.618107 TCGTGCCCCACCCTATGTTA 60.618 55.000 0.00 0.00 0.00 2.41
1963 3141 0.472471 CGTGCCCCACCCTATGTTAT 59.528 55.000 0.00 0.00 0.00 1.89
1964 3142 1.813862 CGTGCCCCACCCTATGTTATG 60.814 57.143 0.00 0.00 0.00 1.90
1966 3144 1.145571 GCCCCACCCTATGTTATGGA 58.854 55.000 0.00 0.00 33.80 3.41
1967 3145 1.202891 GCCCCACCCTATGTTATGGAC 60.203 57.143 0.00 0.00 33.80 4.02
1968 3146 2.131854 CCCCACCCTATGTTATGGACA 58.868 52.381 0.00 0.00 43.71 4.02
1992 3170 8.739972 ACATATAGATGGGTTTCAACTTTCAAC 58.260 33.333 1.85 0.00 37.39 3.18
1993 3171 4.937201 AGATGGGTTTCAACTTTCAACC 57.063 40.909 0.00 0.00 39.51 3.77
1994 3172 4.546674 AGATGGGTTTCAACTTTCAACCT 58.453 39.130 0.00 0.00 40.04 3.50
1995 3173 4.584743 AGATGGGTTTCAACTTTCAACCTC 59.415 41.667 0.00 0.00 40.04 3.85
1996 3174 3.028130 TGGGTTTCAACTTTCAACCTCC 58.972 45.455 0.00 0.00 40.04 4.30
1997 3175 3.296854 GGGTTTCAACTTTCAACCTCCT 58.703 45.455 0.00 0.00 40.04 3.69
1999 3177 4.161565 GGGTTTCAACTTTCAACCTCCTTT 59.838 41.667 0.00 0.00 40.04 3.11
2001 3179 6.170506 GGTTTCAACTTTCAACCTCCTTTTT 58.829 36.000 0.00 0.00 37.56 1.94
2002 3180 7.324935 GGTTTCAACTTTCAACCTCCTTTTTA 58.675 34.615 0.00 0.00 37.56 1.52
2003 3181 7.491372 GGTTTCAACTTTCAACCTCCTTTTTAG 59.509 37.037 0.00 0.00 37.56 1.85
2004 3182 7.948034 TTCAACTTTCAACCTCCTTTTTAGA 57.052 32.000 0.00 0.00 0.00 2.10
2005 3183 7.948034 TCAACTTTCAACCTCCTTTTTAGAA 57.052 32.000 0.00 0.00 0.00 2.10
2041 6943 2.031360 GCAAGAGCATGATCAGGCC 58.969 57.895 27.42 18.64 39.20 5.19
2042 6944 0.465824 GCAAGAGCATGATCAGGCCT 60.466 55.000 27.42 20.45 39.20 5.19
2043 6945 2.022754 GCAAGAGCATGATCAGGCCTT 61.023 52.381 27.42 24.35 39.20 4.35
2044 6946 1.676529 CAAGAGCATGATCAGGCCTTG 59.323 52.381 30.61 30.61 39.20 3.61
2045 6947 0.917533 AGAGCATGATCAGGCCTTGT 59.082 50.000 27.42 10.19 39.20 3.16
2046 6948 2.121948 AGAGCATGATCAGGCCTTGTA 58.878 47.619 27.42 0.00 39.20 2.41
2047 6949 2.709934 AGAGCATGATCAGGCCTTGTAT 59.290 45.455 27.42 9.01 39.20 2.29
2048 6950 3.906218 AGAGCATGATCAGGCCTTGTATA 59.094 43.478 27.42 0.00 39.20 1.47
2049 6951 4.349048 AGAGCATGATCAGGCCTTGTATAA 59.651 41.667 27.42 0.00 39.20 0.98
2050 6952 5.013913 AGAGCATGATCAGGCCTTGTATAAT 59.986 40.000 27.42 6.70 39.20 1.28
2051 6953 5.008331 AGCATGATCAGGCCTTGTATAATG 58.992 41.667 27.42 7.49 39.20 1.90
2052 6954 4.157289 GCATGATCAGGCCTTGTATAATGG 59.843 45.833 21.41 0.00 30.94 3.16
2053 6955 4.371624 TGATCAGGCCTTGTATAATGGG 57.628 45.455 0.00 0.00 0.00 4.00
2054 6956 3.980022 TGATCAGGCCTTGTATAATGGGA 59.020 43.478 0.00 0.00 0.00 4.37
2055 6957 4.042062 TGATCAGGCCTTGTATAATGGGAG 59.958 45.833 0.00 0.00 0.00 4.30
2056 6958 3.664320 TCAGGCCTTGTATAATGGGAGA 58.336 45.455 0.00 0.00 0.00 3.71
2057 6959 4.242811 TCAGGCCTTGTATAATGGGAGAT 58.757 43.478 0.00 0.00 0.00 2.75
2058 6960 4.042062 TCAGGCCTTGTATAATGGGAGATG 59.958 45.833 0.00 0.00 0.00 2.90
2059 6961 3.084786 GGCCTTGTATAATGGGAGATGC 58.915 50.000 0.00 0.00 0.00 3.91
2060 6962 3.245052 GGCCTTGTATAATGGGAGATGCT 60.245 47.826 0.00 0.00 0.00 3.79
2061 6963 4.401925 GCCTTGTATAATGGGAGATGCTT 58.598 43.478 0.00 0.00 0.00 3.91
2062 6964 5.514834 GGCCTTGTATAATGGGAGATGCTTA 60.515 44.000 0.00 0.00 0.00 3.09
2063 6965 5.645497 GCCTTGTATAATGGGAGATGCTTAG 59.355 44.000 0.00 0.00 0.00 2.18
2064 6966 6.520742 GCCTTGTATAATGGGAGATGCTTAGA 60.521 42.308 0.00 0.00 0.00 2.10
2065 6967 7.453393 CCTTGTATAATGGGAGATGCTTAGAA 58.547 38.462 0.00 0.00 0.00 2.10
2066 6968 7.939039 CCTTGTATAATGGGAGATGCTTAGAAA 59.061 37.037 0.00 0.00 0.00 2.52
2067 6969 8.908786 TTGTATAATGGGAGATGCTTAGAAAG 57.091 34.615 0.00 0.00 0.00 2.62
2068 6970 8.262601 TGTATAATGGGAGATGCTTAGAAAGA 57.737 34.615 0.00 0.00 0.00 2.52
2069 6971 8.884323 TGTATAATGGGAGATGCTTAGAAAGAT 58.116 33.333 0.00 0.00 0.00 2.40
2070 6972 9.160496 GTATAATGGGAGATGCTTAGAAAGATG 57.840 37.037 0.00 0.00 0.00 2.90
2071 6973 5.643421 ATGGGAGATGCTTAGAAAGATGT 57.357 39.130 0.00 0.00 0.00 3.06
2072 6974 5.441718 TGGGAGATGCTTAGAAAGATGTT 57.558 39.130 0.00 0.00 0.00 2.71
2073 6975 5.819991 TGGGAGATGCTTAGAAAGATGTTT 58.180 37.500 0.00 0.00 0.00 2.83
2074 6976 6.957631 TGGGAGATGCTTAGAAAGATGTTTA 58.042 36.000 0.00 0.00 0.00 2.01
2075 6977 7.402054 TGGGAGATGCTTAGAAAGATGTTTAA 58.598 34.615 0.00 0.00 0.00 1.52
2076 6978 7.888021 TGGGAGATGCTTAGAAAGATGTTTAAA 59.112 33.333 0.00 0.00 0.00 1.52
2077 6979 8.739972 GGGAGATGCTTAGAAAGATGTTTAAAA 58.260 33.333 0.00 0.00 0.00 1.52
2121 7023 8.593492 AATTAACTGAATTTTTCTGAAGCACC 57.407 30.769 1.78 0.00 33.77 5.01
2122 7024 4.228912 ACTGAATTTTTCTGAAGCACCG 57.771 40.909 1.78 0.00 33.42 4.94
2123 7025 3.004734 ACTGAATTTTTCTGAAGCACCGG 59.995 43.478 0.00 0.00 33.42 5.28
2124 7026 2.955660 TGAATTTTTCTGAAGCACCGGT 59.044 40.909 0.00 0.00 0.00 5.28
2125 7027 3.243367 TGAATTTTTCTGAAGCACCGGTG 60.243 43.478 30.66 30.66 0.00 4.94
2137 7039 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
2138 7040 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
2139 7041 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
2140 7042 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
2141 7043 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
2142 7044 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
2143 7045 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
2144 7046 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
2145 7047 4.202172 GGTGCCTATTTCTACAGGAGAGAC 60.202 50.000 0.00 0.00 34.93 3.36
2146 7048 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
2147 7049 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
2148 7050 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
2149 7051 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
2150 7052 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
2151 7053 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
2152 7054 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
2153 7055 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
2154 7056 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
2155 7057 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
2156 7058 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
2157 7059 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
2180 7082 8.467402 AGCGTCTATCATGTATAAATAAGCAC 57.533 34.615 0.00 0.00 0.00 4.40
2181 7083 7.545965 AGCGTCTATCATGTATAAATAAGCACC 59.454 37.037 0.00 0.00 0.00 5.01
2182 7084 7.462856 GCGTCTATCATGTATAAATAAGCACCG 60.463 40.741 0.00 0.00 0.00 4.94
2183 7085 7.753580 CGTCTATCATGTATAAATAAGCACCGA 59.246 37.037 0.00 0.00 0.00 4.69
2184 7086 9.587772 GTCTATCATGTATAAATAAGCACCGAT 57.412 33.333 0.00 0.00 0.00 4.18
2185 7087 9.586435 TCTATCATGTATAAATAAGCACCGATG 57.414 33.333 0.00 0.00 0.00 3.84
2218 7120 9.578439 AAAAGCATGATTTATTTCTCTAAGCAC 57.422 29.630 9.74 0.00 0.00 4.40
2219 7121 7.269477 AGCATGATTTATTTCTCTAAGCACC 57.731 36.000 0.00 0.00 0.00 5.01
2220 7122 7.059156 AGCATGATTTATTTCTCTAAGCACCT 58.941 34.615 0.00 0.00 0.00 4.00
2221 7123 7.228308 AGCATGATTTATTTCTCTAAGCACCTC 59.772 37.037 0.00 0.00 0.00 3.85
2222 7124 7.521261 GCATGATTTATTTCTCTAAGCACCTCC 60.521 40.741 0.00 0.00 0.00 4.30
2223 7125 6.357367 TGATTTATTTCTCTAAGCACCTCCC 58.643 40.000 0.00 0.00 0.00 4.30
2224 7126 4.772886 TTATTTCTCTAAGCACCTCCCC 57.227 45.455 0.00 0.00 0.00 4.81
2225 7127 2.344093 TTTCTCTAAGCACCTCCCCT 57.656 50.000 0.00 0.00 0.00 4.79
2226 7128 3.484953 TTTCTCTAAGCACCTCCCCTA 57.515 47.619 0.00 0.00 0.00 3.53
2227 7129 3.484953 TTCTCTAAGCACCTCCCCTAA 57.515 47.619 0.00 0.00 0.00 2.69
2228 7130 3.033659 TCTCTAAGCACCTCCCCTAAG 57.966 52.381 0.00 0.00 0.00 2.18
2229 7131 1.414550 CTCTAAGCACCTCCCCTAAGC 59.585 57.143 0.00 0.00 0.00 3.09
2230 7132 1.204146 CTAAGCACCTCCCCTAAGCA 58.796 55.000 0.00 0.00 0.00 3.91
2231 7133 0.909623 TAAGCACCTCCCCTAAGCAC 59.090 55.000 0.00 0.00 0.00 4.40
2232 7134 1.853250 AAGCACCTCCCCTAAGCACC 61.853 60.000 0.00 0.00 0.00 5.01
2233 7135 2.301738 GCACCTCCCCTAAGCACCT 61.302 63.158 0.00 0.00 0.00 4.00
2234 7136 1.908483 CACCTCCCCTAAGCACCTC 59.092 63.158 0.00 0.00 0.00 3.85
2235 7137 1.307084 ACCTCCCCTAAGCACCTCC 60.307 63.158 0.00 0.00 0.00 4.30
2236 7138 2.073101 CCTCCCCTAAGCACCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
2237 7139 1.306997 CTCCCCTAAGCACCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
2238 7140 0.695803 CTCCCCTAAGCACCTCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
2239 7141 0.253630 TCCCCTAAGCACCTCCCATT 60.254 55.000 0.00 0.00 0.00 3.16
2240 7142 1.010294 TCCCCTAAGCACCTCCCATTA 59.990 52.381 0.00 0.00 0.00 1.90
2241 7143 2.065799 CCCCTAAGCACCTCCCATTAT 58.934 52.381 0.00 0.00 0.00 1.28
2242 7144 3.116120 TCCCCTAAGCACCTCCCATTATA 60.116 47.826 0.00 0.00 0.00 0.98
2243 7145 3.009143 CCCCTAAGCACCTCCCATTATAC 59.991 52.174 0.00 0.00 0.00 1.47
2244 7146 3.910627 CCCTAAGCACCTCCCATTATACT 59.089 47.826 0.00 0.00 0.00 2.12
2245 7147 5.091552 CCCTAAGCACCTCCCATTATACTA 58.908 45.833 0.00 0.00 0.00 1.82
2246 7148 5.187967 CCCTAAGCACCTCCCATTATACTAG 59.812 48.000 0.00 0.00 0.00 2.57
2247 7149 6.017192 CCTAAGCACCTCCCATTATACTAGA 58.983 44.000 0.00 0.00 0.00 2.43
2248 7150 6.497259 CCTAAGCACCTCCCATTATACTAGAA 59.503 42.308 0.00 0.00 0.00 2.10
2249 7151 5.810080 AGCACCTCCCATTATACTAGAAC 57.190 43.478 0.00 0.00 0.00 3.01
2250 7152 5.468658 AGCACCTCCCATTATACTAGAACT 58.531 41.667 0.00 0.00 0.00 3.01
2251 7153 5.540719 AGCACCTCCCATTATACTAGAACTC 59.459 44.000 0.00 0.00 0.00 3.01
2252 7154 5.304614 GCACCTCCCATTATACTAGAACTCA 59.695 44.000 0.00 0.00 0.00 3.41
2253 7155 6.183360 GCACCTCCCATTATACTAGAACTCAA 60.183 42.308 0.00 0.00 0.00 3.02
2264 7166 1.901591 AGAACTCAACGTAGGACCGA 58.098 50.000 0.00 0.00 0.00 4.69
2286 7188 3.233507 TGCTTTTCTCCAGCAATTTCCT 58.766 40.909 0.00 0.00 44.42 3.36
2297 7199 2.040544 AATTTCCTGCGCCCGAGTG 61.041 57.895 4.18 0.00 0.00 3.51
2318 7220 0.948678 GGGTTGTTTAGTCGCTTGCA 59.051 50.000 0.00 0.00 0.00 4.08
2366 7271 3.753272 GCTGTGTTGATGGTTGTCTATGT 59.247 43.478 0.00 0.00 0.00 2.29
2368 7273 4.967036 TGTGTTGATGGTTGTCTATGTGA 58.033 39.130 0.00 0.00 0.00 3.58
2383 7288 4.941873 TCTATGTGAAAGTCAGAGTCGCTA 59.058 41.667 0.00 0.00 0.00 4.26
2399 7304 1.810532 CTAGCTCGTGGAGGTGACC 59.189 63.158 7.54 0.00 40.75 4.02
2443 7348 4.279922 TCTCAAAGATTGTACTCGTGTGGA 59.720 41.667 0.00 0.00 0.00 4.02
2445 7350 6.152154 TCTCAAAGATTGTACTCGTGTGGATA 59.848 38.462 0.00 0.00 0.00 2.59
2446 7351 6.330278 TCAAAGATTGTACTCGTGTGGATAG 58.670 40.000 0.00 0.00 0.00 2.08
2449 7354 1.842052 TGTACTCGTGTGGATAGCCA 58.158 50.000 0.00 0.00 43.47 4.75
2464 7369 4.079446 CCATGTTGGCCGACTTGT 57.921 55.556 28.44 12.70 0.00 3.16
2465 7370 1.875963 CCATGTTGGCCGACTTGTC 59.124 57.895 28.44 4.64 0.00 3.18
2466 7371 0.606401 CCATGTTGGCCGACTTGTCT 60.606 55.000 28.44 7.37 0.00 3.41
2467 7372 1.238439 CATGTTGGCCGACTTGTCTT 58.762 50.000 24.66 2.98 0.00 3.01
2468 7373 1.069022 CATGTTGGCCGACTTGTCTTG 60.069 52.381 24.66 10.29 0.00 3.02
2469 7374 0.107410 TGTTGGCCGACTTGTCTTGT 60.107 50.000 23.87 0.00 0.00 3.16
2470 7375 0.586802 GTTGGCCGACTTGTCTTGTC 59.413 55.000 16.57 0.00 0.00 3.18
2471 7376 0.468226 TTGGCCGACTTGTCTTGTCT 59.532 50.000 0.00 0.00 32.70 3.41
2472 7377 1.334160 TGGCCGACTTGTCTTGTCTA 58.666 50.000 0.00 0.00 32.70 2.59
2473 7378 1.272490 TGGCCGACTTGTCTTGTCTAG 59.728 52.381 0.00 0.00 32.70 2.43
2474 7379 1.544691 GGCCGACTTGTCTTGTCTAGA 59.455 52.381 0.00 0.00 32.70 2.43
2515 7430 4.052608 TCGTTCAATCGAGCAACTTTACA 58.947 39.130 0.00 0.00 34.85 2.41
2517 7432 4.464112 GTTCAATCGAGCAACTTTACACC 58.536 43.478 0.00 0.00 0.00 4.16
2518 7433 4.002906 TCAATCGAGCAACTTTACACCT 57.997 40.909 0.00 0.00 0.00 4.00
2519 7434 4.385825 TCAATCGAGCAACTTTACACCTT 58.614 39.130 0.00 0.00 0.00 3.50
2615 7536 5.603170 ACAAAATTATGCATGAAGGAGGG 57.397 39.130 10.16 0.00 0.00 4.30
2616 7537 4.141869 ACAAAATTATGCATGAAGGAGGGC 60.142 41.667 10.16 0.00 0.00 5.19
2617 7538 1.901591 ATTATGCATGAAGGAGGGCG 58.098 50.000 10.16 0.00 0.00 6.13
2618 7539 0.836606 TTATGCATGAAGGAGGGCGA 59.163 50.000 10.16 0.00 0.00 5.54
2619 7540 0.106708 TATGCATGAAGGAGGGCGAC 59.893 55.000 10.16 0.00 0.00 5.19
2631 7552 2.349755 GGCGACCCTTGCTACCAA 59.650 61.111 0.00 0.00 0.00 3.67
2632 7553 2.038837 GGCGACCCTTGCTACCAAC 61.039 63.158 0.00 0.00 0.00 3.77
2633 7554 1.302192 GCGACCCTTGCTACCAACA 60.302 57.895 0.00 0.00 0.00 3.33
2634 7555 0.887387 GCGACCCTTGCTACCAACAA 60.887 55.000 0.00 0.00 0.00 2.83
2635 7556 1.600023 CGACCCTTGCTACCAACAAA 58.400 50.000 0.00 0.00 0.00 2.83
2636 7557 1.265905 CGACCCTTGCTACCAACAAAC 59.734 52.381 0.00 0.00 0.00 2.93
2637 7558 1.611977 GACCCTTGCTACCAACAAACC 59.388 52.381 0.00 0.00 0.00 3.27
2638 7559 0.596082 CCCTTGCTACCAACAAACCG 59.404 55.000 0.00 0.00 0.00 4.44
2639 7560 1.314730 CCTTGCTACCAACAAACCGT 58.685 50.000 0.00 0.00 0.00 4.83
2640 7561 1.001815 CCTTGCTACCAACAAACCGTG 60.002 52.381 0.00 0.00 0.00 4.94
2641 7562 0.382515 TTGCTACCAACAAACCGTGC 59.617 50.000 0.00 0.00 0.00 5.34
2642 7563 0.464735 TGCTACCAACAAACCGTGCT 60.465 50.000 0.00 0.00 0.00 4.40
2643 7564 1.202663 TGCTACCAACAAACCGTGCTA 60.203 47.619 0.00 0.00 0.00 3.49
2644 7565 1.196127 GCTACCAACAAACCGTGCTAC 59.804 52.381 0.00 0.00 0.00 3.58
2645 7566 2.485903 CTACCAACAAACCGTGCTACA 58.514 47.619 0.00 0.00 0.00 2.74
2646 7567 1.752683 ACCAACAAACCGTGCTACAA 58.247 45.000 0.00 0.00 0.00 2.41
2647 7568 1.673920 ACCAACAAACCGTGCTACAAG 59.326 47.619 0.00 0.00 0.00 3.16
2648 7569 1.599419 CCAACAAACCGTGCTACAAGC 60.599 52.381 0.00 0.00 42.82 4.01
2649 7570 0.666374 AACAAACCGTGCTACAAGCC 59.334 50.000 0.00 0.00 41.51 4.35
2650 7571 1.206578 CAAACCGTGCTACAAGCCG 59.793 57.895 0.00 0.22 41.51 5.52
2651 7572 1.227734 AAACCGTGCTACAAGCCGT 60.228 52.632 0.00 0.00 41.51 5.68
2652 7573 0.816421 AAACCGTGCTACAAGCCGTT 60.816 50.000 0.00 0.00 41.51 4.44
2653 7574 1.226030 AACCGTGCTACAAGCCGTTC 61.226 55.000 0.00 0.00 41.51 3.95
2654 7575 2.726691 CCGTGCTACAAGCCGTTCG 61.727 63.158 0.00 0.00 41.51 3.95
2655 7576 2.726691 CGTGCTACAAGCCGTTCGG 61.727 63.158 6.90 6.90 41.51 4.30
2656 7577 2.047655 TGCTACAAGCCGTTCGGG 60.048 61.111 13.16 0.00 41.51 5.14
2666 7587 1.929376 CCGTTCGGGCGTAATTAGC 59.071 57.895 3.04 0.00 0.00 3.09
2667 7588 0.806884 CCGTTCGGGCGTAATTAGCA 60.807 55.000 3.04 0.00 36.08 3.49
2668 7589 1.000884 CGTTCGGGCGTAATTAGCAA 58.999 50.000 8.51 0.00 36.08 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.336809 GATAGAGAGCCACGCCGG 59.663 66.667 0.00 0.00 38.11 6.13
1 2 2.050895 CGATAGAGAGCCACGCCG 60.051 66.667 0.00 0.00 39.76 6.46
2 3 3.433319 TCGATAGAGAGCCACGCC 58.567 61.111 0.00 0.00 42.67 5.68
12 13 6.586463 CACTTAAGCAAACTTGTCTCGATAGA 59.414 38.462 1.29 0.00 38.96 1.98
13 14 6.586463 TCACTTAAGCAAACTTGTCTCGATAG 59.414 38.462 1.29 0.00 36.57 2.08
14 15 6.365247 GTCACTTAAGCAAACTTGTCTCGATA 59.635 38.462 1.29 0.00 36.57 2.92
15 16 5.177696 GTCACTTAAGCAAACTTGTCTCGAT 59.822 40.000 1.29 0.00 36.57 3.59
16 17 4.506654 GTCACTTAAGCAAACTTGTCTCGA 59.493 41.667 1.29 0.00 36.57 4.04
17 18 4.270084 TGTCACTTAAGCAAACTTGTCTCG 59.730 41.667 1.29 0.00 36.57 4.04
18 19 5.734855 TGTCACTTAAGCAAACTTGTCTC 57.265 39.130 1.29 0.00 36.57 3.36
19 20 5.590259 ACATGTCACTTAAGCAAACTTGTCT 59.410 36.000 1.29 0.00 36.57 3.41
20 21 5.821204 ACATGTCACTTAAGCAAACTTGTC 58.179 37.500 1.29 0.00 36.57 3.18
21 22 5.835113 ACATGTCACTTAAGCAAACTTGT 57.165 34.783 1.29 9.62 36.57 3.16
22 23 6.959361 ACTACATGTCACTTAAGCAAACTTG 58.041 36.000 0.00 9.05 36.57 3.16
23 24 7.568199 AACTACATGTCACTTAAGCAAACTT 57.432 32.000 0.00 0.00 40.07 2.66
24 25 8.671384 TTAACTACATGTCACTTAAGCAAACT 57.329 30.769 0.00 0.00 0.00 2.66
25 26 9.329913 CATTAACTACATGTCACTTAAGCAAAC 57.670 33.333 0.00 0.00 0.00 2.93
26 27 9.278978 TCATTAACTACATGTCACTTAAGCAAA 57.721 29.630 0.00 0.00 0.00 3.68
27 28 8.840833 TCATTAACTACATGTCACTTAAGCAA 57.159 30.769 0.00 0.00 0.00 3.91
28 29 7.549134 CCTCATTAACTACATGTCACTTAAGCA 59.451 37.037 0.00 0.00 0.00 3.91
29 30 7.764443 TCCTCATTAACTACATGTCACTTAAGC 59.236 37.037 0.00 0.00 0.00 3.09
30 31 9.307121 CTCCTCATTAACTACATGTCACTTAAG 57.693 37.037 0.00 0.00 0.00 1.85
31 32 9.031537 TCTCCTCATTAACTACATGTCACTTAA 57.968 33.333 0.00 3.41 0.00 1.85
32 33 8.589701 TCTCCTCATTAACTACATGTCACTTA 57.410 34.615 0.00 0.00 0.00 2.24
33 34 7.364232 CCTCTCCTCATTAACTACATGTCACTT 60.364 40.741 0.00 0.00 0.00 3.16
34 35 6.097554 CCTCTCCTCATTAACTACATGTCACT 59.902 42.308 0.00 0.00 0.00 3.41
35 36 6.276847 CCTCTCCTCATTAACTACATGTCAC 58.723 44.000 0.00 0.00 0.00 3.67
36 37 5.363868 CCCTCTCCTCATTAACTACATGTCA 59.636 44.000 0.00 0.00 0.00 3.58
37 38 5.221541 CCCCTCTCCTCATTAACTACATGTC 60.222 48.000 0.00 0.00 0.00 3.06
38 39 4.656112 CCCCTCTCCTCATTAACTACATGT 59.344 45.833 2.69 2.69 0.00 3.21
39 40 4.656112 ACCCCTCTCCTCATTAACTACATG 59.344 45.833 0.00 0.00 0.00 3.21
40 41 4.656112 CACCCCTCTCCTCATTAACTACAT 59.344 45.833 0.00 0.00 0.00 2.29
41 42 4.030913 CACCCCTCTCCTCATTAACTACA 58.969 47.826 0.00 0.00 0.00 2.74
42 43 4.031611 ACACCCCTCTCCTCATTAACTAC 58.968 47.826 0.00 0.00 0.00 2.73
43 44 4.348020 ACACCCCTCTCCTCATTAACTA 57.652 45.455 0.00 0.00 0.00 2.24
44 45 3.207044 ACACCCCTCTCCTCATTAACT 57.793 47.619 0.00 0.00 0.00 2.24
45 46 4.302559 AAACACCCCTCTCCTCATTAAC 57.697 45.455 0.00 0.00 0.00 2.01
46 47 5.347124 TCTAAACACCCCTCTCCTCATTAA 58.653 41.667 0.00 0.00 0.00 1.40
47 48 4.955335 TCTAAACACCCCTCTCCTCATTA 58.045 43.478 0.00 0.00 0.00 1.90
48 49 3.777522 CTCTAAACACCCCTCTCCTCATT 59.222 47.826 0.00 0.00 0.00 2.57
49 50 3.246167 ACTCTAAACACCCCTCTCCTCAT 60.246 47.826 0.00 0.00 0.00 2.90
50 51 2.111972 ACTCTAAACACCCCTCTCCTCA 59.888 50.000 0.00 0.00 0.00 3.86
51 52 2.822697 ACTCTAAACACCCCTCTCCTC 58.177 52.381 0.00 0.00 0.00 3.71
52 53 4.095211 GTTACTCTAAACACCCCTCTCCT 58.905 47.826 0.00 0.00 0.00 3.69
53 54 3.836562 TGTTACTCTAAACACCCCTCTCC 59.163 47.826 0.00 0.00 34.50 3.71
54 55 5.678955 ATGTTACTCTAAACACCCCTCTC 57.321 43.478 0.00 0.00 41.89 3.20
55 56 6.350780 CGTTATGTTACTCTAAACACCCCTCT 60.351 42.308 0.00 0.00 41.89 3.69
56 57 5.809051 CGTTATGTTACTCTAAACACCCCTC 59.191 44.000 0.00 0.00 41.89 4.30
57 58 5.246883 ACGTTATGTTACTCTAAACACCCCT 59.753 40.000 0.00 0.00 41.89 4.79
58 59 5.482006 ACGTTATGTTACTCTAAACACCCC 58.518 41.667 0.00 0.00 41.89 4.95
59 60 7.063426 GGTTACGTTATGTTACTCTAAACACCC 59.937 40.741 0.00 0.00 41.89 4.61
60 61 7.063426 GGGTTACGTTATGTTACTCTAAACACC 59.937 40.741 0.00 0.00 41.89 4.16
61 62 7.598493 TGGGTTACGTTATGTTACTCTAAACAC 59.402 37.037 0.00 0.00 41.89 3.32
62 63 7.665690 TGGGTTACGTTATGTTACTCTAAACA 58.334 34.615 0.00 0.00 43.16 2.83
63 64 8.532977 TTGGGTTACGTTATGTTACTCTAAAC 57.467 34.615 0.00 0.00 31.81 2.01
64 65 9.206870 CTTTGGGTTACGTTATGTTACTCTAAA 57.793 33.333 0.00 0.00 31.81 1.85
65 66 8.367156 ACTTTGGGTTACGTTATGTTACTCTAA 58.633 33.333 0.00 0.00 31.81 2.10
66 67 7.895759 ACTTTGGGTTACGTTATGTTACTCTA 58.104 34.615 0.00 0.00 31.81 2.43
67 68 6.762333 ACTTTGGGTTACGTTATGTTACTCT 58.238 36.000 0.00 0.00 31.81 3.24
68 69 8.532977 TTACTTTGGGTTACGTTATGTTACTC 57.467 34.615 0.00 0.00 31.17 2.59
69 70 8.900983 TTTACTTTGGGTTACGTTATGTTACT 57.099 30.769 0.00 0.00 30.92 2.24
72 73 8.848182 TCATTTTACTTTGGGTTACGTTATGTT 58.152 29.630 0.00 0.00 0.00 2.71
73 74 8.393671 TCATTTTACTTTGGGTTACGTTATGT 57.606 30.769 0.00 0.00 0.00 2.29
74 75 8.508875 ACTCATTTTACTTTGGGTTACGTTATG 58.491 33.333 0.00 0.00 0.00 1.90
75 76 8.625786 ACTCATTTTACTTTGGGTTACGTTAT 57.374 30.769 0.00 0.00 0.00 1.89
76 77 7.933033 AGACTCATTTTACTTTGGGTTACGTTA 59.067 33.333 0.00 0.00 0.00 3.18
77 78 6.769341 AGACTCATTTTACTTTGGGTTACGTT 59.231 34.615 0.00 0.00 0.00 3.99
78 79 6.293698 AGACTCATTTTACTTTGGGTTACGT 58.706 36.000 0.00 0.00 0.00 3.57
79 80 6.796705 AGACTCATTTTACTTTGGGTTACG 57.203 37.500 0.00 0.00 0.00 3.18
80 81 8.611654 TGTAGACTCATTTTACTTTGGGTTAC 57.388 34.615 0.00 0.00 0.00 2.50
81 82 9.802039 ATTGTAGACTCATTTTACTTTGGGTTA 57.198 29.630 0.00 0.00 0.00 2.85
82 83 8.706322 ATTGTAGACTCATTTTACTTTGGGTT 57.294 30.769 0.00 0.00 0.00 4.11
83 84 8.164070 AGATTGTAGACTCATTTTACTTTGGGT 58.836 33.333 0.00 0.00 0.00 4.51
84 85 8.567285 AGATTGTAGACTCATTTTACTTTGGG 57.433 34.615 0.00 0.00 0.00 4.12
141 142 8.044908 AGTAGGATAATAGAGTTTCCGCAAAAA 58.955 33.333 0.00 0.00 33.35 1.94
142 143 7.562135 AGTAGGATAATAGAGTTTCCGCAAAA 58.438 34.615 0.00 0.00 33.35 2.44
143 144 7.120923 AGTAGGATAATAGAGTTTCCGCAAA 57.879 36.000 0.00 0.00 33.35 3.68
144 145 6.726490 AGTAGGATAATAGAGTTTCCGCAA 57.274 37.500 0.00 0.00 33.35 4.85
145 146 6.550108 AGAAGTAGGATAATAGAGTTTCCGCA 59.450 38.462 0.00 0.00 33.35 5.69
146 147 6.983984 AGAAGTAGGATAATAGAGTTTCCGC 58.016 40.000 0.00 0.00 33.35 5.54
191 192 4.399483 AAGGACAGGAGGAAGTACTACA 57.601 45.455 0.00 0.00 0.00 2.74
198 199 4.580868 GGAGTAAAAAGGACAGGAGGAAG 58.419 47.826 0.00 0.00 0.00 3.46
200 201 2.565834 CGGAGTAAAAAGGACAGGAGGA 59.434 50.000 0.00 0.00 0.00 3.71
201 202 2.302157 ACGGAGTAAAAAGGACAGGAGG 59.698 50.000 0.00 0.00 41.94 4.30
204 205 3.121738 ACACGGAGTAAAAAGGACAGG 57.878 47.619 0.00 0.00 41.61 4.00
206 207 6.757237 TGTAATACACGGAGTAAAAAGGACA 58.243 36.000 0.00 0.00 41.61 4.02
219 220 6.236017 ACTTGACACAAATGTAATACACGG 57.764 37.500 0.00 0.00 39.95 4.94
229 230 7.231705 TGCAATGTTTAACTTGACACAAATG 57.768 32.000 10.03 0.00 0.00 2.32
243 244 7.856145 ATTTGGTCAAACTTTGCAATGTTTA 57.144 28.000 31.27 20.53 35.37 2.01
304 305 7.421087 TGCCAAATCAATATTCTTGGATTCA 57.579 32.000 18.45 8.73 28.11 2.57
310 311 8.481974 TTCACAATGCCAAATCAATATTCTTG 57.518 30.769 0.00 0.00 0.00 3.02
313 314 8.428186 ACATTCACAATGCCAAATCAATATTC 57.572 30.769 0.00 0.00 42.69 1.75
317 318 5.413213 CCAACATTCACAATGCCAAATCAAT 59.587 36.000 0.00 0.00 42.69 2.57
403 405 9.400638 CGGAGAGTAAATTAGAATAGTGTCATC 57.599 37.037 0.00 0.00 0.00 2.92
435 437 4.510340 CGCTATTTGTTCGGTTAGGCTAAT 59.490 41.667 10.65 0.00 0.00 1.73
469 471 2.132762 GAGATTCGTGTTGTTGTCCGT 58.867 47.619 0.00 0.00 0.00 4.69
564 566 7.789273 TCTATCAGTGTTCCAAAACGTAAAA 57.211 32.000 0.00 0.00 38.28 1.52
617 788 2.175202 AGTTTGTTTGTTGGTGCTGGA 58.825 42.857 0.00 0.00 0.00 3.86
620 791 3.676291 ACAAGTTTGTTTGTTGGTGCT 57.324 38.095 0.00 0.00 38.05 4.40
622 793 6.613233 TGTAGTACAAGTTTGTTTGTTGGTG 58.387 36.000 0.00 0.00 41.31 4.17
666 837 3.789756 CGCGATCGATGTAGTACAAGTTT 59.210 43.478 21.57 0.00 38.10 2.66
667 838 3.064408 TCGCGATCGATGTAGTACAAGTT 59.936 43.478 21.57 0.13 40.21 2.66
668 839 2.610833 TCGCGATCGATGTAGTACAAGT 59.389 45.455 21.57 0.00 40.21 3.16
750 921 1.850441 CGTTTCTACGGCGACCTTATG 59.150 52.381 16.62 0.00 43.94 1.90
762 933 0.739813 ATGGTCGGCAGCGTTTCTAC 60.740 55.000 0.00 0.00 0.00 2.59
816 1860 2.296471 TCGGAAGAAGAGACAACTGACC 59.704 50.000 0.00 0.00 37.03 4.02
832 1878 0.958091 CAACAAGCCAACCATCGGAA 59.042 50.000 0.00 0.00 0.00 4.30
847 1901 1.864711 GTACAGACGAAGCAAGCAACA 59.135 47.619 0.00 0.00 0.00 3.33
920 1992 2.473235 GGCACGCTATTTCTCGAGAATC 59.527 50.000 27.51 15.57 33.54 2.52
945 2017 1.350684 TCACTAGCAATTCACTGGCCA 59.649 47.619 4.71 4.71 0.00 5.36
979 2079 3.649277 CTTCCCGTGCCTCTGACCG 62.649 68.421 0.00 0.00 0.00 4.79
1356 2493 2.032528 TCCAGAAACTGCGGCAGG 59.967 61.111 31.38 15.39 35.51 4.85
1517 2663 1.837533 ATCCCCCTTCTCCACCTCCA 61.838 60.000 0.00 0.00 0.00 3.86
1536 2682 4.752879 GGCAGCCGCTTCACCGTA 62.753 66.667 0.00 0.00 38.60 4.02
1599 2745 2.027605 CACGTGGAGTGCTCGTGT 59.972 61.111 25.13 0.00 46.11 4.49
1767 2942 4.511527 GACTTCAAGATGATGCCTTCAGA 58.488 43.478 0.00 0.00 37.89 3.27
1785 2963 1.663702 CCGCAACCGAAGACGACTT 60.664 57.895 0.00 0.00 42.66 3.01
1804 2982 3.200522 GGCAGGAATTGGCGGAAG 58.799 61.111 0.00 0.00 42.97 3.46
1813 2991 2.597340 CATCCCCACGGCAGGAAT 59.403 61.111 0.00 0.00 35.30 3.01
1832 3010 0.661780 GATCCAGATTCGCCGTCTCG 60.662 60.000 0.00 0.00 0.00 4.04
1863 3041 0.035458 CTTGGAGCCGAACAAGAGGT 59.965 55.000 0.00 0.00 45.22 3.85
1914 3092 1.405105 TGAGCAAGCAGGAAAACACAC 59.595 47.619 0.00 0.00 0.00 3.82
1928 3106 1.945819 GCACGAGAATCCCTTGAGCAA 60.946 52.381 0.00 0.00 41.01 3.91
1931 3109 0.462759 GGGCACGAGAATCCCTTGAG 60.463 60.000 0.00 0.00 37.08 3.02
1935 3113 2.285368 TGGGGCACGAGAATCCCT 60.285 61.111 0.00 0.00 40.05 4.20
1962 3140 7.154191 AGTTGAAACCCATCTATATGTCCAT 57.846 36.000 0.00 0.00 0.00 3.41
1963 3141 6.575244 AGTTGAAACCCATCTATATGTCCA 57.425 37.500 0.00 0.00 0.00 4.02
1964 3142 7.556275 TGAAAGTTGAAACCCATCTATATGTCC 59.444 37.037 0.00 0.00 0.00 4.02
1966 3144 8.739972 GTTGAAAGTTGAAACCCATCTATATGT 58.260 33.333 0.00 0.00 0.00 2.29
1967 3145 8.190784 GGTTGAAAGTTGAAACCCATCTATATG 58.809 37.037 8.24 0.00 37.90 1.78
1968 3146 8.116026 AGGTTGAAAGTTGAAACCCATCTATAT 58.884 33.333 13.73 0.00 43.67 0.86
1969 3147 7.466804 AGGTTGAAAGTTGAAACCCATCTATA 58.533 34.615 13.73 0.00 43.67 1.31
1973 3151 4.262036 GGAGGTTGAAAGTTGAAACCCATC 60.262 45.833 13.73 7.92 43.67 3.51
2005 3183 3.951775 TGCAACTCAACACCACTTTTT 57.048 38.095 0.00 0.00 0.00 1.94
2010 6912 1.268743 GCTCTTGCAACTCAACACCAC 60.269 52.381 0.00 0.00 39.41 4.16
2011 6913 1.024271 GCTCTTGCAACTCAACACCA 58.976 50.000 0.00 0.00 39.41 4.17
2039 6941 4.026356 AGCATCTCCCATTATACAAGGC 57.974 45.455 0.00 0.00 0.00 4.35
2040 6942 7.009179 TCTAAGCATCTCCCATTATACAAGG 57.991 40.000 0.00 0.00 0.00 3.61
2041 6943 8.908786 TTTCTAAGCATCTCCCATTATACAAG 57.091 34.615 0.00 0.00 0.00 3.16
2042 6944 8.713971 TCTTTCTAAGCATCTCCCATTATACAA 58.286 33.333 0.00 0.00 0.00 2.41
2043 6945 8.262601 TCTTTCTAAGCATCTCCCATTATACA 57.737 34.615 0.00 0.00 0.00 2.29
2044 6946 9.160496 CATCTTTCTAAGCATCTCCCATTATAC 57.840 37.037 0.00 0.00 0.00 1.47
2045 6947 8.884323 ACATCTTTCTAAGCATCTCCCATTATA 58.116 33.333 0.00 0.00 0.00 0.98
2046 6948 7.753630 ACATCTTTCTAAGCATCTCCCATTAT 58.246 34.615 0.00 0.00 0.00 1.28
2047 6949 7.141758 ACATCTTTCTAAGCATCTCCCATTA 57.858 36.000 0.00 0.00 0.00 1.90
2048 6950 6.011122 ACATCTTTCTAAGCATCTCCCATT 57.989 37.500 0.00 0.00 0.00 3.16
2049 6951 5.643421 ACATCTTTCTAAGCATCTCCCAT 57.357 39.130 0.00 0.00 0.00 4.00
2050 6952 5.441718 AACATCTTTCTAAGCATCTCCCA 57.558 39.130 0.00 0.00 0.00 4.37
2051 6953 7.865706 TTAAACATCTTTCTAAGCATCTCCC 57.134 36.000 0.00 0.00 0.00 4.30
2096 6998 7.382218 CGGTGCTTCAGAAAAATTCAGTTAATT 59.618 33.333 0.00 0.00 39.56 1.40
2097 6999 6.863126 CGGTGCTTCAGAAAAATTCAGTTAAT 59.137 34.615 0.00 0.00 0.00 1.40
2098 7000 6.205784 CGGTGCTTCAGAAAAATTCAGTTAA 58.794 36.000 0.00 0.00 0.00 2.01
2099 7001 5.278266 CCGGTGCTTCAGAAAAATTCAGTTA 60.278 40.000 0.00 0.00 0.00 2.24
2100 7002 4.499696 CCGGTGCTTCAGAAAAATTCAGTT 60.500 41.667 0.00 0.00 0.00 3.16
2101 7003 3.004734 CCGGTGCTTCAGAAAAATTCAGT 59.995 43.478 0.00 0.00 0.00 3.41
2102 7004 3.004734 ACCGGTGCTTCAGAAAAATTCAG 59.995 43.478 6.12 0.00 0.00 3.02
2103 7005 2.955660 ACCGGTGCTTCAGAAAAATTCA 59.044 40.909 6.12 0.00 0.00 2.57
2104 7006 3.308530 CACCGGTGCTTCAGAAAAATTC 58.691 45.455 24.02 0.00 0.00 2.17
2105 7007 3.369546 CACCGGTGCTTCAGAAAAATT 57.630 42.857 24.02 0.00 0.00 1.82
2118 7020 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
2119 7021 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
2120 7022 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
2121 7023 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
2122 7024 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
2123 7025 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
2124 7026 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
2125 7027 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
2126 7028 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
2127 7029 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
2128 7030 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
2129 7031 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
2130 7032 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
2131 7033 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
2132 7034 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
2133 7035 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
2134 7036 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
2135 7037 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
2154 7056 8.926710 GTGCTTATTTATACATGATAGACGCTT 58.073 33.333 0.00 0.00 0.00 4.68
2155 7057 7.545965 GGTGCTTATTTATACATGATAGACGCT 59.454 37.037 0.00 0.00 0.00 5.07
2156 7058 7.462856 CGGTGCTTATTTATACATGATAGACGC 60.463 40.741 0.00 0.00 0.00 5.19
2157 7059 7.753580 TCGGTGCTTATTTATACATGATAGACG 59.246 37.037 0.00 0.00 0.00 4.18
2158 7060 8.981724 TCGGTGCTTATTTATACATGATAGAC 57.018 34.615 0.00 0.00 0.00 2.59
2159 7061 9.586435 CATCGGTGCTTATTTATACATGATAGA 57.414 33.333 0.00 0.00 0.00 1.98
2192 7094 9.578439 GTGCTTAGAGAAATAAATCATGCTTTT 57.422 29.630 0.00 0.00 0.00 2.27
2193 7095 8.193438 GGTGCTTAGAGAAATAAATCATGCTTT 58.807 33.333 0.00 0.00 0.00 3.51
2194 7096 7.559170 AGGTGCTTAGAGAAATAAATCATGCTT 59.441 33.333 0.00 0.00 0.00 3.91
2195 7097 7.059156 AGGTGCTTAGAGAAATAAATCATGCT 58.941 34.615 0.00 0.00 0.00 3.79
2196 7098 7.269477 AGGTGCTTAGAGAAATAAATCATGC 57.731 36.000 0.00 0.00 0.00 4.06
2197 7099 7.040823 GGGAGGTGCTTAGAGAAATAAATCATG 60.041 40.741 0.00 0.00 0.00 3.07
2198 7100 7.001073 GGGAGGTGCTTAGAGAAATAAATCAT 58.999 38.462 0.00 0.00 0.00 2.45
2199 7101 6.357367 GGGAGGTGCTTAGAGAAATAAATCA 58.643 40.000 0.00 0.00 0.00 2.57
2200 7102 5.765677 GGGGAGGTGCTTAGAGAAATAAATC 59.234 44.000 0.00 0.00 0.00 2.17
2201 7103 5.433381 AGGGGAGGTGCTTAGAGAAATAAAT 59.567 40.000 0.00 0.00 0.00 1.40
2202 7104 4.788617 AGGGGAGGTGCTTAGAGAAATAAA 59.211 41.667 0.00 0.00 0.00 1.40
2203 7105 4.371681 AGGGGAGGTGCTTAGAGAAATAA 58.628 43.478 0.00 0.00 0.00 1.40
2204 7106 4.008916 AGGGGAGGTGCTTAGAGAAATA 57.991 45.455 0.00 0.00 0.00 1.40
2205 7107 2.852130 AGGGGAGGTGCTTAGAGAAAT 58.148 47.619 0.00 0.00 0.00 2.17
2206 7108 2.344093 AGGGGAGGTGCTTAGAGAAA 57.656 50.000 0.00 0.00 0.00 2.52
2207 7109 3.375699 CTTAGGGGAGGTGCTTAGAGAA 58.624 50.000 0.00 0.00 0.00 2.87
2208 7110 2.955461 GCTTAGGGGAGGTGCTTAGAGA 60.955 54.545 0.00 0.00 0.00 3.10
2209 7111 1.414550 GCTTAGGGGAGGTGCTTAGAG 59.585 57.143 0.00 0.00 0.00 2.43
2210 7112 1.273609 TGCTTAGGGGAGGTGCTTAGA 60.274 52.381 0.00 0.00 0.00 2.10
2211 7113 1.134371 GTGCTTAGGGGAGGTGCTTAG 60.134 57.143 0.00 0.00 0.00 2.18
2212 7114 0.909623 GTGCTTAGGGGAGGTGCTTA 59.090 55.000 0.00 0.00 0.00 3.09
2213 7115 1.685820 GTGCTTAGGGGAGGTGCTT 59.314 57.895 0.00 0.00 0.00 3.91
2214 7116 2.301738 GGTGCTTAGGGGAGGTGCT 61.302 63.158 0.00 0.00 0.00 4.40
2215 7117 2.258748 GAGGTGCTTAGGGGAGGTGC 62.259 65.000 0.00 0.00 0.00 5.01
2216 7118 1.627297 GGAGGTGCTTAGGGGAGGTG 61.627 65.000 0.00 0.00 0.00 4.00
2217 7119 1.307084 GGAGGTGCTTAGGGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
2218 7120 2.073101 GGGAGGTGCTTAGGGGAGG 61.073 68.421 0.00 0.00 0.00 4.30
2219 7121 0.695803 ATGGGAGGTGCTTAGGGGAG 60.696 60.000 0.00 0.00 0.00 4.30
2220 7122 0.253630 AATGGGAGGTGCTTAGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
2221 7123 1.518367 TAATGGGAGGTGCTTAGGGG 58.482 55.000 0.00 0.00 0.00 4.79
2222 7124 3.910627 AGTATAATGGGAGGTGCTTAGGG 59.089 47.826 0.00 0.00 0.00 3.53
2223 7125 6.017192 TCTAGTATAATGGGAGGTGCTTAGG 58.983 44.000 0.00 0.00 0.00 2.69
2224 7126 7.233757 AGTTCTAGTATAATGGGAGGTGCTTAG 59.766 40.741 0.00 0.00 0.00 2.18
2225 7127 7.073854 AGTTCTAGTATAATGGGAGGTGCTTA 58.926 38.462 0.00 0.00 0.00 3.09
2226 7128 5.905913 AGTTCTAGTATAATGGGAGGTGCTT 59.094 40.000 0.00 0.00 0.00 3.91
2227 7129 5.468658 AGTTCTAGTATAATGGGAGGTGCT 58.531 41.667 0.00 0.00 0.00 4.40
2228 7130 5.304614 TGAGTTCTAGTATAATGGGAGGTGC 59.695 44.000 0.00 0.00 0.00 5.01
2229 7131 6.978674 TGAGTTCTAGTATAATGGGAGGTG 57.021 41.667 0.00 0.00 0.00 4.00
2230 7132 6.040616 CGTTGAGTTCTAGTATAATGGGAGGT 59.959 42.308 0.00 0.00 0.00 3.85
2231 7133 6.040616 ACGTTGAGTTCTAGTATAATGGGAGG 59.959 42.308 0.00 0.00 0.00 4.30
2232 7134 7.040473 ACGTTGAGTTCTAGTATAATGGGAG 57.960 40.000 0.00 0.00 0.00 4.30
2233 7135 7.230108 CCTACGTTGAGTTCTAGTATAATGGGA 59.770 40.741 0.00 0.00 0.00 4.37
2234 7136 7.230108 TCCTACGTTGAGTTCTAGTATAATGGG 59.770 40.741 0.00 0.00 0.00 4.00
2235 7137 8.074972 GTCCTACGTTGAGTTCTAGTATAATGG 58.925 40.741 0.00 0.00 0.00 3.16
2236 7138 8.074972 GGTCCTACGTTGAGTTCTAGTATAATG 58.925 40.741 0.00 0.00 0.00 1.90
2237 7139 7.041508 CGGTCCTACGTTGAGTTCTAGTATAAT 60.042 40.741 0.00 0.00 0.00 1.28
2238 7140 6.258727 CGGTCCTACGTTGAGTTCTAGTATAA 59.741 42.308 0.00 0.00 0.00 0.98
2239 7141 5.755375 CGGTCCTACGTTGAGTTCTAGTATA 59.245 44.000 0.00 0.00 0.00 1.47
2240 7142 4.574013 CGGTCCTACGTTGAGTTCTAGTAT 59.426 45.833 0.00 0.00 0.00 2.12
2241 7143 3.935203 CGGTCCTACGTTGAGTTCTAGTA 59.065 47.826 0.00 0.00 0.00 1.82
2242 7144 2.746362 CGGTCCTACGTTGAGTTCTAGT 59.254 50.000 0.00 0.00 0.00 2.57
2243 7145 3.005554 TCGGTCCTACGTTGAGTTCTAG 58.994 50.000 0.00 0.00 34.94 2.43
2244 7146 3.057969 TCGGTCCTACGTTGAGTTCTA 57.942 47.619 0.00 0.00 34.94 2.10
2245 7147 1.901591 TCGGTCCTACGTTGAGTTCT 58.098 50.000 0.00 0.00 34.94 3.01
2246 7148 2.527100 CATCGGTCCTACGTTGAGTTC 58.473 52.381 0.00 0.00 36.05 3.01
2247 7149 1.403780 GCATCGGTCCTACGTTGAGTT 60.404 52.381 0.00 0.00 36.05 3.01
2248 7150 0.172803 GCATCGGTCCTACGTTGAGT 59.827 55.000 0.00 0.00 36.05 3.41
2249 7151 0.456221 AGCATCGGTCCTACGTTGAG 59.544 55.000 0.00 0.00 36.05 3.02
2250 7152 0.892755 AAGCATCGGTCCTACGTTGA 59.107 50.000 0.00 0.00 36.05 3.18
2251 7153 1.722011 AAAGCATCGGTCCTACGTTG 58.278 50.000 0.00 0.00 36.82 4.10
2252 7154 2.028385 AGAAAAGCATCGGTCCTACGTT 60.028 45.455 0.00 0.00 34.94 3.99
2253 7155 1.549170 AGAAAAGCATCGGTCCTACGT 59.451 47.619 0.00 0.00 34.94 3.57
2293 7195 2.067013 GCGACTAAACAACCCTCACTC 58.933 52.381 0.00 0.00 0.00 3.51
2297 7199 1.197036 GCAAGCGACTAAACAACCCTC 59.803 52.381 0.00 0.00 0.00 4.30
2306 7208 0.317799 TTACCCGTGCAAGCGACTAA 59.682 50.000 0.00 0.00 0.00 2.24
2318 7220 3.765511 TGTTGTACTAGATGCTTACCCGT 59.234 43.478 0.00 0.00 0.00 5.28
2330 7232 3.402628 ACACAGCCCTTGTTGTACTAG 57.597 47.619 0.00 0.00 38.16 2.57
2366 7271 2.162608 GAGCTAGCGACTCTGACTTTCA 59.837 50.000 9.55 0.00 0.00 2.69
2368 7273 1.131504 CGAGCTAGCGACTCTGACTTT 59.868 52.381 9.55 0.00 31.71 2.66
2383 7288 1.610673 ATGGTCACCTCCACGAGCT 60.611 57.895 0.00 0.00 40.51 4.09
2399 7304 3.354948 TTGTCCCCAAGAGTCATCATG 57.645 47.619 0.00 0.00 0.00 3.07
2424 7329 5.109903 GCTATCCACACGAGTACAATCTTT 58.890 41.667 0.00 0.00 0.00 2.52
2427 7332 3.181479 TGGCTATCCACACGAGTACAATC 60.181 47.826 0.00 0.00 37.47 2.67
2428 7333 2.764010 TGGCTATCCACACGAGTACAAT 59.236 45.455 0.00 0.00 37.47 2.71
2449 7354 1.238439 CAAGACAAGTCGGCCAACAT 58.762 50.000 2.24 0.00 34.09 2.71
2450 7355 0.107410 ACAAGACAAGTCGGCCAACA 60.107 50.000 2.24 0.00 34.09 3.33
2464 7369 6.665992 ACCATTACAACAGTCTAGACAAGA 57.334 37.500 24.44 3.96 0.00 3.02
2465 7370 7.359264 CGAAACCATTACAACAGTCTAGACAAG 60.359 40.741 24.44 17.83 0.00 3.16
2466 7371 6.422701 CGAAACCATTACAACAGTCTAGACAA 59.577 38.462 24.44 9.38 0.00 3.18
2467 7372 5.924254 CGAAACCATTACAACAGTCTAGACA 59.076 40.000 24.44 2.39 0.00 3.41
2468 7373 5.163982 GCGAAACCATTACAACAGTCTAGAC 60.164 44.000 15.41 15.41 0.00 2.59
2469 7374 4.927425 GCGAAACCATTACAACAGTCTAGA 59.073 41.667 0.00 0.00 0.00 2.43
2470 7375 4.929808 AGCGAAACCATTACAACAGTCTAG 59.070 41.667 0.00 0.00 0.00 2.43
2471 7376 4.890088 AGCGAAACCATTACAACAGTCTA 58.110 39.130 0.00 0.00 0.00 2.59
2472 7377 3.740115 AGCGAAACCATTACAACAGTCT 58.260 40.909 0.00 0.00 0.00 3.24
2473 7378 3.423123 CGAGCGAAACCATTACAACAGTC 60.423 47.826 0.00 0.00 0.00 3.51
2474 7379 2.478894 CGAGCGAAACCATTACAACAGT 59.521 45.455 0.00 0.00 0.00 3.55
2475 7380 2.478894 ACGAGCGAAACCATTACAACAG 59.521 45.455 0.00 0.00 0.00 3.16
2591 7507 6.406849 GCCCTCCTTCATGCATAATTTTGTAA 60.407 38.462 0.00 0.00 0.00 2.41
2615 7536 0.887387 TTGTTGGTAGCAAGGGTCGC 60.887 55.000 7.79 0.00 0.00 5.19
2616 7537 1.265905 GTTTGTTGGTAGCAAGGGTCG 59.734 52.381 7.79 0.00 0.00 4.79
2617 7538 1.611977 GGTTTGTTGGTAGCAAGGGTC 59.388 52.381 7.79 0.00 0.00 4.46
2618 7539 1.699730 GGTTTGTTGGTAGCAAGGGT 58.300 50.000 7.79 0.00 0.00 4.34
2619 7540 0.596082 CGGTTTGTTGGTAGCAAGGG 59.404 55.000 7.79 0.00 0.00 3.95
2620 7541 1.001815 CACGGTTTGTTGGTAGCAAGG 60.002 52.381 7.79 0.00 0.00 3.61
2621 7542 1.599419 GCACGGTTTGTTGGTAGCAAG 60.599 52.381 7.79 0.00 0.00 4.01
2622 7543 0.382515 GCACGGTTTGTTGGTAGCAA 59.617 50.000 2.54 2.54 0.00 3.91
2623 7544 0.464735 AGCACGGTTTGTTGGTAGCA 60.465 50.000 0.00 0.00 0.00 3.49
2624 7545 1.196127 GTAGCACGGTTTGTTGGTAGC 59.804 52.381 0.00 0.00 0.00 3.58
2625 7546 2.485903 TGTAGCACGGTTTGTTGGTAG 58.514 47.619 0.00 0.00 0.00 3.18
2626 7547 2.616634 TGTAGCACGGTTTGTTGGTA 57.383 45.000 0.00 0.00 0.00 3.25
2627 7548 1.673920 CTTGTAGCACGGTTTGTTGGT 59.326 47.619 0.00 0.00 0.00 3.67
2628 7549 1.599419 GCTTGTAGCACGGTTTGTTGG 60.599 52.381 0.00 0.00 41.89 3.77
2629 7550 1.599419 GGCTTGTAGCACGGTTTGTTG 60.599 52.381 0.67 0.00 44.75 3.33
2630 7551 0.666374 GGCTTGTAGCACGGTTTGTT 59.334 50.000 0.67 0.00 44.75 2.83
2631 7552 1.503818 CGGCTTGTAGCACGGTTTGT 61.504 55.000 0.67 0.00 44.75 2.83
2632 7553 1.206578 CGGCTTGTAGCACGGTTTG 59.793 57.895 0.67 0.00 44.75 2.93
2633 7554 0.816421 AACGGCTTGTAGCACGGTTT 60.816 50.000 11.98 0.00 44.75 3.27
2634 7555 1.226030 GAACGGCTTGTAGCACGGTT 61.226 55.000 11.98 7.67 44.75 4.44
2635 7556 1.666872 GAACGGCTTGTAGCACGGT 60.667 57.895 11.98 7.02 44.75 4.83
2636 7557 2.726691 CGAACGGCTTGTAGCACGG 61.727 63.158 11.98 0.23 44.75 4.94
2637 7558 2.726691 CCGAACGGCTTGTAGCACG 61.727 63.158 0.00 4.80 44.75 5.34
2638 7559 2.388232 CCCGAACGGCTTGTAGCAC 61.388 63.158 7.80 0.00 44.75 4.40
2639 7560 2.047655 CCCGAACGGCTTGTAGCA 60.048 61.111 7.80 0.00 44.75 3.49
2648 7569 0.806884 TGCTAATTACGCCCGAACGG 60.807 55.000 6.25 6.25 37.37 4.44
2649 7570 1.000884 TTGCTAATTACGCCCGAACG 58.999 50.000 0.00 0.00 39.50 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.