Multiple sequence alignment - TraesCS1B01G323000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G323000 chr1B 100.000 5858 0 0 1 5858 548196855 548190998 0.000000e+00 10818.0
1 TraesCS1B01G323000 chr1B 83.530 2708 348 50 3172 5817 8819922 8817251 0.000000e+00 2440.0
2 TraesCS1B01G323000 chr1D 97.211 3084 53 11 2806 5856 407672925 407669842 0.000000e+00 5188.0
3 TraesCS1B01G323000 chr1D 87.172 2705 264 45 3156 5807 6714624 6711950 0.000000e+00 2996.0
4 TraesCS1B01G323000 chr1D 96.406 1614 39 3 958 2554 407674529 407672918 0.000000e+00 2641.0
5 TraesCS1B01G323000 chr1D 84.140 2705 334 55 3172 5814 6913162 6915833 0.000000e+00 2531.0
6 TraesCS1B01G323000 chr1D 80.594 438 41 25 1098 1528 6901227 6901627 1.230000e-76 298.0
7 TraesCS1B01G323000 chr1D 100.000 31 0 0 5828 5858 232558543 232558513 2.280000e-04 58.4
8 TraesCS1B01G323000 chr1A 91.446 3016 186 29 2816 5810 7834373 7837337 0.000000e+00 4074.0
9 TraesCS1B01G323000 chr1A 86.937 2710 269 43 3156 5810 8144516 8141837 0.000000e+00 2964.0
10 TraesCS1B01G323000 chr1A 83.198 2577 340 55 3172 5685 8331950 8334496 0.000000e+00 2274.0
11 TraesCS1B01G323000 chr1A 82.353 2720 377 61 3172 5814 8342046 8344739 0.000000e+00 2268.0
12 TraesCS1B01G323000 chr1A 82.959 1913 263 33 3114 4994 9375704 9373823 0.000000e+00 1668.0
13 TraesCS1B01G323000 chr1A 85.672 670 39 15 1570 2238 8339059 8339672 0.000000e+00 652.0
14 TraesCS1B01G323000 chr1A 83.750 560 54 10 2876 3417 8339912 8340452 4.080000e-136 496.0
15 TraesCS1B01G323000 chr1A 84.055 508 54 12 1 494 8329985 8330479 1.150000e-126 464.0
16 TraesCS1B01G323000 chr1A 93.925 214 12 1 2135 2348 7834088 7834300 7.320000e-84 322.0
17 TraesCS1B01G323000 chr1A 93.651 126 7 1 2248 2373 8339652 8339776 2.790000e-43 187.0
18 TraesCS1B01G323000 chr1A 89.116 147 14 1 542 688 8330592 8330736 1.300000e-41 182.0
19 TraesCS1B01G323000 chr1A 100.000 68 0 0 2487 2554 8339811 8339878 6.160000e-25 126.0
20 TraesCS1B01G323000 chr1A 94.444 36 1 1 5822 5856 592377776 592377811 3.000000e-03 54.7
21 TraesCS1B01G323000 chr5A 89.399 2764 253 20 3080 5817 12194307 12191558 0.000000e+00 3445.0
22 TraesCS1B01G323000 chr5A 82.266 406 36 14 1826 2221 12195780 12195401 9.470000e-83 318.0
23 TraesCS1B01G323000 chr5A 81.529 157 17 7 2838 2987 12195014 12194863 1.030000e-22 119.0
24 TraesCS1B01G323000 chr5B 88.925 2763 268 22 3080 5817 13776224 13773475 0.000000e+00 3373.0
25 TraesCS1B01G323000 chr5B 78.445 849 101 37 1103 1918 13777904 13777105 4.110000e-131 479.0
26 TraesCS1B01G323000 chr5B 82.105 570 59 22 1209 1775 549553248 549553777 1.160000e-121 448.0
27 TraesCS1B01G323000 chr5B 93.750 256 15 1 2552 2807 250927395 250927141 3.310000e-102 383.0
28 TraesCS1B01G323000 chr5B 82.222 270 19 13 1964 2221 13777090 13776838 7.690000e-49 206.0
29 TraesCS1B01G323000 chr5B 87.611 113 11 3 1102 1211 549553055 549553167 1.710000e-25 128.0
30 TraesCS1B01G323000 chr5B 80.226 177 23 7 2838 3007 13776435 13776264 7.970000e-24 122.0
31 TraesCS1B01G323000 chr5B 89.011 91 7 2 2374 2461 572353190 572353100 6.210000e-20 110.0
32 TraesCS1B01G323000 chr4B 87.034 2576 247 40 3284 5810 36635738 36633201 0.000000e+00 2826.0
33 TraesCS1B01G323000 chr2D 84.059 2710 335 62 3156 5810 469984024 469986691 0.000000e+00 2521.0
34 TraesCS1B01G323000 chr2D 83.829 2659 334 55 3172 5775 599926425 599929042 0.000000e+00 2440.0
35 TraesCS1B01G323000 chr2D 83.212 2609 338 60 3156 5693 469990572 469993151 0.000000e+00 2300.0
36 TraesCS1B01G323000 chr2B 83.834 2598 333 56 3156 5693 548623975 548626545 0.000000e+00 2390.0
37 TraesCS1B01G323000 chr2B 83.930 2570 329 47 3172 5691 729766595 729769130 0.000000e+00 2381.0
38 TraesCS1B01G323000 chr5D 89.582 1315 116 12 4516 5814 18085120 18086429 0.000000e+00 1650.0
39 TraesCS1B01G323000 chr5D 79.862 1157 129 44 1103 2221 18081932 18083022 0.000000e+00 750.0
40 TraesCS1B01G323000 chr5D 91.603 262 22 0 2546 2807 410323611 410323872 4.310000e-96 363.0
41 TraesCS1B01G323000 chr5D 80.791 177 22 7 2838 3007 18083374 18083545 1.710000e-25 128.0
42 TraesCS1B01G323000 chr5D 89.394 66 6 1 2490 2554 18083300 18083365 1.350000e-11 82.4
43 TraesCS1B01G323000 chr5D 90.476 42 4 0 5817 5858 533641475 533641516 8.200000e-04 56.5
44 TraesCS1B01G323000 chr2A 85.643 1205 145 18 4627 5813 611297823 611299017 0.000000e+00 1242.0
45 TraesCS1B01G323000 chr2A 86.842 76 10 0 542 617 733632477 733632552 1.050000e-12 86.1
46 TraesCS1B01G323000 chr3B 93.385 257 17 0 2551 2807 480376940 480377196 1.190000e-101 381.0
47 TraesCS1B01G323000 chr3B 93.050 259 18 0 2549 2807 692738398 692738140 4.280000e-101 379.0
48 TraesCS1B01G323000 chr7A 91.882 271 19 3 2537 2807 646560459 646560192 5.540000e-100 375.0
49 TraesCS1B01G323000 chr7A 91.667 96 3 3 2371 2461 41045001 41045096 1.710000e-25 128.0
50 TraesCS1B01G323000 chr7A 90.526 95 4 2 2372 2461 41045096 41045002 2.870000e-23 121.0
51 TraesCS1B01G323000 chr3A 92.996 257 18 0 2551 2807 529850169 529849913 5.540000e-100 375.0
52 TraesCS1B01G323000 chr3A 92.500 40 2 1 5820 5858 168836665 168836704 8.200000e-04 56.5
53 TraesCS1B01G323000 chr3D 92.607 257 19 0 2551 2807 369414161 369414417 2.580000e-98 370.0
54 TraesCS1B01G323000 chr3D 90.977 266 24 0 2552 2817 256149731 256149466 5.580000e-95 359.0
55 TraesCS1B01G323000 chr6A 92.278 259 18 1 2549 2807 235843383 235843639 3.340000e-97 366.0
56 TraesCS1B01G323000 chr6A 90.625 96 6 3 2372 2464 608978304 608978209 2.220000e-24 124.0
57 TraesCS1B01G323000 chr7B 90.526 95 4 3 2371 2464 426367833 426367743 2.870000e-23 121.0
58 TraesCS1B01G323000 chr7B 90.217 92 4 2 2371 2461 426367745 426367832 1.330000e-21 115.0
59 TraesCS1B01G323000 chr6B 88.542 96 4 3 2374 2463 113372124 113372218 6.210000e-20 110.0
60 TraesCS1B01G323000 chr6B 88.172 93 8 3 2372 2461 704372155 704372247 2.230000e-19 108.0
61 TraesCS1B01G323000 chr6B 94.595 37 1 1 5823 5858 20393437 20393401 8.200000e-04 56.5
62 TraesCS1B01G323000 chr4A 100.000 31 0 0 5828 5858 17382883 17382913 2.280000e-04 58.4
63 TraesCS1B01G323000 chr4A 94.444 36 2 0 5823 5858 638216930 638216895 8.200000e-04 56.5
64 TraesCS1B01G323000 chrUn 94.444 36 2 0 5823 5858 55726259 55726294 8.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G323000 chr1B 548190998 548196855 5857 True 10818.000000 10818 100.000000 1 5858 1 chr1B.!!$R2 5857
1 TraesCS1B01G323000 chr1B 8817251 8819922 2671 True 2440.000000 2440 83.530000 3172 5817 1 chr1B.!!$R1 2645
2 TraesCS1B01G323000 chr1D 407669842 407674529 4687 True 3914.500000 5188 96.808500 958 5856 2 chr1D.!!$R3 4898
3 TraesCS1B01G323000 chr1D 6711950 6714624 2674 True 2996.000000 2996 87.172000 3156 5807 1 chr1D.!!$R1 2651
4 TraesCS1B01G323000 chr1D 6913162 6915833 2671 False 2531.000000 2531 84.140000 3172 5814 1 chr1D.!!$F2 2642
5 TraesCS1B01G323000 chr1A 8141837 8144516 2679 True 2964.000000 2964 86.937000 3156 5810 1 chr1A.!!$R1 2654
6 TraesCS1B01G323000 chr1A 7834088 7837337 3249 False 2198.000000 4074 92.685500 2135 5810 2 chr1A.!!$F2 3675
7 TraesCS1B01G323000 chr1A 9373823 9375704 1881 True 1668.000000 1668 82.959000 3114 4994 1 chr1A.!!$R2 1880
8 TraesCS1B01G323000 chr1A 8329985 8334496 4511 False 973.333333 2274 85.456333 1 5685 3 chr1A.!!$F3 5684
9 TraesCS1B01G323000 chr1A 8339059 8344739 5680 False 745.800000 2268 89.085200 1570 5814 5 chr1A.!!$F4 4244
10 TraesCS1B01G323000 chr5A 12191558 12195780 4222 True 1294.000000 3445 84.398000 1826 5817 3 chr5A.!!$R1 3991
11 TraesCS1B01G323000 chr5B 13773475 13777904 4429 True 1045.000000 3373 82.454500 1103 5817 4 chr5B.!!$R3 4714
12 TraesCS1B01G323000 chr5B 549553055 549553777 722 False 288.000000 448 84.858000 1102 1775 2 chr5B.!!$F1 673
13 TraesCS1B01G323000 chr4B 36633201 36635738 2537 True 2826.000000 2826 87.034000 3284 5810 1 chr4B.!!$R1 2526
14 TraesCS1B01G323000 chr2D 599926425 599929042 2617 False 2440.000000 2440 83.829000 3172 5775 1 chr2D.!!$F1 2603
15 TraesCS1B01G323000 chr2D 469984024 469993151 9127 False 2410.500000 2521 83.635500 3156 5810 2 chr2D.!!$F2 2654
16 TraesCS1B01G323000 chr2B 548623975 548626545 2570 False 2390.000000 2390 83.834000 3156 5693 1 chr2B.!!$F1 2537
17 TraesCS1B01G323000 chr2B 729766595 729769130 2535 False 2381.000000 2381 83.930000 3172 5691 1 chr2B.!!$F2 2519
18 TraesCS1B01G323000 chr5D 18081932 18086429 4497 False 652.600000 1650 84.907250 1103 5814 4 chr5D.!!$F3 4711
19 TraesCS1B01G323000 chr2A 611297823 611299017 1194 False 1242.000000 1242 85.643000 4627 5813 1 chr2A.!!$F1 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1007 0.035176 GCAGGCCTCCATCTCATCTC 59.965 60.000 0.00 0.00 0.00 2.75 F
954 1034 0.040058 ATTCATGACTGGCAGGCCAA 59.960 50.000 19.69 8.47 46.63 4.52 F
1505 1769 1.363246 TATTGCCACCACTACCACCA 58.637 50.000 0.00 0.00 0.00 4.17 F
2603 3193 1.133407 TGGTTTTCGTGCAAGTCAACC 59.867 47.619 20.53 20.53 35.25 3.77 F
3213 4374 1.222936 CGGGCTTCTCCTCTTGCAT 59.777 57.895 0.00 0.00 34.39 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2470 0.868406 GGCAACACACAGAGCAGTAC 59.132 55.000 0.00 0.00 0.00 2.73 R
2583 3173 1.133407 GGTTGACTTGCACGAAAACCA 59.867 47.619 19.43 0.59 37.57 3.67 R
3213 4374 0.545309 AGGAGCACCAAGGAGCAGTA 60.545 55.000 11.05 0.00 38.94 2.74 R
4206 7286 0.034896 GCGGTGACTTCTGGGAGAAA 59.965 55.000 0.00 0.00 33.19 2.52 R
5118 14886 1.961277 GCACTCACGACAACCCTGG 60.961 63.158 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 4.265073 ACGAATGAGAAAAGGAATCCAGG 58.735 43.478 0.61 0.00 0.00 4.45
40 42 4.263506 ACGAATGAGAAAAGGAATCCAGGT 60.264 41.667 0.61 0.00 0.00 4.00
49 51 7.470192 AGAAAAGGAATCCAGGTTTGAAGATA 58.530 34.615 0.61 0.00 0.00 1.98
51 53 5.379706 AGGAATCCAGGTTTGAAGATAGG 57.620 43.478 0.61 0.00 0.00 2.57
52 54 5.039645 AGGAATCCAGGTTTGAAGATAGGA 58.960 41.667 0.61 0.00 0.00 2.94
53 55 5.104318 AGGAATCCAGGTTTGAAGATAGGAC 60.104 44.000 0.61 0.00 0.00 3.85
55 57 5.983333 ATCCAGGTTTGAAGATAGGACAT 57.017 39.130 0.00 0.00 0.00 3.06
77 87 9.494271 GACATGATGGTATGTAATATGTTGACT 57.506 33.333 0.00 0.00 41.15 3.41
81 91 9.981114 TGATGGTATGTAATATGTTGACTACTG 57.019 33.333 0.00 0.00 0.00 2.74
101 111 8.204160 ACTACTGCTACATATAAATGCACTTGA 58.796 33.333 0.00 0.00 36.50 3.02
102 112 7.251704 ACTGCTACATATAAATGCACTTGAC 57.748 36.000 0.00 0.00 36.50 3.18
103 113 6.018751 ACTGCTACATATAAATGCACTTGACG 60.019 38.462 0.00 0.00 36.50 4.35
107 117 7.042992 GCTACATATAAATGCACTTGACGTGTA 60.043 37.037 0.00 0.00 45.57 2.90
113 123 4.864916 ATGCACTTGACGTGTATTGATC 57.135 40.909 0.00 0.00 45.07 2.92
121 131 7.531871 CACTTGACGTGTATTGATCTTTTTCTG 59.468 37.037 0.00 0.00 38.84 3.02
139 149 4.933505 TCTGCTATCACCATCTTCTCTG 57.066 45.455 0.00 0.00 0.00 3.35
142 152 4.229639 TGCTATCACCATCTTCTCTGGAT 58.770 43.478 0.00 0.00 37.22 3.41
151 161 8.756927 TCACCATCTTCTCTGGATGATATTATC 58.243 37.037 5.41 0.00 42.02 1.75
152 162 8.537858 CACCATCTTCTCTGGATGATATTATCA 58.462 37.037 8.76 8.76 42.02 2.15
155 165 8.760735 CATCTTCTCTGGATGATATTATCACCT 58.239 37.037 8.51 0.00 43.01 4.00
156 166 8.733092 TCTTCTCTGGATGATATTATCACCTT 57.267 34.615 8.51 0.00 43.01 3.50
157 167 9.163894 TCTTCTCTGGATGATATTATCACCTTT 57.836 33.333 8.51 0.00 43.01 3.11
158 168 9.790344 CTTCTCTGGATGATATTATCACCTTTT 57.210 33.333 8.51 0.00 43.01 2.27
159 169 9.565090 TTCTCTGGATGATATTATCACCTTTTG 57.435 33.333 8.51 0.26 43.01 2.44
160 170 8.937835 TCTCTGGATGATATTATCACCTTTTGA 58.062 33.333 8.51 2.35 43.01 2.69
161 171 9.217278 CTCTGGATGATATTATCACCTTTTGAG 57.783 37.037 8.51 12.37 43.01 3.02
162 172 8.717717 TCTGGATGATATTATCACCTTTTGAGT 58.282 33.333 8.51 0.00 43.01 3.41
245 258 9.768662 AGTAATGCAATGACATTCTTTCTTTTT 57.231 25.926 0.00 0.00 40.64 1.94
274 287 6.870971 ATGGTTTTGCTCGAAAGTAACTTA 57.129 33.333 0.00 0.00 0.00 2.24
280 293 7.900782 TTTGCTCGAAAGTAACTTAGCTAAT 57.099 32.000 6.64 0.00 0.00 1.73
285 298 9.245962 GCTCGAAAGTAACTTAGCTAATAATGA 57.754 33.333 6.64 0.00 0.00 2.57
287 300 9.229784 TCGAAAGTAACTTAGCTAATAATGACG 57.770 33.333 6.64 6.89 0.00 4.35
316 329 2.504367 TGCAGCAACCTAGAAGAAACC 58.496 47.619 0.00 0.00 0.00 3.27
317 330 2.106511 TGCAGCAACCTAGAAGAAACCT 59.893 45.455 0.00 0.00 0.00 3.50
320 333 2.028020 AGCAACCTAGAAGAAACCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
324 337 1.405661 CCTAGAAGAAACCTCCGCCAC 60.406 57.143 0.00 0.00 0.00 5.01
331 344 4.988716 ACCTCCGCCACTGGACGA 62.989 66.667 11.94 0.10 33.48 4.20
332 345 3.461773 CCTCCGCCACTGGACGAT 61.462 66.667 11.94 0.00 33.48 3.73
355 368 7.378728 CGATAATTCGTCACATAAAGTGCTCTA 59.621 37.037 0.00 0.00 41.24 2.43
375 388 0.251354 TCTCCTTGAGTCCATGCTGC 59.749 55.000 0.00 0.00 0.00 5.25
378 391 1.030488 CCTTGAGTCCATGCTGCCAG 61.030 60.000 0.00 0.00 0.00 4.85
413 427 7.345914 AGAAGCATCCTCCTACTGTAATAACTT 59.654 37.037 0.00 0.00 0.00 2.66
417 431 8.585881 GCATCCTCCTACTGTAATAACTTCATA 58.414 37.037 0.00 0.00 0.00 2.15
464 478 8.713708 TCTTACAAATTTGGTAAAGGATTCCA 57.286 30.769 21.74 3.82 30.92 3.53
465 479 8.581578 TCTTACAAATTTGGTAAAGGATTCCAC 58.418 33.333 21.74 0.00 30.92 4.02
466 480 6.109156 ACAAATTTGGTAAAGGATTCCACC 57.891 37.500 21.74 4.63 34.60 4.61
467 481 5.604650 ACAAATTTGGTAAAGGATTCCACCA 59.395 36.000 21.74 8.88 40.19 4.17
468 482 6.165577 CAAATTTGGTAAAGGATTCCACCAG 58.834 40.000 10.49 0.00 42.02 4.00
479 493 1.737355 TTCCACCAGCAGCAGCAAAC 61.737 55.000 3.17 0.00 45.49 2.93
482 496 0.179105 CACCAGCAGCAGCAAACAAA 60.179 50.000 3.17 0.00 45.49 2.83
488 502 3.064271 CAGCAGCAGCAAACAAATGTTTT 59.936 39.130 8.73 0.00 45.54 2.43
515 552 9.462174 TTTTTCTTTCTACTGTATGCAAATGTG 57.538 29.630 0.00 0.00 0.00 3.21
539 576 6.597280 TGCTGATGTATTTATGTGCTGTGTTA 59.403 34.615 0.00 0.00 0.00 2.41
540 577 7.120432 TGCTGATGTATTTATGTGCTGTGTTAA 59.880 33.333 0.00 0.00 0.00 2.01
573 653 5.127371 GTGCTTACACGCTCATACTAAAC 57.873 43.478 0.00 0.00 36.98 2.01
578 658 3.926616 ACACGCTCATACTAAACTGCTT 58.073 40.909 0.00 0.00 0.00 3.91
579 659 5.068234 ACACGCTCATACTAAACTGCTTA 57.932 39.130 0.00 0.00 0.00 3.09
595 675 2.861286 GCTTAGAGAAAAAGCTGCAGC 58.139 47.619 31.53 31.53 44.75 5.25
596 676 2.727298 GCTTAGAGAAAAAGCTGCAGCG 60.727 50.000 31.78 14.56 44.75 5.18
606 686 1.647629 GCTGCAGCGATTCATCCTG 59.352 57.895 25.23 0.00 0.00 3.86
607 687 1.647629 CTGCAGCGATTCATCCTGC 59.352 57.895 17.01 17.01 44.31 4.85
616 696 4.398988 AGCGATTCATCCTGCATAAAAACA 59.601 37.500 0.00 0.00 0.00 2.83
618 698 5.400485 GCGATTCATCCTGCATAAAAACATC 59.600 40.000 0.00 0.00 0.00 3.06
621 701 8.013947 CGATTCATCCTGCATAAAAACATCTAG 58.986 37.037 0.00 0.00 0.00 2.43
664 744 5.333566 TTTAGACCTGGGATTGGAACTTT 57.666 39.130 0.00 0.00 0.00 2.66
674 754 6.369629 TGGGATTGGAACTTTGAAACTTCTA 58.630 36.000 0.00 0.00 0.00 2.10
675 755 6.836527 TGGGATTGGAACTTTGAAACTTCTAA 59.163 34.615 0.38 0.38 0.00 2.10
688 768 5.705441 TGAAACTTCTAATTACAGTGCAGGG 59.295 40.000 0.00 0.00 0.00 4.45
689 769 5.499004 AACTTCTAATTACAGTGCAGGGA 57.501 39.130 0.00 0.00 0.00 4.20
690 770 5.700402 ACTTCTAATTACAGTGCAGGGAT 57.300 39.130 0.00 0.00 0.00 3.85
691 771 6.808321 ACTTCTAATTACAGTGCAGGGATA 57.192 37.500 0.00 0.00 0.00 2.59
692 772 6.821388 ACTTCTAATTACAGTGCAGGGATAG 58.179 40.000 0.00 0.00 0.00 2.08
693 773 5.808366 TCTAATTACAGTGCAGGGATAGG 57.192 43.478 0.00 0.00 0.00 2.57
694 774 5.216622 TCTAATTACAGTGCAGGGATAGGT 58.783 41.667 0.00 0.00 0.00 3.08
695 775 4.862641 AATTACAGTGCAGGGATAGGTT 57.137 40.909 0.00 0.00 0.00 3.50
696 776 5.968676 AATTACAGTGCAGGGATAGGTTA 57.031 39.130 0.00 0.00 0.00 2.85
697 777 4.748277 TTACAGTGCAGGGATAGGTTAC 57.252 45.455 0.00 0.00 0.00 2.50
698 778 2.834113 ACAGTGCAGGGATAGGTTACT 58.166 47.619 0.00 0.00 0.00 2.24
699 779 2.501723 ACAGTGCAGGGATAGGTTACTG 59.498 50.000 0.00 0.00 39.77 2.74
700 780 2.501723 CAGTGCAGGGATAGGTTACTGT 59.498 50.000 0.00 0.00 33.62 3.55
701 781 3.055094 CAGTGCAGGGATAGGTTACTGTT 60.055 47.826 0.00 0.00 33.62 3.16
702 782 4.161565 CAGTGCAGGGATAGGTTACTGTTA 59.838 45.833 0.00 0.00 33.62 2.41
703 783 4.406003 AGTGCAGGGATAGGTTACTGTTAG 59.594 45.833 0.00 0.00 33.62 2.34
704 784 3.134081 TGCAGGGATAGGTTACTGTTAGC 59.866 47.826 0.00 0.00 33.62 3.09
705 785 3.134081 GCAGGGATAGGTTACTGTTAGCA 59.866 47.826 0.00 0.00 33.62 3.49
706 786 4.202367 GCAGGGATAGGTTACTGTTAGCAT 60.202 45.833 0.00 0.00 33.62 3.79
707 787 5.300752 CAGGGATAGGTTACTGTTAGCATG 58.699 45.833 0.00 0.00 0.00 4.06
708 788 4.065789 GGGATAGGTTACTGTTAGCATGC 58.934 47.826 10.51 10.51 0.00 4.06
709 789 4.202367 GGGATAGGTTACTGTTAGCATGCT 60.202 45.833 25.99 25.99 0.00 3.79
710 790 5.368989 GGATAGGTTACTGTTAGCATGCTT 58.631 41.667 28.02 10.09 0.00 3.91
711 791 6.463897 GGGATAGGTTACTGTTAGCATGCTTA 60.464 42.308 28.02 15.12 0.00 3.09
712 792 6.647067 GGATAGGTTACTGTTAGCATGCTTAG 59.353 42.308 28.02 22.33 0.00 2.18
713 793 4.770795 AGGTTACTGTTAGCATGCTTAGG 58.229 43.478 28.02 14.51 0.00 2.69
714 794 4.225267 AGGTTACTGTTAGCATGCTTAGGT 59.775 41.667 28.02 19.24 0.00 3.08
715 795 5.424252 AGGTTACTGTTAGCATGCTTAGGTA 59.576 40.000 28.02 18.26 0.00 3.08
716 796 6.099845 AGGTTACTGTTAGCATGCTTAGGTAT 59.900 38.462 28.02 10.20 0.00 2.73
717 797 6.766467 GGTTACTGTTAGCATGCTTAGGTATT 59.234 38.462 28.02 7.30 0.00 1.89
718 798 7.254795 GGTTACTGTTAGCATGCTTAGGTATTG 60.255 40.741 28.02 10.54 0.00 1.90
719 799 5.745227 ACTGTTAGCATGCTTAGGTATTGT 58.255 37.500 28.02 11.15 0.00 2.71
720 800 6.180472 ACTGTTAGCATGCTTAGGTATTGTT 58.820 36.000 28.02 0.00 0.00 2.83
721 801 7.335627 ACTGTTAGCATGCTTAGGTATTGTTA 58.664 34.615 28.02 0.00 0.00 2.41
722 802 7.827236 ACTGTTAGCATGCTTAGGTATTGTTAA 59.173 33.333 28.02 6.26 0.00 2.01
723 803 8.568676 TGTTAGCATGCTTAGGTATTGTTAAA 57.431 30.769 28.02 6.03 0.00 1.52
724 804 9.184523 TGTTAGCATGCTTAGGTATTGTTAAAT 57.815 29.630 28.02 0.00 0.00 1.40
754 834 7.824289 TGTTTTCAGAATGTACCTAATCAGGAG 59.176 37.037 0.00 0.00 40.34 3.69
756 836 6.716934 TCAGAATGTACCTAATCAGGAGAC 57.283 41.667 0.00 0.00 40.34 3.36
787 867 7.807977 AGCTGTATAATCACCTGGTATTTTG 57.192 36.000 0.00 0.00 0.00 2.44
793 873 9.463443 GTATAATCACCTGGTATTTTGAAATGC 57.537 33.333 0.00 0.00 0.00 3.56
815 895 6.556639 TGCCTGTCTGATTCCTATATAGTCT 58.443 40.000 8.92 0.00 0.00 3.24
842 922 8.682710 TGGATAAACCAAATCATACTGTAAAGC 58.317 33.333 0.00 0.00 46.75 3.51
843 923 8.135529 GGATAAACCAAATCATACTGTAAAGCC 58.864 37.037 0.00 0.00 38.79 4.35
844 924 6.909550 AAACCAAATCATACTGTAAAGCCA 57.090 33.333 0.00 0.00 0.00 4.75
845 925 5.897377 ACCAAATCATACTGTAAAGCCAC 57.103 39.130 0.00 0.00 0.00 5.01
847 927 5.648092 ACCAAATCATACTGTAAAGCCACTC 59.352 40.000 0.00 0.00 0.00 3.51
854 934 4.273148 ACTGTAAAGCCACTCGAATCTT 57.727 40.909 0.00 0.00 0.00 2.40
857 937 2.568623 AAAGCCACTCGAATCTTGGT 57.431 45.000 4.48 0.00 32.50 3.67
859 939 0.250513 AGCCACTCGAATCTTGGTCC 59.749 55.000 4.48 0.00 32.50 4.46
869 949 2.074729 ATCTTGGTCCCTCCGTCTAG 57.925 55.000 0.00 0.00 39.52 2.43
870 950 0.997363 TCTTGGTCCCTCCGTCTAGA 59.003 55.000 0.00 0.00 39.52 2.43
873 953 0.547075 TGGTCCCTCCGTCTAGAGAG 59.453 60.000 0.00 0.00 39.52 3.20
875 955 1.475571 GGTCCCTCCGTCTAGAGAGTC 60.476 61.905 7.91 0.00 35.82 3.36
893 973 4.536687 GCTTCCGGCGGCGAATTG 62.537 66.667 34.49 19.39 0.00 2.32
894 974 4.536687 CTTCCGGCGGCGAATTGC 62.537 66.667 34.49 0.00 45.38 3.56
903 983 3.165318 GCGAATTGCAACACCGCG 61.165 61.111 20.63 0.00 45.45 6.46
904 984 2.553770 CGAATTGCAACACCGCGA 59.446 55.556 8.23 0.00 33.35 5.87
905 985 1.082431 CGAATTGCAACACCGCGAA 60.082 52.632 8.23 0.00 33.35 4.70
906 986 0.454285 CGAATTGCAACACCGCGAAT 60.454 50.000 8.23 0.00 33.35 3.34
907 987 0.984109 GAATTGCAACACCGCGAATG 59.016 50.000 8.23 8.44 33.35 2.67
908 988 0.388391 AATTGCAACACCGCGAATGG 60.388 50.000 8.23 0.00 33.35 3.16
909 989 2.817470 ATTGCAACACCGCGAATGGC 62.817 55.000 8.23 5.13 38.69 4.40
910 990 4.036804 GCAACACCGCGAATGGCA 62.037 61.111 8.23 0.00 43.84 4.92
911 991 2.176546 CAACACCGCGAATGGCAG 59.823 61.111 8.23 0.00 43.84 4.85
912 992 3.055719 AACACCGCGAATGGCAGG 61.056 61.111 8.23 0.00 43.84 4.85
918 998 4.802051 GCGAATGGCAGGCCTCCA 62.802 66.667 21.57 21.57 42.87 3.86
919 999 2.194056 CGAATGGCAGGCCTCCAT 59.806 61.111 23.52 23.52 45.70 3.41
920 1000 1.895707 CGAATGGCAGGCCTCCATC 60.896 63.158 27.05 20.62 43.13 3.51
921 1001 1.535685 GAATGGCAGGCCTCCATCT 59.464 57.895 27.05 19.72 43.13 2.90
922 1002 0.536915 GAATGGCAGGCCTCCATCTC 60.537 60.000 27.05 22.27 43.13 2.75
923 1003 1.284111 AATGGCAGGCCTCCATCTCA 61.284 55.000 27.05 11.37 43.13 3.27
924 1004 1.066585 ATGGCAGGCCTCCATCTCAT 61.067 55.000 23.52 10.62 40.08 2.90
925 1005 1.072852 GGCAGGCCTCCATCTCATC 59.927 63.158 0.00 0.00 0.00 2.92
926 1006 1.417288 GGCAGGCCTCCATCTCATCT 61.417 60.000 0.00 0.00 0.00 2.90
927 1007 0.035176 GCAGGCCTCCATCTCATCTC 59.965 60.000 0.00 0.00 0.00 2.75
928 1008 1.719529 CAGGCCTCCATCTCATCTCT 58.280 55.000 0.00 0.00 0.00 3.10
929 1009 2.048601 CAGGCCTCCATCTCATCTCTT 58.951 52.381 0.00 0.00 0.00 2.85
930 1010 2.438763 CAGGCCTCCATCTCATCTCTTT 59.561 50.000 0.00 0.00 0.00 2.52
931 1011 2.705127 AGGCCTCCATCTCATCTCTTTC 59.295 50.000 0.00 0.00 0.00 2.62
932 1012 2.705127 GGCCTCCATCTCATCTCTTTCT 59.295 50.000 0.00 0.00 0.00 2.52
933 1013 3.244181 GGCCTCCATCTCATCTCTTTCTC 60.244 52.174 0.00 0.00 0.00 2.87
934 1014 3.642848 GCCTCCATCTCATCTCTTTCTCT 59.357 47.826 0.00 0.00 0.00 3.10
935 1015 4.832266 GCCTCCATCTCATCTCTTTCTCTA 59.168 45.833 0.00 0.00 0.00 2.43
942 1022 8.586744 CCATCTCATCTCTTTCTCTATTCATGA 58.413 37.037 0.00 0.00 0.00 3.07
944 1024 8.765488 TCTCATCTCTTTCTCTATTCATGACT 57.235 34.615 0.00 0.00 0.00 3.41
946 1026 7.724287 TCATCTCTTTCTCTATTCATGACTGG 58.276 38.462 0.00 0.00 0.00 4.00
949 1029 5.668471 TCTTTCTCTATTCATGACTGGCAG 58.332 41.667 14.16 14.16 0.00 4.85
954 1034 0.040058 ATTCATGACTGGCAGGCCAA 59.960 50.000 19.69 8.47 46.63 4.52
1238 1490 7.121315 GCTGTATTTCCTTTATCCTGAACTTGT 59.879 37.037 0.00 0.00 0.00 3.16
1255 1508 9.552114 CTGAACTTGTCAATGCTATAAAAGAAG 57.448 33.333 0.00 0.00 35.22 2.85
1505 1769 1.363246 TATTGCCACCACTACCACCA 58.637 50.000 0.00 0.00 0.00 4.17
1659 1982 5.582689 ACAAGGGACTCAAACAAAAAGAG 57.417 39.130 0.00 0.00 38.49 2.85
1813 2144 9.959749 TTTTATTTCTGTGGTCATACTTTTGTC 57.040 29.630 0.00 0.00 0.00 3.18
2133 2470 3.492102 TCTCCCTCAAAAACAGAGTGG 57.508 47.619 0.00 0.00 0.00 4.00
2139 2483 3.251004 CCTCAAAAACAGAGTGGTACTGC 59.749 47.826 0.00 0.00 38.74 4.40
2388 2952 2.633481 GTGGTACTCCCCTGATCCATAC 59.367 54.545 0.00 0.00 0.00 2.39
2434 3014 4.309933 TCTAGCATACATCCATTTGAGCG 58.690 43.478 0.00 0.00 0.00 5.03
2481 3061 2.157989 AGTACTTTTCTGGGGAGGGAGT 60.158 50.000 0.00 0.00 0.00 3.85
2554 3144 8.175069 TGTTCGACTATGCATTGAAGAAAATAC 58.825 33.333 15.23 8.51 0.00 1.89
2555 3145 8.391106 GTTCGACTATGCATTGAAGAAAATACT 58.609 33.333 15.23 0.00 0.00 2.12
2556 3146 8.131455 TCGACTATGCATTGAAGAAAATACTC 57.869 34.615 15.23 0.00 0.00 2.59
2557 3147 7.224753 TCGACTATGCATTGAAGAAAATACTCC 59.775 37.037 15.23 0.00 0.00 3.85
2558 3148 7.519008 CGACTATGCATTGAAGAAAATACTCCC 60.519 40.741 15.23 0.00 0.00 4.30
2559 3149 7.349598 ACTATGCATTGAAGAAAATACTCCCT 58.650 34.615 15.23 0.00 0.00 4.20
2560 3150 6.705863 ATGCATTGAAGAAAATACTCCCTC 57.294 37.500 0.00 0.00 0.00 4.30
2561 3151 4.949856 TGCATTGAAGAAAATACTCCCTCC 59.050 41.667 0.00 0.00 0.00 4.30
2562 3152 4.035675 GCATTGAAGAAAATACTCCCTCCG 59.964 45.833 0.00 0.00 0.00 4.63
2563 3153 4.903045 TTGAAGAAAATACTCCCTCCGT 57.097 40.909 0.00 0.00 0.00 4.69
2564 3154 4.903045 TGAAGAAAATACTCCCTCCGTT 57.097 40.909 0.00 0.00 0.00 4.44
2565 3155 5.237236 TGAAGAAAATACTCCCTCCGTTT 57.763 39.130 0.00 0.00 0.00 3.60
2566 3156 5.243207 TGAAGAAAATACTCCCTCCGTTTC 58.757 41.667 0.00 0.00 0.00 2.78
2567 3157 4.903045 AGAAAATACTCCCTCCGTTTCA 57.097 40.909 0.00 0.00 0.00 2.69
2568 3158 4.833390 AGAAAATACTCCCTCCGTTTCAG 58.167 43.478 0.00 0.00 0.00 3.02
2569 3159 4.530946 AGAAAATACTCCCTCCGTTTCAGA 59.469 41.667 0.00 0.00 0.00 3.27
2570 3160 4.903045 AAATACTCCCTCCGTTTCAGAA 57.097 40.909 0.00 0.00 0.00 3.02
2571 3161 5.437191 AAATACTCCCTCCGTTTCAGAAT 57.563 39.130 0.00 0.00 0.00 2.40
2572 3162 6.555463 AAATACTCCCTCCGTTTCAGAATA 57.445 37.500 0.00 0.00 0.00 1.75
2573 3163 6.749036 AATACTCCCTCCGTTTCAGAATAT 57.251 37.500 0.00 0.00 0.00 1.28
2574 3164 7.850935 AATACTCCCTCCGTTTCAGAATATA 57.149 36.000 0.00 0.00 0.00 0.86
2575 3165 7.850935 ATACTCCCTCCGTTTCAGAATATAA 57.149 36.000 0.00 0.00 0.00 0.98
2576 3166 6.163135 ACTCCCTCCGTTTCAGAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
2577 3167 5.070580 ACTCCCTCCGTTTCAGAATATAAGG 59.929 44.000 0.00 0.00 0.00 2.69
2578 3168 4.966805 TCCCTCCGTTTCAGAATATAAGGT 59.033 41.667 0.00 0.00 0.00 3.50
2579 3169 5.057149 CCCTCCGTTTCAGAATATAAGGTG 58.943 45.833 0.00 0.00 0.00 4.00
2580 3170 5.396436 CCCTCCGTTTCAGAATATAAGGTGT 60.396 44.000 0.00 0.00 0.00 4.16
2581 3171 6.183360 CCCTCCGTTTCAGAATATAAGGTGTA 60.183 42.308 0.00 0.00 0.00 2.90
2582 3172 7.442656 CCTCCGTTTCAGAATATAAGGTGTAT 58.557 38.462 0.00 0.00 0.00 2.29
2583 3173 7.931948 CCTCCGTTTCAGAATATAAGGTGTATT 59.068 37.037 0.00 0.00 0.00 1.89
2584 3174 8.657074 TCCGTTTCAGAATATAAGGTGTATTG 57.343 34.615 0.00 0.00 0.00 1.90
2585 3175 7.713507 TCCGTTTCAGAATATAAGGTGTATTGG 59.286 37.037 0.00 0.00 0.00 3.16
2586 3176 7.497909 CCGTTTCAGAATATAAGGTGTATTGGT 59.502 37.037 0.00 0.00 0.00 3.67
2587 3177 8.889717 CGTTTCAGAATATAAGGTGTATTGGTT 58.110 33.333 0.00 0.00 0.00 3.67
2591 3181 9.104965 TCAGAATATAAGGTGTATTGGTTTTCG 57.895 33.333 0.00 0.00 0.00 3.46
2592 3182 8.889717 CAGAATATAAGGTGTATTGGTTTTCGT 58.110 33.333 0.00 0.00 0.00 3.85
2593 3183 8.889717 AGAATATAAGGTGTATTGGTTTTCGTG 58.110 33.333 0.00 0.00 0.00 4.35
2594 3184 3.636282 AAGGTGTATTGGTTTTCGTGC 57.364 42.857 0.00 0.00 0.00 5.34
2595 3185 2.577700 AGGTGTATTGGTTTTCGTGCA 58.422 42.857 0.00 0.00 0.00 4.57
2596 3186 2.952978 AGGTGTATTGGTTTTCGTGCAA 59.047 40.909 0.00 0.00 0.00 4.08
2597 3187 3.004315 AGGTGTATTGGTTTTCGTGCAAG 59.996 43.478 0.00 0.00 0.00 4.01
2598 3188 3.243267 GGTGTATTGGTTTTCGTGCAAGT 60.243 43.478 0.00 0.00 0.00 3.16
2599 3189 3.972502 GTGTATTGGTTTTCGTGCAAGTC 59.027 43.478 0.00 0.00 0.00 3.01
2600 3190 3.628032 TGTATTGGTTTTCGTGCAAGTCA 59.372 39.130 0.00 0.00 0.00 3.41
2601 3191 3.791973 ATTGGTTTTCGTGCAAGTCAA 57.208 38.095 0.00 0.00 0.00 3.18
2602 3192 2.553079 TGGTTTTCGTGCAAGTCAAC 57.447 45.000 0.00 4.11 0.00 3.18
2603 3193 1.133407 TGGTTTTCGTGCAAGTCAACC 59.867 47.619 20.53 20.53 35.25 3.77
2604 3194 1.133407 GGTTTTCGTGCAAGTCAACCA 59.867 47.619 21.62 0.00 34.87 3.67
2605 3195 2.223711 GGTTTTCGTGCAAGTCAACCAT 60.224 45.455 21.62 0.00 34.87 3.55
2606 3196 3.443976 GTTTTCGTGCAAGTCAACCATT 58.556 40.909 0.00 0.00 0.00 3.16
2607 3197 3.791973 TTTCGTGCAAGTCAACCATTT 57.208 38.095 0.00 0.00 0.00 2.32
2608 3198 2.772568 TCGTGCAAGTCAACCATTTG 57.227 45.000 0.00 0.00 0.00 2.32
2609 3199 2.293170 TCGTGCAAGTCAACCATTTGA 58.707 42.857 0.00 0.00 39.55 2.69
2610 3200 2.685388 TCGTGCAAGTCAACCATTTGAA 59.315 40.909 0.00 0.00 43.52 2.69
2611 3201 3.317711 TCGTGCAAGTCAACCATTTGAAT 59.682 39.130 0.00 0.00 43.52 2.57
2612 3202 3.426191 CGTGCAAGTCAACCATTTGAATG 59.574 43.478 0.00 0.00 43.52 2.67
2613 3203 4.370917 GTGCAAGTCAACCATTTGAATGT 58.629 39.130 0.00 0.00 43.52 2.71
2614 3204 4.810491 GTGCAAGTCAACCATTTGAATGTT 59.190 37.500 0.00 0.00 43.52 2.71
2615 3205 5.294060 GTGCAAGTCAACCATTTGAATGTTT 59.706 36.000 0.00 0.00 43.52 2.83
2616 3206 5.293814 TGCAAGTCAACCATTTGAATGTTTG 59.706 36.000 7.44 7.44 43.52 2.93
2617 3207 5.523188 GCAAGTCAACCATTTGAATGTTTGA 59.477 36.000 11.22 11.22 42.89 2.69
2620 3210 5.604758 TCAACCATTTGAATGTTTGACCA 57.395 34.783 11.22 0.00 41.11 4.02
2621 3211 5.982356 TCAACCATTTGAATGTTTGACCAA 58.018 33.333 11.22 0.00 41.11 3.67
2622 3212 6.047870 TCAACCATTTGAATGTTTGACCAAG 58.952 36.000 11.22 0.00 41.11 3.61
2623 3213 5.867903 ACCATTTGAATGTTTGACCAAGA 57.132 34.783 3.30 0.00 34.60 3.02
2624 3214 6.423776 ACCATTTGAATGTTTGACCAAGAT 57.576 33.333 3.30 0.00 34.60 2.40
2625 3215 6.829849 ACCATTTGAATGTTTGACCAAGATT 58.170 32.000 3.30 0.00 34.60 2.40
2626 3216 6.707161 ACCATTTGAATGTTTGACCAAGATTG 59.293 34.615 3.30 0.00 34.60 2.67
2627 3217 6.707161 CCATTTGAATGTTTGACCAAGATTGT 59.293 34.615 3.30 0.00 34.60 2.71
2628 3218 7.871973 CCATTTGAATGTTTGACCAAGATTGTA 59.128 33.333 3.30 0.00 34.60 2.41
2629 3219 8.918658 CATTTGAATGTTTGACCAAGATTGTAG 58.081 33.333 0.00 0.00 28.47 2.74
2630 3220 7.815840 TTGAATGTTTGACCAAGATTGTAGA 57.184 32.000 0.00 0.00 28.47 2.59
2631 3221 7.815840 TGAATGTTTGACCAAGATTGTAGAA 57.184 32.000 0.00 0.00 28.47 2.10
2632 3222 8.408043 TGAATGTTTGACCAAGATTGTAGAAT 57.592 30.769 0.00 0.00 28.47 2.40
2633 3223 9.513906 TGAATGTTTGACCAAGATTGTAGAATA 57.486 29.630 0.00 0.00 28.47 1.75
2662 3252 9.964354 ATAACAATATCTGCAATGCCTAATAGA 57.036 29.630 1.53 0.00 0.00 1.98
2663 3253 8.874744 AACAATATCTGCAATGCCTAATAGAT 57.125 30.769 1.53 6.51 0.00 1.98
2664 3254 9.964354 AACAATATCTGCAATGCCTAATAGATA 57.036 29.630 12.54 12.54 33.28 1.98
2665 3255 9.964354 ACAATATCTGCAATGCCTAATAGATAA 57.036 29.630 13.69 2.11 32.72 1.75
2698 3288 9.865321 AAACTACTTTTCATGATGGATCAAATG 57.135 29.630 0.00 0.00 40.69 2.32
2699 3289 8.812513 ACTACTTTTCATGATGGATCAAATGA 57.187 30.769 0.00 0.00 40.69 2.57
2700 3290 9.417561 ACTACTTTTCATGATGGATCAAATGAT 57.582 29.630 0.00 0.00 40.69 2.45
2759 3349 3.724508 AAAATCGGTCAAACATGCACA 57.275 38.095 0.00 0.00 0.00 4.57
2760 3350 3.940209 AAATCGGTCAAACATGCACAT 57.060 38.095 0.00 0.00 0.00 3.21
2761 3351 2.925578 ATCGGTCAAACATGCACATG 57.074 45.000 9.06 9.06 44.15 3.21
2776 3366 7.640616 CATGCACATGTTTGACTTATGAAAA 57.359 32.000 0.00 0.00 34.23 2.29
2777 3367 8.074474 CATGCACATGTTTGACTTATGAAAAA 57.926 30.769 0.00 0.00 34.23 1.94
2804 3394 9.333724 ACAAATACACCTTATATAAAGGAACGG 57.666 33.333 10.67 6.38 39.81 4.44
2805 3395 9.550406 CAAATACACCTTATATAAAGGAACGGA 57.450 33.333 10.67 0.00 39.81 4.69
2806 3396 9.774413 AAATACACCTTATATAAAGGAACGGAG 57.226 33.333 10.67 5.47 39.81 4.63
2807 3397 8.716674 ATACACCTTATATAAAGGAACGGAGA 57.283 34.615 10.67 0.00 39.81 3.71
2808 3398 7.613551 ACACCTTATATAAAGGAACGGAGAT 57.386 36.000 10.67 0.00 39.81 2.75
2809 3399 8.716674 ACACCTTATATAAAGGAACGGAGATA 57.283 34.615 10.67 0.00 39.81 1.98
2810 3400 9.151177 ACACCTTATATAAAGGAACGGAGATAA 57.849 33.333 10.67 0.00 39.81 1.75
3213 4374 1.222936 CGGGCTTCTCCTCTTGCAT 59.777 57.895 0.00 0.00 34.39 3.96
3270 4436 1.670406 CACTCTCACAGCAGGCCAC 60.670 63.158 5.01 0.00 0.00 5.01
3421 6447 6.718454 CCTTGGCATATGGTTCAATAAGATCT 59.282 38.462 4.56 0.00 0.00 2.75
4018 7095 3.066291 TGTACACTTTGCCGGATGAAT 57.934 42.857 5.05 0.00 0.00 2.57
4019 7096 3.006940 TGTACACTTTGCCGGATGAATC 58.993 45.455 5.05 0.00 0.00 2.52
4020 7097 2.198827 ACACTTTGCCGGATGAATCA 57.801 45.000 5.05 0.00 0.00 2.57
4206 7286 6.368805 TCTATCATGTGACTGTATGGAGAGT 58.631 40.000 0.00 0.00 0.00 3.24
4578 7767 3.806949 TTGCTACCAGGTTCCAGAAAT 57.193 42.857 0.00 0.00 0.00 2.17
4855 8057 4.942483 ACTCAACGACTACTATAGCAGTGT 59.058 41.667 10.46 6.41 38.24 3.55
5202 14970 5.010922 TGCATCATTTGTTCCTAAAGTTGCT 59.989 36.000 0.00 0.00 0.00 3.91
5396 15183 1.196766 TCCTCACCTGACAGCAGCAT 61.197 55.000 0.00 0.00 40.91 3.79
5814 15640 8.024146 GCTAATTAGCTGTCTCTTATTTAGGC 57.976 38.462 26.79 0.00 45.62 3.93
5839 15665 5.047235 GTGCAATTATCTATACTCCCTCCGT 60.047 44.000 0.00 0.00 0.00 4.69
5856 15682 4.444306 CCTCCGTCCCAAAATATAAGAGCA 60.444 45.833 0.00 0.00 0.00 4.26
5857 15683 5.304686 TCCGTCCCAAAATATAAGAGCAT 57.695 39.130 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 5.045869 ACCTGGATTCCTTTTCTCATTCGTA 60.046 40.000 0.00 0.00 0.00 3.43
25 27 6.596309 ATCTTCAAACCTGGATTCCTTTTC 57.404 37.500 0.00 0.00 0.00 2.29
30 32 5.126779 GTCCTATCTTCAAACCTGGATTCC 58.873 45.833 0.00 0.00 0.00 3.01
39 41 7.716998 ACATACCATCATGTCCTATCTTCAAAC 59.283 37.037 0.00 0.00 33.89 2.93
40 42 7.805163 ACATACCATCATGTCCTATCTTCAAA 58.195 34.615 0.00 0.00 33.89 2.69
49 51 8.659527 TCAACATATTACATACCATCATGTCCT 58.340 33.333 0.00 0.00 39.77 3.85
51 53 9.494271 AGTCAACATATTACATACCATCATGTC 57.506 33.333 0.00 0.00 39.77 3.06
55 57 9.981114 CAGTAGTCAACATATTACATACCATCA 57.019 33.333 0.00 0.00 0.00 3.07
77 87 7.169140 CGTCAAGTGCATTTATATGTAGCAGTA 59.831 37.037 0.00 0.00 37.85 2.74
79 89 6.018751 ACGTCAAGTGCATTTATATGTAGCAG 60.019 38.462 0.00 0.00 35.66 4.24
81 91 6.129393 CACGTCAAGTGCATTTATATGTAGC 58.871 40.000 0.00 0.00 44.72 3.58
101 111 7.549134 TGATAGCAGAAAAAGATCAATACACGT 59.451 33.333 0.00 0.00 0.00 4.49
102 112 7.848051 GTGATAGCAGAAAAAGATCAATACACG 59.152 37.037 0.00 0.00 0.00 4.49
103 113 8.125448 GGTGATAGCAGAAAAAGATCAATACAC 58.875 37.037 0.00 0.00 0.00 2.90
107 117 7.778853 AGATGGTGATAGCAGAAAAAGATCAAT 59.221 33.333 0.00 0.00 0.00 2.57
112 122 6.715280 AGAAGATGGTGATAGCAGAAAAAGA 58.285 36.000 0.00 0.00 0.00 2.52
113 123 6.822676 AGAGAAGATGGTGATAGCAGAAAAAG 59.177 38.462 0.00 0.00 0.00 2.27
121 131 4.282957 TCATCCAGAGAAGATGGTGATAGC 59.717 45.833 1.25 0.00 41.25 2.97
244 257 7.266922 ACTTTCGAGCAAAACCATACTAAAA 57.733 32.000 0.00 0.00 0.00 1.52
245 258 6.870971 ACTTTCGAGCAAAACCATACTAAA 57.129 33.333 0.00 0.00 0.00 1.85
248 261 5.995897 AGTTACTTTCGAGCAAAACCATACT 59.004 36.000 0.00 0.00 0.00 2.12
249 262 6.237313 AGTTACTTTCGAGCAAAACCATAC 57.763 37.500 0.00 0.00 0.00 2.39
250 263 6.870971 AAGTTACTTTCGAGCAAAACCATA 57.129 33.333 0.00 0.00 0.00 2.74
251 264 5.767816 AAGTTACTTTCGAGCAAAACCAT 57.232 34.783 0.00 0.00 0.00 3.55
253 266 5.049612 AGCTAAGTTACTTTCGAGCAAAACC 60.050 40.000 17.29 0.00 32.28 3.27
254 267 5.986936 AGCTAAGTTACTTTCGAGCAAAAC 58.013 37.500 17.29 0.00 32.28 2.43
259 272 9.245962 TCATTATTAGCTAAGTTACTTTCGAGC 57.754 33.333 12.54 6.59 0.00 5.03
280 293 6.970043 GGTTGCTGCATATAAAAACGTCATTA 59.030 34.615 1.84 0.00 0.00 1.90
285 298 5.878116 TCTAGGTTGCTGCATATAAAAACGT 59.122 36.000 1.84 0.87 0.00 3.99
287 300 7.985476 TCTTCTAGGTTGCTGCATATAAAAAC 58.015 34.615 1.84 0.00 0.00 2.43
299 312 2.028020 CGGAGGTTTCTTCTAGGTTGCT 60.028 50.000 0.00 0.00 0.00 3.91
316 329 0.389391 ATTATCGTCCAGTGGCGGAG 59.611 55.000 20.79 6.45 35.10 4.63
317 330 0.828022 AATTATCGTCCAGTGGCGGA 59.172 50.000 20.79 13.54 0.00 5.54
355 368 1.134159 GCAGCATGGACTCAAGGAGAT 60.134 52.381 0.00 0.00 35.86 2.75
375 388 2.563297 TGCTTCTGCATTGCTCTGG 58.437 52.632 10.49 0.00 45.31 3.86
440 454 7.817478 GGTGGAATCCTTTACCAAATTTGTAAG 59.183 37.037 16.73 14.92 35.40 2.34
463 477 0.179105 TTTGTTTGCTGCTGCTGGTG 60.179 50.000 17.00 0.00 40.48 4.17
464 478 0.754472 ATTTGTTTGCTGCTGCTGGT 59.246 45.000 17.00 0.00 40.48 4.00
465 479 1.144969 CATTTGTTTGCTGCTGCTGG 58.855 50.000 17.00 0.00 40.48 4.85
466 480 1.860676 ACATTTGTTTGCTGCTGCTG 58.139 45.000 17.00 7.12 40.48 4.41
467 481 2.607631 AACATTTGTTTGCTGCTGCT 57.392 40.000 17.00 0.00 40.48 4.24
468 482 3.678915 AAAACATTTGTTTGCTGCTGC 57.321 38.095 8.89 8.89 46.47 5.25
515 552 5.490139 ACACAGCACATAAATACATCAGC 57.510 39.130 0.00 0.00 0.00 4.26
519 556 7.389803 TGCTTAACACAGCACATAAATACAT 57.610 32.000 0.00 0.00 45.14 2.29
561 641 8.480643 TTTTCTCTAAGCAGTTTAGTATGAGC 57.519 34.615 4.14 0.00 39.83 4.26
578 658 2.455674 TCGCTGCAGCTTTTTCTCTA 57.544 45.000 34.22 7.22 39.32 2.43
579 659 1.818642 ATCGCTGCAGCTTTTTCTCT 58.181 45.000 34.22 8.51 39.32 3.10
595 675 6.732154 AGATGTTTTTATGCAGGATGAATCG 58.268 36.000 0.00 0.00 39.69 3.34
596 676 8.295288 CCTAGATGTTTTTATGCAGGATGAATC 58.705 37.037 0.00 0.00 39.69 2.52
616 696 7.200434 AGAACACCACAATTATCACCTAGAT 57.800 36.000 0.00 0.00 40.86 1.98
618 698 7.687941 AAAGAACACCACAATTATCACCTAG 57.312 36.000 0.00 0.00 0.00 3.02
621 701 8.573035 TCTAAAAAGAACACCACAATTATCACC 58.427 33.333 0.00 0.00 0.00 4.02
631 711 3.568430 CCCAGGTCTAAAAAGAACACCAC 59.432 47.826 0.00 0.00 0.00 4.16
632 712 3.460340 TCCCAGGTCTAAAAAGAACACCA 59.540 43.478 0.00 0.00 0.00 4.17
664 744 5.705441 CCCTGCACTGTAATTAGAAGTTTCA 59.295 40.000 0.00 1.13 0.00 2.69
674 754 4.862641 AACCTATCCCTGCACTGTAATT 57.137 40.909 0.00 0.00 0.00 1.40
675 755 4.969359 AGTAACCTATCCCTGCACTGTAAT 59.031 41.667 0.00 0.00 0.00 1.89
688 768 6.647067 CCTAAGCATGCTAACAGTAACCTATC 59.353 42.308 23.00 0.00 0.00 2.08
689 769 6.099845 ACCTAAGCATGCTAACAGTAACCTAT 59.900 38.462 23.00 2.44 0.00 2.57
690 770 5.424252 ACCTAAGCATGCTAACAGTAACCTA 59.576 40.000 23.00 4.40 0.00 3.08
691 771 4.225267 ACCTAAGCATGCTAACAGTAACCT 59.775 41.667 23.00 3.26 0.00 3.50
692 772 4.514401 ACCTAAGCATGCTAACAGTAACC 58.486 43.478 23.00 0.00 0.00 2.85
693 773 7.280205 ACAATACCTAAGCATGCTAACAGTAAC 59.720 37.037 23.00 0.00 0.00 2.50
694 774 7.335627 ACAATACCTAAGCATGCTAACAGTAA 58.664 34.615 23.00 8.86 0.00 2.24
695 775 6.884832 ACAATACCTAAGCATGCTAACAGTA 58.115 36.000 23.00 19.25 0.00 2.74
696 776 5.745227 ACAATACCTAAGCATGCTAACAGT 58.255 37.500 23.00 17.75 0.00 3.55
697 777 6.683974 AACAATACCTAAGCATGCTAACAG 57.316 37.500 23.00 17.52 0.00 3.16
698 778 8.568676 TTTAACAATACCTAAGCATGCTAACA 57.431 30.769 23.00 8.53 0.00 2.41
726 806 8.960591 CCTGATTAGGTACATTCTGAAAACAAT 58.039 33.333 0.00 0.00 39.39 2.71
727 807 8.160765 TCCTGATTAGGTACATTCTGAAAACAA 58.839 33.333 3.04 0.00 44.88 2.83
728 808 7.685481 TCCTGATTAGGTACATTCTGAAAACA 58.315 34.615 3.04 0.00 44.88 2.83
729 809 8.041323 TCTCCTGATTAGGTACATTCTGAAAAC 58.959 37.037 3.04 0.00 44.88 2.43
730 810 8.041323 GTCTCCTGATTAGGTACATTCTGAAAA 58.959 37.037 3.04 0.00 44.88 2.29
731 811 7.400339 AGTCTCCTGATTAGGTACATTCTGAAA 59.600 37.037 3.04 0.00 44.88 2.69
732 812 6.897966 AGTCTCCTGATTAGGTACATTCTGAA 59.102 38.462 3.04 0.00 44.88 3.02
736 816 6.716934 TCAGTCTCCTGATTAGGTACATTC 57.283 41.667 3.04 0.00 42.80 2.67
738 818 5.958380 TGTTCAGTCTCCTGATTAGGTACAT 59.042 40.000 3.04 0.00 46.80 2.29
743 823 4.081198 AGCTTGTTCAGTCTCCTGATTAGG 60.081 45.833 0.00 0.00 46.80 2.69
754 834 6.036517 CAGGTGATTATACAGCTTGTTCAGTC 59.963 42.308 0.00 0.00 44.52 3.51
756 836 5.295292 CCAGGTGATTATACAGCTTGTTCAG 59.705 44.000 0.00 0.00 44.52 3.02
759 839 5.179452 ACCAGGTGATTATACAGCTTGTT 57.821 39.130 0.00 0.00 44.52 2.83
761 841 7.807977 AAATACCAGGTGATTATACAGCTTG 57.192 36.000 0.76 0.00 44.52 4.01
787 867 8.317679 ACTATATAGGAATCAGACAGGCATTTC 58.682 37.037 14.25 0.00 0.00 2.17
793 873 7.671819 TCCAAGACTATATAGGAATCAGACAGG 59.328 40.741 14.25 2.80 0.00 4.00
823 903 5.570320 AGTGGCTTTACAGTATGATTTGGT 58.430 37.500 0.00 0.00 39.69 3.67
828 908 5.339008 TTCGAGTGGCTTTACAGTATGAT 57.661 39.130 0.00 0.00 39.69 2.45
842 922 0.905357 AGGGACCAAGATTCGAGTGG 59.095 55.000 0.00 5.31 38.46 4.00
843 923 1.134670 GGAGGGACCAAGATTCGAGTG 60.135 57.143 0.00 0.00 38.79 3.51
844 924 1.196012 GGAGGGACCAAGATTCGAGT 58.804 55.000 0.00 0.00 38.79 4.18
845 925 0.103208 CGGAGGGACCAAGATTCGAG 59.897 60.000 0.00 0.00 38.90 4.04
847 927 0.179108 GACGGAGGGACCAAGATTCG 60.179 60.000 0.00 0.00 38.90 3.34
854 934 0.547075 CTCTCTAGACGGAGGGACCA 59.453 60.000 0.00 0.00 35.97 4.02
857 937 0.464870 CGACTCTCTAGACGGAGGGA 59.535 60.000 12.30 0.00 37.28 4.20
859 939 0.179067 AGCGACTCTCTAGACGGAGG 60.179 60.000 12.30 0.00 40.53 4.30
885 965 2.804931 GCGGTGTTGCAATTCGCC 60.805 61.111 23.76 17.35 41.33 5.54
886 966 3.165318 CGCGGTGTTGCAATTCGC 61.165 61.111 24.11 24.11 42.51 4.70
887 967 0.454285 ATTCGCGGTGTTGCAATTCG 60.454 50.000 6.13 8.48 34.15 3.34
890 970 1.212490 CCATTCGCGGTGTTGCAAT 59.788 52.632 6.13 0.00 34.15 3.56
892 972 4.036804 GCCATTCGCGGTGTTGCA 62.037 61.111 6.13 0.00 34.15 4.08
893 973 3.951655 CTGCCATTCGCGGTGTTGC 62.952 63.158 6.13 6.50 42.08 4.17
894 974 2.176546 CTGCCATTCGCGGTGTTG 59.823 61.111 6.13 0.00 42.08 3.33
895 975 3.055719 CCTGCCATTCGCGGTGTT 61.056 61.111 6.13 0.00 42.92 3.32
901 981 4.802051 TGGAGGCCTGCCATTCGC 62.802 66.667 22.95 0.00 38.92 4.70
902 982 1.895707 GATGGAGGCCTGCCATTCG 60.896 63.158 27.38 0.00 45.81 3.34
903 983 0.536915 GAGATGGAGGCCTGCCATTC 60.537 60.000 27.38 22.45 45.81 2.67
904 984 1.284111 TGAGATGGAGGCCTGCCATT 61.284 55.000 27.38 19.92 45.81 3.16
906 986 1.695239 ATGAGATGGAGGCCTGCCA 60.695 57.895 22.95 22.14 40.24 4.92
907 987 1.072852 GATGAGATGGAGGCCTGCC 59.927 63.158 22.95 17.17 0.00 4.85
908 988 0.035176 GAGATGAGATGGAGGCCTGC 59.965 60.000 18.95 18.95 0.00 4.85
909 989 1.719529 AGAGATGAGATGGAGGCCTG 58.280 55.000 12.00 0.00 0.00 4.85
910 990 2.493099 AAGAGATGAGATGGAGGCCT 57.507 50.000 3.86 3.86 0.00 5.19
911 991 2.705127 AGAAAGAGATGAGATGGAGGCC 59.295 50.000 0.00 0.00 0.00 5.19
912 992 3.642848 AGAGAAAGAGATGAGATGGAGGC 59.357 47.826 0.00 0.00 0.00 4.70
913 993 7.233144 TGAATAGAGAAAGAGATGAGATGGAGG 59.767 40.741 0.00 0.00 0.00 4.30
914 994 8.180706 TGAATAGAGAAAGAGATGAGATGGAG 57.819 38.462 0.00 0.00 0.00 3.86
915 995 8.586744 CATGAATAGAGAAAGAGATGAGATGGA 58.413 37.037 0.00 0.00 0.00 3.41
916 996 8.586744 TCATGAATAGAGAAAGAGATGAGATGG 58.413 37.037 0.00 0.00 0.00 3.51
917 997 9.414295 GTCATGAATAGAGAAAGAGATGAGATG 57.586 37.037 0.00 0.00 0.00 2.90
918 998 9.370930 AGTCATGAATAGAGAAAGAGATGAGAT 57.629 33.333 0.00 0.00 0.00 2.75
919 999 8.631797 CAGTCATGAATAGAGAAAGAGATGAGA 58.368 37.037 0.00 0.00 0.00 3.27
920 1000 7.868922 CCAGTCATGAATAGAGAAAGAGATGAG 59.131 40.741 0.00 0.00 0.00 2.90
921 1001 7.686371 GCCAGTCATGAATAGAGAAAGAGATGA 60.686 40.741 0.00 0.00 0.00 2.92
922 1002 6.424509 GCCAGTCATGAATAGAGAAAGAGATG 59.575 42.308 0.00 0.00 0.00 2.90
923 1003 6.099413 TGCCAGTCATGAATAGAGAAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
924 1004 5.423290 TGCCAGTCATGAATAGAGAAAGAGA 59.577 40.000 0.00 0.00 0.00 3.10
925 1005 5.668471 TGCCAGTCATGAATAGAGAAAGAG 58.332 41.667 0.00 0.00 0.00 2.85
926 1006 5.396101 CCTGCCAGTCATGAATAGAGAAAGA 60.396 44.000 0.00 0.00 0.00 2.52
927 1007 4.815308 CCTGCCAGTCATGAATAGAGAAAG 59.185 45.833 0.00 0.00 0.00 2.62
928 1008 4.774124 CCTGCCAGTCATGAATAGAGAAA 58.226 43.478 0.00 0.00 0.00 2.52
929 1009 3.432749 GCCTGCCAGTCATGAATAGAGAA 60.433 47.826 0.00 0.00 0.00 2.87
930 1010 2.103771 GCCTGCCAGTCATGAATAGAGA 59.896 50.000 0.00 0.00 0.00 3.10
931 1011 2.492012 GCCTGCCAGTCATGAATAGAG 58.508 52.381 0.00 0.00 0.00 2.43
932 1012 1.141657 GGCCTGCCAGTCATGAATAGA 59.858 52.381 2.58 0.00 35.81 1.98
933 1013 1.134007 TGGCCTGCCAGTCATGAATAG 60.134 52.381 6.80 0.00 41.89 1.73
934 1014 0.918258 TGGCCTGCCAGTCATGAATA 59.082 50.000 6.80 0.00 41.89 1.75
935 1015 1.693034 TGGCCTGCCAGTCATGAAT 59.307 52.632 6.80 0.00 41.89 2.57
954 1034 0.527565 AAACACCGTCGTATAGCCGT 59.472 50.000 0.00 0.00 0.00 5.68
960 1040 3.128242 CAGAGGTAGAAACACCGTCGTAT 59.872 47.826 0.00 0.00 43.84 3.06
970 1050 4.930405 GCTTGTAGAACCAGAGGTAGAAAC 59.070 45.833 0.00 0.00 33.12 2.78
1238 1490 8.752187 AGGCAAAATCTTCTTTTATAGCATTGA 58.248 29.630 0.00 0.00 0.00 2.57
1255 1508 3.942130 AAGCACCTAACAGGCAAAATC 57.058 42.857 0.00 0.00 39.63 2.17
1468 1732 0.913934 TATCAGAGTGCCAGGCCCAA 60.914 55.000 9.64 0.00 0.00 4.12
1495 1759 6.405278 AAAGAAAAAGGAATGGTGGTAGTG 57.595 37.500 0.00 0.00 0.00 2.74
1659 1982 2.427506 CCTGTTAGACTGGTTGCTTCC 58.572 52.381 0.00 0.00 33.14 3.46
1813 2144 5.146010 ACAGAAGCTCCTTAGAAAGACAG 57.854 43.478 0.00 0.00 0.00 3.51
1962 2293 1.141019 CATGGCATGCTGCTTGTCC 59.859 57.895 18.92 16.33 44.28 4.02
1965 2296 1.437573 CCTCATGGCATGCTGCTTG 59.562 57.895 22.56 10.85 44.28 4.01
2133 2470 0.868406 GGCAACACACAGAGCAGTAC 59.132 55.000 0.00 0.00 0.00 2.73
2388 2952 3.935203 ACATCCATTTGAGCGACAAGTAG 59.065 43.478 0.00 0.00 39.77 2.57
2434 3014 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2481 3061 9.681692 CATATCAACACAGAAGATCAACAAAAA 57.318 29.630 0.00 0.00 0.00 1.94
2554 3144 5.070580 ACCTTATATTCTGAAACGGAGGGAG 59.929 44.000 13.92 0.00 0.00 4.30
2555 3145 4.966805 ACCTTATATTCTGAAACGGAGGGA 59.033 41.667 13.92 0.00 0.00 4.20
2556 3146 5.057149 CACCTTATATTCTGAAACGGAGGG 58.943 45.833 13.92 7.31 0.00 4.30
2557 3147 5.671493 ACACCTTATATTCTGAAACGGAGG 58.329 41.667 0.00 3.29 0.00 4.30
2558 3148 8.765219 CAATACACCTTATATTCTGAAACGGAG 58.235 37.037 0.00 0.00 0.00 4.63
2559 3149 7.713507 CCAATACACCTTATATTCTGAAACGGA 59.286 37.037 0.00 0.00 0.00 4.69
2560 3150 7.497909 ACCAATACACCTTATATTCTGAAACGG 59.502 37.037 0.00 0.00 0.00 4.44
2561 3151 8.433421 ACCAATACACCTTATATTCTGAAACG 57.567 34.615 0.00 0.00 0.00 3.60
2565 3155 9.104965 CGAAAACCAATACACCTTATATTCTGA 57.895 33.333 0.00 0.00 0.00 3.27
2566 3156 8.889717 ACGAAAACCAATACACCTTATATTCTG 58.110 33.333 0.00 0.00 0.00 3.02
2567 3157 8.889717 CACGAAAACCAATACACCTTATATTCT 58.110 33.333 0.00 0.00 0.00 2.40
2568 3158 7.642586 GCACGAAAACCAATACACCTTATATTC 59.357 37.037 0.00 0.00 0.00 1.75
2569 3159 7.121463 TGCACGAAAACCAATACACCTTATATT 59.879 33.333 0.00 0.00 0.00 1.28
2570 3160 6.600032 TGCACGAAAACCAATACACCTTATAT 59.400 34.615 0.00 0.00 0.00 0.86
2571 3161 5.938710 TGCACGAAAACCAATACACCTTATA 59.061 36.000 0.00 0.00 0.00 0.98
2572 3162 4.762765 TGCACGAAAACCAATACACCTTAT 59.237 37.500 0.00 0.00 0.00 1.73
2573 3163 4.135306 TGCACGAAAACCAATACACCTTA 58.865 39.130 0.00 0.00 0.00 2.69
2574 3164 2.952978 TGCACGAAAACCAATACACCTT 59.047 40.909 0.00 0.00 0.00 3.50
2575 3165 2.577700 TGCACGAAAACCAATACACCT 58.422 42.857 0.00 0.00 0.00 4.00
2576 3166 3.243267 ACTTGCACGAAAACCAATACACC 60.243 43.478 0.00 0.00 0.00 4.16
2577 3167 3.959943 ACTTGCACGAAAACCAATACAC 58.040 40.909 0.00 0.00 0.00 2.90
2578 3168 3.628032 TGACTTGCACGAAAACCAATACA 59.372 39.130 0.00 0.00 0.00 2.29
2579 3169 4.217754 TGACTTGCACGAAAACCAATAC 57.782 40.909 0.00 0.00 0.00 1.89
2580 3170 4.498345 GGTTGACTTGCACGAAAACCAATA 60.498 41.667 19.43 0.00 37.57 1.90
2581 3171 3.443976 GTTGACTTGCACGAAAACCAAT 58.556 40.909 0.00 0.00 0.00 3.16
2582 3172 2.416162 GGTTGACTTGCACGAAAACCAA 60.416 45.455 19.43 5.35 37.57 3.67
2583 3173 1.133407 GGTTGACTTGCACGAAAACCA 59.867 47.619 19.43 0.59 37.57 3.67
2584 3174 1.133407 TGGTTGACTTGCACGAAAACC 59.867 47.619 18.29 18.29 38.02 3.27
2585 3175 2.553079 TGGTTGACTTGCACGAAAAC 57.447 45.000 0.00 0.93 0.00 2.43
2586 3176 3.791973 AATGGTTGACTTGCACGAAAA 57.208 38.095 0.00 0.00 0.00 2.29
2587 3177 3.129462 TCAAATGGTTGACTTGCACGAAA 59.871 39.130 0.00 0.00 38.88 3.46
2588 3178 2.685388 TCAAATGGTTGACTTGCACGAA 59.315 40.909 0.00 0.00 38.88 3.85
2589 3179 2.293170 TCAAATGGTTGACTTGCACGA 58.707 42.857 0.00 0.00 38.88 4.35
2590 3180 2.772568 TCAAATGGTTGACTTGCACG 57.227 45.000 0.00 0.00 38.88 5.34
2591 3181 4.370917 ACATTCAAATGGTTGACTTGCAC 58.629 39.130 7.58 0.00 43.52 4.57
2592 3182 4.669206 ACATTCAAATGGTTGACTTGCA 57.331 36.364 7.58 0.00 43.52 4.08
2593 3183 5.989551 AAACATTCAAATGGTTGACTTGC 57.010 34.783 5.24 0.00 44.21 4.01
2600 3190 6.232581 TCTTGGTCAAACATTCAAATGGTT 57.767 33.333 7.58 4.05 46.69 3.67
2601 3191 5.867903 TCTTGGTCAAACATTCAAATGGT 57.132 34.783 7.58 0.00 40.70 3.55
2602 3192 6.707161 ACAATCTTGGTCAAACATTCAAATGG 59.293 34.615 7.58 0.00 40.70 3.16
2603 3193 7.718272 ACAATCTTGGTCAAACATTCAAATG 57.282 32.000 1.20 1.20 42.10 2.32
2604 3194 8.859090 TCTACAATCTTGGTCAAACATTCAAAT 58.141 29.630 0.00 0.00 0.00 2.32
2605 3195 8.231692 TCTACAATCTTGGTCAAACATTCAAA 57.768 30.769 0.00 0.00 0.00 2.69
2606 3196 7.815840 TCTACAATCTTGGTCAAACATTCAA 57.184 32.000 0.00 0.00 0.00 2.69
2607 3197 7.815840 TTCTACAATCTTGGTCAAACATTCA 57.184 32.000 0.00 0.00 0.00 2.57
2636 3226 9.964354 TCTATTAGGCATTGCAGATATTGTTAT 57.036 29.630 11.39 0.00 0.00 1.89
2637 3227 9.964354 ATCTATTAGGCATTGCAGATATTGTTA 57.036 29.630 11.39 0.00 0.00 2.41
2638 3228 8.874744 ATCTATTAGGCATTGCAGATATTGTT 57.125 30.769 11.39 0.00 0.00 2.83
2639 3229 9.964354 TTATCTATTAGGCATTGCAGATATTGT 57.036 29.630 11.39 0.00 0.00 2.71
2672 3262 9.865321 CATTTGATCCATCATGAAAAGTAGTTT 57.135 29.630 0.00 0.00 36.56 2.66
2673 3263 9.246670 TCATTTGATCCATCATGAAAAGTAGTT 57.753 29.630 0.00 0.00 36.56 2.24
2674 3264 8.812513 TCATTTGATCCATCATGAAAAGTAGT 57.187 30.769 0.00 0.00 36.56 2.73
2738 3328 4.052159 TGTGCATGTTTGACCGATTTTT 57.948 36.364 0.00 0.00 0.00 1.94
2739 3329 3.724508 TGTGCATGTTTGACCGATTTT 57.275 38.095 0.00 0.00 0.00 1.82
2740 3330 3.577667 CATGTGCATGTTTGACCGATTT 58.422 40.909 4.13 0.00 34.23 2.17
2741 3331 3.220507 CATGTGCATGTTTGACCGATT 57.779 42.857 4.13 0.00 34.23 3.34
2742 3332 2.925578 CATGTGCATGTTTGACCGAT 57.074 45.000 4.13 0.00 34.23 4.18
2752 3342 7.640616 TTTTCATAAGTCAAACATGTGCATG 57.359 32.000 10.31 10.31 44.15 4.06
2778 3368 9.333724 CCGTTCCTTTATATAAGGTGTATTTGT 57.666 33.333 4.13 0.00 38.55 2.83
2779 3369 9.550406 TCCGTTCCTTTATATAAGGTGTATTTG 57.450 33.333 4.13 0.00 38.55 2.32
2780 3370 9.774413 CTCCGTTCCTTTATATAAGGTGTATTT 57.226 33.333 4.13 0.00 38.55 1.40
2781 3371 9.151177 TCTCCGTTCCTTTATATAAGGTGTATT 57.849 33.333 4.13 0.00 38.55 1.89
2782 3372 8.716674 TCTCCGTTCCTTTATATAAGGTGTAT 57.283 34.615 4.13 0.00 38.55 2.29
2783 3373 8.716674 ATCTCCGTTCCTTTATATAAGGTGTA 57.283 34.615 4.13 0.00 38.55 2.90
2784 3374 7.613551 ATCTCCGTTCCTTTATATAAGGTGT 57.386 36.000 4.13 0.00 38.55 4.16
2795 3385 8.466798 CCAACAAAATATTATCTCCGTTCCTTT 58.533 33.333 0.00 0.00 0.00 3.11
2796 3386 7.614192 ACCAACAAAATATTATCTCCGTTCCTT 59.386 33.333 0.00 0.00 0.00 3.36
2797 3387 7.116736 ACCAACAAAATATTATCTCCGTTCCT 58.883 34.615 0.00 0.00 0.00 3.36
2798 3388 7.329588 ACCAACAAAATATTATCTCCGTTCC 57.670 36.000 0.00 0.00 0.00 3.62
2799 3389 7.700656 CCAACCAACAAAATATTATCTCCGTTC 59.299 37.037 0.00 0.00 0.00 3.95
2800 3390 7.177744 ACCAACCAACAAAATATTATCTCCGTT 59.822 33.333 0.00 0.00 0.00 4.44
2801 3391 6.661805 ACCAACCAACAAAATATTATCTCCGT 59.338 34.615 0.00 0.00 0.00 4.69
2802 3392 7.095695 ACCAACCAACAAAATATTATCTCCG 57.904 36.000 0.00 0.00 0.00 4.63
2811 3401 9.804758 CACTTTTACTAACCAACCAACAAAATA 57.195 29.630 0.00 0.00 0.00 1.40
2812 3402 8.315482 ACACTTTTACTAACCAACCAACAAAAT 58.685 29.630 0.00 0.00 0.00 1.82
3213 4374 0.545309 AGGAGCACCAAGGAGCAGTA 60.545 55.000 11.05 0.00 38.94 2.74
3295 4464 2.480419 CGAACTTGCCGTTTCTTGAGAT 59.520 45.455 0.00 0.00 35.56 2.75
4018 7095 4.202111 TGAGACAAACACAGAAGACGATGA 60.202 41.667 0.00 0.00 0.00 2.92
4019 7096 4.051237 TGAGACAAACACAGAAGACGATG 58.949 43.478 0.00 0.00 0.00 3.84
4020 7097 4.051922 GTGAGACAAACACAGAAGACGAT 58.948 43.478 0.00 0.00 38.05 3.73
4206 7286 0.034896 GCGGTGACTTCTGGGAGAAA 59.965 55.000 0.00 0.00 33.19 2.52
4578 7767 5.418209 TCCGACCTTTGGTTTTCTTTTGTTA 59.582 36.000 0.00 0.00 35.25 2.41
5118 14886 1.961277 GCACTCACGACAACCCTGG 60.961 63.158 0.00 0.00 0.00 4.45
5147 14915 9.717942 GAAGTATGTTCTCTGGCTTAATATCAT 57.282 33.333 0.00 0.00 0.00 2.45
5202 14970 2.192861 CGCTGCCAACCCAAAGTCA 61.193 57.895 0.00 0.00 0.00 3.41
5396 15183 8.692710 AGTATTCGATATTCTGGTTACTGTTGA 58.307 33.333 0.00 0.00 0.00 3.18
5485 15281 4.385825 TCCAAGTTGAAGTCACCATGTAC 58.614 43.478 3.87 0.00 0.00 2.90
5814 15640 5.411781 GGAGGGAGTATAGATAATTGCACG 58.588 45.833 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.