Multiple sequence alignment - TraesCS1B01G322500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G322500 chr1B 100.000 3648 0 0 1 3648 547525735 547522088 0.000000e+00 6737.0
1 TraesCS1B01G322500 chr1B 95.455 44 2 0 3160 3203 481282681 481282724 1.820000e-08 71.3
2 TraesCS1B01G322500 chr1B 94.595 37 2 0 2306 2342 614506740 614506776 1.410000e-04 58.4
3 TraesCS1B01G322500 chr1A 91.116 3692 193 62 1 3638 502807520 502803910 0.000000e+00 4876.0
4 TraesCS1B01G322500 chr1A 94.595 37 2 0 2306 2342 544391486 544391522 1.410000e-04 58.4
5 TraesCS1B01G322500 chr1D 92.149 3439 168 41 1 3399 407162692 407159316 0.000000e+00 4761.0
6 TraesCS1B01G322500 chr1D 87.868 272 27 3 3379 3648 407159302 407159035 7.600000e-82 315.0
7 TraesCS1B01G322500 chr1D 79.902 204 28 13 2965 3162 166876700 166876896 1.770000e-28 137.0
8 TraesCS1B01G322500 chr1D 94.595 37 2 0 2306 2342 448788663 448788699 1.410000e-04 58.4
9 TraesCS1B01G322500 chr7D 84.756 164 25 0 1767 1930 417357560 417357397 8.100000e-37 165.0
10 TraesCS1B01G322500 chr7D 78.829 222 43 4 2949 3166 448341948 448341727 2.940000e-31 147.0
11 TraesCS1B01G322500 chr7D 78.846 208 40 4 2961 3165 133887546 133887340 1.770000e-28 137.0
12 TraesCS1B01G322500 chr7B 83.929 168 27 0 1767 1934 433064154 433063987 1.050000e-35 161.0
13 TraesCS1B01G322500 chr7A 83.537 164 27 0 1767 1930 482217921 482217758 1.750000e-33 154.0
14 TraesCS1B01G322500 chr3D 79.621 211 24 12 2965 3165 576887410 576887209 2.290000e-27 134.0
15 TraesCS1B01G322500 chr2A 76.779 267 43 12 2951 3203 735925711 735925972 8.220000e-27 132.0
16 TraesCS1B01G322500 chr2A 76.613 124 28 1 1868 1991 661082847 661082969 2.350000e-07 67.6
17 TraesCS1B01G322500 chr5B 78.440 218 34 10 2951 3162 589664365 589664575 2.960000e-26 130.0
18 TraesCS1B01G322500 chr4B 77.447 235 40 12 2941 3166 34048696 34048926 1.060000e-25 128.0
19 TraesCS1B01G322500 chr2B 77.489 231 39 12 2941 3165 673190197 673189974 3.820000e-25 126.0
20 TraesCS1B01G322500 chr2D 94.643 56 3 0 306 361 139475124 139475069 1.800000e-13 87.9
21 TraesCS1B01G322500 chr2D 89.583 48 5 0 317 364 229471354 229471401 1.090000e-05 62.1
22 TraesCS1B01G322500 chr6A 95.556 45 2 0 3159 3203 521658375 521658419 5.050000e-09 73.1
23 TraesCS1B01G322500 chr6B 97.059 34 1 0 370 403 571738431 571738398 1.410000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G322500 chr1B 547522088 547525735 3647 True 6737 6737 100.0000 1 3648 1 chr1B.!!$R1 3647
1 TraesCS1B01G322500 chr1A 502803910 502807520 3610 True 4876 4876 91.1160 1 3638 1 chr1A.!!$R1 3637
2 TraesCS1B01G322500 chr1D 407159035 407162692 3657 True 2538 4761 90.0085 1 3648 2 chr1D.!!$R1 3647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 856 0.614415 ACTGTCCAGCTCCTCCTCTG 60.614 60.000 0.0 0.0 0.00 3.35 F
965 1013 0.723981 GAGCTGAATCGAGCCAACAC 59.276 55.000 0.0 0.0 40.08 3.32 F
2073 2129 1.334869 CGCACCCATTTCATTCCTAGC 59.665 52.381 0.0 0.0 0.00 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1718 1.001633 CAGTAGTACGTGGCTGGGTTT 59.998 52.381 0.0 0.0 0.00 3.27 R
2133 2197 1.005275 CTCCCGATGCTGCGATGAT 60.005 57.895 0.0 0.0 0.00 2.45 R
3610 3727 0.388520 CGACAGAGATGCGTGGAACA 60.389 55.000 0.0 0.0 35.74 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 349 1.380524 GAGGATCCTCTGACGTTCGA 58.619 55.000 31.11 0.00 39.80 3.71
368 389 3.245016 ACTGACATGTGGGCCCATATATG 60.245 47.826 31.45 30.62 0.00 1.78
411 437 1.147824 CGGCAGAGGAATCCAGCAT 59.852 57.895 0.61 0.00 0.00 3.79
518 548 8.956426 TCCATTAATAGAAACCAAAAGCTACAG 58.044 33.333 0.00 0.00 0.00 2.74
527 557 8.691797 AGAAACCAAAAGCTACAGTTATTCAAA 58.308 29.630 0.00 0.00 0.00 2.69
628 658 0.737715 GGTAGCGAGCACAAGTCCAG 60.738 60.000 0.00 0.00 0.00 3.86
703 737 3.556306 ACCACCAGTCCACCACCG 61.556 66.667 0.00 0.00 0.00 4.94
762 796 4.350816 TGCCAGCCTATAAATCCATGTACT 59.649 41.667 0.00 0.00 0.00 2.73
775 809 1.313091 ATGTACTCGCGCTCCTCACA 61.313 55.000 5.56 3.39 0.00 3.58
817 856 0.614415 ACTGTCCAGCTCCTCCTCTG 60.614 60.000 0.00 0.00 0.00 3.35
820 859 1.079987 TCCAGCTCCTCCTCTGCTT 59.920 57.895 0.00 0.00 34.51 3.91
956 999 2.609427 TCCATCCTTGAGCTGAATCG 57.391 50.000 0.00 0.00 0.00 3.34
965 1013 0.723981 GAGCTGAATCGAGCCAACAC 59.276 55.000 0.00 0.00 40.08 3.32
1068 1116 2.676822 AGCTTCCTCTGCGACGGA 60.677 61.111 0.00 0.00 35.28 4.69
1139 1187 4.636435 CCACGCACCCGGACCTTT 62.636 66.667 0.73 0.00 39.22 3.11
1140 1188 2.344500 CACGCACCCGGACCTTTA 59.656 61.111 0.73 0.00 39.22 1.85
1296 1344 2.125106 ATCAAGGACTTCGGCGCC 60.125 61.111 19.07 19.07 0.00 6.53
1712 1768 6.940298 ACTGCTTCAAGCCTTTAACAGTATTA 59.060 34.615 7.01 0.00 41.51 0.98
1730 1786 8.491134 ACAGTATTATTAATGGCCAGTAAGTGA 58.509 33.333 27.65 17.13 0.00 3.41
1732 1788 9.507329 AGTATTATTAATGGCCAGTAAGTGATG 57.493 33.333 27.65 0.00 0.00 3.07
1749 1805 6.465439 AGTGATGGATAACTGACGTTGATA 57.535 37.500 0.00 0.00 34.59 2.15
2057 2113 2.742372 ACGGCATCAGGTTCGCAC 60.742 61.111 0.00 0.00 0.00 5.34
2061 2117 1.750399 GCATCAGGTTCGCACCCAT 60.750 57.895 0.00 0.00 45.63 4.00
2071 2127 3.013921 GTTCGCACCCATTTCATTCCTA 58.986 45.455 0.00 0.00 0.00 2.94
2073 2129 1.334869 CGCACCCATTTCATTCCTAGC 59.665 52.381 0.00 0.00 0.00 3.42
2106 2169 7.843490 TTCTTTATGTTGTATACACTCCAGC 57.157 36.000 4.68 0.00 40.19 4.85
2113 2176 2.696187 TGTATACACTCCAGCGGCATTA 59.304 45.455 0.08 0.00 0.00 1.90
2114 2177 3.323691 TGTATACACTCCAGCGGCATTAT 59.676 43.478 0.08 0.00 0.00 1.28
2115 2178 3.492102 ATACACTCCAGCGGCATTATT 57.508 42.857 1.45 0.00 0.00 1.40
2116 2179 2.128771 ACACTCCAGCGGCATTATTT 57.871 45.000 1.45 0.00 0.00 1.40
2117 2180 1.745087 ACACTCCAGCGGCATTATTTG 59.255 47.619 1.45 0.00 0.00 2.32
2133 2197 2.284754 TTTGCTGACATTGGGTGCTA 57.715 45.000 0.00 0.00 0.00 3.49
2170 2238 2.935481 CTGGGGAAGCAGGGGTCA 60.935 66.667 0.00 0.00 0.00 4.02
2344 2412 1.460504 TCGACCAGTACTACTGCCTG 58.539 55.000 10.36 0.91 44.63 4.85
2673 2741 4.955774 GTCACGCCGTGGGACGTT 62.956 66.667 18.32 0.00 41.32 3.99
2833 2905 5.056480 TGATTTGTGTGACAGTTACCAGAG 58.944 41.667 0.00 0.00 0.00 3.35
2834 2906 4.746535 TTTGTGTGACAGTTACCAGAGA 57.253 40.909 0.00 0.00 0.00 3.10
2875 2947 8.038944 TGTTCTGGAACTTCTGTTACCATATAC 58.961 37.037 13.54 0.00 41.67 1.47
2876 2948 7.973048 TCTGGAACTTCTGTTACCATATACT 57.027 36.000 0.00 0.00 36.19 2.12
2877 2949 9.483489 TTCTGGAACTTCTGTTACCATATACTA 57.517 33.333 0.00 0.00 36.19 1.82
2894 2966 9.666626 CCATATACTAGTACTTCTTTCTTGTCG 57.333 37.037 4.31 0.00 0.00 4.35
2899 2971 8.388484 ACTAGTACTTCTTTCTTGTCGACTTA 57.612 34.615 17.92 3.92 0.00 2.24
2900 2972 9.012161 ACTAGTACTTCTTTCTTGTCGACTTAT 57.988 33.333 17.92 0.00 0.00 1.73
3007 3081 2.503331 CAATGGCAGTACAAGGACACA 58.497 47.619 0.00 0.00 0.00 3.72
3008 3082 2.884012 CAATGGCAGTACAAGGACACAA 59.116 45.455 0.00 0.00 0.00 3.33
3018 3092 7.308589 GCAGTACAAGGACACAAGAAATAACAT 60.309 37.037 0.00 0.00 0.00 2.71
3053 3127 1.086067 TCGTAGACCACCTAGCGACG 61.086 60.000 0.00 0.00 31.20 5.12
3058 3132 1.134159 AGACCACCTAGCGACGACTAT 60.134 52.381 0.00 0.00 0.00 2.12
3066 3140 3.744942 CCTAGCGACGACTATAAGCACTA 59.255 47.826 0.00 0.00 0.00 2.74
3081 3155 1.003696 GCACTAGGGCAAGAAGAAGGT 59.996 52.381 13.43 0.00 0.00 3.50
3087 3161 0.823356 GGCAAGAAGAAGGTGCACCA 60.823 55.000 36.39 0.00 40.12 4.17
3101 3175 0.611618 GCACCACCATCATTGTCCCA 60.612 55.000 0.00 0.00 0.00 4.37
3108 3182 2.848694 ACCATCATTGTCCCACTCTCAT 59.151 45.455 0.00 0.00 0.00 2.90
3121 3195 1.205893 ACTCTCATCGAAGCCAGGAAC 59.794 52.381 0.00 0.00 0.00 3.62
3136 3210 4.315803 CCAGGAACACTTGTTGTAGTAGG 58.684 47.826 0.00 0.00 37.51 3.18
3139 3213 4.041691 AGGAACACTTGTTGTAGTAGGCAT 59.958 41.667 0.00 0.00 37.51 4.40
3145 3219 4.219944 ACTTGTTGTAGTAGGCATTCGAGA 59.780 41.667 0.00 0.00 0.00 4.04
3172 3247 2.452116 TGCTAAGGACCAGCACACT 58.548 52.632 2.41 0.00 43.90 3.55
3179 3254 2.047061 AGGACCAGCACACTAGAACAA 58.953 47.619 0.00 0.00 0.00 2.83
3185 3260 2.942376 CAGCACACTAGAACAACAACCA 59.058 45.455 0.00 0.00 0.00 3.67
3207 3282 2.289882 CCACAGATGAAGAGAAGTGGCA 60.290 50.000 0.00 0.00 39.89 4.92
3210 3285 3.008813 ACAGATGAAGAGAAGTGGCATGT 59.991 43.478 0.00 0.00 0.00 3.21
3211 3286 3.374367 CAGATGAAGAGAAGTGGCATGTG 59.626 47.826 0.00 0.00 0.00 3.21
3219 3294 0.662619 AAGTGGCATGTGTGTGTTCG 59.337 50.000 0.00 0.00 0.00 3.95
3220 3295 0.179059 AGTGGCATGTGTGTGTTCGA 60.179 50.000 0.00 0.00 0.00 3.71
3244 3322 6.172630 AGATGAGTGTATGTATGTGTTTGCA 58.827 36.000 0.00 0.00 0.00 4.08
3251 3329 4.787260 ATGTATGTGTTTGCAAGCATCA 57.213 36.364 19.30 17.52 0.00 3.07
3252 3330 3.899734 TGTATGTGTTTGCAAGCATCAC 58.100 40.909 19.30 16.05 34.38 3.06
3253 3331 3.317430 TGTATGTGTTTGCAAGCATCACA 59.683 39.130 24.30 24.30 41.38 3.58
3254 3332 2.206815 TGTGTTTGCAAGCATCACAC 57.793 45.000 19.30 19.52 39.23 3.82
3330 3411 2.537560 GCACATGAATCGGCTCGGG 61.538 63.158 0.00 0.00 0.00 5.14
3450 3564 3.118775 TGAAAGATGGTCTACGGACATGG 60.119 47.826 0.00 0.00 43.77 3.66
3455 3569 2.184533 TGGTCTACGGACATGGACATT 58.815 47.619 0.00 0.00 43.77 2.71
3486 3602 9.832445 TTAATTTCTGTGTTCTTTGTAGAGACT 57.168 29.630 0.00 0.00 0.00 3.24
3487 3603 7.721286 ATTTCTGTGTTCTTTGTAGAGACTG 57.279 36.000 0.00 0.00 0.00 3.51
3488 3604 4.621991 TCTGTGTTCTTTGTAGAGACTGC 58.378 43.478 0.00 0.00 0.00 4.40
3489 3605 4.342378 TCTGTGTTCTTTGTAGAGACTGCT 59.658 41.667 0.00 0.00 0.00 4.24
3490 3606 4.371786 TGTGTTCTTTGTAGAGACTGCTG 58.628 43.478 0.00 0.00 0.00 4.41
3585 3702 0.462581 GCCATGATCAAGCTCGGTGA 60.463 55.000 12.56 0.00 0.00 4.02
3616 3733 2.742856 CGCAGGATCTAGCATTGTTCCA 60.743 50.000 9.87 0.00 0.00 3.53
3629 3746 0.388520 TGTTCCACGCATCTCTGTCG 60.389 55.000 0.00 0.00 0.00 4.35
3645 3762 2.993899 CTGTCGACAATGTACAACCTCC 59.006 50.000 20.49 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 208 0.895530 ACTGACACCCACATCCGTAG 59.104 55.000 0.00 0.00 0.00 3.51
194 209 0.606096 CACTGACACCCACATCCGTA 59.394 55.000 0.00 0.00 0.00 4.02
199 220 0.819259 GTGCACACTGACACCCACAT 60.819 55.000 13.17 0.00 0.00 3.21
320 341 2.737376 GGCAGGGTGTCGAACGTC 60.737 66.667 0.00 0.00 0.00 4.34
328 349 2.430367 GGAAGAACGGCAGGGTGT 59.570 61.111 0.00 0.00 0.00 4.16
518 548 4.801516 GGTGGTGTTGTGTGTTTGAATAAC 59.198 41.667 0.00 0.00 0.00 1.89
527 557 1.091537 CTTTCGGTGGTGTTGTGTGT 58.908 50.000 0.00 0.00 0.00 3.72
628 658 2.523453 GAAGGAGGAGGGTTCGTGGC 62.523 65.000 0.00 0.00 0.00 5.01
703 737 1.784525 ACTACAGTGTCAAGAAGCGC 58.215 50.000 0.00 0.00 0.00 5.92
762 796 2.673341 AGAGTGTGAGGAGCGCGA 60.673 61.111 12.10 0.00 0.00 5.87
775 809 0.550914 TGGCAGTTGGGTTTGAGAGT 59.449 50.000 0.00 0.00 0.00 3.24
817 856 3.246619 GGACGCTATGCTATACTGAAGC 58.753 50.000 0.00 0.00 40.50 3.86
820 859 3.305403 GCTTGGACGCTATGCTATACTGA 60.305 47.826 0.00 0.00 0.00 3.41
896 939 3.492829 GCCTGCTTATATATAGACGCCCC 60.493 52.174 3.68 0.00 0.00 5.80
956 999 3.096489 TGAATTTGCTTGTGTTGGCTC 57.904 42.857 0.00 0.00 0.00 4.70
1068 1116 3.872603 TGGTGGCGGCTGTGAACT 61.873 61.111 11.43 0.00 0.00 3.01
1670 1718 1.001633 CAGTAGTACGTGGCTGGGTTT 59.998 52.381 0.00 0.00 0.00 3.27
1712 1768 5.387113 TCCATCACTTACTGGCCATTAAT 57.613 39.130 15.25 4.43 32.30 1.40
1730 1786 6.495181 AGAGGATATCAACGTCAGTTATCCAT 59.505 38.462 24.94 16.80 41.85 3.41
1732 1788 6.334102 AGAGGATATCAACGTCAGTTATCC 57.666 41.667 20.13 20.13 40.66 2.59
1749 1805 1.118356 CCTAAGCGCCTGGAGAGGAT 61.118 60.000 2.29 0.00 42.93 3.24
1999 2055 1.530323 TCTCGATGTGGACGTTGAGA 58.470 50.000 13.02 13.02 45.47 3.27
2057 2113 2.348411 ACGGCTAGGAATGAAATGGG 57.652 50.000 0.00 0.00 0.00 4.00
2073 2129 8.875803 TGTATACAACATAAAGAAAAGCTACGG 58.124 33.333 2.20 0.00 31.43 4.02
2087 2143 3.491964 GCCGCTGGAGTGTATACAACATA 60.492 47.826 7.25 0.00 41.10 2.29
2089 2145 1.404986 GCCGCTGGAGTGTATACAACA 60.405 52.381 7.25 6.57 35.06 3.33
2090 2146 1.287425 GCCGCTGGAGTGTATACAAC 58.713 55.000 7.25 5.03 0.00 3.32
2092 2148 1.119684 ATGCCGCTGGAGTGTATACA 58.880 50.000 0.08 0.08 0.00 2.29
2093 2149 2.240493 AATGCCGCTGGAGTGTATAC 57.760 50.000 0.00 0.00 0.00 1.47
2113 2176 1.636148 AGCACCCAATGTCAGCAAAT 58.364 45.000 0.00 0.00 0.00 2.32
2114 2177 2.284754 TAGCACCCAATGTCAGCAAA 57.715 45.000 0.00 0.00 0.00 3.68
2115 2178 2.290832 TGATAGCACCCAATGTCAGCAA 60.291 45.455 0.00 0.00 0.00 3.91
2116 2179 1.281577 TGATAGCACCCAATGTCAGCA 59.718 47.619 0.00 0.00 0.00 4.41
2117 2180 2.042686 TGATAGCACCCAATGTCAGC 57.957 50.000 0.00 0.00 0.00 4.26
2133 2197 1.005275 CTCCCGATGCTGCGATGAT 60.005 57.895 0.00 0.00 0.00 2.45
2218 2286 2.355363 CTCACGCCGTTGTCCGAA 60.355 61.111 0.00 0.00 39.56 4.30
2263 2331 4.651008 GTCACCGCCGACACCGAA 62.651 66.667 0.00 0.00 38.22 4.30
2344 2412 1.347817 CGTTCTCGCAGCTCTTGGTC 61.348 60.000 0.00 0.00 0.00 4.02
2467 2535 2.565841 GAGAGGGTGATATTGGTGCAC 58.434 52.381 8.80 8.80 0.00 4.57
2476 2544 1.826921 GACGCCGGAGAGGGTGATA 60.827 63.158 13.83 0.00 40.04 2.15
2548 2616 2.651137 CGTCGTGGTGTTGCCGTAC 61.651 63.158 0.00 0.00 41.21 3.67
2735 2803 6.282930 ACTACACGACCAAGCTTTAACTAAA 58.717 36.000 0.00 0.00 0.00 1.85
2957 3029 8.284945 TGATGAATAATGGAAGTTTCTCTTGG 57.715 34.615 0.00 0.00 36.40 3.61
2985 3059 0.811281 GTCCTTGTACTGCCATTGCC 59.189 55.000 0.00 0.00 36.33 4.52
3053 3127 4.939052 TCTTGCCCTAGTGCTTATAGTC 57.061 45.455 0.00 0.00 0.00 2.59
3058 3132 3.055094 CCTTCTTCTTGCCCTAGTGCTTA 60.055 47.826 0.00 0.00 0.00 3.09
3066 3140 0.538287 GTGCACCTTCTTCTTGCCCT 60.538 55.000 5.22 0.00 35.26 5.19
3081 3155 0.611618 GGGACAATGATGGTGGTGCA 60.612 55.000 0.00 0.00 0.00 4.57
3087 3161 2.269023 TGAGAGTGGGACAATGATGGT 58.731 47.619 0.00 0.00 44.16 3.55
3090 3164 3.033909 TCGATGAGAGTGGGACAATGAT 58.966 45.455 0.00 0.00 44.16 2.45
3101 3175 1.205893 GTTCCTGGCTTCGATGAGAGT 59.794 52.381 1.89 0.00 0.00 3.24
3108 3182 0.468226 ACAAGTGTTCCTGGCTTCGA 59.532 50.000 0.00 0.00 0.00 3.71
3121 3195 4.242475 TCGAATGCCTACTACAACAAGTG 58.758 43.478 0.00 0.00 0.00 3.16
3136 3210 1.005557 GCATGACGACTTCTCGAATGC 60.006 52.381 14.79 14.79 46.22 3.56
3139 3213 3.427638 CCTTAGCATGACGACTTCTCGAA 60.428 47.826 0.00 0.00 43.06 3.71
3145 3219 1.899814 TGGTCCTTAGCATGACGACTT 59.100 47.619 0.00 0.00 32.19 3.01
3172 3247 3.916359 TCTGTGGTGGTTGTTGTTCTA 57.084 42.857 0.00 0.00 0.00 2.10
3179 3254 2.705658 TCTCTTCATCTGTGGTGGTTGT 59.294 45.455 0.00 0.00 0.00 3.32
3185 3260 2.289945 GCCACTTCTCTTCATCTGTGGT 60.290 50.000 10.94 0.00 44.63 4.16
3207 3282 3.243873 ACACTCATCTCGAACACACACAT 60.244 43.478 0.00 0.00 0.00 3.21
3210 3285 4.022329 ACATACACTCATCTCGAACACACA 60.022 41.667 0.00 0.00 0.00 3.72
3211 3286 4.486090 ACATACACTCATCTCGAACACAC 58.514 43.478 0.00 0.00 0.00 3.82
3219 3294 6.313658 TGCAAACACATACATACACTCATCTC 59.686 38.462 0.00 0.00 0.00 2.75
3220 3295 6.172630 TGCAAACACATACATACACTCATCT 58.827 36.000 0.00 0.00 0.00 2.90
3487 3603 4.038282 TCAATCCATTCATTATGCCACAGC 59.962 41.667 0.00 0.00 40.48 4.40
3488 3604 5.777850 TCAATCCATTCATTATGCCACAG 57.222 39.130 0.00 0.00 32.60 3.66
3489 3605 6.541934 TTTCAATCCATTCATTATGCCACA 57.458 33.333 0.00 0.00 32.60 4.17
3490 3606 8.441312 AATTTTCAATCCATTCATTATGCCAC 57.559 30.769 0.00 0.00 32.60 5.01
3530 3647 6.126911 CCAGAGCTTAAAGAAGGGTCTAATCT 60.127 42.308 0.00 0.00 36.29 2.40
3566 3683 0.462581 TCACCGAGCTTGATCATGGC 60.463 55.000 1.22 11.07 0.00 4.40
3585 3702 2.496899 AGATCCTGCGGAAAATGTGT 57.503 45.000 0.00 0.00 34.34 3.72
3610 3727 0.388520 CGACAGAGATGCGTGGAACA 60.389 55.000 0.00 0.00 35.74 3.18
3616 3733 1.067565 ACATTGTCGACAGAGATGCGT 60.068 47.619 22.58 10.35 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.