Multiple sequence alignment - TraesCS1B01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G321600 chr1B 100.000 3380 0 0 1 3380 545642175 545645554 0.000000e+00 6242.0
1 TraesCS1B01G321600 chr1B 86.552 1160 112 16 1262 2398 545800308 545801446 0.000000e+00 1238.0
2 TraesCS1B01G321600 chr1B 83.851 966 110 23 2446 3376 545801446 545802400 0.000000e+00 878.0
3 TraesCS1B01G321600 chr1B 75.587 852 76 60 450 1236 545799426 545800210 1.970000e-77 300.0
4 TraesCS1B01G321600 chr1D 87.452 2064 169 42 368 2398 405762792 405764798 0.000000e+00 2294.0
5 TraesCS1B01G321600 chr1D 88.103 580 48 8 2448 3008 405764800 405765377 0.000000e+00 669.0
6 TraesCS1B01G321600 chr1D 93.711 159 7 2 49 205 405762636 405762793 5.640000e-58 235.0
7 TraesCS1B01G321600 chr1D 82.168 286 28 11 3113 3380 405765408 405765688 1.220000e-54 224.0
8 TraesCS1B01G321600 chr1A 89.653 1324 84 27 1097 2385 500979500 500980805 0.000000e+00 1637.0
9 TraesCS1B01G321600 chr1A 86.940 1049 110 11 1373 2398 500988406 500989450 0.000000e+00 1153.0
10 TraesCS1B01G321600 chr1A 93.403 667 30 4 2440 3092 500980818 500981484 0.000000e+00 976.0
11 TraesCS1B01G321600 chr1A 88.527 584 45 11 2459 3030 500989463 500990036 0.000000e+00 688.0
12 TraesCS1B01G321600 chr1A 94.030 268 16 0 3113 3380 500981473 500981740 1.130000e-109 407.0
13 TraesCS1B01G321600 chr1A 80.467 471 34 24 720 1156 500985756 500986202 1.180000e-79 307.0
14 TraesCS1B01G321600 chr1A 76.748 615 70 38 449 1039 500978810 500979375 3.320000e-70 276.0
15 TraesCS1B01G321600 chr1A 83.392 283 28 8 3113 3377 500990049 500990330 9.370000e-61 244.0
16 TraesCS1B01G321600 chr6A 90.058 171 14 2 200 369 5939245 5939077 5.680000e-53 219.0
17 TraesCS1B01G321600 chr7B 88.889 180 15 5 197 374 663743406 663743582 2.040000e-52 217.0
18 TraesCS1B01G321600 chr7B 88.166 169 16 3 204 372 650609092 650608928 7.400000e-47 198.0
19 TraesCS1B01G321600 chr6B 89.286 168 15 2 204 370 548811085 548811250 1.230000e-49 207.0
20 TraesCS1B01G321600 chr6B 100.000 51 0 0 1 51 27337326 27337276 9.980000e-16 95.3
21 TraesCS1B01G321600 chr5A 89.157 166 16 1 204 369 567110966 567110803 4.420000e-49 206.0
22 TraesCS1B01G321600 chr2A 89.222 167 15 2 204 369 349724582 349724418 4.420000e-49 206.0
23 TraesCS1B01G321600 chr2A 87.931 174 14 5 202 374 611314263 611314096 7.400000e-47 198.0
24 TraesCS1B01G321600 chrUn 78.981 314 54 10 2764 3068 96951659 96951349 1.590000e-48 204.0
25 TraesCS1B01G321600 chrUn 88.166 169 16 3 202 369 96027974 96027809 7.400000e-47 198.0
26 TraesCS1B01G321600 chrUn 100.000 52 0 0 1 52 276975082 276975133 2.780000e-16 97.1
27 TraesCS1B01G321600 chrUn 96.610 59 0 2 1 59 276976853 276976797 2.780000e-16 97.1
28 TraesCS1B01G321600 chrUn 100.000 51 0 0 1 51 34573779 34573729 9.980000e-16 95.3
29 TraesCS1B01G321600 chr2D 88.166 169 18 2 202 370 367501999 367502165 2.060000e-47 200.0
30 TraesCS1B01G321600 chr5B 98.182 55 1 0 1 55 705383179 705383125 2.780000e-16 97.1
31 TraesCS1B01G321600 chr5B 100.000 51 0 0 1 51 571727157 571727207 9.980000e-16 95.3
32 TraesCS1B01G321600 chr4A 100.000 52 0 0 1 52 619966980 619966929 2.780000e-16 97.1
33 TraesCS1B01G321600 chr2B 100.000 52 0 0 1 52 768410101 768410152 2.780000e-16 97.1
34 TraesCS1B01G321600 chr3B 96.552 58 0 2 1 56 810703591 810703534 9.980000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G321600 chr1B 545642175 545645554 3379 False 6242.000000 6242 100.000000 1 3380 1 chr1B.!!$F1 3379
1 TraesCS1B01G321600 chr1B 545799426 545802400 2974 False 805.333333 1238 81.996667 450 3376 3 chr1B.!!$F2 2926
2 TraesCS1B01G321600 chr1D 405762636 405765688 3052 False 855.500000 2294 87.858500 49 3380 4 chr1D.!!$F1 3331
3 TraesCS1B01G321600 chr1A 500978810 500981740 2930 False 824.000000 1637 88.458500 449 3380 4 chr1A.!!$F1 2931
4 TraesCS1B01G321600 chr1A 500985756 500990330 4574 False 598.000000 1153 84.831500 720 3377 4 chr1A.!!$F2 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.034059 ACTGCTCTTCCCAAGACGTG 59.966 55.0 0.0 0.0 33.12 4.49 F
1289 1552 0.035439 AGCCACCCAGTACCATTTCG 60.035 55.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 3732 1.006102 CCACCAGTCGAGCTTTCGT 60.006 57.895 0.0 0.0 0.00 3.85 R
2431 4636 0.109086 ACAAGAGTGTCGATCAGCGG 60.109 55.000 0.0 0.0 41.33 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.197486 GTTCATTCTGTGATTTAATTGCGTC 57.803 36.000 0.00 0.00 36.54 5.19
25 26 6.741992 TCATTCTGTGATTTAATTGCGTCT 57.258 33.333 0.00 0.00 0.00 4.18
26 27 7.841915 TCATTCTGTGATTTAATTGCGTCTA 57.158 32.000 0.00 0.00 0.00 2.59
27 28 8.437360 TCATTCTGTGATTTAATTGCGTCTAT 57.563 30.769 0.00 0.00 0.00 1.98
28 29 9.541143 TCATTCTGTGATTTAATTGCGTCTATA 57.459 29.630 0.00 0.00 0.00 1.31
29 30 9.803130 CATTCTGTGATTTAATTGCGTCTATAG 57.197 33.333 0.00 0.00 0.00 1.31
30 31 7.946655 TCTGTGATTTAATTGCGTCTATAGG 57.053 36.000 0.00 0.00 0.00 2.57
31 32 7.497595 TCTGTGATTTAATTGCGTCTATAGGT 58.502 34.615 0.00 0.00 0.00 3.08
32 33 7.652105 TCTGTGATTTAATTGCGTCTATAGGTC 59.348 37.037 0.00 0.00 0.00 3.85
33 34 7.269316 TGTGATTTAATTGCGTCTATAGGTCA 58.731 34.615 0.00 0.00 0.00 4.02
34 35 7.766738 TGTGATTTAATTGCGTCTATAGGTCAA 59.233 33.333 0.00 2.74 0.00 3.18
35 36 8.609176 GTGATTTAATTGCGTCTATAGGTCAAA 58.391 33.333 0.00 0.00 0.00 2.69
36 37 9.337396 TGATTTAATTGCGTCTATAGGTCAAAT 57.663 29.630 0.00 0.00 0.00 2.32
39 40 9.781834 TTTAATTGCGTCTATAGGTCAAATTTG 57.218 29.630 12.15 12.15 0.00 2.32
40 41 7.391148 AATTGCGTCTATAGGTCAAATTTGT 57.609 32.000 17.47 1.67 0.00 2.83
41 42 6.417191 TTGCGTCTATAGGTCAAATTTGTC 57.583 37.500 17.47 12.07 0.00 3.18
42 43 5.483811 TGCGTCTATAGGTCAAATTTGTCA 58.516 37.500 17.47 0.00 0.00 3.58
43 44 5.935206 TGCGTCTATAGGTCAAATTTGTCAA 59.065 36.000 17.47 5.31 0.00 3.18
44 45 6.428465 TGCGTCTATAGGTCAAATTTGTCAAA 59.572 34.615 17.47 0.00 0.00 2.69
45 46 7.120579 TGCGTCTATAGGTCAAATTTGTCAAAT 59.879 33.333 17.47 4.91 0.00 2.32
46 47 7.968405 GCGTCTATAGGTCAAATTTGTCAAATT 59.032 33.333 16.26 16.26 42.62 1.82
65 66 3.859414 GCCGCTGATCAGAGCCCT 61.859 66.667 27.04 0.00 35.36 5.19
67 68 2.420890 CGCTGATCAGAGCCCTCC 59.579 66.667 27.04 5.56 35.36 4.30
70 71 0.254178 GCTGATCAGAGCCCTCCAAA 59.746 55.000 27.04 0.00 32.35 3.28
71 72 2.016096 GCTGATCAGAGCCCTCCAAAC 61.016 57.143 27.04 0.00 32.35 2.93
80 81 0.962855 GCCCTCCAAACTGCTCTTCC 60.963 60.000 0.00 0.00 0.00 3.46
89 90 0.034059 ACTGCTCTTCCCAAGACGTG 59.966 55.000 0.00 0.00 33.12 4.49
98 99 0.970937 CCCAAGACGTGAGAGCCCTA 60.971 60.000 0.00 0.00 0.00 3.53
104 105 2.166664 AGACGTGAGAGCCCTACAAATC 59.833 50.000 0.00 0.00 0.00 2.17
208 211 6.392625 TGAGCATACACTCAGTTATACTCC 57.607 41.667 0.00 0.00 41.72 3.85
209 212 5.302059 TGAGCATACACTCAGTTATACTCCC 59.698 44.000 0.00 0.00 41.72 4.30
210 213 5.459505 AGCATACACTCAGTTATACTCCCT 58.540 41.667 0.00 0.00 0.00 4.20
211 214 5.536916 AGCATACACTCAGTTATACTCCCTC 59.463 44.000 0.00 0.00 0.00 4.30
212 215 5.302059 GCATACACTCAGTTATACTCCCTCA 59.698 44.000 0.00 0.00 0.00 3.86
213 216 6.515862 GCATACACTCAGTTATACTCCCTCAG 60.516 46.154 0.00 0.00 0.00 3.35
214 217 4.936802 ACACTCAGTTATACTCCCTCAGT 58.063 43.478 0.00 0.00 39.41 3.41
215 218 5.334421 ACACTCAGTTATACTCCCTCAGTT 58.666 41.667 0.00 0.00 36.43 3.16
216 219 5.419471 ACACTCAGTTATACTCCCTCAGTTC 59.581 44.000 0.00 0.00 36.43 3.01
217 220 4.957327 ACTCAGTTATACTCCCTCAGTTCC 59.043 45.833 0.00 0.00 36.43 3.62
218 221 5.205056 CTCAGTTATACTCCCTCAGTTCCT 58.795 45.833 0.00 0.00 36.43 3.36
219 222 6.068971 ACTCAGTTATACTCCCTCAGTTCCTA 60.069 42.308 0.00 0.00 36.43 2.94
220 223 6.738635 TCAGTTATACTCCCTCAGTTCCTAA 58.261 40.000 0.00 0.00 36.43 2.69
221 224 7.186972 TCAGTTATACTCCCTCAGTTCCTAAA 58.813 38.462 0.00 0.00 36.43 1.85
222 225 7.844779 TCAGTTATACTCCCTCAGTTCCTAAAT 59.155 37.037 0.00 0.00 36.43 1.40
223 226 9.144298 CAGTTATACTCCCTCAGTTCCTAAATA 57.856 37.037 0.00 0.00 36.43 1.40
224 227 9.900112 AGTTATACTCCCTCAGTTCCTAAATAT 57.100 33.333 0.00 0.00 36.43 1.28
228 231 9.900112 ATACTCCCTCAGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 36.43 2.24
229 232 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
230 233 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
231 234 8.480133 TCCCTCAGTTCCTAAATATAAGTCTC 57.520 38.462 0.00 0.00 0.00 3.36
232 235 8.290277 TCCCTCAGTTCCTAAATATAAGTCTCT 58.710 37.037 0.00 0.00 0.00 3.10
233 236 8.929487 CCCTCAGTTCCTAAATATAAGTCTCTT 58.071 37.037 0.00 0.00 0.00 2.85
281 284 9.727859 ACTACATTCAGATGTATATAGACGTCT 57.272 33.333 23.66 23.66 45.20 4.18
298 301 7.369803 AGACGTCTTTTAGAGTATACGTTCA 57.630 36.000 13.58 0.00 42.93 3.18
299 302 7.239972 AGACGTCTTTTAGAGTATACGTTCAC 58.760 38.462 13.58 0.00 42.93 3.18
300 303 7.118971 AGACGTCTTTTAGAGTATACGTTCACT 59.881 37.037 13.58 0.00 42.93 3.41
301 304 7.239972 ACGTCTTTTAGAGTATACGTTCACTC 58.760 38.462 17.15 17.15 40.31 3.51
302 305 7.095060 ACGTCTTTTAGAGTATACGTTCACTCA 60.095 37.037 23.35 11.86 42.99 3.41
303 306 7.909121 CGTCTTTTAGAGTATACGTTCACTCAT 59.091 37.037 23.35 14.45 42.99 2.90
304 307 9.570488 GTCTTTTAGAGTATACGTTCACTCATT 57.430 33.333 23.35 11.70 42.99 2.57
310 313 8.690680 AGAGTATACGTTCACTCATTTTTCTC 57.309 34.615 23.35 6.15 42.99 2.87
311 314 8.524487 AGAGTATACGTTCACTCATTTTTCTCT 58.476 33.333 23.35 7.72 42.99 3.10
312 315 8.467402 AGTATACGTTCACTCATTTTTCTCTG 57.533 34.615 0.00 0.00 0.00 3.35
313 316 8.088981 AGTATACGTTCACTCATTTTTCTCTGT 58.911 33.333 0.00 0.00 0.00 3.41
314 317 9.350357 GTATACGTTCACTCATTTTTCTCTGTA 57.650 33.333 0.00 0.00 0.00 2.74
316 319 7.121974 ACGTTCACTCATTTTTCTCTGTATG 57.878 36.000 0.00 0.00 0.00 2.39
317 320 6.706270 ACGTTCACTCATTTTTCTCTGTATGT 59.294 34.615 0.00 0.00 0.00 2.29
318 321 7.870954 ACGTTCACTCATTTTTCTCTGTATGTA 59.129 33.333 0.00 0.00 0.00 2.29
319 322 8.376203 CGTTCACTCATTTTTCTCTGTATGTAG 58.624 37.037 0.00 0.00 0.00 2.74
320 323 9.209175 GTTCACTCATTTTTCTCTGTATGTAGT 57.791 33.333 0.00 0.00 0.00 2.73
321 324 8.988064 TCACTCATTTTTCTCTGTATGTAGTC 57.012 34.615 0.00 0.00 0.00 2.59
322 325 8.807118 TCACTCATTTTTCTCTGTATGTAGTCT 58.193 33.333 0.00 0.00 0.00 3.24
330 333 8.996651 TTTCTCTGTATGTAGTCTATGATGGA 57.003 34.615 0.00 0.00 0.00 3.41
331 334 8.996651 TTCTCTGTATGTAGTCTATGATGGAA 57.003 34.615 0.00 0.00 0.00 3.53
332 335 9.593565 TTCTCTGTATGTAGTCTATGATGGAAT 57.406 33.333 0.00 0.00 0.00 3.01
333 336 9.237187 TCTCTGTATGTAGTCTATGATGGAATC 57.763 37.037 0.00 0.00 45.83 2.52
334 337 9.241919 CTCTGTATGTAGTCTATGATGGAATCT 57.758 37.037 0.00 0.00 45.81 2.40
335 338 9.237187 TCTGTATGTAGTCTATGATGGAATCTC 57.763 37.037 0.00 0.00 45.81 2.75
336 339 9.241919 CTGTATGTAGTCTATGATGGAATCTCT 57.758 37.037 0.00 0.00 45.81 3.10
367 370 9.453830 AGACTTATATTTAGGAATTGAGGGAGT 57.546 33.333 0.00 0.00 0.00 3.85
398 401 6.458342 CGTCTTCAGGGAGTTAATTAATTGCC 60.458 42.308 19.57 19.57 34.38 4.52
400 403 6.951198 TCTTCAGGGAGTTAATTAATTGCCAA 59.049 34.615 25.97 15.17 36.17 4.52
446 449 2.797074 TGACCGTCACACGACATTTA 57.203 45.000 0.00 0.00 46.05 1.40
511 524 2.583143 CCATTAATTCCCGTCCCTTCC 58.417 52.381 0.00 0.00 0.00 3.46
590 603 1.978580 CACCTAGATGGATGGGGGTAC 59.021 57.143 0.00 0.00 39.71 3.34
651 670 2.832129 TCCACGGCAAAGAGTAAGAGAT 59.168 45.455 0.00 0.00 0.00 2.75
658 677 6.758886 ACGGCAAAGAGTAAGAGATAAGATTG 59.241 38.462 0.00 0.00 0.00 2.67
714 733 1.459450 TGCGGTTTAAGAGGGCAATC 58.541 50.000 0.00 0.00 0.00 2.67
715 734 1.271652 TGCGGTTTAAGAGGGCAATCA 60.272 47.619 0.00 0.00 0.00 2.57
753 773 6.039717 TGCATAAGAATAATGTTTCCCAGAGC 59.960 38.462 0.00 0.00 0.00 4.09
754 774 6.264067 GCATAAGAATAATGTTTCCCAGAGCT 59.736 38.462 0.00 0.00 0.00 4.09
779 799 2.050350 CATGCAGCTGGGGGACAAG 61.050 63.158 17.12 0.00 0.00 3.16
967 1023 1.999295 TCCATTCCATTCCCCACAAGA 59.001 47.619 0.00 0.00 0.00 3.02
981 1037 3.282021 CCACAAGAGAGAGAGAGAGAGG 58.718 54.545 0.00 0.00 0.00 3.69
993 1060 2.123033 GAGAGGGAGAGGGGAGCC 60.123 72.222 0.00 0.00 0.00 4.70
1086 1159 8.477419 TTTGAACCAGGATTTTGAGTTTAGAT 57.523 30.769 0.00 0.00 0.00 1.98
1088 1161 8.561738 TGAACCAGGATTTTGAGTTTAGATAC 57.438 34.615 0.00 0.00 0.00 2.24
1090 1163 8.934023 AACCAGGATTTTGAGTTTAGATACAA 57.066 30.769 0.00 0.00 0.00 2.41
1093 1166 9.401058 CCAGGATTTTGAGTTTAGATACAATCT 57.599 33.333 0.00 0.00 43.33 2.40
1109 1263 9.116067 AGATACAATCTAGTAGAACAGACAGAC 57.884 37.037 3.45 0.00 38.00 3.51
1226 1409 2.101582 GCTGTCTCTGGGTCGATTATGT 59.898 50.000 0.00 0.00 0.00 2.29
1283 1546 3.359695 TGAATTAAGCCACCCAGTACC 57.640 47.619 0.00 0.00 0.00 3.34
1289 1552 0.035439 AGCCACCCAGTACCATTTCG 60.035 55.000 0.00 0.00 0.00 3.46
1293 1556 1.737793 CACCCAGTACCATTTCGAAGC 59.262 52.381 0.00 0.00 0.00 3.86
1339 3506 6.373005 TCAGTTTATCCTCACCTGAATTCA 57.627 37.500 8.12 8.12 0.00 2.57
1410 3580 0.969149 TGCACTCGAAGGTGATCTGT 59.031 50.000 8.85 0.00 39.34 3.41
1562 3732 2.353704 CGCTTGTCTCCTACATCACCAA 60.354 50.000 0.00 0.00 38.10 3.67
1715 3885 3.831911 GACATTTCATTCCACCCCTTGAA 59.168 43.478 0.00 0.00 0.00 2.69
1724 3894 0.322456 CACCCCTTGAATCAAGCGGA 60.322 55.000 27.80 0.00 40.66 5.54
1731 3901 3.689161 CCTTGAATCAAGCGGACACAATA 59.311 43.478 17.03 0.00 39.85 1.90
1814 3997 3.964411 TGTCCTCCGACAAGATCTTCTA 58.036 45.455 4.57 0.00 46.09 2.10
1815 3998 4.537751 TGTCCTCCGACAAGATCTTCTAT 58.462 43.478 4.57 0.00 46.09 1.98
1816 3999 5.691896 TGTCCTCCGACAAGATCTTCTATA 58.308 41.667 4.57 0.00 46.09 1.31
1819 4002 7.287927 TGTCCTCCGACAAGATCTTCTATAATT 59.712 37.037 4.57 0.00 46.09 1.40
1822 4005 7.757624 CCTCCGACAAGATCTTCTATAATTAGC 59.242 40.741 4.57 0.00 0.00 3.09
1825 4008 9.261180 CCGACAAGATCTTCTATAATTAGCAAA 57.739 33.333 4.57 0.00 0.00 3.68
2112 4317 3.494924 CGATATTCTGCAAGGATGTCCCA 60.495 47.826 0.00 0.00 36.78 4.37
2181 4386 0.599991 CGTCAGTACAGGCACTTGCA 60.600 55.000 3.15 0.00 44.36 4.08
2217 4422 0.462581 ATTGCACGGAGATCGCATGT 60.463 50.000 0.00 0.00 43.89 3.21
2319 4524 5.833131 TGAAGTTGAAAAGGGCTATTTCACT 59.167 36.000 14.69 12.60 44.14 3.41
2390 4595 2.763933 AGCTGACTGACATGTCAACAG 58.236 47.619 34.16 34.16 44.98 3.16
2397 4602 5.647658 TGACTGACATGTCAACAGTTTTCTT 59.352 36.000 27.63 1.42 43.08 2.52
2398 4603 5.883661 ACTGACATGTCAACAGTTTTCTTG 58.116 37.500 27.63 14.41 41.21 3.02
2399 4604 5.163622 ACTGACATGTCAACAGTTTTCTTGG 60.164 40.000 27.63 14.22 41.21 3.61
2400 4605 4.044426 GACATGTCAACAGTTTTCTTGGC 58.956 43.478 21.07 0.00 0.00 4.52
2401 4606 3.446873 ACATGTCAACAGTTTTCTTGGCA 59.553 39.130 0.00 0.00 33.31 4.92
2402 4607 3.781079 TGTCAACAGTTTTCTTGGCAG 57.219 42.857 0.00 0.00 0.00 4.85
2403 4608 3.351740 TGTCAACAGTTTTCTTGGCAGA 58.648 40.909 0.00 0.00 0.00 4.26
2404 4609 3.953612 TGTCAACAGTTTTCTTGGCAGAT 59.046 39.130 0.00 0.00 0.00 2.90
2405 4610 4.402155 TGTCAACAGTTTTCTTGGCAGATT 59.598 37.500 0.00 0.00 0.00 2.40
2406 4611 5.592282 TGTCAACAGTTTTCTTGGCAGATTA 59.408 36.000 0.00 0.00 0.00 1.75
2407 4612 6.265196 TGTCAACAGTTTTCTTGGCAGATTAT 59.735 34.615 0.00 0.00 0.00 1.28
2408 4613 6.803807 GTCAACAGTTTTCTTGGCAGATTATC 59.196 38.462 0.00 0.00 0.00 1.75
2409 4614 6.489700 TCAACAGTTTTCTTGGCAGATTATCA 59.510 34.615 0.00 0.00 0.00 2.15
2410 4615 7.177216 TCAACAGTTTTCTTGGCAGATTATCAT 59.823 33.333 0.00 0.00 0.00 2.45
2411 4616 7.472334 ACAGTTTTCTTGGCAGATTATCATT 57.528 32.000 0.00 0.00 0.00 2.57
2412 4617 7.542025 ACAGTTTTCTTGGCAGATTATCATTC 58.458 34.615 0.00 0.00 0.00 2.67
2413 4618 7.177216 ACAGTTTTCTTGGCAGATTATCATTCA 59.823 33.333 0.00 0.00 0.00 2.57
2414 4619 8.195436 CAGTTTTCTTGGCAGATTATCATTCAT 58.805 33.333 0.00 0.00 0.00 2.57
2415 4620 8.195436 AGTTTTCTTGGCAGATTATCATTCATG 58.805 33.333 0.00 0.00 0.00 3.07
2416 4621 7.649533 TTTCTTGGCAGATTATCATTCATGT 57.350 32.000 0.00 0.00 0.00 3.21
2417 4622 8.750515 TTTCTTGGCAGATTATCATTCATGTA 57.249 30.769 0.00 0.00 0.00 2.29
2418 4623 8.750515 TTCTTGGCAGATTATCATTCATGTAA 57.249 30.769 0.00 0.00 0.00 2.41
2419 4624 8.929260 TCTTGGCAGATTATCATTCATGTAAT 57.071 30.769 0.00 0.00 0.00 1.89
2420 4625 9.358406 TCTTGGCAGATTATCATTCATGTAATT 57.642 29.630 0.00 0.00 0.00 1.40
2421 4626 9.406828 CTTGGCAGATTATCATTCATGTAATTG 57.593 33.333 0.00 0.00 0.00 2.32
2422 4627 7.372714 TGGCAGATTATCATTCATGTAATTGC 58.627 34.615 0.00 3.06 0.00 3.56
2423 4628 7.014422 TGGCAGATTATCATTCATGTAATTGCA 59.986 33.333 0.00 0.00 31.50 4.08
2424 4629 8.033038 GGCAGATTATCATTCATGTAATTGCAT 58.967 33.333 2.84 2.84 31.50 3.96
2425 4630 9.419297 GCAGATTATCATTCATGTAATTGCATT 57.581 29.630 6.26 0.00 31.09 3.56
2453 4658 3.242518 CGCTGATCGACACTCTTGTAAA 58.757 45.455 0.00 0.00 41.67 2.01
2484 4689 1.317431 GCACTTCCATGGATGCTGCA 61.317 55.000 29.39 4.13 35.16 4.41
2524 4729 3.450115 GGACTCCGGACCGACCAG 61.450 72.222 17.49 10.56 38.90 4.00
2582 4793 5.997746 CACTATGGTTCTCTGGAAACTTCAA 59.002 40.000 0.00 0.00 39.70 2.69
2583 4794 6.656693 CACTATGGTTCTCTGGAAACTTCAAT 59.343 38.462 0.00 0.00 39.70 2.57
2654 4865 8.637986 TGTTTTCAGTAATTAAAGACTGGCAAT 58.362 29.630 16.11 0.00 42.77 3.56
2711 4932 2.618139 CTTTTTGGGGGTGGGGGT 59.382 61.111 0.00 0.00 0.00 4.95
2914 5144 3.944650 TCTTTGTGTAAGTCAGCTTGCAA 59.055 39.130 0.00 0.00 46.09 4.08
2920 5150 4.092675 GTGTAAGTCAGCTTGCAAGAGATC 59.907 45.833 30.39 18.01 46.09 2.75
3098 5354 5.646692 CCATATGGTAGGAAAGGAAAGGA 57.353 43.478 14.09 0.00 0.00 3.36
3099 5355 5.377478 CCATATGGTAGGAAAGGAAAGGAC 58.623 45.833 14.09 0.00 0.00 3.85
3100 5356 5.377478 CATATGGTAGGAAAGGAAAGGACC 58.623 45.833 0.00 0.00 0.00 4.46
3101 5357 2.999928 TGGTAGGAAAGGAAAGGACCT 58.000 47.619 0.00 0.00 42.69 3.85
3145 5401 0.321671 CAGAGGCGGAGGAAAGAACA 59.678 55.000 0.00 0.00 0.00 3.18
3162 5418 7.859875 GGAAAGAACAATCATGCTTTAGATAGC 59.140 37.037 0.00 0.00 41.59 2.97
3251 5510 2.736144 AATGAGCAATTGTGGCAGTG 57.264 45.000 7.40 0.00 0.00 3.66
3322 5595 5.930209 AGGATGAAAAGGAAGGGCATATA 57.070 39.130 0.00 0.00 0.00 0.86
3355 5628 7.340743 TCCAAAGTTTTTGAAAGATAGACCACA 59.659 33.333 3.24 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.993121 CCTATAGACGCAATTAAATCACAGAAT 58.007 33.333 0.00 0.00 0.00 2.40
5 6 7.985184 ACCTATAGACGCAATTAAATCACAGAA 59.015 33.333 0.00 0.00 0.00 3.02
6 7 7.497595 ACCTATAGACGCAATTAAATCACAGA 58.502 34.615 0.00 0.00 0.00 3.41
7 8 7.438160 TGACCTATAGACGCAATTAAATCACAG 59.562 37.037 0.00 0.00 0.00 3.66
8 9 7.269316 TGACCTATAGACGCAATTAAATCACA 58.731 34.615 0.00 0.00 0.00 3.58
9 10 7.709269 TGACCTATAGACGCAATTAAATCAC 57.291 36.000 0.00 0.00 0.00 3.06
10 11 8.725405 TTTGACCTATAGACGCAATTAAATCA 57.275 30.769 0.00 0.00 0.00 2.57
13 14 9.781834 CAAATTTGACCTATAGACGCAATTAAA 57.218 29.630 13.08 0.00 0.00 1.52
14 15 8.952278 ACAAATTTGACCTATAGACGCAATTAA 58.048 29.630 24.64 0.00 0.00 1.40
15 16 8.500753 ACAAATTTGACCTATAGACGCAATTA 57.499 30.769 24.64 0.00 0.00 1.40
16 17 7.120579 TGACAAATTTGACCTATAGACGCAATT 59.879 33.333 24.64 0.00 0.00 2.32
17 18 6.597672 TGACAAATTTGACCTATAGACGCAAT 59.402 34.615 24.64 0.00 0.00 3.56
18 19 5.935206 TGACAAATTTGACCTATAGACGCAA 59.065 36.000 24.64 0.00 0.00 4.85
19 20 5.483811 TGACAAATTTGACCTATAGACGCA 58.516 37.500 24.64 0.00 0.00 5.24
20 21 6.417191 TTGACAAATTTGACCTATAGACGC 57.583 37.500 24.64 0.60 0.00 5.19
21 22 9.840427 AAATTTGACAAATTTGACCTATAGACG 57.160 29.630 29.31 0.00 46.30 4.18
34 35 3.726607 TCAGCGGCAAATTTGACAAATT 58.273 36.364 23.49 18.41 42.62 1.82
35 36 3.383620 TCAGCGGCAAATTTGACAAAT 57.616 38.095 23.49 7.62 35.35 2.32
36 37 2.879002 TCAGCGGCAAATTTGACAAA 57.121 40.000 23.49 2.48 35.35 2.83
37 38 2.295629 TGATCAGCGGCAAATTTGACAA 59.704 40.909 23.49 6.37 35.35 3.18
38 39 1.885233 TGATCAGCGGCAAATTTGACA 59.115 42.857 23.49 4.50 35.35 3.58
39 40 2.162208 TCTGATCAGCGGCAAATTTGAC 59.838 45.455 22.31 18.50 0.00 3.18
40 41 2.421073 CTCTGATCAGCGGCAAATTTGA 59.579 45.455 22.31 0.00 0.00 2.69
41 42 2.793933 CTCTGATCAGCGGCAAATTTG 58.206 47.619 18.36 14.03 0.00 2.32
42 43 1.133790 GCTCTGATCAGCGGCAAATTT 59.866 47.619 25.12 0.00 0.00 1.82
43 44 0.737219 GCTCTGATCAGCGGCAAATT 59.263 50.000 25.12 0.00 0.00 1.82
44 45 1.099879 GGCTCTGATCAGCGGCAAAT 61.100 55.000 28.54 0.00 40.68 2.32
45 46 1.746615 GGCTCTGATCAGCGGCAAA 60.747 57.895 28.54 6.85 40.68 3.68
46 47 2.124983 GGCTCTGATCAGCGGCAA 60.125 61.111 28.54 7.54 40.68 4.52
47 48 4.166888 GGGCTCTGATCAGCGGCA 62.167 66.667 32.35 11.00 40.04 5.69
65 66 1.774254 TCTTGGGAAGAGCAGTTTGGA 59.226 47.619 0.00 0.00 32.71 3.53
67 68 1.532868 CGTCTTGGGAAGAGCAGTTTG 59.467 52.381 0.00 0.00 38.41 2.93
70 71 0.034059 CACGTCTTGGGAAGAGCAGT 59.966 55.000 0.00 0.00 38.41 4.40
71 72 0.318441 TCACGTCTTGGGAAGAGCAG 59.682 55.000 0.00 0.00 38.41 4.24
80 81 0.173708 GTAGGGCTCTCACGTCTTGG 59.826 60.000 0.00 0.00 0.00 3.61
89 90 4.551388 CACTATCGATTTGTAGGGCTCTC 58.449 47.826 1.71 0.00 0.00 3.20
98 99 5.654603 TCTGTGTACCACTATCGATTTGT 57.345 39.130 1.71 0.00 35.11 2.83
104 105 3.780902 TGCATTCTGTGTACCACTATCG 58.219 45.455 0.00 0.00 35.11 2.92
138 139 4.570772 TGCTTCACTTATAGTCGAATTGCC 59.429 41.667 0.00 0.00 0.00 4.52
170 173 1.686325 GCTCATGGCCGTCCTCCTAA 61.686 60.000 0.00 0.00 34.27 2.69
205 208 8.485578 AGACTTATATTTAGGAACTGAGGGAG 57.514 38.462 0.00 0.00 41.52 4.30
206 209 8.290277 AGAGACTTATATTTAGGAACTGAGGGA 58.710 37.037 0.00 0.00 41.52 4.20
207 210 8.485578 AGAGACTTATATTTAGGAACTGAGGG 57.514 38.462 0.00 0.00 41.52 4.30
272 275 9.102757 TGAACGTATACTCTAAAAGACGTCTAT 57.897 33.333 20.39 13.54 42.21 1.98
273 276 8.383619 GTGAACGTATACTCTAAAAGACGTCTA 58.616 37.037 20.39 1.84 42.21 2.59
274 277 7.118971 AGTGAACGTATACTCTAAAAGACGTCT 59.881 37.037 13.58 13.58 42.21 4.18
275 278 7.239972 AGTGAACGTATACTCTAAAAGACGTC 58.760 38.462 7.70 7.70 42.21 4.34
276 279 7.095060 TGAGTGAACGTATACTCTAAAAGACGT 60.095 37.037 24.03 0.00 44.68 4.34
277 280 7.239271 TGAGTGAACGTATACTCTAAAAGACG 58.761 38.462 24.03 0.00 42.86 4.18
278 281 9.570488 AATGAGTGAACGTATACTCTAAAAGAC 57.430 33.333 24.03 5.44 42.86 3.01
284 287 9.784680 GAGAAAAATGAGTGAACGTATACTCTA 57.215 33.333 24.03 15.16 42.86 2.43
285 288 8.524487 AGAGAAAAATGAGTGAACGTATACTCT 58.476 33.333 24.03 10.98 42.86 3.24
286 289 8.587950 CAGAGAAAAATGAGTGAACGTATACTC 58.412 37.037 19.62 19.62 42.77 2.59
287 290 8.088981 ACAGAGAAAAATGAGTGAACGTATACT 58.911 33.333 4.48 4.48 0.00 2.12
288 291 8.240883 ACAGAGAAAAATGAGTGAACGTATAC 57.759 34.615 0.00 0.00 0.00 1.47
290 293 8.873830 CATACAGAGAAAAATGAGTGAACGTAT 58.126 33.333 0.00 0.00 0.00 3.06
291 294 7.870954 ACATACAGAGAAAAATGAGTGAACGTA 59.129 33.333 0.00 0.00 0.00 3.57
292 295 6.706270 ACATACAGAGAAAAATGAGTGAACGT 59.294 34.615 0.00 0.00 0.00 3.99
293 296 7.121974 ACATACAGAGAAAAATGAGTGAACG 57.878 36.000 0.00 0.00 0.00 3.95
294 297 9.209175 ACTACATACAGAGAAAAATGAGTGAAC 57.791 33.333 0.00 0.00 0.00 3.18
295 298 9.424319 GACTACATACAGAGAAAAATGAGTGAA 57.576 33.333 0.00 0.00 0.00 3.18
296 299 8.807118 AGACTACATACAGAGAAAAATGAGTGA 58.193 33.333 0.00 0.00 0.00 3.41
297 300 8.994429 AGACTACATACAGAGAAAAATGAGTG 57.006 34.615 0.00 0.00 0.00 3.51
304 307 9.421399 TCCATCATAGACTACATACAGAGAAAA 57.579 33.333 0.00 0.00 0.00 2.29
305 308 8.996651 TCCATCATAGACTACATACAGAGAAA 57.003 34.615 0.00 0.00 0.00 2.52
306 309 8.996651 TTCCATCATAGACTACATACAGAGAA 57.003 34.615 0.00 0.00 0.00 2.87
307 310 9.237187 GATTCCATCATAGACTACATACAGAGA 57.763 37.037 0.00 0.00 0.00 3.10
308 311 9.241919 AGATTCCATCATAGACTACATACAGAG 57.758 37.037 0.00 0.00 0.00 3.35
309 312 9.237187 GAGATTCCATCATAGACTACATACAGA 57.763 37.037 0.00 0.00 0.00 3.41
310 313 9.241919 AGAGATTCCATCATAGACTACATACAG 57.758 37.037 0.00 0.00 0.00 2.74
341 344 9.453830 ACTCCCTCAATTCCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
349 352 9.322769 ACGTATATACTCCCTCAATTCCTAAAT 57.677 33.333 11.05 0.00 0.00 1.40
350 353 8.716674 ACGTATATACTCCCTCAATTCCTAAA 57.283 34.615 11.05 0.00 0.00 1.85
351 354 8.168725 AGACGTATATACTCCCTCAATTCCTAA 58.831 37.037 11.05 0.00 0.00 2.69
352 355 7.696981 AGACGTATATACTCCCTCAATTCCTA 58.303 38.462 11.05 0.00 0.00 2.94
353 356 6.553857 AGACGTATATACTCCCTCAATTCCT 58.446 40.000 11.05 0.00 0.00 3.36
354 357 6.837471 AGACGTATATACTCCCTCAATTCC 57.163 41.667 11.05 0.00 0.00 3.01
355 358 7.883217 TGAAGACGTATATACTCCCTCAATTC 58.117 38.462 11.05 6.91 0.00 2.17
356 359 7.039644 CCTGAAGACGTATATACTCCCTCAATT 60.040 40.741 11.05 0.00 0.00 2.32
357 360 6.434652 CCTGAAGACGTATATACTCCCTCAAT 59.565 42.308 11.05 0.00 0.00 2.57
358 361 5.768662 CCTGAAGACGTATATACTCCCTCAA 59.231 44.000 11.05 0.00 0.00 3.02
359 362 5.314529 CCTGAAGACGTATATACTCCCTCA 58.685 45.833 11.05 10.82 0.00 3.86
360 363 4.701171 CCCTGAAGACGTATATACTCCCTC 59.299 50.000 11.05 7.72 0.00 4.30
361 364 4.353191 TCCCTGAAGACGTATATACTCCCT 59.647 45.833 11.05 2.69 0.00 4.20
362 365 4.660168 TCCCTGAAGACGTATATACTCCC 58.340 47.826 11.05 0.54 0.00 4.30
363 366 5.315348 ACTCCCTGAAGACGTATATACTCC 58.685 45.833 11.05 2.83 0.00 3.85
364 367 6.880942 AACTCCCTGAAGACGTATATACTC 57.119 41.667 11.05 7.55 0.00 2.59
365 368 8.937207 ATTAACTCCCTGAAGACGTATATACT 57.063 34.615 11.05 0.00 0.00 2.12
398 401 3.889196 ATTTGCTGCTTTTGTGCATTG 57.111 38.095 0.00 0.00 42.48 2.82
400 403 4.327898 CGATTATTTGCTGCTTTTGTGCAT 59.672 37.500 0.00 0.00 42.48 3.96
435 438 5.446143 TTTGCCAAAGATAAATGTCGTGT 57.554 34.783 0.00 0.00 0.00 4.49
446 449 9.520204 CTCGAAATTATACATTTTGCCAAAGAT 57.480 29.630 0.00 0.00 0.00 2.40
511 524 1.202203 TTCGTCGAAAACCGTCACTG 58.798 50.000 4.91 0.00 39.75 3.66
590 603 6.912082 TGTGGATAATGAAATCTTGTGTGTG 58.088 36.000 0.00 0.00 0.00 3.82
658 677 7.707624 TCCCTTGGATTCATTATGCATAATC 57.292 36.000 25.71 17.61 34.29 1.75
673 692 2.649312 TCACCTGTTGAATCCCTTGGAT 59.351 45.455 0.00 0.00 45.46 3.41
674 693 2.061848 TCACCTGTTGAATCCCTTGGA 58.938 47.619 0.00 0.00 35.55 3.53
675 694 2.584835 TCACCTGTTGAATCCCTTGG 57.415 50.000 0.00 0.00 0.00 3.61
689 708 1.065418 CCCTCTTAAACCGCATCACCT 60.065 52.381 0.00 0.00 0.00 4.00
753 773 3.506096 CAGCTGCATGCCACCGAG 61.506 66.667 16.68 6.41 44.23 4.63
771 791 4.036852 GCATAGTTATCTTTGCTTGTCCCC 59.963 45.833 8.48 0.00 42.46 4.81
818 838 3.515630 TCTTCAGCTTTATGACTCAGCG 58.484 45.455 0.00 0.00 38.66 5.18
895 943 8.592809 TGGTTATATGGATCAAAAAGTTGCTTT 58.407 29.630 0.00 0.00 34.94 3.51
967 1023 2.412591 CCTCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
981 1037 3.157949 CCTTCGGCTCCCCTCTCC 61.158 72.222 0.00 0.00 0.00 3.71
993 1060 1.712977 GCTTGCTCTCCATGCCTTCG 61.713 60.000 0.00 0.00 38.34 3.79
1006 1073 2.281070 CTGGTCGGTGTGCTTGCT 60.281 61.111 0.00 0.00 0.00 3.91
1086 1159 7.148222 GCAGTCTGTCTGTTCTACTAGATTGTA 60.148 40.741 0.00 0.00 45.23 2.41
1088 1161 6.033341 GCAGTCTGTCTGTTCTACTAGATTG 58.967 44.000 0.00 0.00 45.23 2.67
1090 1163 4.334203 CGCAGTCTGTCTGTTCTACTAGAT 59.666 45.833 0.00 0.00 45.23 1.98
1093 1166 3.671716 TCGCAGTCTGTCTGTTCTACTA 58.328 45.455 0.93 0.00 45.23 1.82
1094 1167 2.486203 CTCGCAGTCTGTCTGTTCTACT 59.514 50.000 0.93 0.00 45.23 2.57
1095 1168 2.484651 TCTCGCAGTCTGTCTGTTCTAC 59.515 50.000 0.93 0.00 45.23 2.59
1109 1263 4.738124 TGAATAACTCAGTTCTCTCGCAG 58.262 43.478 0.00 0.00 0.00 5.18
1164 1326 5.444663 TCATCTGTATGAGAATCTCACCG 57.555 43.478 15.96 4.55 43.63 4.94
1262 1445 3.268334 TGGTACTGGGTGGCTTAATTCAT 59.732 43.478 0.00 0.00 0.00 2.57
1263 1446 2.645297 TGGTACTGGGTGGCTTAATTCA 59.355 45.455 0.00 0.00 0.00 2.57
1306 1569 9.093458 AGGTGAGGATAAACTGAAATTTCATTT 57.907 29.630 20.76 18.05 36.46 2.32
1307 1570 8.526147 CAGGTGAGGATAAACTGAAATTTCATT 58.474 33.333 20.76 15.25 36.46 2.57
1308 1571 7.890127 TCAGGTGAGGATAAACTGAAATTTCAT 59.110 33.333 20.76 9.43 36.46 2.57
1339 3506 4.574674 TTGGAGCAGATGAACAAGGTAT 57.425 40.909 0.00 0.00 0.00 2.73
1389 3559 1.931841 CAGATCACCTTCGAGTGCATG 59.068 52.381 0.00 0.00 37.68 4.06
1410 3580 4.541973 TTCAGAGATGTAGAGCTTGCAA 57.458 40.909 0.00 0.00 0.00 4.08
1562 3732 1.006102 CCACCAGTCGAGCTTTCGT 60.006 57.895 0.00 0.00 0.00 3.85
1572 3742 3.198872 GCTAAATACAGCTCCACCAGTC 58.801 50.000 0.00 0.00 38.57 3.51
1580 3750 3.817647 CCTGATTGGGCTAAATACAGCTC 59.182 47.826 9.13 0.00 42.76 4.09
1715 3885 2.766263 TCCTCTATTGTGTCCGCTTGAT 59.234 45.455 0.00 0.00 0.00 2.57
1724 3894 2.502947 TGAGCAGCATCCTCTATTGTGT 59.497 45.455 0.00 0.00 0.00 3.72
1815 3998 9.435688 ACATAGCGTATCATCATTTGCTAATTA 57.564 29.630 0.00 0.00 38.30 1.40
1816 3999 8.327941 ACATAGCGTATCATCATTTGCTAATT 57.672 30.769 0.00 0.00 38.30 1.40
1819 4002 8.825667 TTTACATAGCGTATCATCATTTGCTA 57.174 30.769 0.00 0.00 39.05 3.49
1822 4005 9.882996 AACATTTACATAGCGTATCATCATTTG 57.117 29.630 0.00 0.00 0.00 2.32
1825 4008 9.882996 CAAAACATTTACATAGCGTATCATCAT 57.117 29.630 0.00 0.00 0.00 2.45
1826 4009 9.103861 TCAAAACATTTACATAGCGTATCATCA 57.896 29.630 0.00 0.00 0.00 3.07
1855 4060 3.009473 AGGAACACTGGAACTGCATACAT 59.991 43.478 0.00 0.00 0.00 2.29
2112 4317 1.337823 CGGGTGATTCTTCTCACGGTT 60.338 52.381 0.00 0.00 45.26 4.44
2181 4386 2.610232 GCAATTGTCGCCATGGAAAAGT 60.610 45.455 18.40 0.00 0.00 2.66
2304 4509 3.074538 ACAGGTCAGTGAAATAGCCCTTT 59.925 43.478 0.00 0.00 0.00 3.11
2385 4590 6.680810 TGATAATCTGCCAAGAAAACTGTTG 58.319 36.000 0.00 0.00 35.59 3.33
2386 4591 6.899393 TGATAATCTGCCAAGAAAACTGTT 57.101 33.333 0.00 0.00 35.59 3.16
2390 4595 7.977853 ACATGAATGATAATCTGCCAAGAAAAC 59.022 33.333 0.00 0.00 35.59 2.43
2397 4602 7.014422 TGCAATTACATGAATGATAATCTGCCA 59.986 33.333 0.00 0.00 30.62 4.92
2398 4603 7.372714 TGCAATTACATGAATGATAATCTGCC 58.627 34.615 0.00 0.00 30.62 4.85
2399 4604 8.981724 ATGCAATTACATGAATGATAATCTGC 57.018 30.769 0.00 6.50 31.19 4.26
2422 4627 0.939419 TCGATCAGCGGCATGAAATG 59.061 50.000 1.45 0.00 43.11 2.32
2423 4628 0.940126 GTCGATCAGCGGCATGAAAT 59.060 50.000 1.45 0.00 45.76 2.17
2424 4629 2.383170 GTCGATCAGCGGCATGAAA 58.617 52.632 1.45 0.00 45.76 2.69
2425 4630 4.108902 GTCGATCAGCGGCATGAA 57.891 55.556 1.45 0.00 45.76 2.57
2430 4635 1.153745 AAGAGTGTCGATCAGCGGC 60.154 57.895 0.00 0.00 46.88 6.53
2431 4636 0.109086 ACAAGAGTGTCGATCAGCGG 60.109 55.000 0.00 0.00 41.33 5.52
2432 4637 2.544480 TACAAGAGTGTCGATCAGCG 57.456 50.000 0.00 0.00 39.30 5.18
2433 4638 3.987868 TGTTTACAAGAGTGTCGATCAGC 59.012 43.478 0.00 0.00 39.30 4.26
2434 4639 5.445142 GCATGTTTACAAGAGTGTCGATCAG 60.445 44.000 0.00 0.00 39.30 2.90
2435 4640 4.388773 GCATGTTTACAAGAGTGTCGATCA 59.611 41.667 0.00 0.00 39.30 2.92
2436 4641 4.388773 TGCATGTTTACAAGAGTGTCGATC 59.611 41.667 0.00 0.00 39.30 3.69
2437 4642 4.314961 TGCATGTTTACAAGAGTGTCGAT 58.685 39.130 0.00 0.00 39.30 3.59
2438 4643 3.723260 TGCATGTTTACAAGAGTGTCGA 58.277 40.909 0.00 0.00 39.30 4.20
2484 4689 3.361786 AGTTGGTGCCACAGTTTAAACT 58.638 40.909 15.22 15.22 40.60 2.66
2582 4793 4.643795 ATGCGCCAACTACTGCAT 57.356 50.000 4.18 0.00 42.84 3.96
2583 4794 1.083489 GTTATGCGCCAACTACTGCA 58.917 50.000 4.18 0.00 42.22 4.41
2646 4857 1.372307 GCCTTGCCAAATTGCCAGT 59.628 52.632 0.00 0.00 0.00 4.00
2654 4865 0.832983 AGGAATGCTGCCTTGCCAAA 60.833 50.000 5.62 0.00 29.44 3.28
3082 5338 5.509832 TTAAGGTCCTTTCCTTTCCTACC 57.490 43.478 10.04 0.00 44.36 3.18
3083 5339 7.828508 TTTTTAAGGTCCTTTCCTTTCCTAC 57.171 36.000 10.04 0.00 44.36 3.18
3108 5364 5.325239 CCTCTGGTCTTTCCTACCATTTTT 58.675 41.667 0.00 0.00 45.74 1.94
3109 5365 4.811063 GCCTCTGGTCTTTCCTACCATTTT 60.811 45.833 0.00 0.00 45.74 1.82
3110 5366 3.308473 GCCTCTGGTCTTTCCTACCATTT 60.308 47.826 0.00 0.00 45.74 2.32
3111 5367 2.239907 GCCTCTGGTCTTTCCTACCATT 59.760 50.000 0.00 0.00 45.74 3.16
3127 5383 1.056660 TTGTTCTTTCCTCCGCCTCT 58.943 50.000 0.00 0.00 0.00 3.69
3145 5401 6.462067 GCAAAAGGGCTATCTAAAGCATGATT 60.462 38.462 0.00 0.00 44.64 2.57
3251 5510 3.334691 TGCTGTTGATGTTGCTAGTACC 58.665 45.455 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.