Multiple sequence alignment - TraesCS1B01G321300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G321300 chr1B 100.000 2883 0 0 1 2883 545278343 545275461 0.000000e+00 5325.0
1 TraesCS1B01G321300 chr1B 83.301 521 68 12 1713 2222 545165807 545165295 2.020000e-126 462.0
2 TraesCS1B01G321300 chr1B 94.052 269 14 2 2586 2852 419190640 419190908 9.620000e-110 407.0
3 TraesCS1B01G321300 chr1B 86.170 94 11 2 55 148 339307612 339307703 1.830000e-17 100.0
4 TraesCS1B01G321300 chr1D 92.416 1925 102 21 561 2462 405376481 405374578 0.000000e+00 2706.0
5 TraesCS1B01G321300 chr1D 85.283 530 73 4 1686 2214 405285291 405284766 2.530000e-150 542.0
6 TraesCS1B01G321300 chr1D 84.703 438 49 7 779 1201 405285748 405285314 3.430000e-114 422.0
7 TraesCS1B01G321300 chr1D 92.537 201 6 3 153 344 405378585 405378385 2.190000e-71 279.0
8 TraesCS1B01G321300 chr1A 90.773 1875 108 31 642 2462 500842916 500841053 0.000000e+00 2444.0
9 TraesCS1B01G321300 chr1A 83.113 906 125 19 1322 2225 500822842 500821963 0.000000e+00 800.0
10 TraesCS1B01G321300 chr1A 85.294 442 48 7 774 1201 500823384 500822946 9.480000e-120 440.0
11 TraesCS1B01G321300 chr1A 88.728 346 34 3 55 400 500843583 500843243 4.440000e-113 418.0
12 TraesCS1B01G321300 chr1A 94.382 267 13 2 2585 2849 468651782 468651516 2.670000e-110 409.0
13 TraesCS1B01G321300 chr1A 97.674 86 2 0 561 646 500843089 500843004 6.440000e-32 148.0
14 TraesCS1B01G321300 chr1A 85.106 94 12 2 55 148 79092337 79092428 8.500000e-16 95.3
15 TraesCS1B01G321300 chr1A 91.667 72 1 1 421 492 500843185 500843119 8.500000e-16 95.3
16 TraesCS1B01G321300 chr1A 84.211 95 13 2 55 149 576410151 576410059 1.100000e-14 91.6
17 TraesCS1B01G321300 chr2A 95.472 265 10 2 2585 2848 651904405 651904142 3.430000e-114 422.0
18 TraesCS1B01G321300 chr3A 94.485 272 13 2 2576 2845 234263118 234262847 4.440000e-113 418.0
19 TraesCS1B01G321300 chr3A 76.942 399 56 22 762 1127 577559357 577559752 8.150000e-46 195.0
20 TraesCS1B01G321300 chr3A 93.243 74 3 2 2465 2537 679984427 679984355 1.090000e-19 108.0
21 TraesCS1B01G321300 chr3A 80.645 124 24 0 909 1032 577076908 577077031 2.360000e-16 97.1
22 TraesCS1B01G321300 chr3A 85.263 95 11 3 55 149 210604842 210604751 8.500000e-16 95.3
23 TraesCS1B01G321300 chr3A 86.207 87 11 1 62 148 505668984 505669069 3.060000e-15 93.5
24 TraesCS1B01G321300 chr7A 95.057 263 12 1 2585 2846 506291322 506291584 2.070000e-111 412.0
25 TraesCS1B01G321300 chr7A 93.773 273 15 2 2581 2851 624928101 624927829 2.670000e-110 409.0
26 TraesCS1B01G321300 chr7A 93.750 272 15 2 2576 2845 599647354 599647083 9.620000e-110 407.0
27 TraesCS1B01G321300 chr7A 93.421 76 3 2 2463 2537 603090018 603090092 8.440000e-21 111.0
28 TraesCS1B01G321300 chr7A 91.228 57 5 0 2 58 245933498 245933442 8.560000e-11 78.7
29 TraesCS1B01G321300 chr6A 94.697 264 13 1 2583 2845 439231076 439230813 2.670000e-110 409.0
30 TraesCS1B01G321300 chr4A 93.407 273 16 2 2580 2850 250425036 250425308 1.240000e-108 403.0
31 TraesCS1B01G321300 chr3B 80.858 303 35 13 754 1036 574677863 574678162 1.740000e-52 217.0
32 TraesCS1B01G321300 chr3B 92.982 57 4 0 2 58 214544304 214544360 1.840000e-12 84.2
33 TraesCS1B01G321300 chr3D 76.601 406 51 27 762 1127 438566680 438567081 1.760000e-42 183.0
34 TraesCS1B01G321300 chr3D 88.281 128 10 3 2463 2587 26152386 26152261 6.440000e-32 148.0
35 TraesCS1B01G321300 chr3D 81.452 124 23 0 909 1032 438543069 438543192 5.080000e-18 102.0
36 TraesCS1B01G321300 chr5D 89.062 128 10 2 2463 2587 2786097 2786223 3.850000e-34 156.0
37 TraesCS1B01G321300 chr6B 89.655 116 10 2 2463 2577 643409147 643409033 2.310000e-31 147.0
38 TraesCS1B01G321300 chr6B 97.778 45 1 0 2 46 21063993 21064037 8.560000e-11 78.7
39 TraesCS1B01G321300 chr4D 86.822 129 11 4 2463 2587 440408333 440408207 3.870000e-29 139.0
40 TraesCS1B01G321300 chr7D 87.387 111 8 5 2454 2560 25364078 25364186 3.900000e-24 122.0
41 TraesCS1B01G321300 chr7D 85.106 94 12 2 55 148 402305879 402305788 8.500000e-16 95.3
42 TraesCS1B01G321300 chr7D 92.982 57 4 0 2 58 25136060 25136116 1.840000e-12 84.2
43 TraesCS1B01G321300 chrUn 93.421 76 3 2 2463 2537 281065556 281065482 8.440000e-21 111.0
44 TraesCS1B01G321300 chrUn 93.421 76 3 2 2463 2537 291669657 291669583 8.440000e-21 111.0
45 TraesCS1B01G321300 chr5A 89.286 84 8 1 65 148 697997911 697997993 1.410000e-18 104.0
46 TraesCS1B01G321300 chr5A 93.023 43 3 0 2242 2284 426356813 426356855 2.400000e-06 63.9
47 TraesCS1B01G321300 chr4B 84.211 95 13 2 55 149 641853455 641853363 1.100000e-14 91.6
48 TraesCS1B01G321300 chr4B 89.831 59 4 2 1 59 47495605 47495661 1.110000e-09 75.0
49 TraesCS1B01G321300 chr5B 92.982 57 4 0 2 58 216404546 216404490 1.840000e-12 84.2
50 TraesCS1B01G321300 chr7B 90.625 64 3 3 2 65 135391404 135391464 6.620000e-12 82.4
51 TraesCS1B01G321300 chr7B 92.982 57 3 1 2 58 720876197 720876142 6.620000e-12 82.4
52 TraesCS1B01G321300 chr2B 91.667 60 2 3 2 58 773993217 773993276 2.380000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G321300 chr1B 545275461 545278343 2882 True 5325.000 5325 100.0000 1 2883 1 chr1B.!!$R2 2882
1 TraesCS1B01G321300 chr1B 545165295 545165807 512 True 462.000 462 83.3010 1713 2222 1 chr1B.!!$R1 509
2 TraesCS1B01G321300 chr1D 405374578 405378585 4007 True 1492.500 2706 92.4765 153 2462 2 chr1D.!!$R2 2309
3 TraesCS1B01G321300 chr1D 405284766 405285748 982 True 482.000 542 84.9930 779 2214 2 chr1D.!!$R1 1435
4 TraesCS1B01G321300 chr1A 500841053 500843583 2530 True 776.325 2444 92.2105 55 2462 4 chr1A.!!$R4 2407
5 TraesCS1B01G321300 chr1A 500821963 500823384 1421 True 620.000 800 84.2035 774 2225 2 chr1A.!!$R3 1451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 2190 0.107361 CCATGCAGATGCTGGACTCA 60.107 55.0 14.43 0.0 39.83 3.41 F
1249 3129 0.035881 ACTCGTCCCTCGTAGTGTGA 59.964 55.0 0.00 0.0 40.80 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 3515 0.107456 CTGTGTGTCCAGCCAAGTCT 59.893 55.0 0.0 0.0 0.0 3.24 R
2558 4473 0.033366 TGCTGCTGAGAACGCTGTAA 59.967 50.0 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.731882 TTTCGTTGTACTACCATGATTGAAA 57.268 32.000 0.00 2.06 0.00 2.69
25 26 7.731882 TTCGTTGTACTACCATGATTGAAAA 57.268 32.000 0.00 0.00 0.00 2.29
26 27 7.915293 TCGTTGTACTACCATGATTGAAAAT 57.085 32.000 0.00 0.00 0.00 1.82
27 28 7.747888 TCGTTGTACTACCATGATTGAAAATG 58.252 34.615 0.00 0.00 0.00 2.32
28 29 7.604545 TCGTTGTACTACCATGATTGAAAATGA 59.395 33.333 0.00 0.00 0.00 2.57
29 30 8.233868 CGTTGTACTACCATGATTGAAAATGAA 58.766 33.333 0.00 0.00 0.00 2.57
38 39 9.204337 ACCATGATTGAAAATGAATAGATTGGA 57.796 29.630 0.00 0.00 0.00 3.53
103 104 8.985315 AGATGTCAAATTCTAGAATGGCATAA 57.015 30.769 20.70 7.51 0.00 1.90
104 105 9.064706 AGATGTCAAATTCTAGAATGGCATAAG 57.935 33.333 20.70 7.53 0.00 1.73
105 106 7.031226 TGTCAAATTCTAGAATGGCATAAGC 57.969 36.000 18.61 5.29 41.10 3.09
126 127 5.921004 GCAAAATGCACAATAAACTGGAA 57.079 34.783 0.00 0.00 44.26 3.53
129 130 6.621164 GCAAAATGCACAATAAACTGGAATGG 60.621 38.462 0.00 0.00 44.26 3.16
130 131 5.743636 AATGCACAATAAACTGGAATGGT 57.256 34.783 0.00 0.00 0.00 3.55
136 137 7.439655 TGCACAATAAACTGGAATGGTAAAAAC 59.560 33.333 0.00 0.00 0.00 2.43
148 149 7.285629 TGGAATGGTAAAAACAAAATTTTCCCC 59.714 33.333 0.00 0.00 34.51 4.81
150 151 5.123936 TGGTAAAAACAAAATTTTCCCCGG 58.876 37.500 0.00 0.00 34.51 5.73
151 152 4.515944 GGTAAAAACAAAATTTTCCCCGGG 59.484 41.667 15.80 15.80 34.51 5.73
188 189 2.171448 TCATTTTCTAGGGCCTCTCTGC 59.829 50.000 10.74 0.00 0.00 4.26
224 234 2.562738 GTCCTAAAAATGCCAACTGCCT 59.437 45.455 0.00 0.00 40.16 4.75
336 346 0.667487 CGTCACGATTCACACAGCCT 60.667 55.000 0.00 0.00 0.00 4.58
388 421 2.665185 AACGACGAGTGGCCAAGC 60.665 61.111 7.24 0.35 0.00 4.01
436 2132 4.800993 CAGTACTAACTCATGTGCTACTGC 59.199 45.833 0.00 0.00 34.85 4.40
437 2133 2.881074 ACTAACTCATGTGCTACTGCG 58.119 47.619 0.00 0.00 43.34 5.18
487 2183 1.453379 GACAGCCCATGCAGATGCT 60.453 57.895 6.35 0.00 42.66 3.79
492 2188 1.226542 CCCATGCAGATGCTGGACT 59.773 57.895 18.83 0.00 39.83 3.85
493 2189 0.818445 CCCATGCAGATGCTGGACTC 60.818 60.000 18.83 0.00 39.83 3.36
494 2190 0.107361 CCATGCAGATGCTGGACTCA 60.107 55.000 14.43 0.00 39.83 3.41
495 2191 1.015109 CATGCAGATGCTGGACTCAC 58.985 55.000 6.35 0.00 42.66 3.51
497 2193 1.560505 TGCAGATGCTGGACTCACTA 58.439 50.000 6.35 0.00 42.66 2.74
499 2195 3.299503 TGCAGATGCTGGACTCACTATA 58.700 45.455 6.35 0.00 42.66 1.31
500 2196 3.320256 TGCAGATGCTGGACTCACTATAG 59.680 47.826 6.35 0.00 42.66 1.31
501 2197 3.860378 GCAGATGCTGGACTCACTATAGC 60.860 52.174 0.00 0.00 38.21 2.97
502 2198 2.896685 AGATGCTGGACTCACTATAGCC 59.103 50.000 0.00 0.00 33.60 3.93
504 2200 2.034878 TGCTGGACTCACTATAGCCTG 58.965 52.381 0.00 0.00 33.60 4.85
505 2201 2.311463 GCTGGACTCACTATAGCCTGA 58.689 52.381 0.00 0.00 0.00 3.86
506 2202 2.035321 GCTGGACTCACTATAGCCTGAC 59.965 54.545 0.00 0.00 0.00 3.51
507 2203 2.625790 CTGGACTCACTATAGCCTGACC 59.374 54.545 0.00 0.94 0.00 4.02
508 2204 1.964933 GGACTCACTATAGCCTGACCC 59.035 57.143 0.00 0.00 0.00 4.46
509 2205 2.667470 GACTCACTATAGCCTGACCCA 58.333 52.381 0.00 0.00 0.00 4.51
510 2206 3.235200 GACTCACTATAGCCTGACCCAT 58.765 50.000 0.00 0.00 0.00 4.00
511 2207 3.643792 GACTCACTATAGCCTGACCCATT 59.356 47.826 0.00 0.00 0.00 3.16
512 2208 4.816126 ACTCACTATAGCCTGACCCATTA 58.184 43.478 0.00 0.00 0.00 1.90
515 2211 6.665680 ACTCACTATAGCCTGACCCATTATAG 59.334 42.308 0.00 0.00 32.94 1.31
517 2213 5.721960 CACTATAGCCTGACCCATTATAGGT 59.278 44.000 0.00 0.00 41.50 3.08
518 2214 6.213600 CACTATAGCCTGACCCATTATAGGTT 59.786 42.308 0.00 0.00 37.88 3.50
519 2215 3.864789 AGCCTGACCCATTATAGGTTG 57.135 47.619 0.00 0.00 37.88 3.77
521 2217 3.136626 AGCCTGACCCATTATAGGTTGAC 59.863 47.826 0.00 0.00 37.88 3.18
522 2218 3.118038 GCCTGACCCATTATAGGTTGACA 60.118 47.826 0.00 0.00 37.88 3.58
523 2219 4.451900 CCTGACCCATTATAGGTTGACAC 58.548 47.826 0.00 0.00 37.88 3.67
524 2220 4.080582 CCTGACCCATTATAGGTTGACACA 60.081 45.833 0.00 0.00 37.88 3.72
527 2223 7.201702 TGACCCATTATAGGTTGACACATTA 57.798 36.000 0.00 0.00 37.88 1.90
528 2224 7.051623 TGACCCATTATAGGTTGACACATTAC 58.948 38.462 0.00 0.00 37.88 1.89
529 2225 6.964464 ACCCATTATAGGTTGACACATTACA 58.036 36.000 0.00 0.00 32.05 2.41
530 2226 7.054124 ACCCATTATAGGTTGACACATTACAG 58.946 38.462 0.00 0.00 32.05 2.74
531 2227 7.092623 ACCCATTATAGGTTGACACATTACAGA 60.093 37.037 0.00 0.00 32.05 3.41
532 2228 7.939039 CCCATTATAGGTTGACACATTACAGAT 59.061 37.037 0.00 0.00 0.00 2.90
533 2229 8.993121 CCATTATAGGTTGACACATTACAGATC 58.007 37.037 0.00 0.00 0.00 2.75
534 2230 9.770097 CATTATAGGTTGACACATTACAGATCT 57.230 33.333 0.00 0.00 0.00 2.75
535 2231 9.770097 ATTATAGGTTGACACATTACAGATCTG 57.230 33.333 21.37 21.37 0.00 2.90
539 2255 5.288712 GGTTGACACATTACAGATCTGTACG 59.711 44.000 30.75 25.70 44.81 3.67
656 2477 1.302192 ACGGTACTTGTTGGCGCAT 60.302 52.632 10.83 0.00 0.00 4.73
690 2516 3.406361 CGCAGTTCGCAGTTCGCT 61.406 61.111 0.00 0.00 42.60 4.93
713 2539 1.350319 CGTTCGGCTCTCTCTCTCG 59.650 63.158 0.00 0.00 0.00 4.04
715 2541 1.078072 TTCGGCTCTCTCTCTCGCT 60.078 57.895 0.00 0.00 0.00 4.93
716 2542 0.678366 TTCGGCTCTCTCTCTCGCTT 60.678 55.000 0.00 0.00 0.00 4.68
730 2568 0.321298 TCGCTTAGGTTCCAGCCAAC 60.321 55.000 0.00 0.00 31.82 3.77
731 2569 1.305930 CGCTTAGGTTCCAGCCAACC 61.306 60.000 2.22 2.22 45.66 3.77
1246 3126 0.170561 CCAACTCGTCCCTCGTAGTG 59.829 60.000 0.00 0.00 40.80 2.74
1247 3127 0.879765 CAACTCGTCCCTCGTAGTGT 59.120 55.000 0.00 0.00 40.80 3.55
1248 3128 0.879765 AACTCGTCCCTCGTAGTGTG 59.120 55.000 0.00 0.00 40.80 3.82
1249 3129 0.035881 ACTCGTCCCTCGTAGTGTGA 59.964 55.000 0.00 0.00 40.80 3.58
1250 3130 1.339824 ACTCGTCCCTCGTAGTGTGAT 60.340 52.381 0.00 0.00 40.80 3.06
1251 3131 1.064208 CTCGTCCCTCGTAGTGTGATG 59.936 57.143 0.00 0.00 40.80 3.07
1252 3132 0.809385 CGTCCCTCGTAGTGTGATGT 59.191 55.000 0.00 0.00 34.52 3.06
1276 3165 3.751479 TCTTTGTCTACTCTGCAGCAA 57.249 42.857 9.47 3.27 0.00 3.91
1309 3198 8.230486 GCATTAATGGTACTGTACATGATTAGC 58.770 37.037 18.79 12.92 0.00 3.09
1357 3249 6.962182 TGATCCTTGTCTGATGGAAAACTAT 58.038 36.000 0.00 0.00 31.78 2.12
1385 3277 2.427453 GGACTCAAGTCGATCAGGCTAA 59.573 50.000 4.17 0.00 45.65 3.09
1408 3300 2.842394 ATCTTGAGCCCACGCACTCG 62.842 60.000 0.00 0.00 42.43 4.18
1462 3354 0.981183 ACCCGTATGTGAGGAAAGCA 59.019 50.000 0.00 0.00 0.00 3.91
1540 3432 4.479993 CAAGAGCTCCCCTGCCCG 62.480 72.222 10.93 0.00 0.00 6.13
1567 3459 1.303236 CGTTGGTCCTTGCATCCCA 60.303 57.895 0.00 0.00 0.00 4.37
1574 3466 2.381911 GTCCTTGCATCCCATTCATGT 58.618 47.619 0.00 0.00 0.00 3.21
1594 3486 1.214175 TCACTCCAAGAAAACCAGGCA 59.786 47.619 0.00 0.00 0.00 4.75
1610 3505 3.269178 CAGGCAGATTCAGAGGAAGAAC 58.731 50.000 0.00 0.00 36.25 3.01
1620 3515 3.646162 TCAGAGGAAGAACAAGGCTACAA 59.354 43.478 0.00 0.00 0.00 2.41
1684 3579 2.355193 ACTCGGCAGCTTCCTCTCC 61.355 63.158 0.00 0.00 0.00 3.71
1759 3654 2.119611 TTCCTCTGGGTGCTCCGA 59.880 61.111 0.00 0.00 38.76 4.55
1853 3762 1.639635 GGTCCTGTGCCATCCATCCT 61.640 60.000 0.00 0.00 0.00 3.24
1854 3763 0.179034 GTCCTGTGCCATCCATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
1893 3803 2.508891 CGGCATGAACTCGACGCTC 61.509 63.158 0.00 0.00 0.00 5.03
2071 3983 1.363744 CGTGAAGAGGCTGATGAACC 58.636 55.000 0.00 0.00 0.00 3.62
2072 3984 1.363744 GTGAAGAGGCTGATGAACCG 58.636 55.000 0.00 0.00 0.00 4.44
2073 3985 0.976641 TGAAGAGGCTGATGAACCGT 59.023 50.000 0.00 0.00 0.00 4.83
2074 3986 1.066858 TGAAGAGGCTGATGAACCGTC 60.067 52.381 0.00 0.00 0.00 4.79
2127 4039 1.748500 GCTGCTGAAGGAGGCTTCC 60.749 63.158 6.80 6.80 44.39 3.46
2294 4206 8.433126 CGTGGTTTTAGTTCAGAAATACTAGTG 58.567 37.037 5.39 0.00 0.00 2.74
2300 4212 6.051179 AGTTCAGAAATACTAGTGGGTTCC 57.949 41.667 5.39 0.00 0.00 3.62
2372 4284 4.768968 CCATTTCCAAATGAACTCTGGTCT 59.231 41.667 12.72 0.00 46.72 3.85
2405 4317 6.200878 TGGAATGGGGGAGATTTCTAATAC 57.799 41.667 0.00 0.00 0.00 1.89
2406 4318 5.674496 TGGAATGGGGGAGATTTCTAATACA 59.326 40.000 0.00 0.00 0.00 2.29
2414 4329 8.166726 GGGGGAGATTTCTAATACATTCAGAAT 58.833 37.037 0.00 0.00 0.00 2.40
2430 4345 9.388506 ACATTCAGAATAATCTCTTTGGTGTAG 57.611 33.333 0.00 0.00 32.03 2.74
2462 4377 3.508793 ACAAGATTCAATTGGTGGCAGAG 59.491 43.478 5.42 0.00 31.76 3.35
2463 4378 2.731572 AGATTCAATTGGTGGCAGAGG 58.268 47.619 5.42 0.00 0.00 3.69
2464 4379 1.753073 GATTCAATTGGTGGCAGAGGG 59.247 52.381 5.42 0.00 0.00 4.30
2465 4380 0.776810 TTCAATTGGTGGCAGAGGGA 59.223 50.000 5.42 0.00 0.00 4.20
2466 4381 0.776810 TCAATTGGTGGCAGAGGGAA 59.223 50.000 5.42 0.00 0.00 3.97
2467 4382 1.146774 TCAATTGGTGGCAGAGGGAAA 59.853 47.619 5.42 0.00 0.00 3.13
2468 4383 2.181975 CAATTGGTGGCAGAGGGAAAT 58.818 47.619 0.00 0.00 0.00 2.17
2469 4384 3.011144 TCAATTGGTGGCAGAGGGAAATA 59.989 43.478 5.42 0.00 0.00 1.40
2470 4385 2.507407 TTGGTGGCAGAGGGAAATAC 57.493 50.000 0.00 0.00 0.00 1.89
2471 4386 0.623723 TGGTGGCAGAGGGAAATACC 59.376 55.000 0.00 0.00 38.08 2.73
2484 4399 3.031013 GGAAATACCCAATGGTTCCTGG 58.969 50.000 10.99 0.00 44.75 4.45
2488 4403 4.764143 CCAATGGTTCCTGGGGAC 57.236 61.111 0.00 0.00 0.00 4.46
2489 4404 1.773635 CCAATGGTTCCTGGGGACA 59.226 57.895 0.08 0.00 39.59 4.02
2490 4405 0.336048 CCAATGGTTCCTGGGGACAT 59.664 55.000 0.08 0.00 41.51 3.06
2491 4406 1.686115 CCAATGGTTCCTGGGGACATC 60.686 57.143 0.08 0.00 41.51 3.06
2492 4407 1.285962 CAATGGTTCCTGGGGACATCT 59.714 52.381 0.08 0.00 41.51 2.90
2493 4408 0.921896 ATGGTTCCTGGGGACATCTG 59.078 55.000 0.08 0.00 41.51 2.90
2494 4409 0.475632 TGGTTCCTGGGGACATCTGT 60.476 55.000 0.08 0.00 41.51 3.41
2495 4410 0.253327 GGTTCCTGGGGACATCTGTC 59.747 60.000 1.59 1.59 44.04 3.51
2504 4419 3.688553 GACATCTGTCCCCGGAATC 57.311 57.895 0.73 0.00 39.07 2.52
2505 4420 1.123928 GACATCTGTCCCCGGAATCT 58.876 55.000 0.73 0.00 39.07 2.40
2506 4421 1.069358 GACATCTGTCCCCGGAATCTC 59.931 57.143 0.73 0.00 39.07 2.75
2507 4422 1.123077 CATCTGTCCCCGGAATCTCA 58.877 55.000 0.73 0.00 0.00 3.27
2508 4423 1.123928 ATCTGTCCCCGGAATCTCAC 58.876 55.000 0.73 0.00 0.00 3.51
2509 4424 0.976073 TCTGTCCCCGGAATCTCACC 60.976 60.000 0.73 0.00 0.00 4.02
2516 4431 3.274393 CGGAATCTCACCGGTCATC 57.726 57.895 2.59 0.00 45.65 2.92
2517 4432 0.249489 CGGAATCTCACCGGTCATCC 60.249 60.000 2.59 7.36 45.65 3.51
2527 4442 4.479993 GGTCATCCGCAGCTGCCT 62.480 66.667 32.07 14.87 37.91 4.75
2528 4443 2.501128 GTCATCCGCAGCTGCCTA 59.499 61.111 32.07 20.72 37.91 3.93
2529 4444 1.070445 GTCATCCGCAGCTGCCTAT 59.930 57.895 32.07 22.02 37.91 2.57
2530 4445 0.533755 GTCATCCGCAGCTGCCTATT 60.534 55.000 32.07 12.41 37.91 1.73
2531 4446 1.047801 TCATCCGCAGCTGCCTATTA 58.952 50.000 32.07 14.50 37.91 0.98
2532 4447 1.001293 TCATCCGCAGCTGCCTATTAG 59.999 52.381 32.07 16.93 37.91 1.73
2533 4448 1.051812 ATCCGCAGCTGCCTATTAGT 58.948 50.000 32.07 9.14 37.91 2.24
2534 4449 1.699730 TCCGCAGCTGCCTATTAGTA 58.300 50.000 32.07 1.25 37.91 1.82
2535 4450 2.248248 TCCGCAGCTGCCTATTAGTAT 58.752 47.619 32.07 0.00 37.91 2.12
2536 4451 3.427573 TCCGCAGCTGCCTATTAGTATA 58.572 45.455 32.07 3.32 37.91 1.47
2537 4452 3.444034 TCCGCAGCTGCCTATTAGTATAG 59.556 47.826 32.07 13.46 37.91 1.31
2538 4453 3.193691 CCGCAGCTGCCTATTAGTATAGT 59.806 47.826 32.07 0.00 37.91 2.12
2539 4454 4.322049 CCGCAGCTGCCTATTAGTATAGTT 60.322 45.833 32.07 0.00 37.91 2.24
2540 4455 5.105877 CCGCAGCTGCCTATTAGTATAGTTA 60.106 44.000 32.07 0.00 37.91 2.24
2541 4456 6.405953 CCGCAGCTGCCTATTAGTATAGTTAT 60.406 42.308 32.07 0.00 37.91 1.89
2542 4457 6.473778 CGCAGCTGCCTATTAGTATAGTTATG 59.526 42.308 32.07 8.09 37.91 1.90
2543 4458 7.324178 GCAGCTGCCTATTAGTATAGTTATGT 58.676 38.462 28.76 0.00 33.29 2.29
2544 4459 8.467598 GCAGCTGCCTATTAGTATAGTTATGTA 58.532 37.037 28.76 0.00 33.29 2.29
2545 4460 9.790389 CAGCTGCCTATTAGTATAGTTATGTAC 57.210 37.037 0.00 0.00 33.29 2.90
2546 4461 9.756571 AGCTGCCTATTAGTATAGTTATGTACT 57.243 33.333 0.00 0.00 41.04 2.73
2564 4479 6.939551 TGTACTTTCGTTCTGTATTACAGC 57.060 37.500 17.35 5.39 45.54 4.40
2565 4480 5.570206 TGTACTTTCGTTCTGTATTACAGCG 59.430 40.000 17.35 15.56 45.54 5.18
2566 4481 4.553323 ACTTTCGTTCTGTATTACAGCGT 58.447 39.130 17.35 4.70 45.54 5.07
2567 4482 4.986659 ACTTTCGTTCTGTATTACAGCGTT 59.013 37.500 17.35 2.99 45.54 4.84
2568 4483 5.118203 ACTTTCGTTCTGTATTACAGCGTTC 59.882 40.000 17.35 7.73 45.54 3.95
2569 4484 4.430137 TCGTTCTGTATTACAGCGTTCT 57.570 40.909 17.35 0.00 45.54 3.01
2570 4485 4.409570 TCGTTCTGTATTACAGCGTTCTC 58.590 43.478 17.35 4.94 45.54 2.87
2571 4486 4.083164 TCGTTCTGTATTACAGCGTTCTCA 60.083 41.667 17.35 0.00 45.54 3.27
2572 4487 4.263209 CGTTCTGTATTACAGCGTTCTCAG 59.737 45.833 17.35 1.71 45.54 3.35
2573 4488 3.770666 TCTGTATTACAGCGTTCTCAGC 58.229 45.455 17.35 0.00 45.54 4.26
2574 4489 3.192633 TCTGTATTACAGCGTTCTCAGCA 59.807 43.478 17.35 0.00 45.54 4.41
2575 4490 3.511699 TGTATTACAGCGTTCTCAGCAG 58.488 45.455 0.00 0.00 37.01 4.24
2576 4491 1.363744 ATTACAGCGTTCTCAGCAGC 58.636 50.000 0.00 0.00 37.01 5.25
2577 4492 0.033366 TTACAGCGTTCTCAGCAGCA 59.967 50.000 0.00 0.00 37.01 4.41
2578 4493 0.389037 TACAGCGTTCTCAGCAGCAG 60.389 55.000 0.00 0.00 37.01 4.24
2579 4494 1.667191 CAGCGTTCTCAGCAGCAGT 60.667 57.895 0.00 0.00 37.01 4.40
2580 4495 1.070445 AGCGTTCTCAGCAGCAGTT 59.930 52.632 0.00 0.00 37.01 3.16
2581 4496 0.948141 AGCGTTCTCAGCAGCAGTTC 60.948 55.000 0.00 0.00 37.01 3.01
2582 4497 0.948141 GCGTTCTCAGCAGCAGTTCT 60.948 55.000 0.00 0.00 34.19 3.01
2583 4498 1.506493 CGTTCTCAGCAGCAGTTCTT 58.494 50.000 0.00 0.00 0.00 2.52
2584 4499 1.194098 CGTTCTCAGCAGCAGTTCTTG 59.806 52.381 0.00 0.00 0.00 3.02
2585 4500 2.216898 GTTCTCAGCAGCAGTTCTTGT 58.783 47.619 0.00 0.00 0.00 3.16
2586 4501 3.393800 GTTCTCAGCAGCAGTTCTTGTA 58.606 45.455 0.00 0.00 0.00 2.41
2587 4502 3.032017 TCTCAGCAGCAGTTCTTGTAC 57.968 47.619 0.00 0.00 0.00 2.90
2588 4503 2.630098 TCTCAGCAGCAGTTCTTGTACT 59.370 45.455 0.00 0.00 0.00 2.73
2589 4504 2.992543 CTCAGCAGCAGTTCTTGTACTC 59.007 50.000 0.00 0.00 0.00 2.59
2590 4505 2.072298 CAGCAGCAGTTCTTGTACTCC 58.928 52.381 0.00 0.00 0.00 3.85
2591 4506 1.002544 AGCAGCAGTTCTTGTACTCCC 59.997 52.381 0.00 0.00 0.00 4.30
2592 4507 1.002544 GCAGCAGTTCTTGTACTCCCT 59.997 52.381 0.00 0.00 0.00 4.20
2593 4508 2.933056 GCAGCAGTTCTTGTACTCCCTC 60.933 54.545 0.00 0.00 0.00 4.30
2594 4509 1.903183 AGCAGTTCTTGTACTCCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
2595 4510 1.404315 GCAGTTCTTGTACTCCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
2596 4511 1.893801 CAGTTCTTGTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
2597 4512 2.299297 CAGTTCTTGTACTCCCTCCGTT 59.701 50.000 0.00 0.00 0.00 4.44
2598 4513 2.970640 AGTTCTTGTACTCCCTCCGTTT 59.029 45.455 0.00 0.00 0.00 3.60
2599 4514 3.390311 AGTTCTTGTACTCCCTCCGTTTT 59.610 43.478 0.00 0.00 0.00 2.43
2600 4515 4.132336 GTTCTTGTACTCCCTCCGTTTTT 58.868 43.478 0.00 0.00 0.00 1.94
2601 4516 5.070847 AGTTCTTGTACTCCCTCCGTTTTTA 59.929 40.000 0.00 0.00 0.00 1.52
2602 4517 5.750352 TCTTGTACTCCCTCCGTTTTTAT 57.250 39.130 0.00 0.00 0.00 1.40
2603 4518 6.117975 TCTTGTACTCCCTCCGTTTTTATT 57.882 37.500 0.00 0.00 0.00 1.40
2604 4519 6.536447 TCTTGTACTCCCTCCGTTTTTATTT 58.464 36.000 0.00 0.00 0.00 1.40
2605 4520 7.678837 TCTTGTACTCCCTCCGTTTTTATTTA 58.321 34.615 0.00 0.00 0.00 1.40
2606 4521 7.603784 TCTTGTACTCCCTCCGTTTTTATTTAC 59.396 37.037 0.00 0.00 0.00 2.01
2607 4522 7.008021 TGTACTCCCTCCGTTTTTATTTACT 57.992 36.000 0.00 0.00 0.00 2.24
2608 4523 7.099120 TGTACTCCCTCCGTTTTTATTTACTC 58.901 38.462 0.00 0.00 0.00 2.59
2609 4524 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
2610 4525 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
2611 4526 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
2612 4527 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
2613 4528 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
2614 4529 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
2615 4530 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
2616 4531 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
2631 4546 8.659925 CTCTGCATATTAGAGTTGATTGAAGT 57.340 34.615 5.84 0.00 37.48 3.01
2632 4547 8.654230 TCTGCATATTAGAGTTGATTGAAGTC 57.346 34.615 0.00 0.00 34.56 3.01
2633 4548 8.260114 TCTGCATATTAGAGTTGATTGAAGTCA 58.740 33.333 0.00 0.00 36.57 3.41
2634 4549 8.791327 TGCATATTAGAGTTGATTGAAGTCAA 57.209 30.769 0.00 0.00 36.57 3.18
2654 4569 6.928979 TCAATCTTCGTAAAGTTTGACCAA 57.071 33.333 0.00 0.00 42.30 3.67
2655 4570 6.954944 TCAATCTTCGTAAAGTTTGACCAAG 58.045 36.000 0.00 0.00 42.30 3.61
2656 4571 6.540914 TCAATCTTCGTAAAGTTTGACCAAGT 59.459 34.615 0.00 0.00 42.30 3.16
2657 4572 6.937436 ATCTTCGTAAAGTTTGACCAAGTT 57.063 33.333 0.00 0.00 33.95 2.66
2658 4573 6.354039 TCTTCGTAAAGTTTGACCAAGTTC 57.646 37.500 0.00 0.00 33.95 3.01
2659 4574 5.875910 TCTTCGTAAAGTTTGACCAAGTTCA 59.124 36.000 0.00 0.00 33.95 3.18
2660 4575 6.540914 TCTTCGTAAAGTTTGACCAAGTTCAT 59.459 34.615 0.00 0.00 33.95 2.57
2661 4576 7.711772 TCTTCGTAAAGTTTGACCAAGTTCATA 59.288 33.333 0.00 0.00 33.95 2.15
2662 4577 7.416154 TCGTAAAGTTTGACCAAGTTCATAG 57.584 36.000 0.00 0.00 0.00 2.23
2663 4578 7.211573 TCGTAAAGTTTGACCAAGTTCATAGA 58.788 34.615 0.00 0.00 0.00 1.98
2664 4579 7.711772 TCGTAAAGTTTGACCAAGTTCATAGAA 59.288 33.333 0.00 0.00 0.00 2.10
2665 4580 8.339714 CGTAAAGTTTGACCAAGTTCATAGAAA 58.660 33.333 0.00 0.00 0.00 2.52
2806 4721 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
2807 4722 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
2808 4723 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
2824 4739 7.759489 TTTGACCAAAGCTAATATGTGAACT 57.241 32.000 0.00 0.00 0.00 3.01
2825 4740 8.856153 TTTGACCAAAGCTAATATGTGAACTA 57.144 30.769 0.00 0.00 0.00 2.24
2826 4741 8.856153 TTGACCAAAGCTAATATGTGAACTAA 57.144 30.769 0.00 0.00 0.00 2.24
2827 4742 8.856153 TGACCAAAGCTAATATGTGAACTAAA 57.144 30.769 0.00 0.00 0.00 1.85
2828 4743 9.461312 TGACCAAAGCTAATATGTGAACTAAAT 57.539 29.630 0.00 0.00 0.00 1.40
2840 4755 6.563222 TGTGAACTAAATAAAAACGGAGGG 57.437 37.500 0.00 0.00 0.00 4.30
2841 4756 6.297582 TGTGAACTAAATAAAAACGGAGGGA 58.702 36.000 0.00 0.00 0.00 4.20
2842 4757 6.428771 TGTGAACTAAATAAAAACGGAGGGAG 59.571 38.462 0.00 0.00 0.00 4.30
2843 4758 6.429078 GTGAACTAAATAAAAACGGAGGGAGT 59.571 38.462 0.00 0.00 0.00 3.85
2844 4759 7.603784 GTGAACTAAATAAAAACGGAGGGAGTA 59.396 37.037 0.00 0.00 0.00 2.59
2845 4760 8.323567 TGAACTAAATAAAAACGGAGGGAGTAT 58.676 33.333 0.00 0.00 0.00 2.12
2846 4761 9.170734 GAACTAAATAAAAACGGAGGGAGTATT 57.829 33.333 0.00 0.00 0.00 1.89
2847 4762 9.524496 AACTAAATAAAAACGGAGGGAGTATTT 57.476 29.630 0.00 0.00 0.00 1.40
2848 4763 9.524496 ACTAAATAAAAACGGAGGGAGTATTTT 57.476 29.630 0.00 0.00 0.00 1.82
2849 4764 9.783256 CTAAATAAAAACGGAGGGAGTATTTTG 57.217 33.333 0.00 0.00 0.00 2.44
2850 4765 8.411991 AAATAAAAACGGAGGGAGTATTTTGA 57.588 30.769 0.00 0.00 0.00 2.69
2851 4766 8.589701 AATAAAAACGGAGGGAGTATTTTGAT 57.410 30.769 0.00 0.00 0.00 2.57
2852 4767 6.911250 AAAAACGGAGGGAGTATTTTGATT 57.089 33.333 0.00 0.00 0.00 2.57
2853 4768 6.510879 AAAACGGAGGGAGTATTTTGATTC 57.489 37.500 0.00 0.00 0.00 2.52
2854 4769 4.152284 ACGGAGGGAGTATTTTGATTCC 57.848 45.455 0.00 0.00 0.00 3.01
2855 4770 3.780850 ACGGAGGGAGTATTTTGATTCCT 59.219 43.478 0.00 0.00 0.00 3.36
2856 4771 4.227527 ACGGAGGGAGTATTTTGATTCCTT 59.772 41.667 0.00 0.00 0.00 3.36
2857 4772 4.816925 CGGAGGGAGTATTTTGATTCCTTC 59.183 45.833 0.00 0.00 35.68 3.46
2858 4773 4.816925 GGAGGGAGTATTTTGATTCCTTCG 59.183 45.833 0.00 0.00 36.86 3.79
2859 4774 4.781934 AGGGAGTATTTTGATTCCTTCGG 58.218 43.478 0.00 0.00 0.00 4.30
2860 4775 4.227527 AGGGAGTATTTTGATTCCTTCGGT 59.772 41.667 0.00 0.00 0.00 4.69
2861 4776 4.575236 GGGAGTATTTTGATTCCTTCGGTC 59.425 45.833 0.00 0.00 0.00 4.79
2862 4777 4.575236 GGAGTATTTTGATTCCTTCGGTCC 59.425 45.833 0.00 0.00 0.00 4.46
2863 4778 5.174037 AGTATTTTGATTCCTTCGGTCCA 57.826 39.130 0.00 0.00 0.00 4.02
2864 4779 5.186198 AGTATTTTGATTCCTTCGGTCCAG 58.814 41.667 0.00 0.00 0.00 3.86
2865 4780 3.502123 TTTTGATTCCTTCGGTCCAGT 57.498 42.857 0.00 0.00 0.00 4.00
2866 4781 3.502123 TTTGATTCCTTCGGTCCAGTT 57.498 42.857 0.00 0.00 0.00 3.16
2867 4782 3.502123 TTGATTCCTTCGGTCCAGTTT 57.498 42.857 0.00 0.00 0.00 2.66
2868 4783 2.778299 TGATTCCTTCGGTCCAGTTTG 58.222 47.619 0.00 0.00 0.00 2.93
2869 4784 2.370519 TGATTCCTTCGGTCCAGTTTGA 59.629 45.455 0.00 0.00 0.00 2.69
2870 4785 2.249844 TTCCTTCGGTCCAGTTTGAC 57.750 50.000 0.00 0.00 34.42 3.18
2871 4786 1.124780 TCCTTCGGTCCAGTTTGACA 58.875 50.000 0.00 0.00 36.97 3.58
2872 4787 1.697432 TCCTTCGGTCCAGTTTGACAT 59.303 47.619 0.00 0.00 36.97 3.06
2873 4788 1.806542 CCTTCGGTCCAGTTTGACATG 59.193 52.381 0.00 0.00 36.97 3.21
2874 4789 2.494059 CTTCGGTCCAGTTTGACATGT 58.506 47.619 0.00 0.00 36.97 3.21
2875 4790 1.877637 TCGGTCCAGTTTGACATGTG 58.122 50.000 1.15 0.00 36.97 3.21
2876 4791 0.874390 CGGTCCAGTTTGACATGTGG 59.126 55.000 1.15 0.00 36.97 4.17
2877 4792 0.598065 GGTCCAGTTTGACATGTGGC 59.402 55.000 1.15 0.00 36.97 5.01
2878 4793 0.598065 GTCCAGTTTGACATGTGGCC 59.402 55.000 1.15 0.00 35.29 5.36
2879 4794 0.539438 TCCAGTTTGACATGTGGCCC 60.539 55.000 1.15 0.00 0.00 5.80
2880 4795 1.535204 CCAGTTTGACATGTGGCCCC 61.535 60.000 1.15 0.00 0.00 5.80
2881 4796 0.827089 CAGTTTGACATGTGGCCCCA 60.827 55.000 1.15 0.00 0.00 4.96
2882 4797 0.827507 AGTTTGACATGTGGCCCCAC 60.828 55.000 1.15 10.49 46.33 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.731882 TTTCAATCATGGTAGTACAACGAAA 57.268 32.000 2.06 0.00 0.00 3.46
1 2 7.731882 TTTTCAATCATGGTAGTACAACGAA 57.268 32.000 2.06 0.00 0.00 3.85
2 3 7.604545 TCATTTTCAATCATGGTAGTACAACGA 59.395 33.333 2.06 0.00 0.00 3.85
3 4 7.747888 TCATTTTCAATCATGGTAGTACAACG 58.252 34.615 2.06 0.00 0.00 4.10
12 13 9.204337 TCCAATCTATTCATTTTCAATCATGGT 57.796 29.630 0.00 0.00 0.00 3.55
57 58 9.574516 ACATCTTAATTTTGTCACTCTTAACCT 57.425 29.630 0.00 0.00 0.00 3.50
58 59 9.827411 GACATCTTAATTTTGTCACTCTTAACC 57.173 33.333 7.38 0.00 39.59 2.85
75 76 8.806429 TGCCATTCTAGAATTTGACATCTTAA 57.194 30.769 15.49 0.00 0.00 1.85
77 78 7.893124 ATGCCATTCTAGAATTTGACATCTT 57.107 32.000 15.49 0.00 0.00 2.40
93 94 3.933955 TGTGCATTTTGCTTATGCCATTC 59.066 39.130 13.20 5.15 46.05 2.67
98 99 6.957077 CAGTTTATTGTGCATTTTGCTTATGC 59.043 34.615 10.14 10.14 45.31 3.14
103 104 5.212532 TCCAGTTTATTGTGCATTTTGCT 57.787 34.783 0.00 0.00 45.31 3.91
104 105 5.921004 TTCCAGTTTATTGTGCATTTTGC 57.079 34.783 0.00 0.00 45.29 3.68
105 106 6.427547 ACCATTCCAGTTTATTGTGCATTTTG 59.572 34.615 0.00 0.00 0.00 2.44
112 113 8.879342 TGTTTTTACCATTCCAGTTTATTGTG 57.121 30.769 0.00 0.00 0.00 3.33
129 130 5.366460 TCCCGGGGAAAATTTTGTTTTTAC 58.634 37.500 23.50 0.00 0.00 2.01
130 131 5.625568 TCCCGGGGAAAATTTTGTTTTTA 57.374 34.783 23.50 0.00 0.00 1.52
136 137 3.070302 TGTTCTTCCCGGGGAAAATTTTG 59.930 43.478 27.71 15.74 41.54 2.44
140 141 2.311841 AGATGTTCTTCCCGGGGAAAAT 59.688 45.455 27.71 17.52 41.54 1.82
243 253 3.564027 GAGATCCGCCGCAAACCG 61.564 66.667 0.00 0.00 0.00 4.44
336 346 1.887198 GAAGTGAGAGACGAACTGGGA 59.113 52.381 0.00 0.00 0.00 4.37
388 421 0.664466 TCGTCGTTGCAGCTCTCTTG 60.664 55.000 0.00 0.00 0.00 3.02
413 453 4.800993 GCAGTAGCACATGAGTTAGTACTG 59.199 45.833 5.39 9.20 41.58 2.74
436 2132 3.359654 CAGTCCCTTTGTTTTCGAAACG 58.640 45.455 10.79 0.00 0.00 3.60
437 2133 3.379057 TCCAGTCCCTTTGTTTTCGAAAC 59.621 43.478 10.79 6.80 0.00 2.78
487 2183 2.667470 GGTCAGGCTATAGTGAGTCCA 58.333 52.381 0.84 0.00 0.00 4.02
492 2188 5.958380 CCTATAATGGGTCAGGCTATAGTGA 59.042 44.000 0.84 0.00 0.00 3.41
493 2189 5.721960 ACCTATAATGGGTCAGGCTATAGTG 59.278 44.000 0.84 0.00 30.15 2.74
494 2190 5.916806 ACCTATAATGGGTCAGGCTATAGT 58.083 41.667 0.84 0.00 30.15 2.12
495 2191 6.440647 TCAACCTATAATGGGTCAGGCTATAG 59.559 42.308 0.00 0.00 35.83 1.31
497 2193 5.013183 GTCAACCTATAATGGGTCAGGCTAT 59.987 44.000 0.00 0.00 35.83 2.97
499 2195 3.136626 GTCAACCTATAATGGGTCAGGCT 59.863 47.826 0.00 0.00 35.83 4.58
500 2196 3.118038 TGTCAACCTATAATGGGTCAGGC 60.118 47.826 0.00 0.00 35.83 4.85
501 2197 4.080582 TGTGTCAACCTATAATGGGTCAGG 60.081 45.833 0.00 0.00 35.83 3.86
502 2198 5.097742 TGTGTCAACCTATAATGGGTCAG 57.902 43.478 0.00 0.00 35.83 3.51
504 2200 7.051623 TGTAATGTGTCAACCTATAATGGGTC 58.948 38.462 0.00 0.00 35.83 4.46
505 2201 6.964464 TGTAATGTGTCAACCTATAATGGGT 58.036 36.000 0.00 0.00 38.94 4.51
506 2202 7.279615 TCTGTAATGTGTCAACCTATAATGGG 58.720 38.462 0.00 0.00 0.00 4.00
507 2203 8.908786 ATCTGTAATGTGTCAACCTATAATGG 57.091 34.615 0.00 0.00 0.00 3.16
508 2204 9.770097 AGATCTGTAATGTGTCAACCTATAATG 57.230 33.333 0.00 0.00 0.00 1.90
509 2205 9.770097 CAGATCTGTAATGTGTCAACCTATAAT 57.230 33.333 14.95 0.00 0.00 1.28
510 2206 8.758829 ACAGATCTGTAATGTGTCAACCTATAA 58.241 33.333 26.87 0.00 42.90 0.98
511 2207 8.306313 ACAGATCTGTAATGTGTCAACCTATA 57.694 34.615 26.87 0.00 42.90 1.31
512 2208 7.187824 ACAGATCTGTAATGTGTCAACCTAT 57.812 36.000 26.87 0.00 42.90 2.57
515 2211 5.288712 CGTACAGATCTGTAATGTGTCAACC 59.711 44.000 32.01 16.90 46.33 3.77
517 2213 4.862574 GCGTACAGATCTGTAATGTGTCAA 59.137 41.667 32.01 10.74 46.33 3.18
518 2214 4.082463 TGCGTACAGATCTGTAATGTGTCA 60.082 41.667 32.01 20.40 46.33 3.58
519 2215 4.421058 TGCGTACAGATCTGTAATGTGTC 58.579 43.478 32.01 19.37 46.33 3.67
521 2217 5.631096 CCTATGCGTACAGATCTGTAATGTG 59.369 44.000 32.01 22.78 46.33 3.21
522 2218 5.302059 ACCTATGCGTACAGATCTGTAATGT 59.698 40.000 32.01 21.10 46.33 2.71
523 2219 5.773575 ACCTATGCGTACAGATCTGTAATG 58.226 41.667 32.01 26.89 46.33 1.90
524 2220 6.216569 CAACCTATGCGTACAGATCTGTAAT 58.783 40.000 32.01 24.35 46.33 1.89
527 2223 3.738281 GCAACCTATGCGTACAGATCTGT 60.738 47.826 30.11 30.11 46.87 3.41
528 2224 2.797156 GCAACCTATGCGTACAGATCTG 59.203 50.000 21.37 21.37 46.87 2.90
529 2225 3.099267 GCAACCTATGCGTACAGATCT 57.901 47.619 0.00 0.00 46.87 2.75
620 2349 2.421314 GGTGTGGTGGGCTTTTGC 59.579 61.111 0.00 0.00 46.64 3.68
656 2477 1.215382 CGAATCGTGCCTCTGTCCA 59.785 57.895 0.00 0.00 0.00 4.02
701 2527 1.675552 ACCTAAGCGAGAGAGAGAGC 58.324 55.000 0.00 0.00 0.00 4.09
713 2539 0.965866 GGGTTGGCTGGAACCTAAGC 60.966 60.000 11.13 0.00 44.35 3.09
715 2541 1.068943 TGGGGTTGGCTGGAACCTAA 61.069 55.000 11.13 0.64 44.35 2.69
716 2542 1.464395 TGGGGTTGGCTGGAACCTA 60.464 57.895 11.13 0.00 44.35 3.08
806 2644 0.037697 ACAGGTTCAGCATCGCGTTA 60.038 50.000 5.77 0.00 0.00 3.18
1246 3126 6.128688 GCAGAGTAGACAAAGAAGAACATCAC 60.129 42.308 0.00 0.00 0.00 3.06
1247 3127 5.928839 GCAGAGTAGACAAAGAAGAACATCA 59.071 40.000 0.00 0.00 0.00 3.07
1248 3128 5.928839 TGCAGAGTAGACAAAGAAGAACATC 59.071 40.000 0.00 0.00 0.00 3.06
1249 3129 5.858381 TGCAGAGTAGACAAAGAAGAACAT 58.142 37.500 0.00 0.00 0.00 2.71
1250 3130 5.276461 TGCAGAGTAGACAAAGAAGAACA 57.724 39.130 0.00 0.00 0.00 3.18
1251 3131 4.151512 GCTGCAGAGTAGACAAAGAAGAAC 59.848 45.833 20.43 0.00 0.00 3.01
1252 3132 4.202253 TGCTGCAGAGTAGACAAAGAAGAA 60.202 41.667 20.43 0.00 0.00 2.52
1276 3165 3.282021 CAGTACCATTAATGCACTGGCT 58.718 45.455 25.95 11.33 41.91 4.75
1309 3198 5.821470 AGTGACATCTGCATGAGATTTAAGG 59.179 40.000 0.00 0.00 39.64 2.69
1357 3249 4.278310 TGATCGACTTGAGTCCAGGAATA 58.722 43.478 5.61 0.00 41.86 1.75
1385 3277 2.579201 CGTGGGCTCAAGATCGGT 59.421 61.111 0.00 0.00 0.00 4.69
1408 3300 3.350219 TTGTCCAGCCTAATCTTGTCC 57.650 47.619 0.00 0.00 0.00 4.02
1462 3354 3.328931 AGGAGGTGAAGATGACACATTGT 59.671 43.478 0.00 0.00 39.65 2.71
1540 3432 1.388837 AAGGACCAACGGCAAACACC 61.389 55.000 0.00 0.00 0.00 4.16
1567 3459 5.139727 TGGTTTTCTTGGAGTGACATGAAT 58.860 37.500 0.00 0.00 35.37 2.57
1574 3466 1.214175 TGCCTGGTTTTCTTGGAGTGA 59.786 47.619 0.00 0.00 0.00 3.41
1594 3486 3.586618 AGCCTTGTTCTTCCTCTGAATCT 59.413 43.478 0.00 0.00 0.00 2.40
1610 3505 1.808945 CAGCCAAGTCTTGTAGCCTTG 59.191 52.381 11.61 1.30 36.26 3.61
1620 3515 0.107456 CTGTGTGTCCAGCCAAGTCT 59.893 55.000 0.00 0.00 0.00 3.24
2071 3983 2.880879 CTCGCCATCACCACGACG 60.881 66.667 0.00 0.00 0.00 5.12
2072 3984 2.509336 CCTCGCCATCACCACGAC 60.509 66.667 0.00 0.00 0.00 4.34
2073 3985 3.770040 CCCTCGCCATCACCACGA 61.770 66.667 0.00 0.00 0.00 4.35
2294 4206 4.684703 CGAATACATCACGATAAGGAACCC 59.315 45.833 0.00 0.00 0.00 4.11
2300 4212 7.548673 TCGAATTCGAATACATCACGATAAG 57.451 36.000 27.36 0.00 46.30 1.73
2326 4238 4.822896 GTGGAGTACTAGCAGCTACTACAT 59.177 45.833 11.28 2.74 36.43 2.29
2372 4284 4.731416 TCTCCCCCATTCCATGAGAAAATA 59.269 41.667 0.00 0.00 38.21 1.40
2405 4317 9.388506 ACTACACCAAAGAGATTATTCTGAATG 57.611 33.333 13.01 0.00 30.30 2.67
2414 4329 7.934665 TGCAAGTTTACTACACCAAAGAGATTA 59.065 33.333 0.00 0.00 0.00 1.75
2430 4345 6.701400 ACCAATTGAATCTTGTGCAAGTTTAC 59.299 34.615 7.12 5.51 39.38 2.01
2471 4386 0.336048 ATGTCCCCAGGAACCATTGG 59.664 55.000 0.00 0.00 31.38 3.16
2472 4387 1.285962 AGATGTCCCCAGGAACCATTG 59.714 52.381 0.00 0.00 31.38 2.82
2473 4388 1.285962 CAGATGTCCCCAGGAACCATT 59.714 52.381 0.00 0.00 31.38 3.16
2474 4389 0.921896 CAGATGTCCCCAGGAACCAT 59.078 55.000 0.00 0.00 31.38 3.55
2475 4390 0.475632 ACAGATGTCCCCAGGAACCA 60.476 55.000 0.00 0.00 31.38 3.67
2476 4391 0.253327 GACAGATGTCCCCAGGAACC 59.747 60.000 1.33 0.00 39.07 3.62
2477 4392 3.863407 GACAGATGTCCCCAGGAAC 57.137 57.895 1.33 0.00 39.07 3.62
2486 4401 1.069358 GAGATTCCGGGGACAGATGTC 59.931 57.143 0.00 4.33 44.04 3.06
2487 4402 1.123928 GAGATTCCGGGGACAGATGT 58.876 55.000 0.00 0.00 0.00 3.06
2488 4403 1.123077 TGAGATTCCGGGGACAGATG 58.877 55.000 0.00 0.00 0.00 2.90
2489 4404 1.123928 GTGAGATTCCGGGGACAGAT 58.876 55.000 0.00 0.00 0.00 2.90
2490 4405 0.976073 GGTGAGATTCCGGGGACAGA 60.976 60.000 0.00 0.00 0.00 3.41
2491 4406 1.522569 GGTGAGATTCCGGGGACAG 59.477 63.158 0.00 0.00 0.00 3.51
2492 4407 2.355986 CGGTGAGATTCCGGGGACA 61.356 63.158 0.00 0.00 43.68 4.02
2493 4408 2.499685 CGGTGAGATTCCGGGGAC 59.500 66.667 0.00 0.00 43.68 4.46
2498 4413 0.249489 GGATGACCGGTGAGATTCCG 60.249 60.000 14.63 0.00 46.49 4.30
2499 4414 3.688553 GGATGACCGGTGAGATTCC 57.311 57.895 14.63 3.51 0.00 3.01
2510 4425 2.388890 ATAGGCAGCTGCGGATGACC 62.389 60.000 31.19 14.23 37.65 4.02
2511 4426 0.533755 AATAGGCAGCTGCGGATGAC 60.534 55.000 31.19 13.04 43.26 3.06
2512 4427 1.001293 CTAATAGGCAGCTGCGGATGA 59.999 52.381 31.19 18.53 43.26 2.92
2513 4428 1.270518 ACTAATAGGCAGCTGCGGATG 60.271 52.381 31.19 19.98 43.26 3.51
2514 4429 1.051812 ACTAATAGGCAGCTGCGGAT 58.948 50.000 31.19 23.07 43.26 4.18
2515 4430 1.699730 TACTAATAGGCAGCTGCGGA 58.300 50.000 31.19 21.86 43.26 5.54
2516 4431 2.751166 ATACTAATAGGCAGCTGCGG 57.249 50.000 31.19 17.95 43.26 5.69
2517 4432 4.442375 ACTATACTAATAGGCAGCTGCG 57.558 45.455 31.19 18.93 43.26 5.18
2518 4433 7.324178 ACATAACTATACTAATAGGCAGCTGC 58.676 38.462 30.88 30.88 39.63 5.25
2519 4434 9.790389 GTACATAACTATACTAATAGGCAGCTG 57.210 37.037 10.11 10.11 39.63 4.24
2520 4435 9.756571 AGTACATAACTATACTAATAGGCAGCT 57.243 33.333 0.00 0.00 39.63 4.24
2554 4469 3.511699 CTGCTGAGAACGCTGTAATACA 58.488 45.455 0.00 0.00 0.00 2.29
2555 4470 2.282820 GCTGCTGAGAACGCTGTAATAC 59.717 50.000 0.00 0.00 0.00 1.89
2556 4471 2.094234 TGCTGCTGAGAACGCTGTAATA 60.094 45.455 0.00 0.00 0.00 0.98
2557 4472 1.338105 TGCTGCTGAGAACGCTGTAAT 60.338 47.619 0.00 0.00 0.00 1.89
2558 4473 0.033366 TGCTGCTGAGAACGCTGTAA 59.967 50.000 0.00 0.00 0.00 2.41
2559 4474 0.389037 CTGCTGCTGAGAACGCTGTA 60.389 55.000 0.00 0.00 0.00 2.74
2560 4475 1.667191 CTGCTGCTGAGAACGCTGT 60.667 57.895 0.00 0.00 0.00 4.40
2561 4476 1.226686 AACTGCTGCTGAGAACGCTG 61.227 55.000 13.69 0.00 0.00 5.18
2562 4477 0.948141 GAACTGCTGCTGAGAACGCT 60.948 55.000 13.69 0.00 0.00 5.07
2563 4478 0.948141 AGAACTGCTGCTGAGAACGC 60.948 55.000 13.69 0.00 0.00 4.84
2564 4479 1.194098 CAAGAACTGCTGCTGAGAACG 59.806 52.381 13.69 0.00 0.00 3.95
2565 4480 2.216898 ACAAGAACTGCTGCTGAGAAC 58.783 47.619 13.69 2.09 0.00 3.01
2566 4481 2.627515 ACAAGAACTGCTGCTGAGAA 57.372 45.000 13.69 0.00 0.00 2.87
2567 4482 2.630098 AGTACAAGAACTGCTGCTGAGA 59.370 45.455 13.69 0.00 0.00 3.27
2568 4483 2.992543 GAGTACAAGAACTGCTGCTGAG 59.007 50.000 13.69 0.00 0.00 3.35
2569 4484 2.289072 GGAGTACAAGAACTGCTGCTGA 60.289 50.000 13.69 0.00 35.17 4.26
2570 4485 2.072298 GGAGTACAAGAACTGCTGCTG 58.928 52.381 4.89 4.89 35.17 4.41
2571 4486 1.002544 GGGAGTACAAGAACTGCTGCT 59.997 52.381 0.00 0.00 37.89 4.24
2572 4487 1.002544 AGGGAGTACAAGAACTGCTGC 59.997 52.381 0.00 0.00 37.89 5.25
2573 4488 2.354203 GGAGGGAGTACAAGAACTGCTG 60.354 54.545 0.00 0.00 37.89 4.41
2574 4489 1.903183 GGAGGGAGTACAAGAACTGCT 59.097 52.381 0.00 0.00 37.89 4.24
2575 4490 1.404315 CGGAGGGAGTACAAGAACTGC 60.404 57.143 0.00 0.00 37.12 4.40
2576 4491 1.893801 ACGGAGGGAGTACAAGAACTG 59.106 52.381 0.00 0.00 0.00 3.16
2577 4492 2.305858 ACGGAGGGAGTACAAGAACT 57.694 50.000 0.00 0.00 0.00 3.01
2578 4493 3.397849 AAACGGAGGGAGTACAAGAAC 57.602 47.619 0.00 0.00 0.00 3.01
2579 4494 4.426736 AAAAACGGAGGGAGTACAAGAA 57.573 40.909 0.00 0.00 0.00 2.52
2580 4495 5.750352 ATAAAAACGGAGGGAGTACAAGA 57.250 39.130 0.00 0.00 0.00 3.02
2581 4496 6.812879 AAATAAAAACGGAGGGAGTACAAG 57.187 37.500 0.00 0.00 0.00 3.16
2582 4497 7.452562 AGTAAATAAAAACGGAGGGAGTACAA 58.547 34.615 0.00 0.00 0.00 2.41
2583 4498 7.008021 AGTAAATAAAAACGGAGGGAGTACA 57.992 36.000 0.00 0.00 0.00 2.90
2584 4499 7.277319 CAGAGTAAATAAAAACGGAGGGAGTAC 59.723 40.741 0.00 0.00 0.00 2.73
2585 4500 7.325694 CAGAGTAAATAAAAACGGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
2586 4501 6.171213 CAGAGTAAATAAAAACGGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
2587 4502 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
2588 4503 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
2589 4504 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
2590 4505 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
2606 4521 8.659925 ACTTCAATCAACTCTAATATGCAGAG 57.340 34.615 11.37 11.37 44.28 3.35
2607 4522 8.260114 TGACTTCAATCAACTCTAATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
2608 4523 8.429493 TGACTTCAATCAACTCTAATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
2609 4524 8.791327 TTGACTTCAATCAACTCTAATATGCA 57.209 30.769 0.00 0.00 33.62 3.96
2631 4546 6.540914 ACTTGGTCAAACTTTACGAAGATTGA 59.459 34.615 7.49 7.49 46.18 2.57
2632 4547 6.725246 ACTTGGTCAAACTTTACGAAGATTG 58.275 36.000 5.78 0.00 43.26 2.67
2633 4548 6.937436 ACTTGGTCAAACTTTACGAAGATT 57.063 33.333 5.78 0.00 35.66 2.40
2634 4549 6.540914 TGAACTTGGTCAAACTTTACGAAGAT 59.459 34.615 5.78 0.00 35.66 2.40
2635 4550 5.875910 TGAACTTGGTCAAACTTTACGAAGA 59.124 36.000 5.78 0.00 35.66 2.87
2636 4551 6.114221 TGAACTTGGTCAAACTTTACGAAG 57.886 37.500 0.00 0.00 37.43 3.79
2637 4552 6.687081 ATGAACTTGGTCAAACTTTACGAA 57.313 33.333 0.00 0.00 0.00 3.85
2638 4553 7.211573 TCTATGAACTTGGTCAAACTTTACGA 58.788 34.615 0.00 0.00 0.00 3.43
2639 4554 7.416154 TCTATGAACTTGGTCAAACTTTACG 57.584 36.000 0.00 0.00 0.00 3.18
2774 4689 6.020360 GTCAAGCTTTACAAACTTTGAGCAAG 60.020 38.462 8.55 7.77 38.64 4.01
2775 4690 5.804979 GTCAAGCTTTACAAACTTTGAGCAA 59.195 36.000 8.55 0.00 32.30 3.91
2776 4691 5.125417 AGTCAAGCTTTACAAACTTTGAGCA 59.875 36.000 13.07 0.00 32.30 4.26
2777 4692 5.582550 AGTCAAGCTTTACAAACTTTGAGC 58.417 37.500 13.07 6.99 0.00 4.26
2781 4696 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
2782 4697 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
2783 4698 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
2784 4699 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
2785 4700 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
2786 4701 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
2787 4702 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
2800 4715 7.759489 AGTTCACATATTAGCTTTGGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
2801 4716 8.856153 TTAGTTCACATATTAGCTTTGGTCAA 57.144 30.769 0.00 0.00 0.00 3.18
2802 4717 8.856153 TTTAGTTCACATATTAGCTTTGGTCA 57.144 30.769 0.00 0.00 0.00 4.02
2814 4729 8.899771 CCCTCCGTTTTTATTTAGTTCACATAT 58.100 33.333 0.00 0.00 0.00 1.78
2815 4730 8.102047 TCCCTCCGTTTTTATTTAGTTCACATA 58.898 33.333 0.00 0.00 0.00 2.29
2816 4731 6.943718 TCCCTCCGTTTTTATTTAGTTCACAT 59.056 34.615 0.00 0.00 0.00 3.21
2817 4732 6.297582 TCCCTCCGTTTTTATTTAGTTCACA 58.702 36.000 0.00 0.00 0.00 3.58
2818 4733 6.429078 ACTCCCTCCGTTTTTATTTAGTTCAC 59.571 38.462 0.00 0.00 0.00 3.18
2819 4734 6.536447 ACTCCCTCCGTTTTTATTTAGTTCA 58.464 36.000 0.00 0.00 0.00 3.18
2820 4735 8.728337 ATACTCCCTCCGTTTTTATTTAGTTC 57.272 34.615 0.00 0.00 0.00 3.01
2821 4736 9.524496 AAATACTCCCTCCGTTTTTATTTAGTT 57.476 29.630 0.00 0.00 0.00 2.24
2822 4737 9.524496 AAAATACTCCCTCCGTTTTTATTTAGT 57.476 29.630 0.00 0.00 0.00 2.24
2823 4738 9.783256 CAAAATACTCCCTCCGTTTTTATTTAG 57.217 33.333 0.00 0.00 0.00 1.85
2824 4739 9.517868 TCAAAATACTCCCTCCGTTTTTATTTA 57.482 29.630 0.00 0.00 0.00 1.40
2825 4740 8.411991 TCAAAATACTCCCTCCGTTTTTATTT 57.588 30.769 0.00 0.00 0.00 1.40
2826 4741 8.589701 ATCAAAATACTCCCTCCGTTTTTATT 57.410 30.769 0.00 0.00 0.00 1.40
2827 4742 8.589701 AATCAAAATACTCCCTCCGTTTTTAT 57.410 30.769 0.00 0.00 0.00 1.40
2828 4743 7.121611 GGAATCAAAATACTCCCTCCGTTTTTA 59.878 37.037 0.00 0.00 0.00 1.52
2829 4744 6.071560 GGAATCAAAATACTCCCTCCGTTTTT 60.072 38.462 0.00 0.00 0.00 1.94
2830 4745 5.417894 GGAATCAAAATACTCCCTCCGTTTT 59.582 40.000 0.00 0.00 0.00 2.43
2831 4746 4.948004 GGAATCAAAATACTCCCTCCGTTT 59.052 41.667 0.00 0.00 0.00 3.60
2832 4747 4.227527 AGGAATCAAAATACTCCCTCCGTT 59.772 41.667 0.00 0.00 0.00 4.44
2833 4748 3.780850 AGGAATCAAAATACTCCCTCCGT 59.219 43.478 0.00 0.00 0.00 4.69
2834 4749 4.423625 AGGAATCAAAATACTCCCTCCG 57.576 45.455 0.00 0.00 0.00 4.63
2835 4750 4.816925 CGAAGGAATCAAAATACTCCCTCC 59.183 45.833 0.00 0.00 0.00 4.30
2836 4751 5.993106 CGAAGGAATCAAAATACTCCCTC 57.007 43.478 0.00 0.00 0.00 4.30
2854 4769 2.224079 CACATGTCAAACTGGACCGAAG 59.776 50.000 0.00 0.00 36.97 3.79
2855 4770 2.217750 CACATGTCAAACTGGACCGAA 58.782 47.619 0.00 0.00 36.97 4.30
2856 4771 1.542328 CCACATGTCAAACTGGACCGA 60.542 52.381 0.00 0.00 36.97 4.69
2857 4772 0.874390 CCACATGTCAAACTGGACCG 59.126 55.000 0.00 0.00 36.97 4.79
2858 4773 0.598065 GCCACATGTCAAACTGGACC 59.402 55.000 0.00 0.00 36.97 4.46
2859 4774 0.598065 GGCCACATGTCAAACTGGAC 59.402 55.000 0.00 0.00 38.29 4.02
2860 4775 0.539438 GGGCCACATGTCAAACTGGA 60.539 55.000 4.39 0.00 0.00 3.86
2861 4776 1.535204 GGGGCCACATGTCAAACTGG 61.535 60.000 4.39 0.00 0.00 4.00
2862 4777 0.827089 TGGGGCCACATGTCAAACTG 60.827 55.000 1.54 0.00 0.00 3.16
2863 4778 0.827507 GTGGGGCCACATGTCAAACT 60.828 55.000 13.06 0.00 45.53 2.66
2864 4779 1.665442 GTGGGGCCACATGTCAAAC 59.335 57.895 13.06 0.00 45.53 2.93
2865 4780 4.189539 GTGGGGCCACATGTCAAA 57.810 55.556 13.06 0.00 45.53 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.