Multiple sequence alignment - TraesCS1B01G321100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G321100 chr1B 100.000 3899 0 0 1 3899 545203819 545207717 0.000000e+00 7201.0
1 TraesCS1B01G321100 chr1A 91.914 1113 61 18 2594 3686 500827341 500828444 0.000000e+00 1530.0
2 TraesCS1B01G321100 chr1A 88.042 761 60 13 1484 2214 500826589 500827348 0.000000e+00 872.0
3 TraesCS1B01G321100 chr1A 85.526 760 94 8 640 1384 500825723 500826481 0.000000e+00 780.0
4 TraesCS1B01G321100 chr1A 94.836 213 8 2 3688 3899 500828476 500828686 2.900000e-86 329.0
5 TraesCS1B01G321100 chr1A 83.142 261 25 4 305 546 500825184 500825444 1.820000e-53 220.0
6 TraesCS1B01G321100 chr1A 85.714 77 11 0 1 77 500824918 500824994 8.980000e-12 82.4
7 TraesCS1B01G321100 chr1D 90.868 1106 73 17 2594 3675 405365214 405366315 0.000000e+00 1458.0
8 TraesCS1B01G321100 chr1D 91.940 732 48 8 1484 2214 405364500 405365221 0.000000e+00 1014.0
9 TraesCS1B01G321100 chr1D 84.553 615 61 15 785 1383 405363755 405364351 2.610000e-161 579.0
10 TraesCS1B01G321100 chr1D 83.516 455 52 8 305 739 405363287 405363738 1.690000e-108 403.0
11 TraesCS1B01G321100 chr1D 91.121 214 17 2 3688 3899 405366360 405366573 4.930000e-74 289.0
12 TraesCS1B01G321100 chr1D 90.476 42 2 2 1421 1461 260286355 260286315 2.000000e-03 54.7
13 TraesCS1B01G321100 chr2B 86.359 953 86 28 2954 3899 635345644 635344729 0.000000e+00 1000.0
14 TraesCS1B01G321100 chr2B 94.000 400 21 3 2207 2604 636003522 636003124 1.550000e-168 603.0
15 TraesCS1B01G321100 chr2D 86.622 740 71 25 2954 3686 534365066 534364348 0.000000e+00 793.0
16 TraesCS1B01G321100 chr2D 91.080 213 17 2 3688 3899 534364316 534364105 1.770000e-73 287.0
17 TraesCS1B01G321100 chr7B 98.695 383 5 0 2215 2597 479815163 479814781 0.000000e+00 680.0
18 TraesCS1B01G321100 chr7B 95.251 379 18 0 2215 2593 729408565 729408943 5.570000e-168 601.0
19 TraesCS1B01G321100 chr6A 95.276 381 18 0 2215 2595 9572344 9571964 4.310000e-169 604.0
20 TraesCS1B01G321100 chr6B 95.263 380 18 0 2215 2594 34860275 34859896 1.550000e-168 603.0
21 TraesCS1B01G321100 chr3B 95.276 381 17 1 2214 2593 739840264 739840644 1.550000e-168 603.0
22 TraesCS1B01G321100 chr2A 95.263 380 18 0 2214 2593 22041205 22040826 1.550000e-168 603.0
23 TraesCS1B01G321100 chr2A 94.595 37 1 1 1412 1447 434567746 434567782 5.440000e-04 56.5
24 TraesCS1B01G321100 chr4A 95.263 380 17 1 2215 2593 728814464 728814085 5.570000e-168 601.0
25 TraesCS1B01G321100 chr4A 93.909 394 22 2 2215 2608 598811147 598810756 9.330000e-166 593.0
26 TraesCS1B01G321100 chr4A 100.000 30 0 0 1421 1450 738814167 738814138 5.440000e-04 56.5
27 TraesCS1B01G321100 chr6D 94.737 38 1 1 1412 1448 134695762 134695799 1.510000e-04 58.4
28 TraesCS1B01G321100 chr6D 94.595 37 1 1 1417 1453 262513921 262513886 5.440000e-04 56.5
29 TraesCS1B01G321100 chr6D 92.308 39 2 1 1412 1449 129438527 129438489 2.000000e-03 54.7
30 TraesCS1B01G321100 chr7D 90.698 43 2 2 1408 1448 529689652 529689694 5.440000e-04 56.5
31 TraesCS1B01G321100 chr7D 97.059 34 0 1 1412 1444 590218609 590218642 5.440000e-04 56.5
32 TraesCS1B01G321100 chr5D 91.892 37 3 0 1412 1448 60072230 60072266 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G321100 chr1B 545203819 545207717 3898 False 7201.000000 7201 100.000000 1 3899 1 chr1B.!!$F1 3898
1 TraesCS1B01G321100 chr1A 500824918 500828686 3768 False 635.566667 1530 88.195667 1 3899 6 chr1A.!!$F1 3898
2 TraesCS1B01G321100 chr1D 405363287 405366573 3286 False 748.600000 1458 88.399600 305 3899 5 chr1D.!!$F1 3594
3 TraesCS1B01G321100 chr2B 635344729 635345644 915 True 1000.000000 1000 86.359000 2954 3899 1 chr2B.!!$R1 945
4 TraesCS1B01G321100 chr2D 534364105 534365066 961 True 540.000000 793 88.851000 2954 3899 2 chr2D.!!$R1 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 363 0.247185 AAAATTCACCATGCAGGGCG 59.753 50.0 19.26 8.54 43.89 6.13 F
2142 2531 0.179032 CACAGGTACAAGGTGGCACA 60.179 55.0 20.82 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2635 0.104304 CATTTACCCGTCTCCCTCGG 59.896 60.0 0.0 0.0 46.49 4.63 R
3256 3656 0.537653 GGTTAGTCCTCTCCACTGCC 59.462 60.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.334435 CATGTTGGCATACGTGATTAGAG 57.666 43.478 13.36 0.00 37.24 2.43
52 53 1.331214 CAATGCAACCCAACTCCACT 58.669 50.000 0.00 0.00 0.00 4.00
53 54 1.270550 CAATGCAACCCAACTCCACTC 59.729 52.381 0.00 0.00 0.00 3.51
54 55 0.606401 ATGCAACCCAACTCCACTCG 60.606 55.000 0.00 0.00 0.00 4.18
55 56 2.617274 GCAACCCAACTCCACTCGC 61.617 63.158 0.00 0.00 0.00 5.03
66 67 0.249120 TCCACTCGCTACCACCATTG 59.751 55.000 0.00 0.00 0.00 2.82
69 70 1.464608 CACTCGCTACCACCATTGTTG 59.535 52.381 0.00 0.00 0.00 3.33
77 78 3.557228 ACCACCATTGTTGCAATGTTT 57.443 38.095 17.24 4.81 0.00 2.83
78 79 3.465871 ACCACCATTGTTGCAATGTTTC 58.534 40.909 17.24 0.00 0.00 2.78
79 80 3.118482 ACCACCATTGTTGCAATGTTTCA 60.118 39.130 17.24 0.00 0.00 2.69
80 81 3.248125 CCACCATTGTTGCAATGTTTCAC 59.752 43.478 17.24 0.00 0.00 3.18
81 82 4.121317 CACCATTGTTGCAATGTTTCACT 58.879 39.130 17.24 0.00 0.00 3.41
82 83 4.025563 CACCATTGTTGCAATGTTTCACTG 60.026 41.667 17.24 0.00 0.00 3.66
83 84 3.059461 CCATTGTTGCAATGTTTCACTGC 60.059 43.478 17.24 0.00 36.60 4.40
84 85 1.837648 TGTTGCAATGTTTCACTGCG 58.162 45.000 0.59 0.00 38.97 5.18
86 87 2.046313 GTTGCAATGTTTCACTGCGAG 58.954 47.619 0.59 0.00 38.97 5.03
88 89 1.675483 TGCAATGTTTCACTGCGAGTT 59.325 42.857 0.00 0.00 38.97 3.01
89 90 2.875317 TGCAATGTTTCACTGCGAGTTA 59.125 40.909 0.00 0.00 38.97 2.24
90 91 3.058983 TGCAATGTTTCACTGCGAGTTAG 60.059 43.478 0.00 0.00 38.97 2.34
92 93 1.508632 TGTTTCACTGCGAGTTAGCC 58.491 50.000 0.00 0.00 36.02 3.93
93 94 1.202592 TGTTTCACTGCGAGTTAGCCA 60.203 47.619 0.00 0.00 36.02 4.75
96 97 3.603158 TTCACTGCGAGTTAGCCAATA 57.397 42.857 0.00 0.00 36.02 1.90
108 189 6.807230 CGAGTTAGCCAATATTTAGACGCTAT 59.193 38.462 0.00 0.00 0.00 2.97
138 220 9.399797 TCAGAACAATATATCAAAGAGTTGCAT 57.600 29.630 0.00 0.00 34.50 3.96
156 238 3.822167 TGCATTGAGTGATTGATGTGTGT 59.178 39.130 0.00 0.00 0.00 3.72
181 263 2.864968 CGAGAGGTCAGAGTTTAACGG 58.135 52.381 0.00 0.00 0.00 4.44
185 267 5.563475 CGAGAGGTCAGAGTTTAACGGTAAA 60.563 44.000 0.36 0.36 0.00 2.01
186 268 5.780984 AGAGGTCAGAGTTTAACGGTAAAG 58.219 41.667 5.75 0.00 29.74 1.85
187 269 5.537674 AGAGGTCAGAGTTTAACGGTAAAGA 59.462 40.000 5.75 0.00 29.74 2.52
188 270 5.780984 AGGTCAGAGTTTAACGGTAAAGAG 58.219 41.667 5.75 0.00 29.74 2.85
189 271 4.388165 GGTCAGAGTTTAACGGTAAAGAGC 59.612 45.833 5.75 6.17 29.74 4.09
190 272 4.986659 GTCAGAGTTTAACGGTAAAGAGCA 59.013 41.667 5.75 0.00 29.74 4.26
191 273 5.464389 GTCAGAGTTTAACGGTAAAGAGCAA 59.536 40.000 5.75 0.00 29.74 3.91
192 274 6.147328 GTCAGAGTTTAACGGTAAAGAGCAAT 59.853 38.462 5.75 0.00 29.74 3.56
193 275 6.147164 TCAGAGTTTAACGGTAAAGAGCAATG 59.853 38.462 5.75 0.68 29.74 2.82
194 276 5.995897 AGAGTTTAACGGTAAAGAGCAATGT 59.004 36.000 5.75 0.00 29.74 2.71
195 277 5.997385 AGTTTAACGGTAAAGAGCAATGTG 58.003 37.500 5.75 0.00 29.74 3.21
196 278 5.761234 AGTTTAACGGTAAAGAGCAATGTGA 59.239 36.000 5.75 0.00 29.74 3.58
197 279 6.261381 AGTTTAACGGTAAAGAGCAATGTGAA 59.739 34.615 5.75 0.00 29.74 3.18
198 280 6.811253 TTAACGGTAAAGAGCAATGTGAAT 57.189 33.333 0.00 0.00 0.00 2.57
199 281 5.705609 AACGGTAAAGAGCAATGTGAATT 57.294 34.783 0.00 0.00 0.00 2.17
200 282 6.811253 AACGGTAAAGAGCAATGTGAATTA 57.189 33.333 0.00 0.00 0.00 1.40
201 283 6.178239 ACGGTAAAGAGCAATGTGAATTAC 57.822 37.500 0.00 0.00 0.00 1.89
202 284 5.938125 ACGGTAAAGAGCAATGTGAATTACT 59.062 36.000 0.00 0.00 0.00 2.24
203 285 6.092259 ACGGTAAAGAGCAATGTGAATTACTC 59.908 38.462 0.00 0.00 0.00 2.59
204 286 6.313905 CGGTAAAGAGCAATGTGAATTACTCT 59.686 38.462 0.00 0.00 36.19 3.24
205 287 7.148407 CGGTAAAGAGCAATGTGAATTACTCTT 60.148 37.037 7.74 7.74 42.80 2.85
207 289 9.899226 GTAAAGAGCAATGTGAATTACTCTTTT 57.101 29.630 22.39 12.50 45.11 2.27
273 355 9.947433 ACAATCATTGATTACAAAATTCACCAT 57.053 25.926 11.44 0.00 39.54 3.55
275 357 7.830940 TCATTGATTACAAAATTCACCATGC 57.169 32.000 0.00 0.00 39.54 4.06
276 358 7.384477 TCATTGATTACAAAATTCACCATGCA 58.616 30.769 0.00 0.00 39.54 3.96
277 359 7.546316 TCATTGATTACAAAATTCACCATGCAG 59.454 33.333 0.00 0.00 39.54 4.41
278 360 5.722263 TGATTACAAAATTCACCATGCAGG 58.278 37.500 0.00 0.00 45.67 4.85
279 361 4.533919 TTACAAAATTCACCATGCAGGG 57.466 40.909 17.55 17.55 43.89 4.45
280 362 1.002315 ACAAAATTCACCATGCAGGGC 59.998 47.619 19.26 0.00 43.89 5.19
281 363 0.247185 AAAATTCACCATGCAGGGCG 59.753 50.000 19.26 8.54 43.89 6.13
282 364 2.229690 AAATTCACCATGCAGGGCGC 62.230 55.000 19.26 0.00 43.89 6.53
291 373 3.590824 GCAGGGCGCAACACTATT 58.409 55.556 10.83 0.00 41.79 1.73
292 374 2.775351 GCAGGGCGCAACACTATTA 58.225 52.632 10.83 0.00 41.79 0.98
293 375 1.091537 GCAGGGCGCAACACTATTAA 58.908 50.000 10.83 0.00 41.79 1.40
294 376 1.064060 GCAGGGCGCAACACTATTAAG 59.936 52.381 10.83 0.00 41.79 1.85
295 377 2.627945 CAGGGCGCAACACTATTAAGA 58.372 47.619 10.83 0.00 0.00 2.10
296 378 3.206150 CAGGGCGCAACACTATTAAGAT 58.794 45.455 10.83 0.00 0.00 2.40
297 379 4.377021 CAGGGCGCAACACTATTAAGATA 58.623 43.478 10.83 0.00 0.00 1.98
298 380 4.211374 CAGGGCGCAACACTATTAAGATAC 59.789 45.833 10.83 0.00 0.00 2.24
299 381 3.497262 GGGCGCAACACTATTAAGATACC 59.503 47.826 10.83 0.00 0.00 2.73
300 382 4.124238 GGCGCAACACTATTAAGATACCA 58.876 43.478 10.83 0.00 0.00 3.25
301 383 4.025145 GGCGCAACACTATTAAGATACCAC 60.025 45.833 10.83 0.00 0.00 4.16
302 384 4.317839 GCGCAACACTATTAAGATACCACG 60.318 45.833 0.30 0.00 0.00 4.94
303 385 4.317839 CGCAACACTATTAAGATACCACGC 60.318 45.833 0.00 0.00 0.00 5.34
338 420 7.225538 GTGAATTACTCTTGATATCACAGGGTG 59.774 40.741 21.20 10.46 36.58 4.61
398 485 8.679344 ACTAGTATTTCCCAATTTCCCAATTT 57.321 30.769 0.00 0.00 29.41 1.82
424 511 2.703798 CCCTGCTTGCAATCCCACG 61.704 63.158 0.00 0.00 0.00 4.94
427 514 1.228094 TGCTTGCAATCCCACGTCA 60.228 52.632 0.00 0.00 0.00 4.35
479 580 3.819368 TCATTGCTTCTGTTGGTTCTCA 58.181 40.909 0.00 0.00 0.00 3.27
482 583 2.783135 TGCTTCTGTTGGTTCTCATCC 58.217 47.619 0.00 0.00 0.00 3.51
491 592 1.290134 GGTTCTCATCCTCACCCCTT 58.710 55.000 0.00 0.00 0.00 3.95
509 610 3.646534 CCTTGCTAGGGAAAATGGGATT 58.353 45.455 6.27 0.00 37.94 3.01
553 654 3.847184 AGGAAGAAGGAAACTAAGGGAGG 59.153 47.826 0.00 0.00 42.68 4.30
557 658 0.804255 AGGAAACTAAGGGAGGGGGA 59.196 55.000 0.00 0.00 40.61 4.81
558 659 1.214217 GGAAACTAAGGGAGGGGGAG 58.786 60.000 0.00 0.00 0.00 4.30
563 664 1.874917 TAAGGGAGGGGGAGGGGAA 60.875 63.158 0.00 0.00 0.00 3.97
579 680 3.396611 AGGGGAAGCTAAGTACAAAACCA 59.603 43.478 0.00 0.00 0.00 3.67
581 682 4.506095 GGGGAAGCTAAGTACAAAACCAGA 60.506 45.833 0.00 0.00 0.00 3.86
585 686 2.747989 GCTAAGTACAAAACCAGAGGCC 59.252 50.000 0.00 0.00 0.00 5.19
586 687 1.892209 AAGTACAAAACCAGAGGCCG 58.108 50.000 0.00 0.00 0.00 6.13
590 691 2.358737 AAAACCAGAGGCCGCTCG 60.359 61.111 5.80 1.72 0.00 5.03
621 722 0.616371 TTTACCACCATGGACTCCCG 59.384 55.000 21.47 0.85 40.96 5.14
623 724 3.716195 CCACCATGGACTCCCGCA 61.716 66.667 21.47 0.00 40.96 5.69
626 727 1.690633 ACCATGGACTCCCGCATCT 60.691 57.895 21.47 0.00 34.29 2.90
638 739 2.214389 CGCATCTCATGAGCGTCAG 58.786 57.895 18.36 6.59 45.82 3.51
642 928 2.614779 CATCTCATGAGCGTCAGTGTT 58.385 47.619 18.36 0.00 0.00 3.32
655 941 1.664965 AGTGTTCTTCCGCGAGTGC 60.665 57.895 8.23 0.00 37.91 4.40
659 945 3.158537 TTCTTCCGCGAGTGCCACA 62.159 57.895 8.23 0.00 38.08 4.17
675 961 5.245977 AGTGCCACACCAGCTTTATTTTATT 59.754 36.000 0.00 0.00 34.49 1.40
768 1054 4.657814 ACAAAGATACAAGTGGGTCCAT 57.342 40.909 0.00 0.00 0.00 3.41
771 1057 5.195940 CAAAGATACAAGTGGGTCCATCAT 58.804 41.667 0.00 0.00 0.00 2.45
772 1058 6.069673 ACAAAGATACAAGTGGGTCCATCATA 60.070 38.462 0.00 0.00 0.00 2.15
774 1060 6.575244 AGATACAAGTGGGTCCATCATAAA 57.425 37.500 0.00 0.00 0.00 1.40
775 1061 6.969043 AGATACAAGTGGGTCCATCATAAAA 58.031 36.000 0.00 0.00 0.00 1.52
783 1069 3.954258 GGGTCCATCATAAAAGACAAGGG 59.046 47.826 0.00 0.00 0.00 3.95
791 1077 6.524101 TCATAAAAGACAAGGGGTATTTGC 57.476 37.500 0.00 0.00 39.87 3.68
819 1105 7.851508 TCTAGCATTATTTTCATCGTAACTGC 58.148 34.615 0.00 0.00 0.00 4.40
823 1109 6.020678 GCATTATTTTCATCGTAACTGCCAAC 60.021 38.462 0.00 0.00 0.00 3.77
848 1134 6.798315 GATTCCATCCATGTAGAGTTGATG 57.202 41.667 0.00 0.00 34.10 3.07
856 1142 1.337728 TGTAGAGTTGATGGTGGCGTG 60.338 52.381 0.00 0.00 0.00 5.34
868 1154 2.749839 GGCGTGGCAAGCATACCA 60.750 61.111 25.93 0.00 36.08 3.25
925 1221 2.501865 CGCTTTTTCCGGCTTCGC 60.502 61.111 0.00 0.00 0.00 4.70
999 1295 4.456222 TGCCGAATAGAAAATGGAAAACGA 59.544 37.500 0.00 0.00 0.00 3.85
1084 1382 3.272031 GCAGGAGCAGAGCAAACC 58.728 61.111 0.00 0.00 41.58 3.27
1091 1389 0.674895 AGCAGAGCAAACCGATGGTC 60.675 55.000 6.84 6.84 45.77 4.02
1103 1401 2.707791 ACCGATGGTCATCCTCATTCAT 59.292 45.455 5.48 0.00 34.40 2.57
1115 1413 9.903682 GTCATCCTCATTCATGTAAATTTATGG 57.096 33.333 0.31 0.00 0.00 2.74
1130 1428 4.364415 TTTATGGGTCGCTATTTTGCAC 57.636 40.909 0.00 0.00 0.00 4.57
1155 1453 6.204108 CACTAGTTGATTGTTTTTAGTCGGGT 59.796 38.462 0.00 0.00 0.00 5.28
1161 1459 4.657436 TTGTTTTTAGTCGGGTTGCAAT 57.343 36.364 0.59 0.00 0.00 3.56
1197 1495 4.783764 AATCCTGTTTTTGATTCGTCCC 57.216 40.909 0.00 0.00 0.00 4.46
1198 1496 2.147958 TCCTGTTTTTGATTCGTCCCG 58.852 47.619 0.00 0.00 0.00 5.14
1218 1516 3.559242 CCGTTGATTGCCATTTTTGTTGT 59.441 39.130 0.00 0.00 0.00 3.32
1228 1526 3.552684 CCATTTTTGTTGTCGCATCACCT 60.553 43.478 0.00 0.00 0.00 4.00
1230 1528 3.889196 TTTTGTTGTCGCATCACCTAC 57.111 42.857 0.00 0.00 0.00 3.18
1235 1533 1.166989 TGTCGCATCACCTACGTACA 58.833 50.000 0.00 0.00 0.00 2.90
1238 1536 0.852777 CGCATCACCTACGTACATGC 59.147 55.000 11.45 11.45 35.49 4.06
1239 1537 1.801025 CGCATCACCTACGTACATGCA 60.801 52.381 17.59 0.00 37.33 3.96
1251 1549 3.067601 ACGTACATGCATGTCGATAAGGA 59.932 43.478 36.02 19.66 41.97 3.36
1299 1597 1.336980 GGCTATACCTTGCGTCCTAGC 60.337 57.143 0.00 0.00 36.10 3.42
1308 1606 2.509052 TGCGTCCTAGCACATATGTC 57.491 50.000 5.07 1.35 42.92 3.06
1309 1607 1.754226 TGCGTCCTAGCACATATGTCA 59.246 47.619 5.07 0.00 42.92 3.58
1340 1638 2.880770 ACCATGCGGTGTTTATGGG 58.119 52.632 0.00 0.00 46.79 4.00
1342 1640 1.318886 CCATGCGGTGTTTATGGGCA 61.319 55.000 0.00 0.00 38.12 5.36
1343 1641 0.529833 CATGCGGTGTTTATGGGCAA 59.470 50.000 0.00 0.00 37.15 4.52
1349 1653 3.678529 GCGGTGTTTATGGGCAAATTGAT 60.679 43.478 0.00 0.00 0.00 2.57
1350 1654 3.864583 CGGTGTTTATGGGCAAATTGATG 59.135 43.478 0.00 0.00 0.00 3.07
1384 1688 6.709281 TCCGGTTTATGTTGTGTCCTATTTA 58.291 36.000 0.00 0.00 0.00 1.40
1385 1689 7.340256 TCCGGTTTATGTTGTGTCCTATTTAT 58.660 34.615 0.00 0.00 0.00 1.40
1386 1690 8.484575 TCCGGTTTATGTTGTGTCCTATTTATA 58.515 33.333 0.00 0.00 0.00 0.98
1387 1691 9.280174 CCGGTTTATGTTGTGTCCTATTTATAT 57.720 33.333 0.00 0.00 0.00 0.86
1394 1698 8.978874 TGTTGTGTCCTATTTATATGAATGCT 57.021 30.769 3.08 0.00 0.00 3.79
1398 1702 9.929180 TGTGTCCTATTTATATGAATGCTACTC 57.071 33.333 3.08 1.26 0.00 2.59
1401 1705 9.092876 GTCCTATTTATATGAATGCTACTCTGC 57.907 37.037 3.08 0.00 0.00 4.26
1403 1707 9.664332 CCTATTTATATGAATGCTACTCTGCTT 57.336 33.333 3.08 0.00 0.00 3.91
1432 1780 8.621532 TGACAAAAGCTCATATATTATGGGAC 57.378 34.615 0.00 0.00 0.00 4.46
1433 1781 7.387673 TGACAAAAGCTCATATATTATGGGACG 59.612 37.037 0.00 0.00 0.00 4.79
1443 1802 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
1444 1803 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
1446 1805 0.901580 TGGGACGGAGGGAGTACAAC 60.902 60.000 0.00 0.00 0.00 3.32
1447 1806 0.901580 GGGACGGAGGGAGTACAACA 60.902 60.000 0.00 0.00 0.00 3.33
1448 1807 0.245813 GGACGGAGGGAGTACAACAC 59.754 60.000 0.00 0.00 0.00 3.32
1449 1808 1.254954 GACGGAGGGAGTACAACACT 58.745 55.000 0.00 0.00 41.47 3.55
1450 1809 2.440409 GACGGAGGGAGTACAACACTA 58.560 52.381 0.00 0.00 37.72 2.74
1451 1810 3.022406 GACGGAGGGAGTACAACACTAT 58.978 50.000 0.00 0.00 37.72 2.12
1453 1812 3.194968 ACGGAGGGAGTACAACACTATTG 59.805 47.826 0.00 0.00 37.72 1.90
1454 1813 3.446161 CGGAGGGAGTACAACACTATTGA 59.554 47.826 0.00 0.00 37.72 2.57
1457 1816 6.183360 CGGAGGGAGTACAACACTATTGATTA 60.183 42.308 0.00 0.00 37.72 1.75
1459 1818 8.211629 GGAGGGAGTACAACACTATTGATTATT 58.788 37.037 0.00 0.00 37.72 1.40
1462 1821 9.391006 GGGAGTACAACACTATTGATTATTTGA 57.609 33.333 0.00 0.00 37.72 2.69
1486 1845 8.325046 TGAATTCAAAAAGGAAGAAAAGGGAAA 58.675 29.630 5.45 0.00 0.00 3.13
1496 1855 6.943146 AGGAAGAAAAGGGAAAACTACTGATC 59.057 38.462 0.00 0.00 0.00 2.92
1522 1882 0.604243 TGGTTTGTTCAGCCGCGTAT 60.604 50.000 4.92 0.00 0.00 3.06
1580 1940 1.480954 TCCCACCTCTTCATCGTAAGC 59.519 52.381 0.00 0.00 37.18 3.09
1590 1950 6.259608 CCTCTTCATCGTAAGCAATCTCATTT 59.740 38.462 0.00 0.00 37.18 2.32
1620 1980 9.596308 ACCTCCACCTTAACAATTAATTTAAGT 57.404 29.630 14.36 2.56 34.69 2.24
1649 2034 7.606858 ATTTGTATCATGGAGCGATCATTAG 57.393 36.000 1.84 0.00 0.00 1.73
2014 2403 1.894756 CGACCAGCCGGAAAAACCA 60.895 57.895 5.05 0.00 38.90 3.67
2023 2412 1.011333 CGGAAAAACCACACGTCTGT 58.989 50.000 0.00 0.00 38.90 3.41
2040 2429 1.227943 GTGCCACCACAGAGCAAGA 60.228 57.895 0.00 0.00 41.67 3.02
2133 2522 2.167398 GAGGAGCCGCACAGGTACAA 62.167 60.000 0.00 0.00 43.70 2.41
2140 2529 1.228124 GCACAGGTACAAGGTGGCA 60.228 57.895 11.26 0.00 33.25 4.92
2142 2531 0.179032 CACAGGTACAAGGTGGCACA 60.179 55.000 20.82 0.00 0.00 4.57
2224 2613 0.738389 ACGTGCTGTCAAGGTTTTGG 59.262 50.000 0.00 0.00 34.97 3.28
2225 2614 0.738389 CGTGCTGTCAAGGTTTTGGT 59.262 50.000 0.00 0.00 34.97 3.67
2226 2615 1.134175 CGTGCTGTCAAGGTTTTGGTT 59.866 47.619 0.00 0.00 34.97 3.67
2227 2616 2.356382 CGTGCTGTCAAGGTTTTGGTTA 59.644 45.455 0.00 0.00 34.97 2.85
2228 2617 3.702330 GTGCTGTCAAGGTTTTGGTTAC 58.298 45.455 0.00 0.00 34.97 2.50
2229 2618 2.691011 TGCTGTCAAGGTTTTGGTTACC 59.309 45.455 0.00 0.00 34.97 2.85
2230 2619 2.287368 GCTGTCAAGGTTTTGGTTACCG 60.287 50.000 0.00 0.00 40.69 4.02
2231 2620 3.207778 CTGTCAAGGTTTTGGTTACCGA 58.792 45.455 0.00 0.00 40.69 4.69
2232 2621 3.618351 TGTCAAGGTTTTGGTTACCGAA 58.382 40.909 0.00 0.00 40.69 4.30
2233 2622 4.208746 TGTCAAGGTTTTGGTTACCGAAT 58.791 39.130 4.72 0.00 40.69 3.34
2234 2623 4.036971 TGTCAAGGTTTTGGTTACCGAATG 59.963 41.667 4.72 0.85 40.69 2.67
2235 2624 4.276431 GTCAAGGTTTTGGTTACCGAATGA 59.724 41.667 4.72 3.29 40.69 2.57
2236 2625 4.517453 TCAAGGTTTTGGTTACCGAATGAG 59.483 41.667 4.72 0.00 40.69 2.90
2237 2626 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
2238 2627 2.094906 GGTTTTGGTTACCGAATGAGGC 60.095 50.000 4.72 0.00 33.69 4.70
2239 2628 2.554893 GTTTTGGTTACCGAATGAGGCA 59.445 45.455 4.72 0.00 33.69 4.75
2240 2629 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
2241 2630 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
2242 2631 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
2243 2632 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
2244 2633 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
2245 2634 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
2246 2635 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
2247 2636 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
2248 2637 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
2249 2638 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
2250 2639 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
2251 2640 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
2252 2641 2.122783 TGAGGCAATTTTACCGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
2253 2642 1.631388 TGAGGCAATTTTACCGAGGGA 59.369 47.619 0.00 0.00 0.00 4.20
2254 2643 2.289565 GAGGCAATTTTACCGAGGGAG 58.710 52.381 0.00 0.00 0.00 4.30
2255 2644 1.913419 AGGCAATTTTACCGAGGGAGA 59.087 47.619 0.00 0.00 0.00 3.71
2256 2645 2.014857 GGCAATTTTACCGAGGGAGAC 58.985 52.381 0.00 0.00 0.00 3.36
2257 2646 1.664151 GCAATTTTACCGAGGGAGACG 59.336 52.381 0.00 0.00 0.00 4.18
2263 2652 4.023137 CCGAGGGAGACGGGTAAA 57.977 61.111 0.00 0.00 45.65 2.01
2264 2653 2.512973 CCGAGGGAGACGGGTAAAT 58.487 57.895 0.00 0.00 45.65 1.40
2265 2654 0.104304 CCGAGGGAGACGGGTAAATG 59.896 60.000 0.00 0.00 45.65 2.32
2266 2655 0.822164 CGAGGGAGACGGGTAAATGT 59.178 55.000 0.00 0.00 0.00 2.71
2267 2656 1.470979 CGAGGGAGACGGGTAAATGTG 60.471 57.143 0.00 0.00 0.00 3.21
2268 2657 0.909623 AGGGAGACGGGTAAATGTGG 59.090 55.000 0.00 0.00 0.00 4.17
2269 2658 0.616891 GGGAGACGGGTAAATGTGGT 59.383 55.000 0.00 0.00 0.00 4.16
2270 2659 1.003928 GGGAGACGGGTAAATGTGGTT 59.996 52.381 0.00 0.00 0.00 3.67
2271 2660 2.236893 GGGAGACGGGTAAATGTGGTTA 59.763 50.000 0.00 0.00 0.00 2.85
2272 2661 3.264947 GGAGACGGGTAAATGTGGTTAC 58.735 50.000 0.00 0.00 33.91 2.50
2319 2708 7.548196 AAAATACCGAGAATATTTCAAGCGA 57.452 32.000 0.00 0.00 32.31 4.93
2320 2709 7.548196 AAATACCGAGAATATTTCAAGCGAA 57.452 32.000 0.00 0.00 28.15 4.70
2321 2710 7.730364 AATACCGAGAATATTTCAAGCGAAT 57.270 32.000 0.00 0.00 0.00 3.34
2322 2711 7.730364 ATACCGAGAATATTTCAAGCGAATT 57.270 32.000 0.00 0.00 0.00 2.17
2323 2712 6.436843 ACCGAGAATATTTCAAGCGAATTT 57.563 33.333 0.00 0.00 0.00 1.82
2324 2713 6.852664 ACCGAGAATATTTCAAGCGAATTTT 58.147 32.000 0.00 0.00 0.00 1.82
2325 2714 7.981142 ACCGAGAATATTTCAAGCGAATTTTA 58.019 30.769 0.00 0.00 0.00 1.52
2326 2715 8.621286 ACCGAGAATATTTCAAGCGAATTTTAT 58.379 29.630 0.00 0.00 0.00 1.40
2360 2749 8.741101 TTTGAATTCAAATAAGTGGATGAACG 57.259 30.769 26.01 0.00 40.55 3.95
2361 2750 7.680442 TGAATTCAAATAAGTGGATGAACGA 57.320 32.000 5.45 0.00 34.88 3.85
2362 2751 8.105097 TGAATTCAAATAAGTGGATGAACGAA 57.895 30.769 5.45 0.00 34.88 3.85
2363 2752 8.739039 TGAATTCAAATAAGTGGATGAACGAAT 58.261 29.630 5.45 0.00 34.88 3.34
2368 2757 9.389755 TCAAATAAGTGGATGAACGAATATTCA 57.610 29.630 15.57 0.00 42.62 2.57
2372 2761 6.436843 AGTGGATGAACGAATATTCAAACC 57.563 37.500 15.57 9.37 41.78 3.27
2373 2762 5.943416 AGTGGATGAACGAATATTCAAACCA 59.057 36.000 15.57 11.45 41.78 3.67
2374 2763 6.094048 AGTGGATGAACGAATATTCAAACCAG 59.906 38.462 15.57 0.72 43.31 4.00
2375 2764 6.093495 GTGGATGAACGAATATTCAAACCAGA 59.907 38.462 15.57 0.00 43.31 3.86
2376 2765 6.316140 TGGATGAACGAATATTCAAACCAGAG 59.684 38.462 15.57 0.00 41.78 3.35
2377 2766 6.538742 GGATGAACGAATATTCAAACCAGAGA 59.461 38.462 15.57 0.00 41.78 3.10
2378 2767 6.721571 TGAACGAATATTCAAACCAGAGAC 57.278 37.500 15.57 0.00 35.65 3.36
2379 2768 5.642063 TGAACGAATATTCAAACCAGAGACC 59.358 40.000 15.57 0.00 35.65 3.85
2380 2769 5.422214 ACGAATATTCAAACCAGAGACCT 57.578 39.130 15.57 0.00 0.00 3.85
2381 2770 5.420409 ACGAATATTCAAACCAGAGACCTC 58.580 41.667 15.57 0.00 0.00 3.85
2382 2771 5.187967 ACGAATATTCAAACCAGAGACCTCT 59.812 40.000 15.57 0.00 41.37 3.69
2383 2772 5.751028 CGAATATTCAAACCAGAGACCTCTC 59.249 44.000 15.57 0.00 43.17 3.20
2384 2773 6.627087 AATATTCAAACCAGAGACCTCTCA 57.373 37.500 5.13 0.00 45.21 3.27
2385 2774 4.982241 ATTCAAACCAGAGACCTCTCAA 57.018 40.909 5.13 0.00 45.21 3.02
2386 2775 4.771114 TTCAAACCAGAGACCTCTCAAA 57.229 40.909 5.13 0.00 45.21 2.69
2387 2776 4.771114 TCAAACCAGAGACCTCTCAAAA 57.229 40.909 5.13 0.00 45.21 2.44
2388 2777 4.451900 TCAAACCAGAGACCTCTCAAAAC 58.548 43.478 5.13 0.00 45.21 2.43
2389 2778 4.080582 TCAAACCAGAGACCTCTCAAAACA 60.081 41.667 5.13 0.00 45.21 2.83
2390 2779 3.760580 ACCAGAGACCTCTCAAAACAG 57.239 47.619 5.13 0.00 45.21 3.16
2391 2780 2.370189 ACCAGAGACCTCTCAAAACAGG 59.630 50.000 5.13 0.00 45.21 4.00
2392 2781 2.634940 CCAGAGACCTCTCAAAACAGGA 59.365 50.000 5.13 0.00 45.21 3.86
2393 2782 3.071602 CCAGAGACCTCTCAAAACAGGAA 59.928 47.826 5.13 0.00 45.21 3.36
2394 2783 4.061596 CAGAGACCTCTCAAAACAGGAAC 58.938 47.826 5.13 0.00 45.21 3.62
2395 2784 3.970640 AGAGACCTCTCAAAACAGGAACT 59.029 43.478 5.13 0.00 45.21 3.01
2396 2785 5.011125 CAGAGACCTCTCAAAACAGGAACTA 59.989 44.000 5.13 0.00 45.21 2.24
2397 2786 5.245075 AGAGACCTCTCAAAACAGGAACTAG 59.755 44.000 5.13 0.00 45.21 2.57
2398 2787 4.284746 AGACCTCTCAAAACAGGAACTAGG 59.715 45.833 0.00 0.00 36.02 3.02
2399 2788 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
2400 2789 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
2401 2790 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
2402 2791 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
2403 2792 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
2404 2793 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
2405 2794 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
2406 2795 4.976540 AAACAGGAACTAGGTTGCTACT 57.023 40.909 4.28 0.00 42.02 2.57
2407 2796 6.042322 TCAAAACAGGAACTAGGTTGCTACTA 59.958 38.462 4.28 0.00 42.02 1.82
2408 2797 6.429521 AAACAGGAACTAGGTTGCTACTAA 57.570 37.500 4.28 0.00 42.02 2.24
2409 2798 5.402997 ACAGGAACTAGGTTGCTACTAAC 57.597 43.478 4.28 0.00 42.02 2.34
2410 2799 4.836736 ACAGGAACTAGGTTGCTACTAACA 59.163 41.667 4.28 0.00 42.02 2.41
2411 2800 5.484290 ACAGGAACTAGGTTGCTACTAACAT 59.516 40.000 4.28 0.00 42.02 2.71
2412 2801 5.812642 CAGGAACTAGGTTGCTACTAACATG 59.187 44.000 4.28 0.00 42.02 3.21
2413 2802 4.571176 GGAACTAGGTTGCTACTAACATGC 59.429 45.833 0.00 0.00 31.28 4.06
2414 2803 4.138487 ACTAGGTTGCTACTAACATGCC 57.862 45.455 0.00 0.00 32.22 4.40
2415 2804 3.517901 ACTAGGTTGCTACTAACATGCCA 59.482 43.478 0.00 0.00 32.22 4.92
2416 2805 2.991250 AGGTTGCTACTAACATGCCAG 58.009 47.619 0.00 0.00 32.22 4.85
2417 2806 2.571653 AGGTTGCTACTAACATGCCAGA 59.428 45.455 0.00 0.00 32.22 3.86
2418 2807 3.009033 AGGTTGCTACTAACATGCCAGAA 59.991 43.478 0.00 0.00 32.22 3.02
2419 2808 3.127030 GGTTGCTACTAACATGCCAGAAC 59.873 47.826 0.00 0.00 32.22 3.01
2420 2809 2.985896 TGCTACTAACATGCCAGAACC 58.014 47.619 0.00 0.00 0.00 3.62
2421 2810 2.304470 TGCTACTAACATGCCAGAACCA 59.696 45.455 0.00 0.00 0.00 3.67
2422 2811 3.244735 TGCTACTAACATGCCAGAACCAA 60.245 43.478 0.00 0.00 0.00 3.67
2423 2812 3.127030 GCTACTAACATGCCAGAACCAAC 59.873 47.826 0.00 0.00 0.00 3.77
2424 2813 3.508845 ACTAACATGCCAGAACCAACT 57.491 42.857 0.00 0.00 0.00 3.16
2425 2814 3.412386 ACTAACATGCCAGAACCAACTC 58.588 45.455 0.00 0.00 0.00 3.01
2426 2815 2.664402 AACATGCCAGAACCAACTCT 57.336 45.000 0.00 0.00 0.00 3.24
2427 2816 2.191128 ACATGCCAGAACCAACTCTC 57.809 50.000 0.00 0.00 0.00 3.20
2428 2817 1.421268 ACATGCCAGAACCAACTCTCA 59.579 47.619 0.00 0.00 0.00 3.27
2429 2818 2.040813 ACATGCCAGAACCAACTCTCAT 59.959 45.455 0.00 0.00 0.00 2.90
2430 2819 2.189594 TGCCAGAACCAACTCTCATG 57.810 50.000 0.00 0.00 0.00 3.07
2431 2820 1.271543 TGCCAGAACCAACTCTCATGG 60.272 52.381 0.00 0.00 43.84 3.66
2432 2821 1.457346 CCAGAACCAACTCTCATGGC 58.543 55.000 0.00 0.00 41.89 4.40
2433 2822 1.271543 CCAGAACCAACTCTCATGGCA 60.272 52.381 0.00 0.00 41.89 4.92
2434 2823 2.619849 CCAGAACCAACTCTCATGGCAT 60.620 50.000 0.00 0.00 41.89 4.40
2435 2824 3.087031 CAGAACCAACTCTCATGGCATT 58.913 45.455 0.00 0.00 41.89 3.56
2436 2825 4.264253 CAGAACCAACTCTCATGGCATTA 58.736 43.478 0.00 0.00 41.89 1.90
2437 2826 4.885907 CAGAACCAACTCTCATGGCATTAT 59.114 41.667 0.00 0.00 41.89 1.28
2438 2827 5.359009 CAGAACCAACTCTCATGGCATTATT 59.641 40.000 0.00 0.00 41.89 1.40
2439 2828 5.954150 AGAACCAACTCTCATGGCATTATTT 59.046 36.000 0.00 0.00 41.89 1.40
2440 2829 7.067372 CAGAACCAACTCTCATGGCATTATTTA 59.933 37.037 0.00 0.00 41.89 1.40
2441 2830 6.949352 ACCAACTCTCATGGCATTATTTAG 57.051 37.500 0.00 0.00 41.89 1.85
2442 2831 6.662755 ACCAACTCTCATGGCATTATTTAGA 58.337 36.000 0.00 0.00 41.89 2.10
2443 2832 7.293073 ACCAACTCTCATGGCATTATTTAGAT 58.707 34.615 0.00 0.00 41.89 1.98
2444 2833 7.446625 ACCAACTCTCATGGCATTATTTAGATC 59.553 37.037 0.00 0.00 41.89 2.75
2445 2834 7.094463 CCAACTCTCATGGCATTATTTAGATCC 60.094 40.741 0.00 0.00 0.00 3.36
2446 2835 7.327064 ACTCTCATGGCATTATTTAGATCCT 57.673 36.000 0.00 0.00 0.00 3.24
2447 2836 8.441311 ACTCTCATGGCATTATTTAGATCCTA 57.559 34.615 0.00 0.00 0.00 2.94
2448 2837 8.317679 ACTCTCATGGCATTATTTAGATCCTAC 58.682 37.037 0.00 0.00 0.00 3.18
2449 2838 7.323420 TCTCATGGCATTATTTAGATCCTACG 58.677 38.462 0.00 0.00 0.00 3.51
2450 2839 7.004555 TCATGGCATTATTTAGATCCTACGT 57.995 36.000 0.00 0.00 0.00 3.57
2451 2840 8.129496 TCATGGCATTATTTAGATCCTACGTA 57.871 34.615 0.00 0.00 0.00 3.57
2452 2841 8.033038 TCATGGCATTATTTAGATCCTACGTAC 58.967 37.037 0.00 0.00 0.00 3.67
2453 2842 7.534723 TGGCATTATTTAGATCCTACGTACT 57.465 36.000 0.00 0.00 0.00 2.73
2454 2843 7.959175 TGGCATTATTTAGATCCTACGTACTT 58.041 34.615 0.00 0.00 0.00 2.24
2455 2844 8.426489 TGGCATTATTTAGATCCTACGTACTTT 58.574 33.333 0.00 0.00 0.00 2.66
2456 2845 9.918630 GGCATTATTTAGATCCTACGTACTTTA 57.081 33.333 0.00 0.00 0.00 1.85
2466 2855 8.341173 AGATCCTACGTACTTTACTGTAAATCG 58.659 37.037 12.95 17.44 0.00 3.34
2467 2856 7.609760 TCCTACGTACTTTACTGTAAATCGA 57.390 36.000 24.48 10.26 0.00 3.59
2468 2857 7.688372 TCCTACGTACTTTACTGTAAATCGAG 58.312 38.462 24.48 19.15 0.00 4.04
2469 2858 7.334421 TCCTACGTACTTTACTGTAAATCGAGT 59.666 37.037 24.48 17.31 0.00 4.18
2470 2859 7.427606 CCTACGTACTTTACTGTAAATCGAGTG 59.572 40.741 24.48 12.98 0.00 3.51
2471 2860 6.672147 ACGTACTTTACTGTAAATCGAGTGT 58.328 36.000 24.48 16.45 0.00 3.55
2472 2861 7.141363 ACGTACTTTACTGTAAATCGAGTGTT 58.859 34.615 24.48 10.43 0.00 3.32
2473 2862 7.649306 ACGTACTTTACTGTAAATCGAGTGTTT 59.351 33.333 24.48 9.99 0.00 2.83
2474 2863 9.117145 CGTACTTTACTGTAAATCGAGTGTTTA 57.883 33.333 12.95 0.00 0.00 2.01
2523 2912 4.506886 TTTTTGTTCGGTATGGCGATTT 57.493 36.364 0.00 0.00 0.00 2.17
2524 2913 5.624344 TTTTTGTTCGGTATGGCGATTTA 57.376 34.783 0.00 0.00 0.00 1.40
2525 2914 4.603231 TTTGTTCGGTATGGCGATTTAC 57.397 40.909 0.00 0.00 0.00 2.01
2526 2915 2.553086 TGTTCGGTATGGCGATTTACC 58.447 47.619 0.00 0.00 35.52 2.85
2530 2919 1.792006 GGTATGGCGATTTACCGAGG 58.208 55.000 0.00 0.00 0.00 4.63
2531 2920 1.607251 GGTATGGCGATTTACCGAGGG 60.607 57.143 0.00 0.00 0.00 4.30
2532 2921 0.682852 TATGGCGATTTACCGAGGGG 59.317 55.000 0.00 0.00 40.11 4.79
2533 2922 2.590859 GGCGATTTACCGAGGGGC 60.591 66.667 0.00 0.00 36.48 5.80
2534 2923 2.188469 GCGATTTACCGAGGGGCA 59.812 61.111 0.00 0.00 36.48 5.36
2535 2924 2.178235 GCGATTTACCGAGGGGCAC 61.178 63.158 0.00 0.00 36.48 5.01
2536 2925 1.881252 CGATTTACCGAGGGGCACG 60.881 63.158 0.00 0.00 36.48 5.34
2543 2932 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
2544 2933 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
2545 2934 2.124860 AGGGGCACGGAAATACGC 60.125 61.111 0.00 0.00 37.37 4.42
2546 2935 3.569690 GGGGCACGGAAATACGCG 61.570 66.667 3.53 3.53 37.37 6.01
2547 2936 3.569690 GGGCACGGAAATACGCGG 61.570 66.667 12.47 0.00 37.37 6.46
2548 2937 2.816520 GGCACGGAAATACGCGGT 60.817 61.111 12.47 0.00 37.37 5.68
2549 2938 1.519013 GGCACGGAAATACGCGGTA 60.519 57.895 12.47 0.25 37.37 4.02
2550 2939 1.083242 GGCACGGAAATACGCGGTAA 61.083 55.000 12.47 0.00 37.37 2.85
2551 2940 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.000 12.47 0.00 37.37 2.50
2552 2941 0.646895 CACGGAAATACGCGGTAACC 59.353 55.000 12.47 6.30 37.37 2.85
2553 2942 0.246086 ACGGAAATACGCGGTAACCA 59.754 50.000 12.47 0.00 37.37 3.67
2554 2943 1.134729 ACGGAAATACGCGGTAACCAT 60.135 47.619 12.47 0.00 37.37 3.55
2555 2944 1.259507 CGGAAATACGCGGTAACCATG 59.740 52.381 12.47 0.00 0.00 3.66
2556 2945 1.600485 GGAAATACGCGGTAACCATGG 59.400 52.381 11.19 11.19 0.00 3.66
2557 2946 1.600485 GAAATACGCGGTAACCATGGG 59.400 52.381 18.09 0.00 0.00 4.00
2558 2947 0.831966 AATACGCGGTAACCATGGGA 59.168 50.000 18.09 0.00 0.00 4.37
2559 2948 0.831966 ATACGCGGTAACCATGGGAA 59.168 50.000 18.09 0.00 0.00 3.97
2560 2949 0.612229 TACGCGGTAACCATGGGAAA 59.388 50.000 18.09 0.00 0.00 3.13
2561 2950 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.000 18.09 1.59 0.00 2.17
2562 2951 0.661020 CGCGGTAACCATGGGAAATC 59.339 55.000 18.09 0.00 0.00 2.17
2563 2952 1.745827 CGCGGTAACCATGGGAAATCT 60.746 52.381 18.09 0.00 0.00 2.40
2564 2953 2.375146 GCGGTAACCATGGGAAATCTT 58.625 47.619 18.09 2.18 0.00 2.40
2565 2954 2.099098 GCGGTAACCATGGGAAATCTTG 59.901 50.000 18.09 0.00 0.00 3.02
2566 2955 3.616219 CGGTAACCATGGGAAATCTTGA 58.384 45.455 18.09 0.00 0.00 3.02
2567 2956 4.013728 CGGTAACCATGGGAAATCTTGAA 58.986 43.478 18.09 0.00 0.00 2.69
2568 2957 4.461081 CGGTAACCATGGGAAATCTTGAAA 59.539 41.667 18.09 0.00 0.00 2.69
2569 2958 5.127031 CGGTAACCATGGGAAATCTTGAAAT 59.873 40.000 18.09 0.00 0.00 2.17
2570 2959 6.350949 CGGTAACCATGGGAAATCTTGAAATT 60.351 38.462 18.09 0.00 0.00 1.82
2571 2960 7.394016 GGTAACCATGGGAAATCTTGAAATTT 58.606 34.615 18.09 0.00 0.00 1.82
2572 2961 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
2573 2962 5.723295 ACCATGGGAAATCTTGAAATTTCG 58.277 37.500 18.09 0.46 43.52 3.46
2574 2963 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
2575 2964 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
2576 2965 5.385509 TGGGAAATCTTGAAATTTCGACC 57.614 39.130 13.34 8.29 43.52 4.79
2577 2966 4.083003 TGGGAAATCTTGAAATTTCGACCG 60.083 41.667 13.34 1.46 43.52 4.79
2578 2967 4.412207 GGAAATCTTGAAATTTCGACCGG 58.588 43.478 13.34 0.00 43.52 5.28
2579 2968 4.082949 GGAAATCTTGAAATTTCGACCGGT 60.083 41.667 6.92 6.92 43.52 5.28
2580 2969 5.122711 GGAAATCTTGAAATTTCGACCGGTA 59.877 40.000 7.34 0.00 43.52 4.02
2581 2970 6.348704 GGAAATCTTGAAATTTCGACCGGTAA 60.349 38.462 7.34 0.00 43.52 2.85
2582 2971 4.996062 TCTTGAAATTTCGACCGGTAAC 57.004 40.909 7.34 0.00 0.00 2.50
2583 2972 3.747529 TCTTGAAATTTCGACCGGTAACC 59.252 43.478 7.34 0.00 0.00 2.85
2584 2973 3.123157 TGAAATTTCGACCGGTAACCA 57.877 42.857 7.34 0.00 0.00 3.67
2585 2974 3.474600 TGAAATTTCGACCGGTAACCAA 58.525 40.909 7.34 0.00 0.00 3.67
2586 2975 3.881688 TGAAATTTCGACCGGTAACCAAA 59.118 39.130 7.34 4.53 0.00 3.28
2587 2976 4.337555 TGAAATTTCGACCGGTAACCAAAA 59.662 37.500 7.34 4.39 0.00 2.44
2588 2977 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
2589 2978 1.592064 TTCGACCGGTAACCAAAACC 58.408 50.000 7.34 0.00 0.00 3.27
2590 2979 0.758123 TCGACCGGTAACCAAAACCT 59.242 50.000 7.34 0.00 34.66 3.50
2591 2980 1.140652 TCGACCGGTAACCAAAACCTT 59.859 47.619 7.34 0.00 34.66 3.50
2592 2981 1.264826 CGACCGGTAACCAAAACCTTG 59.735 52.381 7.34 0.00 34.66 3.61
2593 2982 1.001048 GACCGGTAACCAAAACCTTGC 60.001 52.381 7.34 0.00 34.66 4.01
2594 2983 0.039888 CCGGTAACCAAAACCTTGCG 60.040 55.000 0.00 0.00 34.66 4.85
2595 2984 0.664224 CGGTAACCAAAACCTTGCGT 59.336 50.000 0.00 0.00 34.66 5.24
2596 2985 1.598430 CGGTAACCAAAACCTTGCGTG 60.598 52.381 0.00 0.00 34.66 5.34
2597 2986 1.483316 GTAACCAAAACCTTGCGTGC 58.517 50.000 0.00 0.00 0.00 5.34
2598 2987 1.066454 GTAACCAAAACCTTGCGTGCT 59.934 47.619 0.00 0.00 0.00 4.40
2599 2988 0.179113 AACCAAAACCTTGCGTGCTG 60.179 50.000 0.00 0.00 0.00 4.41
2600 2989 1.319614 ACCAAAACCTTGCGTGCTGT 61.320 50.000 0.00 0.00 0.00 4.40
2610 2999 2.343758 CGTGCTGTACTGCCACCT 59.656 61.111 20.46 0.00 0.00 4.00
2808 3197 1.071814 TGTGGGTAGCCGGTGAAAC 59.928 57.895 1.90 0.00 0.00 2.78
2866 3255 6.168270 AGCTAAGAGGGATGAAGTATCAAC 57.832 41.667 0.00 0.00 39.49 3.18
2874 3263 3.456277 GGATGAAGTATCAACCTCCACCT 59.544 47.826 0.00 0.00 43.33 4.00
2914 3303 8.038944 CCAAGCTTAAACTAATGGTCACTACTA 58.961 37.037 0.00 0.00 0.00 1.82
2915 3304 9.088512 CAAGCTTAAACTAATGGTCACTACTAG 57.911 37.037 0.00 0.00 0.00 2.57
2947 3336 2.154462 ACTGTAAGAACTGCATGCACC 58.846 47.619 18.46 9.06 37.43 5.01
2977 3366 7.730084 TGGAGAAATATATGTGGAGTTCTGAG 58.270 38.462 0.82 0.00 0.00 3.35
2980 3369 7.215789 AGAAATATATGTGGAGTTCTGAGCAG 58.784 38.462 0.00 0.00 0.00 4.24
3030 3419 1.348250 CAATCGAACACCGGCGATG 59.652 57.895 9.30 2.86 45.50 3.84
3047 3440 1.308069 ATGTCGGCACCATGACTTGC 61.308 55.000 0.00 0.00 36.10 4.01
3048 3441 1.672356 GTCGGCACCATGACTTGCT 60.672 57.895 12.00 0.00 38.85 3.91
3049 3442 1.375908 TCGGCACCATGACTTGCTC 60.376 57.895 12.00 4.15 38.85 4.26
3050 3443 1.376424 CGGCACCATGACTTGCTCT 60.376 57.895 12.00 0.00 38.85 4.09
3051 3444 0.108186 CGGCACCATGACTTGCTCTA 60.108 55.000 12.00 0.00 38.85 2.43
3137 3531 1.272769 ACGAACTGTCCTCTAGCAACC 59.727 52.381 0.00 0.00 0.00 3.77
3177 3571 4.854399 TCTGCAATTTCACCTGTTTTACG 58.146 39.130 0.00 0.00 0.00 3.18
3184 3578 2.206750 TCACCTGTTTTACGACAGCAC 58.793 47.619 0.00 0.00 44.45 4.40
3185 3579 1.937223 CACCTGTTTTACGACAGCACA 59.063 47.619 0.00 0.00 44.45 4.57
3190 3584 2.353269 TGTTTTACGACAGCACAACAGG 59.647 45.455 0.00 0.00 0.00 4.00
3224 3618 3.327757 ACCAACAGAGGAGAACAGCATAA 59.672 43.478 0.00 0.00 0.00 1.90
3225 3619 4.202461 ACCAACAGAGGAGAACAGCATAAA 60.202 41.667 0.00 0.00 0.00 1.40
3226 3620 4.761739 CCAACAGAGGAGAACAGCATAAAA 59.238 41.667 0.00 0.00 0.00 1.52
3242 3636 8.571336 ACAGCATAAAATATAGGATTTGTCAGC 58.429 33.333 0.00 0.00 0.00 4.26
3253 3653 5.473039 AGGATTTGTCAGCTAAAAATGTGC 58.527 37.500 5.44 0.00 0.00 4.57
3256 3656 6.128742 GGATTTGTCAGCTAAAAATGTGCAAG 60.129 38.462 5.44 0.00 0.00 4.01
3266 3666 0.111061 AATGTGCAAGGCAGTGGAGA 59.889 50.000 0.00 0.00 40.08 3.71
3396 3798 5.160607 TCTGGATCAAACTGTCGGTTATT 57.839 39.130 0.00 0.00 37.12 1.40
3571 3976 5.342433 TCGCCATCATAAAGAAAAGCAATG 58.658 37.500 0.00 0.00 0.00 2.82
3686 4114 4.999950 CCAATGCCTAGACAACATAGATCC 59.000 45.833 0.00 0.00 0.00 3.36
3727 4188 3.772387 TGCAAGTTATGGGGTCAAATCA 58.228 40.909 0.00 0.00 0.00 2.57
3734 4196 8.720562 CAAGTTATGGGGTCAAATCAATTTTTC 58.279 33.333 0.00 0.00 0.00 2.29
3787 4249 2.512896 ACCTCCCAGATTTGCTCATCAT 59.487 45.455 0.00 0.00 0.00 2.45
3789 4251 3.318275 CCTCCCAGATTTGCTCATCATTG 59.682 47.826 0.00 0.00 0.00 2.82
3798 4260 7.534239 CAGATTTGCTCATCATTGTATTCATCG 59.466 37.037 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.683832 AGTTGGACTCTAATCACGTATGC 58.316 43.478 0.00 0.00 0.00 3.14
9 10 5.581085 GCAAAGTTGGACTCTAATCACGTAT 59.419 40.000 0.00 0.00 0.00 3.06
17 18 3.888323 TGCATTGCAAAGTTGGACTCTAA 59.112 39.130 9.33 0.00 34.76 2.10
52 53 0.250510 TGCAACAATGGTGGTAGCGA 60.251 50.000 0.00 0.00 0.00 4.93
53 54 0.595588 TTGCAACAATGGTGGTAGCG 59.404 50.000 0.00 0.00 0.00 4.26
54 55 2.029110 ACATTGCAACAATGGTGGTAGC 60.029 45.455 20.86 0.00 32.14 3.58
55 56 3.940209 ACATTGCAACAATGGTGGTAG 57.060 42.857 20.86 0.00 32.14 3.18
66 67 2.046313 CTCGCAGTGAAACATTGCAAC 58.954 47.619 16.57 0.00 45.27 4.17
69 70 2.405892 AACTCGCAGTGAAACATTGC 57.594 45.000 8.72 8.72 42.35 3.56
77 78 3.819564 ATATTGGCTAACTCGCAGTGA 57.180 42.857 0.00 0.00 0.00 3.41
78 79 4.882671 AAATATTGGCTAACTCGCAGTG 57.117 40.909 0.00 0.00 0.00 3.66
79 80 5.753921 GTCTAAATATTGGCTAACTCGCAGT 59.246 40.000 0.00 0.00 0.00 4.40
80 81 5.107837 CGTCTAAATATTGGCTAACTCGCAG 60.108 44.000 0.00 0.00 0.00 5.18
81 82 4.743151 CGTCTAAATATTGGCTAACTCGCA 59.257 41.667 0.00 0.00 0.00 5.10
82 83 4.376109 GCGTCTAAATATTGGCTAACTCGC 60.376 45.833 0.00 0.00 0.00 5.03
83 84 4.982916 AGCGTCTAAATATTGGCTAACTCG 59.017 41.667 0.00 0.00 0.00 4.18
84 85 7.813148 TCATAGCGTCTAAATATTGGCTAACTC 59.187 37.037 8.51 0.00 36.67 3.01
86 87 7.884816 TCATAGCGTCTAAATATTGGCTAAC 57.115 36.000 8.51 0.00 36.67 2.34
88 89 8.311109 TGATTCATAGCGTCTAAATATTGGCTA 58.689 33.333 0.00 0.00 37.39 3.93
89 90 7.161404 TGATTCATAGCGTCTAAATATTGGCT 58.839 34.615 0.00 0.00 34.69 4.75
90 91 7.331934 TCTGATTCATAGCGTCTAAATATTGGC 59.668 37.037 0.00 0.00 0.00 4.52
93 94 9.764363 TGTTCTGATTCATAGCGTCTAAATATT 57.236 29.630 0.00 0.00 0.00 1.28
96 97 8.668510 ATTGTTCTGATTCATAGCGTCTAAAT 57.331 30.769 0.00 0.00 0.00 1.40
138 220 5.049749 CGGTAAACACACATCAATCACTCAA 60.050 40.000 0.00 0.00 0.00 3.02
156 238 5.563475 CGTTAAACTCTGACCTCTCGGTAAA 60.563 44.000 0.00 0.00 45.73 2.01
170 252 5.995897 ACATTGCTCTTTACCGTTAAACTCT 59.004 36.000 0.00 0.00 0.00 3.24
171 253 6.073440 TCACATTGCTCTTTACCGTTAAACTC 60.073 38.462 0.00 0.00 0.00 3.01
247 329 9.947433 ATGGTGAATTTTGTAATCAATGATTGT 57.053 25.926 17.93 0.00 33.95 2.71
249 331 8.885722 GCATGGTGAATTTTGTAATCAATGATT 58.114 29.630 13.43 13.43 36.20 2.57
250 332 8.041919 TGCATGGTGAATTTTGTAATCAATGAT 58.958 29.630 0.00 0.00 33.32 2.45
251 333 7.384477 TGCATGGTGAATTTTGTAATCAATGA 58.616 30.769 0.00 0.00 33.32 2.57
252 334 7.201574 CCTGCATGGTGAATTTTGTAATCAATG 60.202 37.037 0.00 0.00 33.32 2.82
253 335 6.819649 CCTGCATGGTGAATTTTGTAATCAAT 59.180 34.615 0.00 0.00 33.32 2.57
254 336 6.164876 CCTGCATGGTGAATTTTGTAATCAA 58.835 36.000 0.00 0.00 0.00 2.57
255 337 5.337410 CCCTGCATGGTGAATTTTGTAATCA 60.337 40.000 0.00 0.00 0.00 2.57
256 338 5.111293 CCCTGCATGGTGAATTTTGTAATC 58.889 41.667 0.00 0.00 0.00 1.75
257 339 4.623647 GCCCTGCATGGTGAATTTTGTAAT 60.624 41.667 9.95 0.00 0.00 1.89
258 340 3.306641 GCCCTGCATGGTGAATTTTGTAA 60.307 43.478 9.95 0.00 0.00 2.41
259 341 2.233431 GCCCTGCATGGTGAATTTTGTA 59.767 45.455 9.95 0.00 0.00 2.41
260 342 1.002315 GCCCTGCATGGTGAATTTTGT 59.998 47.619 9.95 0.00 0.00 2.83
261 343 1.729284 GCCCTGCATGGTGAATTTTG 58.271 50.000 9.95 0.00 0.00 2.44
262 344 0.247185 CGCCCTGCATGGTGAATTTT 59.753 50.000 15.79 0.00 38.18 1.82
263 345 1.892338 CGCCCTGCATGGTGAATTT 59.108 52.632 15.79 0.00 38.18 1.82
264 346 2.713967 GCGCCCTGCATGGTGAATT 61.714 57.895 23.82 0.00 45.45 2.17
265 347 3.142838 GCGCCCTGCATGGTGAAT 61.143 61.111 23.82 0.00 45.45 2.57
274 356 1.064060 CTTAATAGTGTTGCGCCCTGC 59.936 52.381 4.18 0.00 46.70 4.85
275 357 2.627945 TCTTAATAGTGTTGCGCCCTG 58.372 47.619 4.18 0.00 0.00 4.45
276 358 3.560636 ATCTTAATAGTGTTGCGCCCT 57.439 42.857 4.18 0.00 0.00 5.19
277 359 3.497262 GGTATCTTAATAGTGTTGCGCCC 59.503 47.826 4.18 0.00 0.00 6.13
278 360 4.025145 GTGGTATCTTAATAGTGTTGCGCC 60.025 45.833 4.18 0.00 0.00 6.53
279 361 4.317839 CGTGGTATCTTAATAGTGTTGCGC 60.318 45.833 0.00 0.00 0.00 6.09
280 362 4.317839 GCGTGGTATCTTAATAGTGTTGCG 60.318 45.833 0.00 0.00 0.00 4.85
281 363 4.569162 TGCGTGGTATCTTAATAGTGTTGC 59.431 41.667 0.00 0.00 0.00 4.17
282 364 6.040247 TCTGCGTGGTATCTTAATAGTGTTG 58.960 40.000 0.00 0.00 0.00 3.33
283 365 6.216801 TCTGCGTGGTATCTTAATAGTGTT 57.783 37.500 0.00 0.00 0.00 3.32
284 366 5.736492 GCTCTGCGTGGTATCTTAATAGTGT 60.736 44.000 0.00 0.00 0.00 3.55
285 367 4.681942 GCTCTGCGTGGTATCTTAATAGTG 59.318 45.833 0.00 0.00 0.00 2.74
286 368 4.341235 TGCTCTGCGTGGTATCTTAATAGT 59.659 41.667 0.00 0.00 0.00 2.12
287 369 4.871513 TGCTCTGCGTGGTATCTTAATAG 58.128 43.478 0.00 0.00 0.00 1.73
288 370 4.929819 TGCTCTGCGTGGTATCTTAATA 57.070 40.909 0.00 0.00 0.00 0.98
289 371 3.819564 TGCTCTGCGTGGTATCTTAAT 57.180 42.857 0.00 0.00 0.00 1.40
290 372 3.819564 ATGCTCTGCGTGGTATCTTAA 57.180 42.857 0.00 0.00 0.00 1.85
291 373 3.118775 ACAATGCTCTGCGTGGTATCTTA 60.119 43.478 0.00 0.00 28.82 2.10
292 374 2.283298 CAATGCTCTGCGTGGTATCTT 58.717 47.619 0.00 0.00 0.00 2.40
293 375 1.208052 ACAATGCTCTGCGTGGTATCT 59.792 47.619 0.00 0.00 28.82 1.98
294 376 1.328680 CACAATGCTCTGCGTGGTATC 59.671 52.381 0.00 0.00 28.82 2.24
295 377 1.066215 TCACAATGCTCTGCGTGGTAT 60.066 47.619 0.00 0.00 28.82 2.73
296 378 0.320050 TCACAATGCTCTGCGTGGTA 59.680 50.000 0.00 0.00 28.82 3.25
297 379 0.534877 TTCACAATGCTCTGCGTGGT 60.535 50.000 0.00 0.00 30.97 4.16
298 380 0.806868 ATTCACAATGCTCTGCGTGG 59.193 50.000 0.00 0.00 0.00 4.94
299 381 2.624316 AATTCACAATGCTCTGCGTG 57.376 45.000 0.00 0.00 0.00 5.34
300 382 3.338249 AGTAATTCACAATGCTCTGCGT 58.662 40.909 0.00 0.00 0.00 5.24
301 383 3.620374 AGAGTAATTCACAATGCTCTGCG 59.380 43.478 0.00 0.00 34.71 5.18
302 384 5.122869 TCAAGAGTAATTCACAATGCTCTGC 59.877 40.000 0.00 0.00 35.57 4.26
303 385 6.732531 TCAAGAGTAATTCACAATGCTCTG 57.267 37.500 0.00 0.00 35.57 3.35
379 466 7.255906 GCTTTGAAAATTGGGAAATTGGGAAAT 60.256 33.333 0.00 0.00 0.00 2.17
413 500 0.107643 TGAACTGACGTGGGATTGCA 59.892 50.000 0.00 0.00 0.00 4.08
424 511 5.273944 GTTGGTGATCTTTGTTGAACTGAC 58.726 41.667 0.00 0.00 0.00 3.51
427 514 3.945285 ACGTTGGTGATCTTTGTTGAACT 59.055 39.130 0.00 0.00 0.00 3.01
479 580 2.936823 CCTAGCAAGGGGTGAGGAT 58.063 57.895 0.00 0.00 39.48 3.24
491 592 5.044476 TCACTTAATCCCATTTTCCCTAGCA 60.044 40.000 0.00 0.00 0.00 3.49
505 606 6.732896 TTACTCATCCTCCTCACTTAATCC 57.267 41.667 0.00 0.00 0.00 3.01
509 610 7.592736 TCCTAATTACTCATCCTCCTCACTTA 58.407 38.462 0.00 0.00 0.00 2.24
546 647 3.224269 TTCCCCTCCCCCTCCCTT 61.224 66.667 0.00 0.00 0.00 3.95
547 648 3.711782 CTTCCCCTCCCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
553 654 1.129917 GTACTTAGCTTCCCCTCCCC 58.870 60.000 0.00 0.00 0.00 4.81
557 658 3.396611 TGGTTTTGTACTTAGCTTCCCCT 59.603 43.478 0.00 0.00 0.00 4.79
558 659 3.756963 CTGGTTTTGTACTTAGCTTCCCC 59.243 47.826 0.00 0.00 0.00 4.81
563 664 3.559384 GGCCTCTGGTTTTGTACTTAGCT 60.559 47.826 0.00 0.00 0.00 3.32
585 686 2.240162 AAAAGGGGAGCCTACGAGCG 62.240 60.000 0.00 0.00 38.01 5.03
586 687 0.828677 TAAAAGGGGAGCCTACGAGC 59.171 55.000 0.00 0.00 0.00 5.03
590 691 1.064906 GGTGGTAAAAGGGGAGCCTAC 60.065 57.143 0.00 0.00 0.00 3.18
621 722 0.928922 CACTGACGCTCATGAGATGC 59.071 55.000 27.04 11.14 0.00 3.91
623 724 2.495270 AGAACACTGACGCTCATGAGAT 59.505 45.455 27.04 13.21 0.00 2.75
626 727 2.610479 GGAAGAACACTGACGCTCATGA 60.610 50.000 0.00 0.00 0.00 3.07
634 735 0.318784 ACTCGCGGAAGAACACTGAC 60.319 55.000 6.13 0.00 0.00 3.51
638 739 2.668280 GGCACTCGCGGAAGAACAC 61.668 63.158 6.13 0.00 39.92 3.32
642 928 3.611674 TGTGGCACTCGCGGAAGA 61.612 61.111 19.83 0.00 39.92 2.87
655 941 8.776376 AATCAAATAAAATAAAGCTGGTGTGG 57.224 30.769 0.00 0.00 0.00 4.17
675 961 8.723311 CACTTTTGTACCGAACCTATAAATCAA 58.277 33.333 0.00 0.00 0.00 2.57
752 1038 7.012421 GTCTTTTATGATGGACCCACTTGTATC 59.988 40.741 0.00 0.00 0.00 2.24
755 1041 5.010282 GTCTTTTATGATGGACCCACTTGT 58.990 41.667 0.00 0.00 0.00 3.16
756 1042 5.009631 TGTCTTTTATGATGGACCCACTTG 58.990 41.667 0.00 0.00 0.00 3.16
760 1046 4.569653 CCCTTGTCTTTTATGATGGACCCA 60.570 45.833 0.00 0.00 0.00 4.51
762 1048 3.954258 CCCCTTGTCTTTTATGATGGACC 59.046 47.826 0.00 0.00 0.00 4.46
768 1054 6.252995 AGCAAATACCCCTTGTCTTTTATGA 58.747 36.000 0.00 0.00 0.00 2.15
771 1057 7.639378 AGATAGCAAATACCCCTTGTCTTTTA 58.361 34.615 0.00 0.00 0.00 1.52
772 1058 6.494059 AGATAGCAAATACCCCTTGTCTTTT 58.506 36.000 0.00 0.00 0.00 2.27
774 1060 5.717119 AGATAGCAAATACCCCTTGTCTT 57.283 39.130 0.00 0.00 0.00 3.01
775 1061 6.426646 CTAGATAGCAAATACCCCTTGTCT 57.573 41.667 0.00 0.00 0.00 3.41
844 1130 2.672651 CTTGCCACGCCACCATCA 60.673 61.111 0.00 0.00 0.00 3.07
848 1134 2.749839 TATGCTTGCCACGCCACC 60.750 61.111 0.00 0.00 0.00 4.61
856 1142 3.016736 ACACACTATTGGTATGCTTGCC 58.983 45.455 0.00 0.00 0.00 4.52
868 1154 2.157834 TCGCAACCGAACACACTATT 57.842 45.000 0.00 0.00 41.17 1.73
925 1221 3.231160 GGTTTGCATTTCTAAACCGACG 58.769 45.455 0.16 0.00 44.29 5.12
999 1295 5.514279 CAGTTTCTTTCGCAATGTTCTCTT 58.486 37.500 0.00 0.00 0.00 2.85
1075 1373 1.407437 GGATGACCATCGGTTTGCTCT 60.407 52.381 4.15 0.00 38.69 4.09
1076 1374 1.017387 GGATGACCATCGGTTTGCTC 58.983 55.000 4.15 0.00 38.69 4.26
1078 1376 1.017387 GAGGATGACCATCGGTTTGC 58.983 55.000 4.15 0.00 38.69 3.68
1084 1382 3.736720 ACATGAATGAGGATGACCATCG 58.263 45.455 0.00 0.00 38.69 3.84
1091 1389 8.863086 ACCCATAAATTTACATGAATGAGGATG 58.137 33.333 0.00 0.00 0.00 3.51
1103 1401 6.975772 GCAAAATAGCGACCCATAAATTTACA 59.024 34.615 0.00 0.00 0.00 2.41
1115 1413 3.000727 ACTAGTGTGCAAAATAGCGACC 58.999 45.455 11.26 0.00 37.31 4.79
1130 1428 6.204108 ACCCGACTAAAAACAATCAACTAGTG 59.796 38.462 0.00 0.00 0.00 2.74
1172 1470 7.149307 GGGACGAATCAAAAACAGGATTAAAA 58.851 34.615 0.00 0.00 34.06 1.52
1197 1495 4.605793 CGACAACAAAAATGGCAATCAACG 60.606 41.667 0.00 0.00 0.00 4.10
1198 1496 4.760683 CGACAACAAAAATGGCAATCAAC 58.239 39.130 0.00 0.00 0.00 3.18
1218 1516 1.535226 GCATGTACGTAGGTGATGCGA 60.535 52.381 14.71 0.00 39.69 5.10
1228 1526 4.276431 TCCTTATCGACATGCATGTACGTA 59.724 41.667 31.45 22.62 41.95 3.57
1230 1528 3.638484 TCCTTATCGACATGCATGTACG 58.362 45.455 31.45 30.30 41.95 3.67
1235 1533 3.243873 ACGTCATCCTTATCGACATGCAT 60.244 43.478 0.00 0.00 0.00 3.96
1238 1536 3.309388 GGACGTCATCCTTATCGACATG 58.691 50.000 18.91 0.00 45.22 3.21
1239 1537 3.644884 GGACGTCATCCTTATCGACAT 57.355 47.619 18.91 0.00 45.22 3.06
1251 1549 6.884832 TGACTTATATTTCAAGGGACGTCAT 58.115 36.000 18.91 1.75 0.00 3.06
1264 1562 9.871238 CAAGGTATAGCCGTATGACTTATATTT 57.129 33.333 0.00 0.00 43.70 1.40
1269 1567 4.320714 CGCAAGGTATAGCCGTATGACTTA 60.321 45.833 0.00 0.00 43.70 2.24
1286 1584 2.138320 CATATGTGCTAGGACGCAAGG 58.862 52.381 10.02 0.00 42.32 3.61
1299 1597 6.815641 GGTCTCTTATAGCCATGACATATGTG 59.184 42.308 14.43 0.00 0.00 3.21
1309 1607 2.027745 CCGCATGGTCTCTTATAGCCAT 60.028 50.000 0.00 0.00 40.56 4.40
1349 1653 3.829601 ACATAAACCGGAATTTGAAGCCA 59.170 39.130 9.46 0.00 0.00 4.75
1350 1654 4.450082 ACATAAACCGGAATTTGAAGCC 57.550 40.909 9.46 0.00 0.00 4.35
1408 1756 7.148407 CCGTCCCATAATATATGAGCTTTTGTC 60.148 40.741 0.00 0.00 0.00 3.18
1410 1758 6.878923 TCCGTCCCATAATATATGAGCTTTTG 59.121 38.462 0.00 0.00 0.00 2.44
1415 1763 4.202264 CCCTCCGTCCCATAATATATGAGC 60.202 50.000 0.00 0.00 0.00 4.26
1419 1767 5.222278 ACTCCCTCCGTCCCATAATATAT 57.778 43.478 0.00 0.00 0.00 0.86
1429 1777 0.245813 GTGTTGTACTCCCTCCGTCC 59.754 60.000 0.00 0.00 0.00 4.79
1432 1780 3.446161 TCAATAGTGTTGTACTCCCTCCG 59.554 47.826 0.00 0.00 40.89 4.63
1433 1781 5.615925 ATCAATAGTGTTGTACTCCCTCC 57.384 43.478 0.00 0.00 40.89 4.30
1457 1816 9.123902 CCCTTTTCTTCCTTTTTGAATTCAAAT 57.876 29.630 29.13 0.00 44.30 2.32
1459 1818 7.856415 TCCCTTTTCTTCCTTTTTGAATTCAA 58.144 30.769 16.91 16.91 0.00 2.69
1462 1821 8.956426 GTTTTCCCTTTTCTTCCTTTTTGAATT 58.044 29.630 0.00 0.00 0.00 2.17
1465 1824 7.252612 AGTTTTCCCTTTTCTTCCTTTTTGA 57.747 32.000 0.00 0.00 0.00 2.69
1470 1829 6.669631 TCAGTAGTTTTCCCTTTTCTTCCTT 58.330 36.000 0.00 0.00 0.00 3.36
1472 1831 6.715264 TGATCAGTAGTTTTCCCTTTTCTTCC 59.285 38.462 0.00 0.00 0.00 3.46
1474 1833 8.712228 AATGATCAGTAGTTTTCCCTTTTCTT 57.288 30.769 0.09 0.00 0.00 2.52
1476 1835 9.196552 CAAAATGATCAGTAGTTTTCCCTTTTC 57.803 33.333 0.09 0.00 0.00 2.29
1477 1836 8.704668 ACAAAATGATCAGTAGTTTTCCCTTTT 58.295 29.630 0.09 0.00 0.00 2.27
1478 1837 8.143835 CACAAAATGATCAGTAGTTTTCCCTTT 58.856 33.333 0.09 0.00 0.00 3.11
1479 1838 7.255942 CCACAAAATGATCAGTAGTTTTCCCTT 60.256 37.037 0.09 0.00 0.00 3.95
1480 1839 6.209391 CCACAAAATGATCAGTAGTTTTCCCT 59.791 38.462 0.09 0.00 0.00 4.20
1481 1840 6.015434 ACCACAAAATGATCAGTAGTTTTCCC 60.015 38.462 0.09 0.00 0.00 3.97
1482 1841 6.981722 ACCACAAAATGATCAGTAGTTTTCC 58.018 36.000 0.09 0.00 0.00 3.13
1486 1845 7.346751 ACAAACCACAAAATGATCAGTAGTT 57.653 32.000 0.09 0.00 0.00 2.24
1496 1855 2.539274 CGGCTGAACAAACCACAAAATG 59.461 45.455 0.00 0.00 0.00 2.32
1522 1882 1.006688 CGGTGACCACGTGACATCA 60.007 57.895 19.30 14.59 0.00 3.07
1548 1908 2.105821 AGAGGTGGGATTGTTGACGAAA 59.894 45.455 0.00 0.00 0.00 3.46
1615 1975 8.826710 CGCTCCATGATACAAATTCTAACTTAA 58.173 33.333 0.00 0.00 0.00 1.85
1620 1980 7.216494 TGATCGCTCCATGATACAAATTCTAA 58.784 34.615 0.00 0.00 0.00 2.10
1633 2018 4.129380 TGGAAACTAATGATCGCTCCATG 58.871 43.478 0.00 0.00 0.00 3.66
1649 2034 4.088648 CGTACGCAATTCAAGATGGAAAC 58.911 43.478 0.52 0.00 0.00 2.78
1803 2192 4.954970 CGTGGCCCAGCTTGGTGT 62.955 66.667 5.61 0.00 35.17 4.16
1891 2280 2.145397 AAGCCAGTATGTCTCCGAGA 57.855 50.000 0.00 0.00 0.00 4.04
2014 2403 2.203015 GTGGTGGCACAGACGTGT 60.203 61.111 20.82 0.00 45.50 4.49
2023 2412 1.071987 CTCTTGCTCTGTGGTGGCA 59.928 57.895 0.00 0.00 0.00 4.92
2032 2421 0.913451 ACTCCATGGCCTCTTGCTCT 60.913 55.000 6.96 0.00 40.92 4.09
2040 2429 4.473520 CGGCGAACTCCATGGCCT 62.474 66.667 6.96 0.00 41.57 5.19
2214 2603 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
2215 2604 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
2216 2605 3.418047 CCTCATTCGGTAACCAAAACCT 58.582 45.455 0.00 0.00 34.66 3.50
2217 2606 2.094906 GCCTCATTCGGTAACCAAAACC 60.095 50.000 0.00 0.00 0.00 3.27
2218 2607 2.554893 TGCCTCATTCGGTAACCAAAAC 59.445 45.455 0.00 0.00 0.00 2.43
2219 2608 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
2220 2609 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
2221 2610 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
2222 2611 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
2223 2612 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
2224 2613 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
2225 2614 4.095185 CGGTAAAATTGCCTCATTCGGTAA 59.905 41.667 0.00 0.00 33.14 2.85
2226 2615 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
2227 2616 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
2228 2617 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
2229 2618 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
2230 2619 3.066760 CCCTCGGTAAAATTGCCTCATTC 59.933 47.826 0.00 0.00 0.00 2.67
2231 2620 3.023832 CCCTCGGTAAAATTGCCTCATT 58.976 45.455 0.00 0.00 0.00 2.57
2232 2621 2.241176 TCCCTCGGTAAAATTGCCTCAT 59.759 45.455 0.00 0.00 0.00 2.90
2233 2622 1.631388 TCCCTCGGTAAAATTGCCTCA 59.369 47.619 0.00 0.00 0.00 3.86
2234 2623 2.093128 TCTCCCTCGGTAAAATTGCCTC 60.093 50.000 0.00 0.00 0.00 4.70
2235 2624 1.913419 TCTCCCTCGGTAAAATTGCCT 59.087 47.619 0.00 0.00 0.00 4.75
2236 2625 2.014857 GTCTCCCTCGGTAAAATTGCC 58.985 52.381 0.00 0.00 0.00 4.52
2237 2626 1.664151 CGTCTCCCTCGGTAAAATTGC 59.336 52.381 0.00 0.00 0.00 3.56
2238 2627 2.277084 CCGTCTCCCTCGGTAAAATTG 58.723 52.381 0.00 0.00 42.62 2.32
2239 2628 1.208776 CCCGTCTCCCTCGGTAAAATT 59.791 52.381 3.78 0.00 45.63 1.82
2240 2629 0.828677 CCCGTCTCCCTCGGTAAAAT 59.171 55.000 3.78 0.00 45.63 1.82
2241 2630 0.542702 ACCCGTCTCCCTCGGTAAAA 60.543 55.000 3.78 0.00 45.63 1.52
2242 2631 0.331278 TACCCGTCTCCCTCGGTAAA 59.669 55.000 3.78 0.00 45.63 2.01
2243 2632 0.331278 TTACCCGTCTCCCTCGGTAA 59.669 55.000 3.78 0.00 45.63 2.85
2244 2633 0.331278 TTTACCCGTCTCCCTCGGTA 59.669 55.000 3.78 0.00 45.63 4.02
2245 2634 0.325016 ATTTACCCGTCTCCCTCGGT 60.325 55.000 3.78 0.00 45.63 4.69
2246 2635 0.104304 CATTTACCCGTCTCCCTCGG 59.896 60.000 0.00 0.00 46.49 4.63
2247 2636 0.822164 ACATTTACCCGTCTCCCTCG 59.178 55.000 0.00 0.00 0.00 4.63
2248 2637 1.134491 CCACATTTACCCGTCTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
2249 2638 0.909623 CCACATTTACCCGTCTCCCT 59.090 55.000 0.00 0.00 0.00 4.20
2250 2639 0.616891 ACCACATTTACCCGTCTCCC 59.383 55.000 0.00 0.00 0.00 4.30
2251 2640 2.484742 AACCACATTTACCCGTCTCC 57.515 50.000 0.00 0.00 0.00 3.71
2252 2641 3.264947 GGTAACCACATTTACCCGTCTC 58.735 50.000 1.21 0.00 43.73 3.36
2253 2642 3.339253 GGTAACCACATTTACCCGTCT 57.661 47.619 1.21 0.00 43.73 4.18
2294 2683 7.981142 TCGCTTGAAATATTCTCGGTATTTTT 58.019 30.769 0.00 0.00 33.23 1.94
2295 2684 7.548196 TCGCTTGAAATATTCTCGGTATTTT 57.452 32.000 0.00 0.00 33.23 1.82
2296 2685 7.548196 TTCGCTTGAAATATTCTCGGTATTT 57.452 32.000 0.00 0.00 35.16 1.40
2297 2686 7.730364 ATTCGCTTGAAATATTCTCGGTATT 57.270 32.000 0.00 0.00 34.72 1.89
2298 2687 7.730364 AATTCGCTTGAAATATTCTCGGTAT 57.270 32.000 0.00 0.00 34.72 2.73
2299 2688 7.548196 AAATTCGCTTGAAATATTCTCGGTA 57.452 32.000 0.00 0.00 34.72 4.02
2300 2689 6.436843 AAATTCGCTTGAAATATTCTCGGT 57.563 33.333 0.00 0.00 34.72 4.69
2336 2725 8.105097 TCGTTCATCCACTTATTTGAATTCAA 57.895 30.769 16.91 16.91 31.39 2.69
2337 2726 7.680442 TCGTTCATCCACTTATTTGAATTCA 57.320 32.000 3.38 3.38 31.39 2.57
2342 2731 9.389755 TGAATATTCGTTCATCCACTTATTTGA 57.610 29.630 10.80 0.00 33.41 2.69
2346 2735 8.621286 GGTTTGAATATTCGTTCATCCACTTAT 58.379 33.333 10.80 0.00 37.88 1.73
2347 2736 7.608376 TGGTTTGAATATTCGTTCATCCACTTA 59.392 33.333 10.80 0.00 37.45 2.24
2348 2737 6.432783 TGGTTTGAATATTCGTTCATCCACTT 59.567 34.615 10.80 0.00 37.45 3.16
2349 2738 5.943416 TGGTTTGAATATTCGTTCATCCACT 59.057 36.000 10.80 0.00 37.45 4.00
2350 2739 6.093495 TCTGGTTTGAATATTCGTTCATCCAC 59.907 38.462 10.80 0.00 37.45 4.02
2351 2740 6.176896 TCTGGTTTGAATATTCGTTCATCCA 58.823 36.000 10.80 11.09 38.69 3.41
2352 2741 6.538742 TCTCTGGTTTGAATATTCGTTCATCC 59.461 38.462 10.80 7.66 37.88 3.51
2353 2742 7.402640 GTCTCTGGTTTGAATATTCGTTCATC 58.597 38.462 10.80 0.00 37.88 2.92
2354 2743 6.316390 GGTCTCTGGTTTGAATATTCGTTCAT 59.684 38.462 10.80 0.00 37.88 2.57
2355 2744 5.642063 GGTCTCTGGTTTGAATATTCGTTCA 59.358 40.000 10.80 5.87 36.38 3.18
2356 2745 5.875359 AGGTCTCTGGTTTGAATATTCGTTC 59.125 40.000 10.80 3.54 0.00 3.95
2357 2746 5.805728 AGGTCTCTGGTTTGAATATTCGTT 58.194 37.500 10.80 0.00 0.00 3.85
2358 2747 5.187967 AGAGGTCTCTGGTTTGAATATTCGT 59.812 40.000 10.80 0.00 38.75 3.85
2359 2748 5.665459 AGAGGTCTCTGGTTTGAATATTCG 58.335 41.667 10.80 0.00 38.75 3.34
2360 2749 6.644347 TGAGAGGTCTCTGGTTTGAATATTC 58.356 40.000 8.60 8.60 43.25 1.75
2361 2750 6.627087 TGAGAGGTCTCTGGTTTGAATATT 57.373 37.500 5.09 0.00 43.25 1.28
2362 2751 6.627087 TTGAGAGGTCTCTGGTTTGAATAT 57.373 37.500 5.09 0.00 43.25 1.28
2363 2752 6.433847 TTTGAGAGGTCTCTGGTTTGAATA 57.566 37.500 5.09 0.00 43.25 1.75
2364 2753 4.982241 TTGAGAGGTCTCTGGTTTGAAT 57.018 40.909 5.09 0.00 43.25 2.57
2365 2754 4.771114 TTTGAGAGGTCTCTGGTTTGAA 57.229 40.909 5.09 0.00 43.25 2.69
2366 2755 4.080582 TGTTTTGAGAGGTCTCTGGTTTGA 60.081 41.667 5.09 0.00 43.25 2.69
2367 2756 4.199310 TGTTTTGAGAGGTCTCTGGTTTG 58.801 43.478 5.09 0.00 43.25 2.93
2368 2757 4.455606 CTGTTTTGAGAGGTCTCTGGTTT 58.544 43.478 5.09 0.00 43.25 3.27
2369 2758 3.181450 CCTGTTTTGAGAGGTCTCTGGTT 60.181 47.826 5.09 0.00 43.25 3.67
2370 2759 2.370189 CCTGTTTTGAGAGGTCTCTGGT 59.630 50.000 5.09 0.00 43.25 4.00
2371 2760 2.634940 TCCTGTTTTGAGAGGTCTCTGG 59.365 50.000 5.09 0.00 43.25 3.86
2372 2761 4.061596 GTTCCTGTTTTGAGAGGTCTCTG 58.938 47.826 5.09 0.00 43.25 3.35
2373 2762 3.970640 AGTTCCTGTTTTGAGAGGTCTCT 59.029 43.478 8.44 0.00 43.25 3.10
2374 2763 4.344359 AGTTCCTGTTTTGAGAGGTCTC 57.656 45.455 0.00 0.00 43.15 3.36
2375 2764 4.284746 CCTAGTTCCTGTTTTGAGAGGTCT 59.715 45.833 0.00 0.00 0.00 3.85
2376 2765 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
2377 2766 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
2378 2767 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
2379 2768 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
2380 2769 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
2381 2770 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
2382 2771 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
2383 2772 5.063880 AGTAGCAACCTAGTTCCTGTTTTG 58.936 41.667 0.00 0.00 0.00 2.44
2384 2773 5.306114 AGTAGCAACCTAGTTCCTGTTTT 57.694 39.130 0.00 0.00 0.00 2.43
2385 2774 4.976540 AGTAGCAACCTAGTTCCTGTTT 57.023 40.909 0.00 0.00 0.00 2.83
2386 2775 5.306160 TGTTAGTAGCAACCTAGTTCCTGTT 59.694 40.000 0.00 0.00 0.00 3.16
2387 2776 4.836736 TGTTAGTAGCAACCTAGTTCCTGT 59.163 41.667 0.00 0.00 0.00 4.00
2388 2777 5.401531 TGTTAGTAGCAACCTAGTTCCTG 57.598 43.478 0.00 0.00 0.00 3.86
2389 2778 5.627040 GCATGTTAGTAGCAACCTAGTTCCT 60.627 44.000 0.00 0.00 0.00 3.36
2390 2779 4.571176 GCATGTTAGTAGCAACCTAGTTCC 59.429 45.833 0.00 0.00 0.00 3.62
2391 2780 4.571176 GGCATGTTAGTAGCAACCTAGTTC 59.429 45.833 0.00 0.00 0.00 3.01
2392 2781 4.019681 TGGCATGTTAGTAGCAACCTAGTT 60.020 41.667 9.75 0.00 0.00 2.24
2393 2782 3.517901 TGGCATGTTAGTAGCAACCTAGT 59.482 43.478 9.75 0.00 0.00 2.57
2394 2783 4.122776 CTGGCATGTTAGTAGCAACCTAG 58.877 47.826 9.75 0.62 0.00 3.02
2395 2784 3.772572 TCTGGCATGTTAGTAGCAACCTA 59.227 43.478 9.75 0.00 0.00 3.08
2396 2785 2.571653 TCTGGCATGTTAGTAGCAACCT 59.428 45.455 9.75 0.00 0.00 3.50
2397 2786 2.985896 TCTGGCATGTTAGTAGCAACC 58.014 47.619 0.00 0.00 0.00 3.77
2398 2787 3.127030 GGTTCTGGCATGTTAGTAGCAAC 59.873 47.826 0.00 0.00 0.00 4.17
2399 2788 3.244735 TGGTTCTGGCATGTTAGTAGCAA 60.245 43.478 0.00 0.00 0.00 3.91
2400 2789 2.304470 TGGTTCTGGCATGTTAGTAGCA 59.696 45.455 0.00 0.54 0.00 3.49
2401 2790 2.985896 TGGTTCTGGCATGTTAGTAGC 58.014 47.619 0.00 0.00 0.00 3.58
2402 2791 4.579869 AGTTGGTTCTGGCATGTTAGTAG 58.420 43.478 0.00 0.00 0.00 2.57
2403 2792 4.286032 AGAGTTGGTTCTGGCATGTTAGTA 59.714 41.667 0.00 0.00 0.00 1.82
2404 2793 3.073062 AGAGTTGGTTCTGGCATGTTAGT 59.927 43.478 0.00 0.00 0.00 2.24
2405 2794 3.679389 AGAGTTGGTTCTGGCATGTTAG 58.321 45.455 0.00 0.00 0.00 2.34
2406 2795 3.072330 TGAGAGTTGGTTCTGGCATGTTA 59.928 43.478 0.00 0.00 0.00 2.41
2407 2796 2.158623 TGAGAGTTGGTTCTGGCATGTT 60.159 45.455 0.00 0.00 0.00 2.71
2408 2797 1.421268 TGAGAGTTGGTTCTGGCATGT 59.579 47.619 0.00 0.00 0.00 3.21
2409 2798 2.189594 TGAGAGTTGGTTCTGGCATG 57.810 50.000 0.00 0.00 0.00 4.06
2410 2799 2.619849 CCATGAGAGTTGGTTCTGGCAT 60.620 50.000 0.00 0.00 0.00 4.40
2411 2800 1.271543 CCATGAGAGTTGGTTCTGGCA 60.272 52.381 0.00 0.00 0.00 4.92
2412 2801 1.457346 CCATGAGAGTTGGTTCTGGC 58.543 55.000 0.00 0.00 0.00 4.85
2413 2802 1.271543 TGCCATGAGAGTTGGTTCTGG 60.272 52.381 0.00 0.00 36.57 3.86
2414 2803 2.189594 TGCCATGAGAGTTGGTTCTG 57.810 50.000 0.00 0.00 36.57 3.02
2415 2804 3.446442 AATGCCATGAGAGTTGGTTCT 57.554 42.857 0.00 0.00 36.57 3.01
2416 2805 5.841957 AATAATGCCATGAGAGTTGGTTC 57.158 39.130 0.00 0.00 36.57 3.62
2417 2806 7.118723 TCTAAATAATGCCATGAGAGTTGGTT 58.881 34.615 0.00 0.00 36.57 3.67
2418 2807 6.662755 TCTAAATAATGCCATGAGAGTTGGT 58.337 36.000 0.00 0.00 36.57 3.67
2419 2808 7.094463 GGATCTAAATAATGCCATGAGAGTTGG 60.094 40.741 0.00 0.00 37.31 3.77
2420 2809 7.664731 AGGATCTAAATAATGCCATGAGAGTTG 59.335 37.037 0.00 0.00 0.00 3.16
2421 2810 7.753630 AGGATCTAAATAATGCCATGAGAGTT 58.246 34.615 0.00 0.00 0.00 3.01
2422 2811 7.327064 AGGATCTAAATAATGCCATGAGAGT 57.673 36.000 0.00 0.00 0.00 3.24
2423 2812 7.490725 CGTAGGATCTAAATAATGCCATGAGAG 59.509 40.741 0.00 0.00 0.00 3.20
2424 2813 7.039011 ACGTAGGATCTAAATAATGCCATGAGA 60.039 37.037 0.00 0.00 0.00 3.27
2425 2814 7.099764 ACGTAGGATCTAAATAATGCCATGAG 58.900 38.462 0.00 0.00 0.00 2.90
2426 2815 7.004555 ACGTAGGATCTAAATAATGCCATGA 57.995 36.000 0.00 0.00 0.00 3.07
2427 2816 8.035394 AGTACGTAGGATCTAAATAATGCCATG 58.965 37.037 0.00 0.00 0.00 3.66
2428 2817 8.135382 AGTACGTAGGATCTAAATAATGCCAT 57.865 34.615 0.00 0.00 0.00 4.40
2429 2818 7.534723 AGTACGTAGGATCTAAATAATGCCA 57.465 36.000 0.00 0.00 0.00 4.92
2430 2819 8.828688 AAAGTACGTAGGATCTAAATAATGCC 57.171 34.615 0.00 0.00 0.00 4.40
2440 2829 8.341173 CGATTTACAGTAAAGTACGTAGGATCT 58.659 37.037 11.41 0.00 0.00 2.75
2441 2830 8.338259 TCGATTTACAGTAAAGTACGTAGGATC 58.662 37.037 19.69 7.47 0.00 3.36
2442 2831 8.213518 TCGATTTACAGTAAAGTACGTAGGAT 57.786 34.615 19.69 1.09 0.00 3.24
2443 2832 7.334421 ACTCGATTTACAGTAAAGTACGTAGGA 59.666 37.037 19.69 8.28 0.00 2.94
2444 2833 7.427606 CACTCGATTTACAGTAAAGTACGTAGG 59.572 40.741 19.69 15.59 0.00 3.18
2445 2834 7.959651 ACACTCGATTTACAGTAAAGTACGTAG 59.040 37.037 19.69 17.80 0.00 3.51
2446 2835 7.806690 ACACTCGATTTACAGTAAAGTACGTA 58.193 34.615 19.69 0.00 0.00 3.57
2447 2836 6.672147 ACACTCGATTTACAGTAAAGTACGT 58.328 36.000 19.69 0.00 0.00 3.57
2448 2837 7.558435 AACACTCGATTTACAGTAAAGTACG 57.442 36.000 11.41 14.68 0.00 3.67
2502 2891 4.506886 AAATCGCCATACCGAACAAAAA 57.493 36.364 0.00 0.00 41.01 1.94
2503 2892 4.142643 GGTAAATCGCCATACCGAACAAAA 60.143 41.667 0.00 0.00 41.01 2.44
2504 2893 3.374678 GGTAAATCGCCATACCGAACAAA 59.625 43.478 0.00 0.00 41.01 2.83
2505 2894 2.937799 GGTAAATCGCCATACCGAACAA 59.062 45.455 0.00 0.00 41.01 2.83
2506 2895 2.553086 GGTAAATCGCCATACCGAACA 58.447 47.619 0.00 0.00 41.01 3.18
2511 2900 1.607251 CCCTCGGTAAATCGCCATACC 60.607 57.143 0.00 0.00 38.55 2.73
2512 2901 1.607251 CCCCTCGGTAAATCGCCATAC 60.607 57.143 0.00 0.00 0.00 2.39
2513 2902 0.682852 CCCCTCGGTAAATCGCCATA 59.317 55.000 0.00 0.00 0.00 2.74
2514 2903 1.450211 CCCCTCGGTAAATCGCCAT 59.550 57.895 0.00 0.00 0.00 4.40
2515 2904 2.904905 CCCCTCGGTAAATCGCCA 59.095 61.111 0.00 0.00 0.00 5.69
2516 2905 2.590859 GCCCCTCGGTAAATCGCC 60.591 66.667 0.00 0.00 0.00 5.54
2517 2906 2.178235 GTGCCCCTCGGTAAATCGC 61.178 63.158 0.00 0.00 0.00 4.58
2518 2907 1.881252 CGTGCCCCTCGGTAAATCG 60.881 63.158 0.00 0.00 0.00 3.34
2519 2908 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
2520 2909 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
2521 2910 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
2522 2911 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
2523 2912 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
2524 2913 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
2526 2915 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
2527 2916 2.178235 GCGTATTTCCGTGCCCCTC 61.178 63.158 0.00 0.00 0.00 4.30
2528 2917 2.124860 GCGTATTTCCGTGCCCCT 60.125 61.111 0.00 0.00 0.00 4.79
2529 2918 3.569690 CGCGTATTTCCGTGCCCC 61.570 66.667 0.00 0.00 0.00 5.80
2530 2919 2.904470 TACCGCGTATTTCCGTGCCC 62.904 60.000 4.92 0.00 37.03 5.36
2531 2920 1.083242 TTACCGCGTATTTCCGTGCC 61.083 55.000 4.92 0.00 37.03 5.01
2532 2921 0.025384 GTTACCGCGTATTTCCGTGC 59.975 55.000 4.92 0.00 37.03 5.34
2533 2922 0.646895 GGTTACCGCGTATTTCCGTG 59.353 55.000 4.92 0.00 38.04 4.94
2534 2923 0.246086 TGGTTACCGCGTATTTCCGT 59.754 50.000 4.92 0.00 0.00 4.69
2535 2924 1.259507 CATGGTTACCGCGTATTTCCG 59.740 52.381 4.92 0.00 0.00 4.30
2536 2925 1.600485 CCATGGTTACCGCGTATTTCC 59.400 52.381 4.92 1.35 0.00 3.13
2537 2926 1.600485 CCCATGGTTACCGCGTATTTC 59.400 52.381 11.73 0.00 0.00 2.17
2538 2927 1.209990 TCCCATGGTTACCGCGTATTT 59.790 47.619 11.73 0.00 0.00 1.40
2539 2928 0.831966 TCCCATGGTTACCGCGTATT 59.168 50.000 11.73 0.00 0.00 1.89
2540 2929 0.831966 TTCCCATGGTTACCGCGTAT 59.168 50.000 11.73 0.00 0.00 3.06
2541 2930 0.612229 TTTCCCATGGTTACCGCGTA 59.388 50.000 11.73 0.00 0.00 4.42
2542 2931 0.034863 ATTTCCCATGGTTACCGCGT 60.035 50.000 11.73 0.00 0.00 6.01
2543 2932 0.661020 GATTTCCCATGGTTACCGCG 59.339 55.000 11.73 0.00 0.00 6.46
2544 2933 2.052782 AGATTTCCCATGGTTACCGC 57.947 50.000 11.73 0.00 0.00 5.68
2545 2934 3.616219 TCAAGATTTCCCATGGTTACCG 58.384 45.455 11.73 0.00 0.00 4.02
2546 2935 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
2547 2936 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
2548 2937 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
2549 2938 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
2550 2939 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
2551 2940 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
2552 2941 5.807011 GGTCGAAATTTCAAGATTTCCCATG 59.193 40.000 17.99 0.00 41.02 3.66
2553 2942 5.393027 CGGTCGAAATTTCAAGATTTCCCAT 60.393 40.000 17.99 0.00 41.02 4.00
2554 2943 4.083003 CGGTCGAAATTTCAAGATTTCCCA 60.083 41.667 17.99 0.00 41.02 4.37
2555 2944 4.412207 CGGTCGAAATTTCAAGATTTCCC 58.588 43.478 17.99 5.09 41.02 3.97
2556 2945 4.082949 ACCGGTCGAAATTTCAAGATTTCC 60.083 41.667 17.99 5.39 41.02 3.13
2557 2946 5.043189 ACCGGTCGAAATTTCAAGATTTC 57.957 39.130 17.99 0.00 40.80 2.17
2558 2947 6.376177 GTTACCGGTCGAAATTTCAAGATTT 58.624 36.000 12.40 0.99 32.16 2.17
2559 2948 5.106436 GGTTACCGGTCGAAATTTCAAGATT 60.106 40.000 12.40 0.52 0.00 2.40
2560 2949 4.393990 GGTTACCGGTCGAAATTTCAAGAT 59.606 41.667 12.40 1.22 0.00 2.40
2561 2950 3.747529 GGTTACCGGTCGAAATTTCAAGA 59.252 43.478 12.40 5.43 0.00 3.02
2562 2951 3.499157 TGGTTACCGGTCGAAATTTCAAG 59.501 43.478 12.40 3.07 0.00 3.02
2563 2952 3.474600 TGGTTACCGGTCGAAATTTCAA 58.525 40.909 12.40 0.00 0.00 2.69
2564 2953 3.123157 TGGTTACCGGTCGAAATTTCA 57.877 42.857 12.40 2.95 0.00 2.69
2565 2954 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
2566 2955 4.499526 GGTTTTGGTTACCGGTCGAAATTT 60.500 41.667 12.40 0.00 0.00 1.82
2567 2956 3.004629 GGTTTTGGTTACCGGTCGAAATT 59.995 43.478 12.40 0.00 0.00 1.82
2568 2957 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
2569 2958 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
2570 2959 1.140652 AGGTTTTGGTTACCGGTCGAA 59.859 47.619 12.40 0.00 40.69 3.71
2571 2960 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
2572 2961 1.264826 CAAGGTTTTGGTTACCGGTCG 59.735 52.381 12.40 0.00 40.69 4.79
2573 2962 1.001048 GCAAGGTTTTGGTTACCGGTC 60.001 52.381 12.40 0.00 40.69 4.79
2574 2963 1.034356 GCAAGGTTTTGGTTACCGGT 58.966 50.000 13.98 13.98 40.69 5.28
2575 2964 0.039888 CGCAAGGTTTTGGTTACCGG 60.040 55.000 0.00 0.00 40.69 5.28
2576 2965 0.664224 ACGCAAGGTTTTGGTTACCG 59.336 50.000 0.00 0.00 46.39 4.02
2577 2966 1.866471 GCACGCAAGGTTTTGGTTACC 60.866 52.381 0.00 0.00 46.39 2.85
2578 2967 1.066454 AGCACGCAAGGTTTTGGTTAC 59.934 47.619 0.00 0.00 46.39 2.50
2579 2968 1.066303 CAGCACGCAAGGTTTTGGTTA 59.934 47.619 0.00 0.00 46.39 2.85
2580 2969 0.179113 CAGCACGCAAGGTTTTGGTT 60.179 50.000 0.00 0.00 46.39 3.67
2581 2970 1.319614 ACAGCACGCAAGGTTTTGGT 61.320 50.000 0.00 0.00 46.39 3.67
2582 2971 0.665835 TACAGCACGCAAGGTTTTGG 59.334 50.000 0.00 0.00 46.39 3.28
2583 2972 1.333619 AGTACAGCACGCAAGGTTTTG 59.666 47.619 0.00 0.00 46.39 2.44
2584 2973 1.333619 CAGTACAGCACGCAAGGTTTT 59.666 47.619 0.00 0.00 46.39 2.43
2585 2974 0.944386 CAGTACAGCACGCAAGGTTT 59.056 50.000 0.00 0.00 46.39 3.27
2586 2975 1.507141 GCAGTACAGCACGCAAGGTT 61.507 55.000 5.23 0.00 46.39 3.50
2587 2976 1.961277 GCAGTACAGCACGCAAGGT 60.961 57.895 5.23 0.00 46.39 3.50
2588 2977 2.680913 GGCAGTACAGCACGCAAGG 61.681 63.158 12.66 0.00 46.39 3.61
2590 2979 2.110006 TGGCAGTACAGCACGCAA 59.890 55.556 12.66 0.00 35.83 4.85
2591 2980 2.664851 GTGGCAGTACAGCACGCA 60.665 61.111 12.66 0.00 35.83 5.24
2592 2981 3.423154 GGTGGCAGTACAGCACGC 61.423 66.667 12.66 7.94 38.65 5.34
2593 2982 2.029288 CAGGTGGCAGTACAGCACG 61.029 63.158 12.66 0.00 41.12 5.34
2594 2983 2.328099 GCAGGTGGCAGTACAGCAC 61.328 63.158 12.66 8.17 43.97 4.40
2595 2984 2.032528 GCAGGTGGCAGTACAGCA 59.967 61.111 12.66 0.00 43.97 4.41
2596 2985 3.551496 TGGCAGGTGGCAGTACAGC 62.551 63.158 1.39 0.82 46.12 4.40
2597 2986 2.749682 TGGCAGGTGGCAGTACAG 59.250 61.111 1.39 0.00 46.12 2.74
2808 3197 4.866508 TCACCGATTATAAGCTAGTGGG 57.133 45.455 16.13 5.74 0.00 4.61
2821 3210 5.515797 TCGAGATTCATACTTCACCGATT 57.484 39.130 0.00 0.00 0.00 3.34
2866 3255 4.322801 GGTCGGATCATATTAAGGTGGAGG 60.323 50.000 0.00 0.00 0.00 4.30
2874 3263 7.990886 AGTTTAAGCTTGGTCGGATCATATTAA 59.009 33.333 9.86 0.00 0.00 1.40
2914 3303 9.804758 GCAGTTCTTACAGTATAAAGATGTACT 57.195 33.333 0.00 0.00 34.18 2.73
2915 3304 9.582431 TGCAGTTCTTACAGTATAAAGATGTAC 57.418 33.333 0.00 0.00 32.05 2.90
2921 3310 7.182761 GTGCATGCAGTTCTTACAGTATAAAG 58.817 38.462 23.41 0.00 0.00 1.85
2947 3336 9.956720 GAACTCCACATATATTTCTCCAAATTG 57.043 33.333 0.00 0.00 33.95 2.32
2977 3366 1.202188 GGCTTGAAATTAGACGGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
2980 3369 3.897819 CGGCTTGAAATTAGACGGC 57.102 52.632 0.00 0.00 40.43 5.68
3030 3419 1.639298 GAGCAAGTCATGGTGCCGAC 61.639 60.000 11.72 0.00 41.88 4.79
3177 3571 4.095782 TGTTTTAACTCCTGTTGTGCTGTC 59.904 41.667 0.00 0.00 37.59 3.51
3184 3578 5.124776 TGTTGGTCTGTTTTAACTCCTGTTG 59.875 40.000 0.00 0.00 37.59 3.33
3185 3579 5.258051 TGTTGGTCTGTTTTAACTCCTGTT 58.742 37.500 0.00 0.00 39.98 3.16
3190 3584 5.365619 TCCTCTGTTGGTCTGTTTTAACTC 58.634 41.667 0.00 0.00 0.00 3.01
3242 3636 3.005684 TCCACTGCCTTGCACATTTTTAG 59.994 43.478 0.00 0.00 33.79 1.85
3250 3650 1.673665 CCTCTCCACTGCCTTGCAC 60.674 63.158 0.00 0.00 33.79 4.57
3253 3653 1.561643 TAGTCCTCTCCACTGCCTTG 58.438 55.000 0.00 0.00 0.00 3.61
3256 3656 0.537653 GGTTAGTCCTCTCCACTGCC 59.462 60.000 0.00 0.00 0.00 4.85
3396 3798 2.553028 GGCAACTTCTTCAGTGGATCCA 60.553 50.000 11.44 11.44 35.12 3.41
3571 3976 6.834168 TTTATGAAGAAATTCCCAGTGGAC 57.166 37.500 11.95 0.00 41.57 4.02
3591 3996 9.399797 TCGACTCTACAGGTTTGATAGTATTTA 57.600 33.333 0.00 0.00 0.00 1.40
3594 3999 6.016943 GCTCGACTCTACAGGTTTGATAGTAT 60.017 42.308 0.00 0.00 0.00 2.12
3758 4220 6.042093 TGAGCAAATCTGGGAGGTACTTATAG 59.958 42.308 0.00 0.00 41.55 1.31
3787 4249 3.284617 TCGACCCTCTCGATGAATACAA 58.715 45.455 0.00 0.00 46.75 2.41
3798 4260 1.646189 GAAGCAACATCGACCCTCTC 58.354 55.000 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.