Multiple sequence alignment - TraesCS1B01G320100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G320100 chr1B 100.000 2483 0 0 1 2483 544490959 544493441 0.000000e+00 4586.0
1 TraesCS1B01G320100 chr1D 95.383 1018 25 6 619 1624 404655240 404656247 0.000000e+00 1600.0
2 TraesCS1B01G320100 chr1D 92.288 778 45 11 1707 2481 404656246 404657011 0.000000e+00 1090.0
3 TraesCS1B01G320100 chr1D 92.105 152 8 3 470 620 404655066 404655214 6.960000e-51 211.0
4 TraesCS1B01G320100 chr1D 100.000 39 0 0 1851 1889 404656428 404656390 3.430000e-09 73.1
5 TraesCS1B01G320100 chr1A 94.892 1018 28 6 618 1624 500285409 500286413 0.000000e+00 1570.0
6 TraesCS1B01G320100 chr1A 90.966 797 40 18 1707 2483 500286412 500287196 0.000000e+00 1044.0
7 TraesCS1B01G320100 chr1A 88.889 423 24 15 216 620 500284967 500285384 1.330000e-137 499.0
8 TraesCS1B01G320100 chr3A 98.925 93 1 0 1618 1710 310784276 310784184 1.530000e-37 167.0
9 TraesCS1B01G320100 chr3A 94.231 104 2 4 1615 1717 729669422 729669322 3.310000e-34 156.0
10 TraesCS1B01G320100 chr3A 88.696 115 13 0 1106 1220 580608700 580608814 9.260000e-30 141.0
11 TraesCS1B01G320100 chr6A 96.875 96 3 0 1614 1709 560694299 560694394 7.110000e-36 161.0
12 TraesCS1B01G320100 chr4B 96.842 95 3 0 1617 1711 631442204 631442110 2.560000e-35 159.0
13 TraesCS1B01G320100 chr3B 95.000 100 3 1 1623 1722 23095266 23095363 3.310000e-34 156.0
14 TraesCS1B01G320100 chr3B 94.175 103 3 2 1607 1708 512513599 512513699 1.190000e-33 154.0
15 TraesCS1B01G320100 chr3B 86.957 115 15 0 1106 1220 577490378 577490492 2.000000e-26 130.0
16 TraesCS1B01G320100 chr2B 94.231 104 3 3 1623 1726 77856148 77856048 3.310000e-34 156.0
17 TraesCS1B01G320100 chr2A 93.458 107 3 4 1608 1713 622029574 622029677 3.310000e-34 156.0
18 TraesCS1B01G320100 chr4A 91.071 112 6 3 1622 1731 737382336 737382227 5.530000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G320100 chr1B 544490959 544493441 2482 False 4586.000000 4586 100.000000 1 2483 1 chr1B.!!$F1 2482
1 TraesCS1B01G320100 chr1D 404655066 404657011 1945 False 967.000000 1600 93.258667 470 2481 3 chr1D.!!$F1 2011
2 TraesCS1B01G320100 chr1A 500284967 500287196 2229 False 1037.666667 1570 91.582333 216 2483 3 chr1A.!!$F1 2267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.03759 ACACACACACACACAACCCT 59.962 50.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 1746 0.115745 ACCTACTCCCTCCGTTCCAA 59.884 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.604875 TTTTAAAGACGCGGATCCTCT 57.395 42.857 12.47 2.90 0.00 3.69
34 35 2.865343 TTAAAGACGCGGATCCTCTC 57.135 50.000 12.47 1.82 0.00 3.20
35 36 2.054232 TAAAGACGCGGATCCTCTCT 57.946 50.000 12.47 4.18 0.00 3.10
36 37 0.741915 AAAGACGCGGATCCTCTCTC 59.258 55.000 12.47 0.00 0.00 3.20
37 38 0.106918 AAGACGCGGATCCTCTCTCT 60.107 55.000 12.47 1.64 0.00 3.10
38 39 0.534203 AGACGCGGATCCTCTCTCTC 60.534 60.000 12.47 0.00 0.00 3.20
39 40 0.534203 GACGCGGATCCTCTCTCTCT 60.534 60.000 12.47 0.00 0.00 3.10
40 41 0.534203 ACGCGGATCCTCTCTCTCTC 60.534 60.000 12.47 0.00 0.00 3.20
41 42 0.250295 CGCGGATCCTCTCTCTCTCT 60.250 60.000 10.75 0.00 0.00 3.10
42 43 1.523758 GCGGATCCTCTCTCTCTCTC 58.476 60.000 10.75 0.00 0.00 3.20
43 44 1.072331 GCGGATCCTCTCTCTCTCTCT 59.928 57.143 10.75 0.00 0.00 3.10
44 45 2.872038 GCGGATCCTCTCTCTCTCTCTC 60.872 59.091 10.75 0.00 0.00 3.20
45 46 2.634940 CGGATCCTCTCTCTCTCTCTCT 59.365 54.545 10.75 0.00 0.00 3.10
46 47 3.306364 CGGATCCTCTCTCTCTCTCTCTC 60.306 56.522 10.75 0.00 0.00 3.20
47 48 3.648067 GGATCCTCTCTCTCTCTCTCTCA 59.352 52.174 3.84 0.00 0.00 3.27
48 49 4.503991 GGATCCTCTCTCTCTCTCTCTCAC 60.504 54.167 3.84 0.00 0.00 3.51
49 50 3.449918 TCCTCTCTCTCTCTCTCTCACA 58.550 50.000 0.00 0.00 0.00 3.58
50 51 3.197766 TCCTCTCTCTCTCTCTCTCACAC 59.802 52.174 0.00 0.00 0.00 3.82
51 52 3.055167 CCTCTCTCTCTCTCTCTCACACA 60.055 52.174 0.00 0.00 0.00 3.72
52 53 3.935203 CTCTCTCTCTCTCTCTCACACAC 59.065 52.174 0.00 0.00 0.00 3.82
53 54 3.326297 TCTCTCTCTCTCTCTCACACACA 59.674 47.826 0.00 0.00 0.00 3.72
54 55 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
55 56 3.145286 CTCTCTCTCTCTCACACACACA 58.855 50.000 0.00 0.00 0.00 3.72
56 57 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
57 58 2.620585 CTCTCTCTCTCACACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
58 59 2.359214 TCTCTCTCTCACACACACACAC 59.641 50.000 0.00 0.00 0.00 3.82
59 60 2.099405 TCTCTCTCACACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
60 61 2.159240 TCTCTCTCACACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
61 62 1.548269 TCTCTCACACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
62 63 1.660607 CTCTCACACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
63 64 1.001406 TCTCACACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
64 65 1.128507 CTCACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
65 66 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
66 67 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
67 68 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
68 69 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
69 70 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
70 71 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
71 72 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
72 73 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
73 74 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
74 75 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
75 76 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
76 77 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
77 78 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
78 79 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
79 80 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
80 81 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
81 82 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
82 83 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
83 84 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
84 85 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
85 86 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
86 87 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
87 88 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
88 89 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
89 90 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
90 91 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
91 92 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
92 93 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
93 94 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
94 95 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
95 96 1.265635 ACACACACACACACACACAAC 59.734 47.619 0.00 0.00 0.00 3.32
96 97 0.878416 ACACACACACACACACAACC 59.122 50.000 0.00 0.00 0.00 3.77
97 98 0.170116 CACACACACACACACAACCC 59.830 55.000 0.00 0.00 0.00 4.11
98 99 0.037590 ACACACACACACACAACCCT 59.962 50.000 0.00 0.00 0.00 4.34
99 100 1.279558 ACACACACACACACAACCCTA 59.720 47.619 0.00 0.00 0.00 3.53
100 101 1.668751 CACACACACACACAACCCTAC 59.331 52.381 0.00 0.00 0.00 3.18
101 102 1.305201 CACACACACACAACCCTACC 58.695 55.000 0.00 0.00 0.00 3.18
102 103 0.181824 ACACACACACAACCCTACCC 59.818 55.000 0.00 0.00 0.00 3.69
103 104 0.472471 CACACACACAACCCTACCCT 59.528 55.000 0.00 0.00 0.00 4.34
104 105 1.695242 CACACACACAACCCTACCCTA 59.305 52.381 0.00 0.00 0.00 3.53
105 106 2.304761 CACACACACAACCCTACCCTAT 59.695 50.000 0.00 0.00 0.00 2.57
106 107 2.304761 ACACACACAACCCTACCCTATG 59.695 50.000 0.00 0.00 0.00 2.23
107 108 2.569853 CACACACAACCCTACCCTATGA 59.430 50.000 0.00 0.00 0.00 2.15
108 109 2.838202 ACACACAACCCTACCCTATGAG 59.162 50.000 0.00 0.00 0.00 2.90
109 110 1.838077 ACACAACCCTACCCTATGAGC 59.162 52.381 0.00 0.00 0.00 4.26
110 111 1.837439 CACAACCCTACCCTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
111 112 2.238646 CACAACCCTACCCTATGAGCAA 59.761 50.000 0.00 0.00 0.00 3.91
112 113 2.238898 ACAACCCTACCCTATGAGCAAC 59.761 50.000 0.00 0.00 0.00 4.17
113 114 2.505819 CAACCCTACCCTATGAGCAACT 59.494 50.000 0.00 0.00 0.00 3.16
114 115 2.846950 ACCCTACCCTATGAGCAACTT 58.153 47.619 0.00 0.00 0.00 2.66
115 116 2.772515 ACCCTACCCTATGAGCAACTTC 59.227 50.000 0.00 0.00 0.00 3.01
116 117 2.224066 CCCTACCCTATGAGCAACTTCG 60.224 54.545 0.00 0.00 0.00 3.79
117 118 2.693591 CCTACCCTATGAGCAACTTCGA 59.306 50.000 0.00 0.00 0.00 3.71
118 119 2.969628 ACCCTATGAGCAACTTCGAG 57.030 50.000 0.00 0.00 0.00 4.04
119 120 2.457598 ACCCTATGAGCAACTTCGAGA 58.542 47.619 0.00 0.00 0.00 4.04
120 121 2.832129 ACCCTATGAGCAACTTCGAGAA 59.168 45.455 0.00 0.00 0.00 2.87
121 122 3.260884 ACCCTATGAGCAACTTCGAGAAA 59.739 43.478 0.00 0.00 0.00 2.52
122 123 3.619038 CCCTATGAGCAACTTCGAGAAAC 59.381 47.826 0.00 0.00 0.00 2.78
123 124 3.619038 CCTATGAGCAACTTCGAGAAACC 59.381 47.826 0.00 0.00 0.00 3.27
124 125 1.497991 TGAGCAACTTCGAGAAACCG 58.502 50.000 0.00 0.00 0.00 4.44
125 126 1.067974 TGAGCAACTTCGAGAAACCGA 59.932 47.619 0.00 0.00 36.70 4.69
126 127 1.721926 GAGCAACTTCGAGAAACCGAG 59.278 52.381 0.00 0.00 39.90 4.63
127 128 0.164002 GCAACTTCGAGAAACCGAGC 59.836 55.000 0.00 0.00 39.90 5.03
128 129 0.790814 CAACTTCGAGAAACCGAGCC 59.209 55.000 0.00 0.00 39.90 4.70
129 130 0.391597 AACTTCGAGAAACCGAGCCA 59.608 50.000 0.00 0.00 39.90 4.75
130 131 0.391597 ACTTCGAGAAACCGAGCCAA 59.608 50.000 0.00 0.00 39.90 4.52
131 132 0.790814 CTTCGAGAAACCGAGCCAAC 59.209 55.000 0.00 0.00 39.90 3.77
132 133 0.105224 TTCGAGAAACCGAGCCAACA 59.895 50.000 0.00 0.00 39.90 3.33
133 134 0.320374 TCGAGAAACCGAGCCAACAT 59.680 50.000 0.00 0.00 34.19 2.71
134 135 1.546923 TCGAGAAACCGAGCCAACATA 59.453 47.619 0.00 0.00 34.19 2.29
135 136 2.167693 TCGAGAAACCGAGCCAACATAT 59.832 45.455 0.00 0.00 34.19 1.78
136 137 2.540101 CGAGAAACCGAGCCAACATATC 59.460 50.000 0.00 0.00 0.00 1.63
137 138 3.738281 CGAGAAACCGAGCCAACATATCT 60.738 47.826 0.00 0.00 0.00 1.98
138 139 3.798202 AGAAACCGAGCCAACATATCTC 58.202 45.455 0.00 0.00 0.00 2.75
139 140 2.225068 AACCGAGCCAACATATCTCG 57.775 50.000 4.13 4.13 46.44 4.04
141 142 3.967886 CGAGCCAACATATCTCGGT 57.032 52.632 3.26 0.00 44.06 4.69
143 144 2.662700 CGAGCCAACATATCTCGGTAC 58.337 52.381 3.26 0.00 44.06 3.34
144 145 2.034179 CGAGCCAACATATCTCGGTACA 59.966 50.000 0.00 0.00 44.06 2.90
145 146 3.490249 CGAGCCAACATATCTCGGTACAA 60.490 47.826 0.00 0.00 44.06 2.41
146 147 4.051922 GAGCCAACATATCTCGGTACAAG 58.948 47.826 0.00 0.00 0.00 3.16
147 148 2.544267 GCCAACATATCTCGGTACAAGC 59.456 50.000 0.00 0.00 0.00 4.01
148 149 3.792401 CCAACATATCTCGGTACAAGCA 58.208 45.455 0.00 0.00 0.00 3.91
149 150 3.555956 CCAACATATCTCGGTACAAGCAC 59.444 47.826 0.00 0.00 0.00 4.40
150 151 3.454371 ACATATCTCGGTACAAGCACC 57.546 47.619 0.00 0.00 35.04 5.01
151 152 3.031736 ACATATCTCGGTACAAGCACCT 58.968 45.455 0.00 0.00 36.35 4.00
152 153 3.068307 ACATATCTCGGTACAAGCACCTC 59.932 47.826 0.00 0.00 36.35 3.85
153 154 0.456221 ATCTCGGTACAAGCACCTCG 59.544 55.000 0.00 0.00 36.35 4.63
154 155 0.892358 TCTCGGTACAAGCACCTCGT 60.892 55.000 0.00 0.00 36.35 4.18
155 156 0.806868 CTCGGTACAAGCACCTCGTA 59.193 55.000 0.00 0.00 36.35 3.43
156 157 0.806868 TCGGTACAAGCACCTCGTAG 59.193 55.000 0.00 0.00 36.35 3.51
157 158 0.524862 CGGTACAAGCACCTCGTAGT 59.475 55.000 0.00 0.00 36.35 2.73
158 159 1.467035 CGGTACAAGCACCTCGTAGTC 60.467 57.143 0.00 0.00 36.35 2.59
159 160 1.467035 GGTACAAGCACCTCGTAGTCG 60.467 57.143 0.00 0.00 35.55 4.18
160 161 1.466167 GTACAAGCACCTCGTAGTCGA 59.534 52.381 0.00 0.00 44.12 4.20
161 162 0.240411 ACAAGCACCTCGTAGTCGAC 59.760 55.000 7.70 7.70 41.35 4.20
170 171 2.585247 GTAGTCGACGGGCATGCC 60.585 66.667 29.47 29.47 0.00 4.40
171 172 3.071837 TAGTCGACGGGCATGCCA 61.072 61.111 36.56 14.68 37.98 4.92
172 173 2.431454 TAGTCGACGGGCATGCCAT 61.431 57.895 36.56 24.80 37.98 4.40
173 174 1.110518 TAGTCGACGGGCATGCCATA 61.111 55.000 36.56 14.67 37.98 2.74
174 175 1.522806 GTCGACGGGCATGCCATAA 60.523 57.895 36.56 15.03 37.98 1.90
175 176 1.092921 GTCGACGGGCATGCCATAAA 61.093 55.000 36.56 15.76 37.98 1.40
176 177 0.393132 TCGACGGGCATGCCATAAAA 60.393 50.000 36.56 16.86 37.98 1.52
177 178 0.667993 CGACGGGCATGCCATAAAAT 59.332 50.000 36.56 15.43 37.98 1.82
178 179 1.066908 CGACGGGCATGCCATAAAATT 59.933 47.619 36.56 12.83 37.98 1.82
179 180 2.472816 GACGGGCATGCCATAAAATTG 58.527 47.619 36.56 17.19 37.98 2.32
180 181 2.100584 GACGGGCATGCCATAAAATTGA 59.899 45.455 36.56 0.00 37.98 2.57
181 182 2.499289 ACGGGCATGCCATAAAATTGAA 59.501 40.909 36.56 0.00 37.98 2.69
182 183 3.055530 ACGGGCATGCCATAAAATTGAAA 60.056 39.130 36.56 0.00 37.98 2.69
183 184 3.556775 CGGGCATGCCATAAAATTGAAAG 59.443 43.478 36.56 8.18 37.98 2.62
184 185 4.680172 CGGGCATGCCATAAAATTGAAAGA 60.680 41.667 36.56 0.00 37.98 2.52
185 186 5.184711 GGGCATGCCATAAAATTGAAAGAA 58.815 37.500 36.56 0.00 37.98 2.52
186 187 5.824097 GGGCATGCCATAAAATTGAAAGAAT 59.176 36.000 36.56 0.00 37.98 2.40
187 188 6.991531 GGGCATGCCATAAAATTGAAAGAATA 59.008 34.615 36.56 0.00 37.98 1.75
188 189 7.172019 GGGCATGCCATAAAATTGAAAGAATAG 59.828 37.037 36.56 0.00 37.98 1.73
189 190 7.307573 GGCATGCCATAAAATTGAAAGAATAGC 60.308 37.037 32.08 0.00 35.81 2.97
190 191 7.568134 GCATGCCATAAAATTGAAAGAATAGCG 60.568 37.037 6.36 0.00 0.00 4.26
191 192 5.748152 TGCCATAAAATTGAAAGAATAGCGC 59.252 36.000 0.00 0.00 0.00 5.92
192 193 5.175673 GCCATAAAATTGAAAGAATAGCGCC 59.824 40.000 2.29 0.00 0.00 6.53
193 194 5.399301 CCATAAAATTGAAAGAATAGCGCCG 59.601 40.000 2.29 0.00 0.00 6.46
194 195 3.420839 AAATTGAAAGAATAGCGCCGG 57.579 42.857 2.29 0.00 0.00 6.13
195 196 2.325583 ATTGAAAGAATAGCGCCGGA 57.674 45.000 5.05 0.00 0.00 5.14
196 197 1.651987 TTGAAAGAATAGCGCCGGAG 58.348 50.000 5.05 1.55 0.00 4.63
197 198 0.821517 TGAAAGAATAGCGCCGGAGA 59.178 50.000 10.31 0.00 0.00 3.71
198 199 1.202417 TGAAAGAATAGCGCCGGAGAG 60.202 52.381 10.31 0.00 0.00 3.20
199 200 1.067212 GAAAGAATAGCGCCGGAGAGA 59.933 52.381 10.31 0.00 0.00 3.10
200 201 0.386113 AAGAATAGCGCCGGAGAGAC 59.614 55.000 10.31 0.00 0.00 3.36
201 202 0.466555 AGAATAGCGCCGGAGAGACT 60.467 55.000 10.31 0.00 0.00 3.24
202 203 1.202782 AGAATAGCGCCGGAGAGACTA 60.203 52.381 10.31 0.88 0.00 2.59
203 204 1.607628 GAATAGCGCCGGAGAGACTAA 59.392 52.381 10.31 0.00 0.00 2.24
204 205 1.688772 ATAGCGCCGGAGAGACTAAA 58.311 50.000 10.31 0.00 0.00 1.85
205 206 1.466856 TAGCGCCGGAGAGACTAAAA 58.533 50.000 10.31 0.00 0.00 1.52
206 207 0.824759 AGCGCCGGAGAGACTAAAAT 59.175 50.000 10.31 0.00 0.00 1.82
207 208 2.029623 AGCGCCGGAGAGACTAAAATA 58.970 47.619 10.31 0.00 0.00 1.40
208 209 2.429610 AGCGCCGGAGAGACTAAAATAA 59.570 45.455 10.31 0.00 0.00 1.40
209 210 3.069729 AGCGCCGGAGAGACTAAAATAAT 59.930 43.478 10.31 0.00 0.00 1.28
210 211 3.808174 GCGCCGGAGAGACTAAAATAATT 59.192 43.478 10.31 0.00 0.00 1.40
211 212 4.084485 GCGCCGGAGAGACTAAAATAATTC 60.084 45.833 10.31 0.00 0.00 2.17
212 213 4.448060 CGCCGGAGAGACTAAAATAATTCC 59.552 45.833 5.05 0.00 0.00 3.01
213 214 5.612351 GCCGGAGAGACTAAAATAATTCCT 58.388 41.667 5.05 0.00 0.00 3.36
214 215 5.467063 GCCGGAGAGACTAAAATAATTCCTG 59.533 44.000 5.05 0.00 0.00 3.86
240 241 5.779806 ATATTTGAGTACACGTGTCAAGC 57.220 39.130 27.16 13.82 32.00 4.01
247 248 1.267121 ACACGTGTCAAGCCTAGGAT 58.733 50.000 17.22 1.88 0.00 3.24
251 252 2.301870 ACGTGTCAAGCCTAGGATTTGA 59.698 45.455 14.75 17.86 0.00 2.69
258 259 1.913419 AGCCTAGGATTTGAAACCGGA 59.087 47.619 14.75 0.00 0.00 5.14
259 260 2.509964 AGCCTAGGATTTGAAACCGGAT 59.490 45.455 14.75 0.00 0.00 4.18
278 279 5.450412 CCGGATGGGTTAATTTCATCACAAG 60.450 44.000 0.00 5.86 39.07 3.16
286 287 8.966868 GGGTTAATTTCATCACAAGGAATCTAA 58.033 33.333 0.00 0.00 0.00 2.10
290 291 6.500684 TTTCATCACAAGGAATCTAACTGC 57.499 37.500 0.00 0.00 0.00 4.40
308 310 9.084164 TCTAACTGCTTAAGCTAACTTAATTCG 57.916 33.333 26.90 0.00 45.12 3.34
320 322 6.018669 GCTAACTTAATTCGCACTAGAAGCAT 60.019 38.462 0.00 0.00 33.19 3.79
354 356 5.452636 GCCAATCTTCTTGTAGCTAGCTAGT 60.453 44.000 24.78 11.13 0.00 2.57
355 357 6.239064 GCCAATCTTCTTGTAGCTAGCTAGTA 60.239 42.308 24.78 13.96 0.00 1.82
356 358 7.142680 CCAATCTTCTTGTAGCTAGCTAGTAC 58.857 42.308 24.78 16.30 0.00 2.73
425 435 7.647907 TCTTGTAAACTTTGACTTATCGGTC 57.352 36.000 0.00 0.00 36.81 4.79
433 443 7.521509 ACTTTGACTTATCGGTCGAAAATAG 57.478 36.000 0.00 0.00 38.61 1.73
437 447 4.957296 ACTTATCGGTCGAAAATAGGCAT 58.043 39.130 0.00 0.00 0.00 4.40
438 448 4.989168 ACTTATCGGTCGAAAATAGGCATC 59.011 41.667 0.00 0.00 0.00 3.91
443 453 3.312421 CGGTCGAAAATAGGCATCAACAT 59.688 43.478 0.00 0.00 0.00 2.71
449 459 5.630680 CGAAAATAGGCATCAACATATTGGC 59.369 40.000 0.00 0.00 36.39 4.52
538 551 5.948992 AAAGGTAGTCAAAGCAAGATGAC 57.051 39.130 0.00 0.00 44.92 3.06
546 565 0.670546 AAGCAAGATGACGGGTCGTG 60.671 55.000 0.00 0.00 41.37 4.35
624 671 3.541996 AGACACATAACGGCATCATCA 57.458 42.857 0.00 0.00 0.00 3.07
641 688 4.021229 TCATCACTGGGTAGACGTAACAT 58.979 43.478 0.00 0.00 0.00 2.71
714 761 0.393077 CACACCGTCCCTTTCTCACT 59.607 55.000 0.00 0.00 0.00 3.41
814 869 1.003580 TCCACTGTCCTTTCATGGCTC 59.996 52.381 0.00 0.00 0.00 4.70
1041 1096 1.675310 CAAGGGCATTGCTCACCGA 60.675 57.895 11.86 0.00 30.65 4.69
1155 1210 4.295119 GTGCGGGTGTCGACCAGT 62.295 66.667 14.12 0.00 45.25 4.00
1229 1284 3.788766 CAAGTACACCGGCAGCGC 61.789 66.667 0.00 0.00 0.00 5.92
1491 1546 1.751437 ACGAGTGGTGATCGATCTGA 58.249 50.000 25.02 4.07 42.76 3.27
1497 1552 2.625314 GTGGTGATCGATCTGAGATCCA 59.375 50.000 25.02 18.38 42.73 3.41
1498 1553 3.257873 GTGGTGATCGATCTGAGATCCAT 59.742 47.826 25.02 9.53 42.73 3.41
1499 1554 3.509184 TGGTGATCGATCTGAGATCCATC 59.491 47.826 25.02 19.14 42.73 3.51
1500 1555 3.763360 GGTGATCGATCTGAGATCCATCT 59.237 47.826 23.93 6.14 42.73 2.90
1536 1591 4.729918 AGCCCCCGCAGCAGAAAG 62.730 66.667 0.00 0.00 37.52 2.62
1547 1602 4.151335 CCGCAGCAGAAAGATGTATGTATC 59.849 45.833 0.00 0.00 35.63 2.24
1611 1666 1.332377 GCATGTGCGTTCGATTCTAGC 60.332 52.381 0.00 0.00 0.00 3.42
1615 1670 0.173481 TGCGTTCGATTCTAGCAGCT 59.827 50.000 0.00 0.00 33.57 4.24
1616 1671 1.404035 TGCGTTCGATTCTAGCAGCTA 59.596 47.619 1.13 1.13 33.57 3.32
1617 1672 2.047769 GCGTTCGATTCTAGCAGCTAG 58.952 52.381 21.97 21.97 35.57 3.42
1621 1676 4.223659 GTTCGATTCTAGCAGCTAGTAGC 58.776 47.826 25.79 19.32 42.84 3.58
1632 1687 1.525941 GCTAGTAGCTACTCCCTCCG 58.474 60.000 29.28 12.77 38.45 4.63
1633 1688 1.202794 GCTAGTAGCTACTCCCTCCGT 60.203 57.143 29.28 6.46 38.45 4.69
1634 1689 2.749132 GCTAGTAGCTACTCCCTCCGTT 60.749 54.545 29.28 5.71 38.45 4.44
1635 1690 2.055684 AGTAGCTACTCCCTCCGTTC 57.944 55.000 20.95 0.00 0.00 3.95
1636 1691 1.031235 GTAGCTACTCCCTCCGTTCC 58.969 60.000 16.88 0.00 0.00 3.62
1637 1692 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
1638 1693 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
1639 1694 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
1640 1695 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
1641 1696 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
1642 1697 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
1643 1698 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1644 1699 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1645 1700 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1646 1701 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1647 1702 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1648 1703 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1649 1704 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1650 1705 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1651 1706 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1652 1707 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1653 1708 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1654 1709 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1655 1710 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1656 1711 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1657 1712 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1658 1713 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1659 1714 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1660 1715 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1661 1716 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1666 1721 7.768807 AGATGACTCAACTTTGTACTAGAGT 57.231 36.000 0.00 0.00 38.89 3.24
1667 1722 8.184304 AGATGACTCAACTTTGTACTAGAGTT 57.816 34.615 0.00 0.00 36.56 3.01
1668 1723 9.298250 AGATGACTCAACTTTGTACTAGAGTTA 57.702 33.333 0.00 0.00 36.56 2.24
1669 1724 9.562583 GATGACTCAACTTTGTACTAGAGTTAG 57.437 37.037 0.00 8.69 36.56 2.34
1670 1725 8.461249 TGACTCAACTTTGTACTAGAGTTAGT 57.539 34.615 0.00 10.72 42.66 2.24
1671 1726 9.565090 TGACTCAACTTTGTACTAGAGTTAGTA 57.435 33.333 0.00 0.00 40.55 1.82
1684 1739 8.461249 ACTAGAGTTAGTACAAAGTTGAGTCA 57.539 34.615 0.00 0.00 38.35 3.41
1685 1740 9.080097 ACTAGAGTTAGTACAAAGTTGAGTCAT 57.920 33.333 0.00 0.00 38.35 3.06
1686 1741 9.562583 CTAGAGTTAGTACAAAGTTGAGTCATC 57.437 37.037 0.00 0.00 0.00 2.92
1687 1742 8.184304 AGAGTTAGTACAAAGTTGAGTCATCT 57.816 34.615 0.00 0.00 0.00 2.90
1688 1743 9.298250 AGAGTTAGTACAAAGTTGAGTCATCTA 57.702 33.333 4.14 0.00 0.00 1.98
1694 1749 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1695 1750 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1696 1751 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1697 1752 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1698 1753 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1699 1754 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1700 1755 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1701 1756 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1702 1757 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1703 1758 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1704 1759 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1705 1760 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1828 1888 5.163353 TGTGAGTGAGAAATGTGTCCTGTTA 60.163 40.000 0.00 0.00 0.00 2.41
1834 1894 7.721399 AGTGAGAAATGTGTCCTGTTAGATTTT 59.279 33.333 0.00 0.00 0.00 1.82
1841 1901 4.583073 GTGTCCTGTTAGATTTTGTGGGTT 59.417 41.667 0.00 0.00 0.00 4.11
1842 1902 4.582656 TGTCCTGTTAGATTTTGTGGGTTG 59.417 41.667 0.00 0.00 0.00 3.77
1844 1904 3.306019 CCTGTTAGATTTTGTGGGTTGCC 60.306 47.826 0.00 0.00 0.00 4.52
1846 1906 3.706594 TGTTAGATTTTGTGGGTTGCCAA 59.293 39.130 0.00 0.00 0.00 4.52
1860 1929 4.863152 GTTGCCAACCATTATTTGCATC 57.137 40.909 0.00 0.00 0.00 3.91
1861 1930 3.540314 TGCCAACCATTATTTGCATCC 57.460 42.857 0.00 0.00 0.00 3.51
1862 1931 2.836372 TGCCAACCATTATTTGCATCCA 59.164 40.909 0.00 0.00 0.00 3.41
1863 1932 3.197265 GCCAACCATTATTTGCATCCAC 58.803 45.455 0.00 0.00 0.00 4.02
1864 1933 3.369261 GCCAACCATTATTTGCATCCACA 60.369 43.478 0.00 0.00 0.00 4.17
1865 1934 4.683942 GCCAACCATTATTTGCATCCACAT 60.684 41.667 0.00 0.00 0.00 3.21
1866 1935 5.430007 CCAACCATTATTTGCATCCACATT 58.570 37.500 0.00 0.00 0.00 2.71
1867 1936 5.294799 CCAACCATTATTTGCATCCACATTG 59.705 40.000 0.00 0.00 0.00 2.82
1868 1937 4.444536 ACCATTATTTGCATCCACATTGC 58.555 39.130 0.00 0.00 40.55 3.56
1875 1944 3.897141 TGCATCCACATTGCAAATCAT 57.103 38.095 1.71 0.00 46.48 2.45
1876 1945 3.787785 TGCATCCACATTGCAAATCATC 58.212 40.909 1.71 0.00 46.48 2.92
1877 1946 3.195825 TGCATCCACATTGCAAATCATCA 59.804 39.130 1.71 0.00 46.48 3.07
1878 1947 4.141824 TGCATCCACATTGCAAATCATCAT 60.142 37.500 1.71 0.00 46.48 2.45
1879 1948 4.447724 GCATCCACATTGCAAATCATCATC 59.552 41.667 1.71 0.00 39.90 2.92
1880 1949 4.295857 TCCACATTGCAAATCATCATCG 57.704 40.909 1.71 0.00 0.00 3.84
1881 1950 3.946558 TCCACATTGCAAATCATCATCGA 59.053 39.130 1.71 0.00 0.00 3.59
1882 1951 4.581409 TCCACATTGCAAATCATCATCGAT 59.419 37.500 1.71 0.00 0.00 3.59
1883 1952 5.068067 TCCACATTGCAAATCATCATCGATT 59.932 36.000 1.71 0.00 37.20 3.34
1884 1953 6.262720 TCCACATTGCAAATCATCATCGATTA 59.737 34.615 1.71 0.00 34.49 1.75
1885 1954 6.919115 CCACATTGCAAATCATCATCGATTAA 59.081 34.615 1.71 0.00 34.49 1.40
1886 1955 7.114388 CCACATTGCAAATCATCATCGATTAAG 59.886 37.037 1.71 0.00 34.49 1.85
1887 1956 7.646526 CACATTGCAAATCATCATCGATTAAGT 59.353 33.333 1.71 0.00 34.49 2.24
1890 1959 9.888878 ATTGCAAATCATCATCGATTAAGTAAG 57.111 29.630 1.71 0.00 34.49 2.34
1910 1979 4.021102 AGTATTGGGGTGTTTGAGACAG 57.979 45.455 0.00 0.00 39.39 3.51
2188 2262 2.567049 GTGTCCCTCACTCCGACG 59.433 66.667 0.00 0.00 43.13 5.12
2230 2304 1.783031 GCCTCTCATGCCAAGATGCG 61.783 60.000 0.00 0.00 0.00 4.73
2231 2305 1.647629 CTCTCATGCCAAGATGCGC 59.352 57.895 0.00 0.00 0.00 6.09
2232 2306 1.078285 TCTCATGCCAAGATGCGCA 60.078 52.632 14.96 14.96 39.79 6.09
2233 2307 0.464916 TCTCATGCCAAGATGCGCAT 60.465 50.000 25.66 25.66 46.47 4.73
2274 2348 6.765989 TGGGATGCTAATAACATCAGTGTAAC 59.234 38.462 6.07 0.00 44.68 2.50
2380 2455 5.650266 AGAACCAAATAACCGCATTGACATA 59.350 36.000 0.00 0.00 0.00 2.29
2384 2459 5.920273 CCAAATAACCGCATTGACATATTCC 59.080 40.000 0.00 0.00 0.00 3.01
2444 2519 8.616377 GCATAGTGCAAATATTGATGATCATC 57.384 34.615 25.91 25.91 44.26 2.92
2445 2520 8.241367 GCATAGTGCAAATATTGATGATCATCA 58.759 33.333 30.27 30.27 44.26 3.07
2451 2526 9.509956 TGCAAATATTGATGATCATCATGTAGA 57.490 29.630 33.23 21.16 46.12 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.930848 GAGAGGATCCGCGTCTTTAAAAA 59.069 43.478 10.07 0.00 41.53 1.94
13 14 3.194968 AGAGAGGATCCGCGTCTTTAAAA 59.805 43.478 10.07 0.00 41.53 1.52
14 15 2.758979 AGAGAGGATCCGCGTCTTTAAA 59.241 45.455 10.07 0.00 41.53 1.52
15 16 2.358267 GAGAGAGGATCCGCGTCTTTAA 59.642 50.000 10.07 0.00 41.53 1.52
16 17 1.948145 GAGAGAGGATCCGCGTCTTTA 59.052 52.381 10.07 0.00 41.53 1.85
17 18 0.741915 GAGAGAGGATCCGCGTCTTT 59.258 55.000 10.07 0.97 41.53 2.52
18 19 0.106918 AGAGAGAGGATCCGCGTCTT 60.107 55.000 14.87 0.00 41.53 3.01
19 20 0.534203 GAGAGAGAGGATCCGCGTCT 60.534 60.000 18.90 18.90 43.97 4.18
20 21 0.534203 AGAGAGAGAGGATCCGCGTC 60.534 60.000 10.07 10.84 33.66 5.19
21 22 0.534203 GAGAGAGAGAGGATCCGCGT 60.534 60.000 10.07 1.20 33.66 6.01
22 23 0.250295 AGAGAGAGAGAGGATCCGCG 60.250 60.000 10.07 0.00 33.66 6.46
23 24 1.072331 AGAGAGAGAGAGAGGATCCGC 59.928 57.143 7.52 7.52 33.66 5.54
24 25 2.634940 AGAGAGAGAGAGAGAGGATCCG 59.365 54.545 5.98 0.00 33.66 4.18
25 26 3.648067 TGAGAGAGAGAGAGAGAGGATCC 59.352 52.174 2.48 2.48 33.66 3.36
26 27 4.101585 TGTGAGAGAGAGAGAGAGAGGATC 59.898 50.000 0.00 0.00 0.00 3.36
27 28 4.040047 TGTGAGAGAGAGAGAGAGAGGAT 58.960 47.826 0.00 0.00 0.00 3.24
28 29 3.197766 GTGTGAGAGAGAGAGAGAGAGGA 59.802 52.174 0.00 0.00 0.00 3.71
29 30 3.055167 TGTGTGAGAGAGAGAGAGAGAGG 60.055 52.174 0.00 0.00 0.00 3.69
30 31 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
31 32 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
32 33 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
33 34 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
34 35 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
35 36 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
36 37 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
37 38 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
38 39 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
39 40 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
40 41 2.196749 GTGTGTGTGTGTGTGAGAGAG 58.803 52.381 0.00 0.00 0.00 3.20
41 42 1.548269 TGTGTGTGTGTGTGTGAGAGA 59.452 47.619 0.00 0.00 0.00 3.10
42 43 1.660607 GTGTGTGTGTGTGTGTGAGAG 59.339 52.381 0.00 0.00 0.00 3.20
43 44 1.001406 TGTGTGTGTGTGTGTGTGAGA 59.999 47.619 0.00 0.00 0.00 3.27
44 45 1.128507 GTGTGTGTGTGTGTGTGTGAG 59.871 52.381 0.00 0.00 0.00 3.51
45 46 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
46 47 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
47 48 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
48 49 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
49 50 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
50 51 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
51 52 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
52 53 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
53 54 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
54 55 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
55 56 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
56 57 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
57 58 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
58 59 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
59 60 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
60 61 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
61 62 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
62 63 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
63 64 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
64 65 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
65 66 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
66 67 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
67 68 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
68 69 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
69 70 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
70 71 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
71 72 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
72 73 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
73 74 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
74 75 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
75 76 1.265635 GTTGTGTGTGTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
76 77 1.400888 GGTTGTGTGTGTGTGTGTGTG 60.401 52.381 0.00 0.00 0.00 3.82
77 78 0.878416 GGTTGTGTGTGTGTGTGTGT 59.122 50.000 0.00 0.00 0.00 3.72
78 79 0.170116 GGGTTGTGTGTGTGTGTGTG 59.830 55.000 0.00 0.00 0.00 3.82
79 80 0.037590 AGGGTTGTGTGTGTGTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
80 81 1.668751 GTAGGGTTGTGTGTGTGTGTG 59.331 52.381 0.00 0.00 0.00 3.82
81 82 1.407712 GGTAGGGTTGTGTGTGTGTGT 60.408 52.381 0.00 0.00 0.00 3.72
82 83 1.305201 GGTAGGGTTGTGTGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
83 84 0.181824 GGGTAGGGTTGTGTGTGTGT 59.818 55.000 0.00 0.00 0.00 3.72
84 85 0.472471 AGGGTAGGGTTGTGTGTGTG 59.528 55.000 0.00 0.00 0.00 3.82
85 86 2.106187 TAGGGTAGGGTTGTGTGTGT 57.894 50.000 0.00 0.00 0.00 3.72
86 87 2.569853 TCATAGGGTAGGGTTGTGTGTG 59.430 50.000 0.00 0.00 0.00 3.82
87 88 2.838202 CTCATAGGGTAGGGTTGTGTGT 59.162 50.000 0.00 0.00 0.00 3.72
88 89 2.420129 GCTCATAGGGTAGGGTTGTGTG 60.420 54.545 0.00 0.00 0.00 3.82
89 90 1.838077 GCTCATAGGGTAGGGTTGTGT 59.162 52.381 0.00 0.00 0.00 3.72
90 91 1.837439 TGCTCATAGGGTAGGGTTGTG 59.163 52.381 0.00 0.00 0.00 3.33
91 92 2.238898 GTTGCTCATAGGGTAGGGTTGT 59.761 50.000 0.00 0.00 0.00 3.32
92 93 2.505819 AGTTGCTCATAGGGTAGGGTTG 59.494 50.000 0.00 0.00 0.00 3.77
93 94 2.846950 AGTTGCTCATAGGGTAGGGTT 58.153 47.619 0.00 0.00 0.00 4.11
94 95 2.570386 AGTTGCTCATAGGGTAGGGT 57.430 50.000 0.00 0.00 0.00 4.34
95 96 2.224066 CGAAGTTGCTCATAGGGTAGGG 60.224 54.545 0.00 0.00 0.00 3.53
96 97 2.693591 TCGAAGTTGCTCATAGGGTAGG 59.306 50.000 0.00 0.00 0.00 3.18
97 98 3.632604 TCTCGAAGTTGCTCATAGGGTAG 59.367 47.826 0.00 0.00 0.00 3.18
98 99 3.628008 TCTCGAAGTTGCTCATAGGGTA 58.372 45.455 0.00 0.00 0.00 3.69
99 100 2.457598 TCTCGAAGTTGCTCATAGGGT 58.542 47.619 0.00 0.00 0.00 4.34
100 101 3.526931 TTCTCGAAGTTGCTCATAGGG 57.473 47.619 0.00 0.00 0.00 3.53
101 102 3.619038 GGTTTCTCGAAGTTGCTCATAGG 59.381 47.826 0.00 0.00 0.00 2.57
102 103 3.304559 CGGTTTCTCGAAGTTGCTCATAG 59.695 47.826 0.00 0.00 0.00 2.23
103 104 3.057104 TCGGTTTCTCGAAGTTGCTCATA 60.057 43.478 0.00 0.00 36.12 2.15
104 105 2.069273 CGGTTTCTCGAAGTTGCTCAT 58.931 47.619 0.00 0.00 0.00 2.90
105 106 1.067974 TCGGTTTCTCGAAGTTGCTCA 59.932 47.619 0.00 0.00 36.12 4.26
106 107 1.721926 CTCGGTTTCTCGAAGTTGCTC 59.278 52.381 0.00 0.00 38.77 4.26
107 108 1.784525 CTCGGTTTCTCGAAGTTGCT 58.215 50.000 0.00 0.00 38.77 3.91
108 109 0.164002 GCTCGGTTTCTCGAAGTTGC 59.836 55.000 0.00 0.00 38.77 4.17
109 110 0.790814 GGCTCGGTTTCTCGAAGTTG 59.209 55.000 0.00 0.00 38.77 3.16
110 111 0.391597 TGGCTCGGTTTCTCGAAGTT 59.608 50.000 0.00 0.00 38.77 2.66
111 112 0.391597 TTGGCTCGGTTTCTCGAAGT 59.608 50.000 0.00 0.00 38.77 3.01
112 113 0.790814 GTTGGCTCGGTTTCTCGAAG 59.209 55.000 0.00 0.00 38.77 3.79
113 114 0.105224 TGTTGGCTCGGTTTCTCGAA 59.895 50.000 0.00 0.00 38.77 3.71
114 115 0.320374 ATGTTGGCTCGGTTTCTCGA 59.680 50.000 0.00 0.00 37.60 4.04
115 116 2.004583 TATGTTGGCTCGGTTTCTCG 57.995 50.000 0.00 0.00 0.00 4.04
116 117 3.798202 AGATATGTTGGCTCGGTTTCTC 58.202 45.455 0.00 0.00 0.00 2.87
117 118 3.738281 CGAGATATGTTGGCTCGGTTTCT 60.738 47.826 0.00 0.00 45.54 2.52
118 119 2.540101 CGAGATATGTTGGCTCGGTTTC 59.460 50.000 0.00 0.00 45.54 2.78
119 120 2.550978 CGAGATATGTTGGCTCGGTTT 58.449 47.619 0.00 0.00 45.54 3.27
120 121 2.225068 CGAGATATGTTGGCTCGGTT 57.775 50.000 0.00 0.00 45.54 4.44
121 122 3.967886 CGAGATATGTTGGCTCGGT 57.032 52.632 0.00 0.00 45.54 4.69
124 125 3.728076 TGTACCGAGATATGTTGGCTC 57.272 47.619 6.04 0.89 0.00 4.70
125 126 3.741388 GCTTGTACCGAGATATGTTGGCT 60.741 47.826 6.04 0.00 0.00 4.75
126 127 2.544267 GCTTGTACCGAGATATGTTGGC 59.456 50.000 6.04 0.00 0.00 4.52
127 128 3.555956 GTGCTTGTACCGAGATATGTTGG 59.444 47.826 4.54 4.54 0.00 3.77
128 129 3.555956 GGTGCTTGTACCGAGATATGTTG 59.444 47.826 0.00 0.00 0.00 3.33
129 130 3.451178 AGGTGCTTGTACCGAGATATGTT 59.549 43.478 2.41 0.00 45.56 2.71
130 131 3.031736 AGGTGCTTGTACCGAGATATGT 58.968 45.455 2.41 0.00 45.56 2.29
131 132 3.643763 GAGGTGCTTGTACCGAGATATG 58.356 50.000 2.41 0.00 45.56 1.78
132 133 2.293677 CGAGGTGCTTGTACCGAGATAT 59.706 50.000 2.41 0.00 45.56 1.63
133 134 1.674441 CGAGGTGCTTGTACCGAGATA 59.326 52.381 2.41 0.00 45.56 1.98
134 135 0.456221 CGAGGTGCTTGTACCGAGAT 59.544 55.000 2.41 0.00 45.56 2.75
135 136 0.892358 ACGAGGTGCTTGTACCGAGA 60.892 55.000 10.89 0.00 45.56 4.04
136 137 0.806868 TACGAGGTGCTTGTACCGAG 59.193 55.000 2.41 3.76 45.56 4.63
137 138 0.806868 CTACGAGGTGCTTGTACCGA 59.193 55.000 2.41 0.00 45.56 4.69
138 139 0.524862 ACTACGAGGTGCTTGTACCG 59.475 55.000 2.41 0.00 45.56 4.02
139 140 1.467035 CGACTACGAGGTGCTTGTACC 60.467 57.143 0.00 0.00 42.66 3.34
140 141 1.466167 TCGACTACGAGGTGCTTGTAC 59.534 52.381 0.00 0.00 43.81 2.90
141 142 1.812235 TCGACTACGAGGTGCTTGTA 58.188 50.000 0.00 0.00 43.81 2.41
142 143 2.637521 TCGACTACGAGGTGCTTGT 58.362 52.632 0.00 0.00 43.81 3.16
153 154 2.585247 GGCATGCCCGTCGACTAC 60.585 66.667 27.24 3.17 0.00 2.73
154 155 1.110518 TATGGCATGCCCGTCGACTA 61.111 55.000 33.44 13.12 35.87 2.59
155 156 1.966901 TTATGGCATGCCCGTCGACT 61.967 55.000 33.44 11.61 35.87 4.18
156 157 1.092921 TTTATGGCATGCCCGTCGAC 61.093 55.000 33.44 5.18 35.87 4.20
157 158 0.393132 TTTTATGGCATGCCCGTCGA 60.393 50.000 33.44 15.55 35.87 4.20
158 159 0.667993 ATTTTATGGCATGCCCGTCG 59.332 50.000 33.44 0.00 35.87 5.12
159 160 2.100584 TCAATTTTATGGCATGCCCGTC 59.899 45.455 33.44 9.62 35.87 4.79
160 161 2.106566 TCAATTTTATGGCATGCCCGT 58.893 42.857 33.44 23.56 35.87 5.28
161 162 2.886862 TCAATTTTATGGCATGCCCG 57.113 45.000 33.44 11.51 35.87 6.13
162 163 4.768583 TCTTTCAATTTTATGGCATGCCC 58.231 39.130 33.44 16.23 34.56 5.36
163 164 6.930667 ATTCTTTCAATTTTATGGCATGCC 57.069 33.333 30.54 30.54 0.00 4.40
164 165 7.568134 CGCTATTCTTTCAATTTTATGGCATGC 60.568 37.037 9.90 9.90 0.00 4.06
165 166 7.568134 GCGCTATTCTTTCAATTTTATGGCATG 60.568 37.037 10.98 0.00 0.00 4.06
166 167 6.421801 GCGCTATTCTTTCAATTTTATGGCAT 59.578 34.615 4.88 4.88 0.00 4.40
167 168 5.748152 GCGCTATTCTTTCAATTTTATGGCA 59.252 36.000 0.00 0.00 0.00 4.92
168 169 5.175673 GGCGCTATTCTTTCAATTTTATGGC 59.824 40.000 7.64 0.00 0.00 4.40
169 170 5.399301 CGGCGCTATTCTTTCAATTTTATGG 59.601 40.000 7.64 0.00 0.00 2.74
170 171 5.399301 CCGGCGCTATTCTTTCAATTTTATG 59.601 40.000 7.64 0.00 0.00 1.90
171 172 5.298276 TCCGGCGCTATTCTTTCAATTTTAT 59.702 36.000 7.64 0.00 0.00 1.40
172 173 4.636648 TCCGGCGCTATTCTTTCAATTTTA 59.363 37.500 7.64 0.00 0.00 1.52
173 174 3.442273 TCCGGCGCTATTCTTTCAATTTT 59.558 39.130 7.64 0.00 0.00 1.82
174 175 3.013921 TCCGGCGCTATTCTTTCAATTT 58.986 40.909 7.64 0.00 0.00 1.82
175 176 2.614057 CTCCGGCGCTATTCTTTCAATT 59.386 45.455 7.64 0.00 0.00 2.32
176 177 2.158957 TCTCCGGCGCTATTCTTTCAAT 60.159 45.455 7.64 0.00 0.00 2.57
177 178 1.206132 TCTCCGGCGCTATTCTTTCAA 59.794 47.619 7.64 0.00 0.00 2.69
178 179 0.821517 TCTCCGGCGCTATTCTTTCA 59.178 50.000 7.64 0.00 0.00 2.69
179 180 1.067212 TCTCTCCGGCGCTATTCTTTC 59.933 52.381 7.64 0.00 0.00 2.62
180 181 1.112113 TCTCTCCGGCGCTATTCTTT 58.888 50.000 7.64 0.00 0.00 2.52
181 182 0.386113 GTCTCTCCGGCGCTATTCTT 59.614 55.000 7.64 0.00 0.00 2.52
182 183 0.466555 AGTCTCTCCGGCGCTATTCT 60.467 55.000 7.64 0.00 0.00 2.40
183 184 1.236628 TAGTCTCTCCGGCGCTATTC 58.763 55.000 7.64 0.00 0.00 1.75
184 185 1.688772 TTAGTCTCTCCGGCGCTATT 58.311 50.000 7.64 0.00 0.00 1.73
185 186 1.688772 TTTAGTCTCTCCGGCGCTAT 58.311 50.000 7.64 0.00 0.00 2.97
186 187 1.466856 TTTTAGTCTCTCCGGCGCTA 58.533 50.000 7.64 0.00 0.00 4.26
187 188 0.824759 ATTTTAGTCTCTCCGGCGCT 59.175 50.000 7.64 0.00 0.00 5.92
188 189 2.503920 TATTTTAGTCTCTCCGGCGC 57.496 50.000 0.00 0.00 0.00 6.53
189 190 4.448060 GGAATTATTTTAGTCTCTCCGGCG 59.552 45.833 0.00 0.00 0.00 6.46
190 191 5.467063 CAGGAATTATTTTAGTCTCTCCGGC 59.533 44.000 0.00 0.00 0.00 6.13
191 192 5.992217 CCAGGAATTATTTTAGTCTCTCCGG 59.008 44.000 0.00 0.00 0.00 5.14
192 193 6.817184 TCCAGGAATTATTTTAGTCTCTCCG 58.183 40.000 0.00 0.00 0.00 4.63
193 194 9.634021 ATTTCCAGGAATTATTTTAGTCTCTCC 57.366 33.333 1.58 0.00 0.00 3.71
206 207 9.104965 CGTGTACTCAAATATTTCCAGGAATTA 57.895 33.333 1.58 4.42 0.00 1.40
207 208 7.610305 ACGTGTACTCAAATATTTCCAGGAATT 59.390 33.333 1.58 1.92 0.00 2.17
208 209 7.065803 CACGTGTACTCAAATATTTCCAGGAAT 59.934 37.037 7.58 0.00 0.00 3.01
209 210 6.370442 CACGTGTACTCAAATATTTCCAGGAA 59.630 38.462 7.58 0.00 0.00 3.36
210 211 5.872617 CACGTGTACTCAAATATTTCCAGGA 59.127 40.000 7.58 0.00 0.00 3.86
211 212 5.642063 ACACGTGTACTCAAATATTTCCAGG 59.358 40.000 21.98 0.00 0.00 4.45
212 213 6.367695 TGACACGTGTACTCAAATATTTCCAG 59.632 38.462 23.44 0.17 0.00 3.86
213 214 6.224584 TGACACGTGTACTCAAATATTTCCA 58.775 36.000 23.44 7.02 0.00 3.53
214 215 6.715344 TGACACGTGTACTCAAATATTTCC 57.285 37.500 23.44 4.17 0.00 3.13
222 223 1.411246 AGGCTTGACACGTGTACTCAA 59.589 47.619 23.44 19.68 0.00 3.02
240 241 3.214328 CCATCCGGTTTCAAATCCTAGG 58.786 50.000 0.82 0.82 0.00 3.02
258 259 7.620888 AGATTCCTTGTGATGAAATTAACCCAT 59.379 33.333 0.00 0.00 0.00 4.00
259 260 6.953520 AGATTCCTTGTGATGAAATTAACCCA 59.046 34.615 0.00 0.00 0.00 4.51
265 266 7.395489 AGCAGTTAGATTCCTTGTGATGAAATT 59.605 33.333 0.00 0.00 0.00 1.82
269 270 5.426689 AGCAGTTAGATTCCTTGTGATGA 57.573 39.130 0.00 0.00 0.00 2.92
278 279 7.851387 AAGTTAGCTTAAGCAGTTAGATTCC 57.149 36.000 28.39 4.97 45.16 3.01
286 287 5.642063 TGCGAATTAAGTTAGCTTAAGCAGT 59.358 36.000 28.39 12.11 46.52 4.40
290 291 8.630278 TCTAGTGCGAATTAAGTTAGCTTAAG 57.370 34.615 15.69 0.00 46.52 1.85
308 310 5.269313 GCTTGTCAATTATGCTTCTAGTGC 58.731 41.667 4.07 4.07 0.00 4.40
355 357 9.461312 TGTTGAGCCATCTATTTTATTACAAGT 57.539 29.630 0.00 0.00 0.00 3.16
356 358 9.941664 CTGTTGAGCCATCTATTTTATTACAAG 57.058 33.333 0.00 0.00 0.00 3.16
425 435 5.630680 GCCAATATGTTGATGCCTATTTTCG 59.369 40.000 3.41 0.00 37.53 3.46
433 443 4.764679 TTATCGCCAATATGTTGATGCC 57.235 40.909 3.41 0.00 37.53 4.40
624 671 6.183360 GGTGTAATATGTTACGTCTACCCAGT 60.183 42.308 7.72 0.00 42.50 4.00
641 688 1.203453 TGGTCAGGTGGGGGTGTAATA 60.203 52.381 0.00 0.00 0.00 0.98
714 761 1.341089 ACTCCTCTCCTCACATACGCA 60.341 52.381 0.00 0.00 0.00 5.24
814 869 5.472478 GGTGGTTCTGGTTTCTACTTTTAGG 59.528 44.000 0.00 0.00 0.00 2.69
1062 1117 2.203337 TTCCGCTTGTGCTTGCCT 60.203 55.556 0.00 0.00 36.97 4.75
1097 1152 4.838152 TGATCGGCTTGCCGGCTC 62.838 66.667 29.94 25.18 35.72 4.70
1098 1153 4.408821 TTGATCGGCTTGCCGGCT 62.409 61.111 29.94 19.30 35.72 5.52
1099 1154 3.880846 CTTGATCGGCTTGCCGGC 61.881 66.667 29.94 22.73 0.00 6.13
1100 1155 3.204827 CCTTGATCGGCTTGCCGG 61.205 66.667 29.94 15.54 0.00 6.13
1101 1156 2.436646 ACCTTGATCGGCTTGCCG 60.437 61.111 26.01 26.01 0.00 5.69
1102 1157 2.409870 CCACCTTGATCGGCTTGCC 61.410 63.158 0.75 0.75 0.00 4.52
1103 1158 1.675641 ACCACCTTGATCGGCTTGC 60.676 57.895 0.00 0.00 0.00 4.01
1407 1462 1.446099 GTTGTCGATCAGCTGCGGA 60.446 57.895 9.47 4.68 0.00 5.54
1491 1546 5.046735 CGAACTTGGATGGATAGATGGATCT 60.047 44.000 0.00 0.00 40.86 2.75
1497 1552 2.289072 CGGCGAACTTGGATGGATAGAT 60.289 50.000 0.00 0.00 0.00 1.98
1498 1553 1.068588 CGGCGAACTTGGATGGATAGA 59.931 52.381 0.00 0.00 0.00 1.98
1499 1554 1.068588 TCGGCGAACTTGGATGGATAG 59.931 52.381 7.35 0.00 0.00 2.08
1500 1555 1.068588 CTCGGCGAACTTGGATGGATA 59.931 52.381 12.13 0.00 0.00 2.59
1536 1591 5.015733 GCAATTAAGCGCGATACATACATC 58.984 41.667 12.10 0.00 0.00 3.06
1547 1602 0.317269 CCCTCATGCAATTAAGCGCG 60.317 55.000 0.00 0.00 37.31 6.86
1615 1670 2.158696 GGAACGGAGGGAGTAGCTACTA 60.159 54.545 26.11 0.00 36.50 1.82
1616 1671 1.409942 GGAACGGAGGGAGTAGCTACT 60.410 57.143 26.35 26.35 39.71 2.57
1617 1672 1.031235 GGAACGGAGGGAGTAGCTAC 58.969 60.000 16.43 16.43 0.00 3.58
1621 1676 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1622 1677 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1623 1678 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1625 1680 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1626 1681 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1627 1682 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1628 1683 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1629 1684 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1630 1685 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1631 1686 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1632 1687 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1633 1688 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1634 1689 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1635 1690 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1640 1695 9.469097 ACTCTAGTACAAAGTTGAGTCATCTAT 57.531 33.333 4.14 0.00 36.73 1.98
1641 1696 8.865420 ACTCTAGTACAAAGTTGAGTCATCTA 57.135 34.615 4.14 0.00 36.73 1.98
1642 1697 7.768807 ACTCTAGTACAAAGTTGAGTCATCT 57.231 36.000 0.00 0.00 36.73 2.90
1643 1698 9.562583 CTAACTCTAGTACAAAGTTGAGTCATC 57.437 37.037 14.31 0.00 39.33 2.92
1644 1699 9.080097 ACTAACTCTAGTACAAAGTTGAGTCAT 57.920 33.333 14.31 0.00 39.33 3.06
1645 1700 8.461249 ACTAACTCTAGTACAAAGTTGAGTCA 57.539 34.615 14.31 0.00 39.33 3.41
1658 1713 9.565090 TGACTCAACTTTGTACTAACTCTAGTA 57.435 33.333 0.00 0.00 39.23 1.82
1659 1714 8.461249 TGACTCAACTTTGTACTAACTCTAGT 57.539 34.615 0.00 0.00 41.43 2.57
1660 1715 9.562583 GATGACTCAACTTTGTACTAACTCTAG 57.437 37.037 0.00 0.00 0.00 2.43
1661 1716 9.298250 AGATGACTCAACTTTGTACTAACTCTA 57.702 33.333 0.00 0.00 0.00 2.43
1662 1717 8.184304 AGATGACTCAACTTTGTACTAACTCT 57.816 34.615 0.00 0.00 0.00 3.24
1668 1723 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1669 1724 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1670 1725 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1671 1726 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1672 1727 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1673 1728 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1674 1729 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1675 1730 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1676 1731 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1677 1732 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1678 1733 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1679 1734 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1680 1735 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1681 1736 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1682 1737 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1683 1738 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1684 1739 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1685 1740 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1686 1741 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1687 1742 3.453353 CCTACTCCCTCCGTTCCAAAATA 59.547 47.826 0.00 0.00 0.00 1.40
1688 1743 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
1689 1744 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
1690 1745 1.272807 CCTACTCCCTCCGTTCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
1691 1746 0.115745 ACCTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 0.00 3.53
1692 1747 1.002069 TACCTACTCCCTCCGTTCCA 58.998 55.000 0.00 0.00 0.00 3.53
1693 1748 1.753649 GTTACCTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
1694 1749 2.732763 AGTTACCTACTCCCTCCGTTC 58.267 52.381 0.00 0.00 28.23 3.95
1695 1750 2.915657 AGTTACCTACTCCCTCCGTT 57.084 50.000 0.00 0.00 28.23 4.44
1696 1751 2.915657 AAGTTACCTACTCCCTCCGT 57.084 50.000 0.00 0.00 35.54 4.69
1697 1752 3.895998 ACTAAGTTACCTACTCCCTCCG 58.104 50.000 0.00 0.00 35.54 4.63
1698 1753 6.430864 AGTTACTAAGTTACCTACTCCCTCC 58.569 44.000 0.00 0.00 35.54 4.30
1699 1754 9.467796 TTTAGTTACTAAGTTACCTACTCCCTC 57.532 37.037 4.94 0.00 35.54 4.30
1700 1755 9.828691 TTTTAGTTACTAAGTTACCTACTCCCT 57.171 33.333 4.94 0.00 35.54 4.20
1828 1888 1.416030 GGTTGGCAACCCACAAAATCT 59.584 47.619 34.31 0.00 46.12 2.40
1841 1901 2.836372 TGGATGCAAATAATGGTTGGCA 59.164 40.909 0.00 0.00 0.00 4.92
1842 1902 3.197265 GTGGATGCAAATAATGGTTGGC 58.803 45.455 0.00 0.00 0.00 4.52
1844 1904 5.220700 GCAATGTGGATGCAAATAATGGTTG 60.221 40.000 0.00 0.00 43.29 3.77
1846 1906 4.444536 GCAATGTGGATGCAAATAATGGT 58.555 39.130 0.00 0.00 43.29 3.55
1856 1925 3.787785 TGATGATTTGCAATGTGGATGC 58.212 40.909 0.00 0.00 44.08 3.91
1857 1926 4.679654 CGATGATGATTTGCAATGTGGATG 59.320 41.667 0.00 0.00 0.00 3.51
1858 1927 4.581409 TCGATGATGATTTGCAATGTGGAT 59.419 37.500 0.00 0.00 0.00 3.41
1859 1928 3.946558 TCGATGATGATTTGCAATGTGGA 59.053 39.130 0.00 0.00 0.00 4.02
1860 1929 4.295857 TCGATGATGATTTGCAATGTGG 57.704 40.909 0.00 0.00 0.00 4.17
1861 1930 7.646526 ACTTAATCGATGATGATTTGCAATGTG 59.353 33.333 0.00 0.00 39.27 3.21
1862 1931 7.709947 ACTTAATCGATGATGATTTGCAATGT 58.290 30.769 0.00 0.00 39.27 2.71
1863 1932 9.667989 TTACTTAATCGATGATGATTTGCAATG 57.332 29.630 0.00 0.00 39.27 2.82
1864 1933 9.888878 CTTACTTAATCGATGATGATTTGCAAT 57.111 29.630 0.00 0.00 39.27 3.56
1865 1934 8.892723 ACTTACTTAATCGATGATGATTTGCAA 58.107 29.630 0.00 0.00 39.27 4.08
1866 1935 8.437360 ACTTACTTAATCGATGATGATTTGCA 57.563 30.769 0.00 0.00 39.27 4.08
1871 1940 9.658799 CCCAATACTTACTTAATCGATGATGAT 57.341 33.333 0.00 0.00 0.00 2.45
1872 1941 8.094548 CCCCAATACTTACTTAATCGATGATGA 58.905 37.037 0.00 0.00 0.00 2.92
1873 1942 7.878127 ACCCCAATACTTACTTAATCGATGATG 59.122 37.037 0.00 0.00 0.00 3.07
1874 1943 7.878127 CACCCCAATACTTACTTAATCGATGAT 59.122 37.037 0.00 0.00 0.00 2.45
1875 1944 7.147620 ACACCCCAATACTTACTTAATCGATGA 60.148 37.037 0.00 0.00 0.00 2.92
1876 1945 6.990349 ACACCCCAATACTTACTTAATCGATG 59.010 38.462 0.00 0.00 0.00 3.84
1877 1946 7.133133 ACACCCCAATACTTACTTAATCGAT 57.867 36.000 0.00 0.00 0.00 3.59
1878 1947 6.549433 ACACCCCAATACTTACTTAATCGA 57.451 37.500 0.00 0.00 0.00 3.59
1879 1948 7.334921 TCAAACACCCCAATACTTACTTAATCG 59.665 37.037 0.00 0.00 0.00 3.34
1880 1949 8.570068 TCAAACACCCCAATACTTACTTAATC 57.430 34.615 0.00 0.00 0.00 1.75
1881 1950 8.387813 TCTCAAACACCCCAATACTTACTTAAT 58.612 33.333 0.00 0.00 0.00 1.40
1882 1951 7.662669 GTCTCAAACACCCCAATACTTACTTAA 59.337 37.037 0.00 0.00 0.00 1.85
1883 1952 7.163441 GTCTCAAACACCCCAATACTTACTTA 58.837 38.462 0.00 0.00 0.00 2.24
1884 1953 6.002082 GTCTCAAACACCCCAATACTTACTT 58.998 40.000 0.00 0.00 0.00 2.24
1885 1954 5.072600 TGTCTCAAACACCCCAATACTTACT 59.927 40.000 0.00 0.00 31.20 2.24
1886 1955 5.310451 TGTCTCAAACACCCCAATACTTAC 58.690 41.667 0.00 0.00 31.20 2.34
1887 1956 5.308497 TCTGTCTCAAACACCCCAATACTTA 59.692 40.000 0.00 0.00 33.24 2.24
1890 1959 4.003648 CTCTGTCTCAAACACCCCAATAC 58.996 47.826 0.00 0.00 33.24 1.89
1893 1962 1.142870 CCTCTGTCTCAAACACCCCAA 59.857 52.381 0.00 0.00 33.24 4.12
1952 2023 9.281371 TGCATGAAATCAAAAACCATTAAATCA 57.719 25.926 0.00 0.00 0.00 2.57
2230 2304 3.436359 CCCAAAAACTAAACCATGCATGC 59.564 43.478 21.69 11.82 0.00 4.06
2231 2305 4.892433 TCCCAAAAACTAAACCATGCATG 58.108 39.130 20.19 20.19 0.00 4.06
2232 2306 5.490159 CATCCCAAAAACTAAACCATGCAT 58.510 37.500 0.00 0.00 0.00 3.96
2233 2307 4.802248 GCATCCCAAAAACTAAACCATGCA 60.802 41.667 0.00 0.00 35.31 3.96
2370 2445 5.357878 TGGAAGTTCTGGAATATGTCAATGC 59.642 40.000 2.25 0.00 0.00 3.56
2380 2455 6.239686 CCCATTTTCTTTGGAAGTTCTGGAAT 60.240 38.462 2.25 0.00 36.26 3.01
2384 2459 5.535753 ACCCATTTTCTTTGGAAGTTCTG 57.464 39.130 2.25 0.00 36.26 3.02
2444 2519 7.011482 GCCTAATGGTCAACTTAAGTCTACATG 59.989 40.741 8.95 3.17 35.27 3.21
2445 2520 7.048512 GCCTAATGGTCAACTTAAGTCTACAT 58.951 38.462 8.95 8.60 35.27 2.29
2451 2526 4.650972 TGGCCTAATGGTCAACTTAAGT 57.349 40.909 3.32 1.12 46.26 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.