Multiple sequence alignment - TraesCS1B01G319600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G319600 chr1B 100.000 4382 0 0 1 4382 543604611 543600230 0.000000e+00 8093.0
1 TraesCS1B01G319600 chr1B 82.504 623 91 12 828 1441 543889129 543888516 8.340000e-147 531.0
2 TraesCS1B01G319600 chr1B 84.387 506 43 13 2744 3242 543885340 543884864 8.580000e-127 464.0
3 TraesCS1B01G319600 chr1B 87.675 357 29 11 3259 3613 543884805 543884462 6.830000e-108 401.0
4 TraesCS1B01G319600 chr1B 86.513 304 28 8 441 734 543889550 543889250 5.470000e-84 322.0
5 TraesCS1B01G319600 chr1B 82.482 137 20 3 615 750 543889302 543889169 2.770000e-22 117.0
6 TraesCS1B01G319600 chr1B 93.506 77 5 0 2425 2501 543885428 543885352 9.960000e-22 115.0
7 TraesCS1B01G319600 chr1B 83.721 86 14 0 1350 1435 603284493 603284408 1.010000e-11 82.4
8 TraesCS1B01G319600 chr1D 87.973 1164 100 13 291 1441 404254218 404253082 0.000000e+00 1338.0
9 TraesCS1B01G319600 chr1D 89.420 879 68 12 1650 2525 404253063 404252207 0.000000e+00 1085.0
10 TraesCS1B01G319600 chr1D 90.796 641 52 4 3736 4376 21638259 21638892 0.000000e+00 850.0
11 TraesCS1B01G319600 chr1D 89.391 443 43 3 9 449 404306459 404306019 4.950000e-154 555.0
12 TraesCS1B01G319600 chr1D 85.321 436 43 14 1657 2083 404289963 404289540 8.710000e-117 431.0
13 TraesCS1B01G319600 chr1D 82.834 501 40 18 2744 3242 404289092 404288636 1.470000e-109 407.0
14 TraesCS1B01G319600 chr1D 87.826 345 26 10 3263 3604 404288578 404288247 1.480000e-104 390.0
15 TraesCS1B01G319600 chr1D 86.093 302 33 7 441 734 404305645 404305345 2.540000e-82 316.0
16 TraesCS1B01G319600 chr1D 90.222 225 21 1 19 243 404254522 404254299 4.290000e-75 292.0
17 TraesCS1B01G319600 chr1D 78.815 439 62 21 3272 3703 404485638 404485224 2.600000e-67 267.0
18 TraesCS1B01G319600 chr1D 90.526 190 14 3 3423 3612 404252046 404251861 9.410000e-62 248.0
19 TraesCS1B01G319600 chr1D 93.506 77 5 0 2425 2501 404289180 404289104 9.960000e-22 115.0
20 TraesCS1B01G319600 chr3B 90.586 648 54 6 3735 4382 760331414 760332054 0.000000e+00 852.0
21 TraesCS1B01G319600 chr6A 87.020 547 65 5 3736 4281 390579549 390580090 2.900000e-171 612.0
22 TraesCS1B01G319600 chr2D 83.914 603 90 5 3736 4337 18702696 18703292 1.770000e-158 569.0
23 TraesCS1B01G319600 chr2D 80.707 622 106 13 3767 4382 52682157 52681544 5.130000e-129 472.0
24 TraesCS1B01G319600 chr2D 89.815 216 14 6 1444 1651 421920590 421920375 2.010000e-68 270.0
25 TraesCS1B01G319600 chr5D 82.233 636 107 5 3748 4382 322645105 322644475 1.070000e-150 544.0
26 TraesCS1B01G319600 chr1A 81.032 717 93 17 737 1441 499941278 499940593 8.340000e-147 531.0
27 TraesCS1B01G319600 chr1A 88.837 430 42 5 21 449 499942424 499942000 1.400000e-144 523.0
28 TraesCS1B01G319600 chr1A 80.696 632 109 9 3758 4382 23693267 23693892 3.070000e-131 479.0
29 TraesCS1B01G319600 chr1A 84.879 496 45 11 2748 3242 499939980 499939514 1.430000e-129 473.0
30 TraesCS1B01G319600 chr1A 88.116 345 28 9 3272 3615 499939444 499939112 8.830000e-107 398.0
31 TraesCS1B01G319600 chr1A 77.331 622 130 10 3758 4376 100463279 100463892 1.500000e-94 357.0
32 TraesCS1B01G319600 chr1A 87.365 277 29 5 441 715 499941623 499941351 3.290000e-81 313.0
33 TraesCS1B01G319600 chr1A 94.681 94 5 0 2425 2518 499940103 499940010 3.530000e-31 147.0
34 TraesCS1B01G319600 chr1A 86.869 99 13 0 2269 2367 500838152 500838054 1.290000e-20 111.0
35 TraesCS1B01G319600 chr3D 80.968 620 106 11 3767 4382 302004669 302004058 8.520000e-132 481.0
36 TraesCS1B01G319600 chr3D 77.188 640 123 18 3748 4382 30214137 30214758 6.970000e-93 351.0
37 TraesCS1B01G319600 chr3D 89.041 146 15 1 2567 2711 407741549 407741694 3.480000e-41 180.0
38 TraesCS1B01G319600 chr2A 80.320 625 106 13 3766 4381 610043922 610043306 1.440000e-124 457.0
39 TraesCS1B01G319600 chr2A 79.186 639 122 11 3747 4382 413829260 413828630 2.420000e-117 433.0
40 TraesCS1B01G319600 chr2A 89.831 118 12 0 2271 2388 764900880 764900997 7.590000e-33 152.0
41 TraesCS1B01G319600 chr5B 76.935 633 127 15 3758 4382 500545067 500545688 4.200000e-90 342.0
42 TraesCS1B01G319600 chr5B 88.318 214 19 4 1444 1651 511401956 511401743 7.280000e-63 252.0
43 TraesCS1B01G319600 chr7A 90.094 212 18 3 1443 1651 100508791 100509002 5.580000e-69 272.0
44 TraesCS1B01G319600 chr7A 90.094 212 18 3 1443 1651 100512080 100512291 5.580000e-69 272.0
45 TraesCS1B01G319600 chr7A 87.273 220 24 4 1438 1654 26883247 26883029 9.410000e-62 248.0
46 TraesCS1B01G319600 chr7A 91.463 82 7 0 1360 1441 204159704 204159623 3.580000e-21 113.0
47 TraesCS1B01G319600 chr2B 89.640 222 12 3 1444 1654 658125596 658125375 5.580000e-69 272.0
48 TraesCS1B01G319600 chr4A 89.815 216 14 4 1444 1651 737060973 737061188 2.010000e-68 270.0
49 TraesCS1B01G319600 chr4A 89.655 145 14 1 2567 2711 6877716 6877859 2.690000e-42 183.0
50 TraesCS1B01G319600 chr4A 89.655 145 14 1 2567 2711 6883996 6884139 2.690000e-42 183.0
51 TraesCS1B01G319600 chr6B 86.784 227 25 4 1444 1667 548387500 548387276 9.410000e-62 248.0
52 TraesCS1B01G319600 chr6B 84.615 208 29 3 1444 1651 294889452 294889656 2.070000e-48 204.0
53 TraesCS1B01G319600 chr7B 91.667 84 7 0 1358 1441 158367059 158366976 2.770000e-22 117.0
54 TraesCS1B01G319600 chr7D 91.463 82 7 0 1360 1441 194469083 194469002 3.580000e-21 113.0
55 TraesCS1B01G319600 chr7D 74.074 297 55 12 4091 4382 564213735 564213456 7.750000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G319600 chr1B 543600230 543604611 4381 True 8093.00 8093 100.000000 1 4382 1 chr1B.!!$R1 4381
1 TraesCS1B01G319600 chr1B 543884462 543889550 5088 True 325.00 531 86.177833 441 3613 6 chr1B.!!$R3 3172
2 TraesCS1B01G319600 chr1D 21638259 21638892 633 False 850.00 850 90.796000 3736 4376 1 chr1D.!!$F1 640
3 TraesCS1B01G319600 chr1D 404251861 404254522 2661 True 740.75 1338 89.535250 19 3612 4 chr1D.!!$R2 3593
4 TraesCS1B01G319600 chr1D 404305345 404306459 1114 True 435.50 555 87.742000 9 734 2 chr1D.!!$R4 725
5 TraesCS1B01G319600 chr1D 404288247 404289963 1716 True 335.75 431 87.371750 1657 3604 4 chr1D.!!$R3 1947
6 TraesCS1B01G319600 chr3B 760331414 760332054 640 False 852.00 852 90.586000 3735 4382 1 chr3B.!!$F1 647
7 TraesCS1B01G319600 chr6A 390579549 390580090 541 False 612.00 612 87.020000 3736 4281 1 chr6A.!!$F1 545
8 TraesCS1B01G319600 chr2D 18702696 18703292 596 False 569.00 569 83.914000 3736 4337 1 chr2D.!!$F1 601
9 TraesCS1B01G319600 chr2D 52681544 52682157 613 True 472.00 472 80.707000 3767 4382 1 chr2D.!!$R1 615
10 TraesCS1B01G319600 chr5D 322644475 322645105 630 True 544.00 544 82.233000 3748 4382 1 chr5D.!!$R1 634
11 TraesCS1B01G319600 chr1A 23693267 23693892 625 False 479.00 479 80.696000 3758 4382 1 chr1A.!!$F1 624
12 TraesCS1B01G319600 chr1A 499939112 499942424 3312 True 397.50 531 87.485000 21 3615 6 chr1A.!!$R2 3594
13 TraesCS1B01G319600 chr1A 100463279 100463892 613 False 357.00 357 77.331000 3758 4376 1 chr1A.!!$F2 618
14 TraesCS1B01G319600 chr3D 302004058 302004669 611 True 481.00 481 80.968000 3767 4382 1 chr3D.!!$R1 615
15 TraesCS1B01G319600 chr3D 30214137 30214758 621 False 351.00 351 77.188000 3748 4382 1 chr3D.!!$F1 634
16 TraesCS1B01G319600 chr2A 610043306 610043922 616 True 457.00 457 80.320000 3766 4381 1 chr2A.!!$R2 615
17 TraesCS1B01G319600 chr2A 413828630 413829260 630 True 433.00 433 79.186000 3747 4382 1 chr2A.!!$R1 635
18 TraesCS1B01G319600 chr5B 500545067 500545688 621 False 342.00 342 76.935000 3758 4382 1 chr5B.!!$F1 624
19 TraesCS1B01G319600 chr7A 100508791 100512291 3500 False 272.00 272 90.094000 1443 1651 2 chr7A.!!$F1 208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1880 0.464373 CCCACATACAATCTGCCGCT 60.464 55.0 0.0 0.0 0.0 5.52 F
1213 2147 0.666274 TCACATCACTTGCGACGACC 60.666 55.0 0.0 0.0 0.0 4.79 F
2652 6286 0.031178 GCCACTTTCAAGCCACACAG 59.969 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 6267 0.031178 CTGTGTGGCTTGAAAGTGGC 59.969 55.0 0.00 0.0 0.0 5.01 R
2678 6312 0.104120 TTGCCGATCGTCTGGTATGG 59.896 55.0 15.09 0.0 0.0 2.74 R
3544 7403 0.251354 AGCAACAGCCACATCGATCT 59.749 50.0 0.00 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 56 7.117956 CCATCTATAGAGTCATTGCATGAACAG 59.882 40.741 8.70 0.00 41.69 3.16
96 99 3.071479 TCCATACCGTCAACAGAAAAGC 58.929 45.455 0.00 0.00 0.00 3.51
133 136 7.080099 GCATAGTGACATGCCATATAACTTTG 58.920 38.462 8.23 0.00 44.55 2.77
229 232 4.202430 GGACCCCGACAATATTGGAACTAT 60.202 45.833 19.37 1.21 32.66 2.12
248 251 7.362401 GGAACTATCAGTTGCAGAACATCAAAT 60.362 37.037 5.78 0.00 44.58 2.32
317 374 3.320541 CACAAATTCTAACAGGCAACCCA 59.679 43.478 0.00 0.00 37.17 4.51
352 409 8.405418 TCTATGTAAGGAGTTATATGAACGCT 57.595 34.615 0.00 0.00 0.00 5.07
393 450 2.603560 GTCGGAATTGTAGGCTCGAAAG 59.396 50.000 0.00 0.00 0.00 2.62
408 465 6.710744 AGGCTCGAAAGTATGAAAGAGAAAAA 59.289 34.615 0.00 0.00 0.00 1.94
433 490 3.364460 ACCTACTGTGCATGGCAATAA 57.636 42.857 0.00 0.00 41.47 1.40
472 1296 1.693062 ACAATTGCCAGCATGAAACCA 59.307 42.857 5.05 0.00 39.69 3.67
675 1512 7.802251 GTCTAACTCTATCAATGCATGCATTTC 59.198 37.037 37.11 10.51 43.32 2.17
680 1517 7.045126 TCTATCAATGCATGCATTTCAATCA 57.955 32.000 37.11 19.72 43.32 2.57
770 1695 9.258826 GAGCGTATAGATATAACTCTTCCGATA 57.741 37.037 0.00 0.00 0.00 2.92
790 1715 6.018425 CCGATACATGCATCATATCTTAAGGC 60.018 42.308 18.75 0.00 0.00 4.35
792 1717 4.338879 ACATGCATCATATCTTAAGGCCC 58.661 43.478 0.00 0.00 0.00 5.80
809 1738 5.234466 AGGCCCTATCTTTAGCATTAGTG 57.766 43.478 0.00 0.00 0.00 2.74
818 1747 5.253330 TCTTTAGCATTAGTGACCAAAGGG 58.747 41.667 0.00 0.00 41.29 3.95
820 1749 0.817654 GCATTAGTGACCAAAGGGGC 59.182 55.000 0.00 0.00 45.44 5.80
826 1755 2.915137 GACCAAAGGGGCGCCAAA 60.915 61.111 30.85 0.00 42.05 3.28
845 1774 3.943691 GTGGCACGTACCCCACCA 61.944 66.667 16.99 3.87 44.48 4.17
870 1799 4.344865 GCACACCACCATCCCCGT 62.345 66.667 0.00 0.00 0.00 5.28
910 1842 1.051812 CCCTCACACCAACTGACTCT 58.948 55.000 0.00 0.00 0.00 3.24
912 1844 1.336332 CCTCACACCAACTGACTCTCG 60.336 57.143 0.00 0.00 0.00 4.04
942 1875 1.670811 GCGGAACCCACATACAATCTG 59.329 52.381 0.00 0.00 0.00 2.90
945 1878 1.670811 GAACCCACATACAATCTGCCG 59.329 52.381 0.00 0.00 0.00 5.69
947 1880 0.464373 CCCACATACAATCTGCCGCT 60.464 55.000 0.00 0.00 0.00 5.52
990 1923 1.533273 ACGACACCACTAGCCCTGT 60.533 57.895 0.00 0.00 0.00 4.00
993 1926 1.848652 GACACCACTAGCCCTGTCTA 58.151 55.000 6.91 0.00 31.99 2.59
995 1928 2.166664 GACACCACTAGCCCTGTCTAAG 59.833 54.545 6.91 0.00 31.99 2.18
1011 1944 0.689745 TAAGACCTATGGCGCCCACT 60.690 55.000 26.77 11.49 35.80 4.00
1052 1985 2.233922 CCCTGTCAGTAATCGTCCTTGT 59.766 50.000 0.00 0.00 0.00 3.16
1057 1990 2.894765 TCAGTAATCGTCCTTGTGACCA 59.105 45.455 0.00 0.00 41.18 4.02
1077 2010 1.529152 TTGCGTCGACCCTTCTGCTA 61.529 55.000 10.58 0.25 0.00 3.49
1111 2044 0.721154 GAATGACATTGACGCGCTCA 59.279 50.000 5.73 6.66 0.00 4.26
1185 2119 1.227853 GCAGTTGGTCGACCCTTGT 60.228 57.895 31.19 10.94 34.29 3.16
1194 2128 1.071228 GTCGACCCTTGTACCTGGTTT 59.929 52.381 3.84 0.00 30.97 3.27
1213 2147 0.666274 TCACATCACTTGCGACGACC 60.666 55.000 0.00 0.00 0.00 4.79
1289 2223 1.202417 GCGAGATTCTGATTCCGTCCA 60.202 52.381 0.00 0.00 0.00 4.02
1294 2228 3.198635 AGATTCTGATTCCGTCCATGTGT 59.801 43.478 0.00 0.00 0.00 3.72
1302 2236 1.004560 CGTCCATGTGTGTGCCTCT 60.005 57.895 0.00 0.00 0.00 3.69
1329 2263 6.413783 ACTCCCCGTGTTTCAAAATAATTT 57.586 33.333 0.00 0.00 0.00 1.82
1485 2423 7.219535 GTGAATAAGTCATTCGCGTAGTTCTAA 59.780 37.037 5.77 0.00 45.25 2.10
1491 2429 2.795121 TCGCGTAGTTCTAAGTCGAC 57.205 50.000 7.70 7.70 0.00 4.20
1611 2552 9.627123 ATTTAATTCCTCAAATCGATGACCTAA 57.373 29.630 0.00 0.00 0.00 2.69
1619 2560 6.392354 TCAAATCGATGACCTAAAACTACGT 58.608 36.000 0.00 0.00 0.00 3.57
1645 2586 1.831736 ACTTATTCACCTGGACGGAGG 59.168 52.381 0.00 0.00 39.28 4.30
1653 2594 3.202818 TCACCTGGACGGAGGTAGTATAA 59.797 47.826 0.00 0.00 45.15 0.98
1664 2605 9.978044 GACGGAGGTAGTATAATAGATTTTTGT 57.022 33.333 0.00 0.00 0.00 2.83
1764 2709 3.629398 GGAAGTGCTTTGTATCCATCCAG 59.371 47.826 0.00 0.00 0.00 3.86
1816 2761 2.821378 TGTGGAACTGGATGAGCAAATG 59.179 45.455 0.00 0.00 38.04 2.32
1835 2805 8.316214 AGCAAATGGATTATGATTGTCTTGTTT 58.684 29.630 0.00 0.00 0.00 2.83
1893 2864 1.366679 TGTGTCGCGTTTGGTTTACA 58.633 45.000 5.77 0.00 0.00 2.41
1968 2941 4.976864 TGTTAGAGGGTTTTTGGTACTCC 58.023 43.478 0.00 0.00 0.00 3.85
1994 2967 1.203100 AGTGGAGCAGATGCCCTTTTT 60.203 47.619 0.14 0.00 43.38 1.94
2047 3028 6.573664 CATGGAGTAAAACATGGAAGAACA 57.426 37.500 0.00 0.00 40.50 3.18
2203 5717 5.088739 GCAAGATTACAGGAACAATGTTCG 58.911 41.667 18.52 9.34 32.02 3.95
2368 5882 9.284968 GTACCAAGCAGATATATTTACCACAAT 57.715 33.333 0.00 0.00 0.00 2.71
2394 5908 9.490379 TCTAAAGAATGAGAAAACTTGTACTCC 57.510 33.333 0.00 0.00 0.00 3.85
2397 5911 9.495572 AAAGAATGAGAAAACTTGTACTCCTAG 57.504 33.333 0.00 0.00 0.00 3.02
2398 5912 8.423906 AGAATGAGAAAACTTGTACTCCTAGA 57.576 34.615 0.00 0.00 0.00 2.43
2403 5917 9.475620 TGAGAAAACTTGTACTCCTAGATATGA 57.524 33.333 0.00 0.00 0.00 2.15
2458 6039 2.838813 GGTAGGCCTAGTCCAAAACTCT 59.161 50.000 14.38 0.00 39.55 3.24
2526 6107 6.454795 TGTTGAGTGACTGCTTTTTCTTTTT 58.545 32.000 0.00 0.00 0.00 1.94
2546 6127 6.394025 TTTTTGCGGGTTCAATAGTAGTTT 57.606 33.333 0.00 0.00 0.00 2.66
2553 6187 6.275335 CGGGTTCAATAGTAGTTTATTCCGA 58.725 40.000 0.00 0.00 32.63 4.55
2555 6189 7.440255 CGGGTTCAATAGTAGTTTATTCCGATT 59.560 37.037 0.00 0.00 32.63 3.34
2619 6253 2.702592 TCGAGAGAGAAGACCTCCTC 57.297 55.000 0.00 0.00 42.97 3.71
2620 6254 1.909986 TCGAGAGAGAAGACCTCCTCA 59.090 52.381 0.00 0.00 42.97 3.86
2621 6255 2.306219 TCGAGAGAGAAGACCTCCTCAA 59.694 50.000 0.00 0.00 42.97 3.02
2622 6256 3.053991 TCGAGAGAGAAGACCTCCTCAAT 60.054 47.826 0.00 0.00 42.97 2.57
2623 6257 4.164413 TCGAGAGAGAAGACCTCCTCAATA 59.836 45.833 0.00 0.00 42.97 1.90
2624 6258 4.274950 CGAGAGAGAAGACCTCCTCAATAC 59.725 50.000 0.00 0.00 42.97 1.89
2625 6259 5.197451 GAGAGAGAAGACCTCCTCAATACA 58.803 45.833 0.00 0.00 42.97 2.29
2626 6260 5.776358 AGAGAGAAGACCTCCTCAATACAT 58.224 41.667 0.00 0.00 42.97 2.29
2627 6261 6.201591 AGAGAGAAGACCTCCTCAATACATT 58.798 40.000 0.00 0.00 42.97 2.71
2628 6262 6.098124 AGAGAGAAGACCTCCTCAATACATTG 59.902 42.308 0.00 0.00 42.97 2.82
2629 6263 5.130145 AGAGAAGACCTCCTCAATACATTGG 59.870 44.000 2.26 0.00 42.97 3.16
2630 6264 4.164988 AGAAGACCTCCTCAATACATTGGG 59.835 45.833 2.26 0.00 38.00 4.12
2646 6280 2.997315 GGGGGCCACTTTCAAGCC 60.997 66.667 4.16 0.00 46.37 4.35
2649 6283 3.854856 GGCCACTTTCAAGCCACA 58.145 55.556 0.00 0.00 46.34 4.17
2652 6286 0.031178 GCCACTTTCAAGCCACACAG 59.969 55.000 0.00 0.00 0.00 3.66
2655 6289 1.027357 ACTTTCAAGCCACACAGCTG 58.973 50.000 13.48 13.48 44.11 4.24
2666 6300 3.384816 CACAGCTGTGGTTCACTCA 57.615 52.632 34.65 0.00 42.10 3.41
2667 6301 1.224075 CACAGCTGTGGTTCACTCAG 58.776 55.000 34.65 8.94 42.10 3.35
2668 6302 1.123077 ACAGCTGTGGTTCACTCAGA 58.877 50.000 20.97 0.00 41.97 3.27
2680 6314 5.306532 GTTCACTCAGAACGACTATACCA 57.693 43.478 0.00 0.00 46.36 3.25
2681 6315 5.892568 GTTCACTCAGAACGACTATACCAT 58.107 41.667 0.00 0.00 46.36 3.55
2683 6317 6.615264 TCACTCAGAACGACTATACCATAC 57.385 41.667 0.00 0.00 0.00 2.39
2686 6320 5.531659 ACTCAGAACGACTATACCATACCAG 59.468 44.000 0.00 0.00 0.00 4.00
2687 6321 5.687780 TCAGAACGACTATACCATACCAGA 58.312 41.667 0.00 0.00 0.00 3.86
2689 6323 4.514441 AGAACGACTATACCATACCAGACG 59.486 45.833 0.00 0.00 33.50 4.18
2690 6324 4.077300 ACGACTATACCATACCAGACGA 57.923 45.455 0.00 0.00 32.09 4.20
2691 6325 4.649692 ACGACTATACCATACCAGACGAT 58.350 43.478 0.00 0.00 32.09 3.73
2692 6326 4.694509 ACGACTATACCATACCAGACGATC 59.305 45.833 0.00 0.00 32.09 3.69
2693 6327 4.201695 CGACTATACCATACCAGACGATCG 60.202 50.000 14.88 14.88 0.00 3.69
2695 6329 0.956633 TACCATACCAGACGATCGGC 59.043 55.000 20.98 18.17 0.00 5.54
2697 6331 0.104120 CCATACCAGACGATCGGCAA 59.896 55.000 25.47 5.70 0.00 4.52
2698 6332 1.209128 CATACCAGACGATCGGCAAC 58.791 55.000 25.47 9.57 0.00 4.17
2699 6333 1.112113 ATACCAGACGATCGGCAACT 58.888 50.000 25.47 11.75 0.00 3.16
2701 6335 0.034896 ACCAGACGATCGGCAACTTT 59.965 50.000 25.47 0.00 0.00 2.66
2702 6336 1.274167 ACCAGACGATCGGCAACTTTA 59.726 47.619 25.47 0.00 0.00 1.85
2704 6338 2.936498 CCAGACGATCGGCAACTTTATT 59.064 45.455 25.47 0.00 0.00 1.40
2705 6339 3.374058 CCAGACGATCGGCAACTTTATTT 59.626 43.478 25.47 0.00 0.00 1.40
2706 6340 4.142687 CCAGACGATCGGCAACTTTATTTT 60.143 41.667 25.47 0.00 0.00 1.82
2707 6341 4.788100 CAGACGATCGGCAACTTTATTTTG 59.212 41.667 25.47 4.26 0.00 2.44
2708 6342 4.693566 AGACGATCGGCAACTTTATTTTGA 59.306 37.500 25.47 0.00 0.00 2.69
2709 6343 4.969816 ACGATCGGCAACTTTATTTTGAG 58.030 39.130 20.98 0.00 0.00 3.02
2710 6344 4.454504 ACGATCGGCAACTTTATTTTGAGT 59.545 37.500 20.98 0.00 0.00 3.41
2711 6345 4.788100 CGATCGGCAACTTTATTTTGAGTG 59.212 41.667 7.38 0.00 0.00 3.51
2712 6346 5.390461 CGATCGGCAACTTTATTTTGAGTGA 60.390 40.000 7.38 0.00 0.00 3.41
2713 6347 5.103290 TCGGCAACTTTATTTTGAGTGAC 57.897 39.130 0.00 0.00 0.00 3.67
2714 6348 4.819630 TCGGCAACTTTATTTTGAGTGACT 59.180 37.500 0.00 0.00 0.00 3.41
2716 6350 4.681483 GGCAACTTTATTTTGAGTGACTGC 59.319 41.667 0.00 0.00 0.00 4.40
2721 6355 8.872845 CAACTTTATTTTGAGTGACTGCTTTTT 58.127 29.630 0.00 0.00 0.00 1.94
2740 6374 4.916983 TTTTGAGGGAACATGTGAAGTG 57.083 40.909 0.00 0.00 0.00 3.16
2751 6385 2.245159 TGTGAAGTGACTGCTTGGAG 57.755 50.000 0.00 0.00 0.00 3.86
2772 6406 3.254903 AGCACCGTCCTTTTTGTATTTCC 59.745 43.478 0.00 0.00 0.00 3.13
2789 6423 6.762187 TGTATTTCCGGACGCATCTAATTTTA 59.238 34.615 1.83 0.00 0.00 1.52
2836 6541 2.178912 TTTAACAGAGACCTTGGCCG 57.821 50.000 0.00 0.00 0.00 6.13
2839 6545 4.020617 CAGAGACCTTGGCCGCCA 62.021 66.667 8.43 8.43 0.00 5.69
2858 6671 2.283388 AACCTGTCCGGACCGCTA 60.283 61.111 31.19 12.20 36.31 4.26
2908 6721 4.994217 GCTAGAATATTTGTGAGCCTCTCC 59.006 45.833 0.00 0.00 0.00 3.71
2909 6722 5.453903 GCTAGAATATTTGTGAGCCTCTCCA 60.454 44.000 0.00 0.00 0.00 3.86
2910 6723 5.441718 AGAATATTTGTGAGCCTCTCCAA 57.558 39.130 0.00 0.00 0.00 3.53
2911 6724 5.189180 AGAATATTTGTGAGCCTCTCCAAC 58.811 41.667 0.00 0.00 0.00 3.77
2912 6725 2.206576 ATTTGTGAGCCTCTCCAACC 57.793 50.000 0.00 0.00 0.00 3.77
2932 6745 2.094752 CCCAACCCAGTTTATTTCTGCG 60.095 50.000 0.00 0.00 0.00 5.18
2952 6766 3.651562 GGTGACGATTTACCAATGACG 57.348 47.619 0.00 0.00 36.94 4.35
2954 6768 3.061697 GGTGACGATTTACCAATGACGAC 59.938 47.826 0.00 0.00 36.94 4.34
2956 6770 1.657094 ACGATTTACCAATGACGACGC 59.343 47.619 0.00 0.00 0.00 5.19
2957 6771 1.656594 CGATTTACCAATGACGACGCA 59.343 47.619 0.00 0.00 0.00 5.24
2958 6772 2.534150 CGATTTACCAATGACGACGCAC 60.534 50.000 0.00 0.00 0.00 5.34
2960 6774 1.619526 TTACCAATGACGACGCACGC 61.620 55.000 0.00 0.00 46.94 5.34
2961 6775 2.480853 TACCAATGACGACGCACGCT 62.481 55.000 0.00 0.00 46.94 5.07
2962 6776 2.667318 CCAATGACGACGCACGCTT 61.667 57.895 0.00 0.00 46.94 4.68
2963 6777 1.225475 CAATGACGACGCACGCTTC 60.225 57.895 0.00 0.00 46.94 3.86
2964 6778 1.372997 AATGACGACGCACGCTTCT 60.373 52.632 0.00 0.00 46.94 2.85
2965 6779 0.109458 AATGACGACGCACGCTTCTA 60.109 50.000 0.00 0.00 46.94 2.10
2966 6780 0.100682 ATGACGACGCACGCTTCTAT 59.899 50.000 0.00 0.00 46.94 1.98
2967 6781 0.728542 TGACGACGCACGCTTCTATA 59.271 50.000 0.00 0.00 46.94 1.31
2968 6782 1.130938 TGACGACGCACGCTTCTATAA 59.869 47.619 0.00 0.00 46.94 0.98
2969 6783 2.223409 TGACGACGCACGCTTCTATAAT 60.223 45.455 0.00 0.00 46.94 1.28
2970 6784 2.117137 ACGACGCACGCTTCTATAATG 58.883 47.619 0.00 0.00 46.94 1.90
2971 6785 1.452025 CGACGCACGCTTCTATAATGG 59.548 52.381 0.00 0.00 34.51 3.16
2972 6786 2.470821 GACGCACGCTTCTATAATGGT 58.529 47.619 0.00 0.00 0.00 3.55
2973 6787 3.635331 GACGCACGCTTCTATAATGGTA 58.365 45.455 0.00 0.00 0.00 3.25
2974 6788 4.235360 GACGCACGCTTCTATAATGGTAT 58.765 43.478 0.00 0.00 0.00 2.73
2975 6789 4.628074 ACGCACGCTTCTATAATGGTATT 58.372 39.130 0.00 0.00 0.00 1.89
2976 6790 4.447724 ACGCACGCTTCTATAATGGTATTG 59.552 41.667 0.00 0.00 0.00 1.90
2977 6791 4.684242 CGCACGCTTCTATAATGGTATTGA 59.316 41.667 0.00 0.00 0.00 2.57
2978 6792 5.388475 CGCACGCTTCTATAATGGTATTGAC 60.388 44.000 0.00 0.00 0.00 3.18
2986 6800 7.931015 TCTATAATGGTATTGACCCACTCTT 57.069 36.000 0.00 0.00 46.32 2.85
3016 6830 7.431249 CATCTGATCAACAGGGAAATTTATGG 58.569 38.462 0.00 0.00 45.76 2.74
3023 6837 3.515104 ACAGGGAAATTTATGGCAACCAG 59.485 43.478 0.00 0.00 36.75 4.00
3026 6840 4.020307 AGGGAAATTTATGGCAACCAGTTG 60.020 41.667 6.15 6.15 43.14 3.16
3035 6849 3.494254 AACCAGTTGACCGGCCCA 61.494 61.111 0.00 0.00 0.00 5.36
3057 6871 3.531821 CCAAAGGAACTGGTTGGGT 57.468 52.632 0.00 0.00 41.34 4.51
3125 6939 4.834496 TCTTTGCATTCCAATTGTTCTCCT 59.166 37.500 4.43 0.00 32.49 3.69
3141 6955 3.476552 TCTCCTTGCACTTCGTTTCATT 58.523 40.909 0.00 0.00 0.00 2.57
3148 6962 2.350772 GCACTTCGTTTCATTCACCCTG 60.351 50.000 0.00 0.00 0.00 4.45
3149 6963 1.880027 ACTTCGTTTCATTCACCCTGC 59.120 47.619 0.00 0.00 0.00 4.85
3229 7045 1.418342 CGTTTCGGCACATACCTCGG 61.418 60.000 0.00 0.00 0.00 4.63
3230 7046 0.108520 GTTTCGGCACATACCTCGGA 60.109 55.000 0.00 0.00 0.00 4.55
3264 7089 2.370281 CGCATCCGCCTTCAGTATAT 57.630 50.000 0.00 0.00 33.11 0.86
3265 7090 1.995484 CGCATCCGCCTTCAGTATATG 59.005 52.381 0.00 0.00 33.11 1.78
3270 7129 5.403246 CATCCGCCTTCAGTATATGTACTC 58.597 45.833 0.00 0.00 39.12 2.59
3291 7150 4.331968 TCCATGTATTTGTTCCACCACTC 58.668 43.478 0.00 0.00 0.00 3.51
3292 7151 4.078537 CCATGTATTTGTTCCACCACTCA 58.921 43.478 0.00 0.00 0.00 3.41
3295 7154 4.979335 TGTATTTGTTCCACCACTCATCA 58.021 39.130 0.00 0.00 0.00 3.07
3310 7169 2.735663 CTCATCATAAGCGCTGACCATC 59.264 50.000 12.58 0.00 0.00 3.51
3311 7170 1.802960 CATCATAAGCGCTGACCATCC 59.197 52.381 12.58 0.00 0.00 3.51
3312 7171 0.829990 TCATAAGCGCTGACCATCCA 59.170 50.000 12.58 0.00 0.00 3.41
3313 7172 1.417517 TCATAAGCGCTGACCATCCAT 59.582 47.619 12.58 0.00 0.00 3.41
3314 7173 2.158769 TCATAAGCGCTGACCATCCATT 60.159 45.455 12.58 0.00 0.00 3.16
3337 7196 5.795972 TCATGCATGTCCATTGTTGATTTT 58.204 33.333 25.43 0.00 0.00 1.82
3389 7248 3.616956 CAGGAAGTGCTAGATGGTTCA 57.383 47.619 0.00 0.00 0.00 3.18
3390 7249 4.148128 CAGGAAGTGCTAGATGGTTCAT 57.852 45.455 0.00 0.00 0.00 2.57
3392 7251 3.118112 AGGAAGTGCTAGATGGTTCATGG 60.118 47.826 0.00 0.00 0.00 3.66
3393 7252 3.118261 GGAAGTGCTAGATGGTTCATGGA 60.118 47.826 0.00 0.00 0.00 3.41
3396 7255 4.290093 AGTGCTAGATGGTTCATGGAGTA 58.710 43.478 0.00 0.00 0.00 2.59
3397 7256 4.343526 AGTGCTAGATGGTTCATGGAGTAG 59.656 45.833 0.00 0.00 0.00 2.57
3515 7374 2.233654 CGCGCCAGAGTAGACATGC 61.234 63.158 0.00 0.00 0.00 4.06
3542 7401 7.715249 TGATTAGTTTCTGTTCTGTACAAGCTT 59.285 33.333 0.00 0.00 36.02 3.74
3543 7402 5.741388 AGTTTCTGTTCTGTACAAGCTTG 57.259 39.130 24.84 24.84 36.02 4.01
3544 7403 5.428253 AGTTTCTGTTCTGTACAAGCTTGA 58.572 37.500 32.50 13.49 36.02 3.02
3566 7425 0.950555 TCGATGTGGCTGTTGCTGTC 60.951 55.000 0.00 0.00 39.59 3.51
3567 7426 1.229975 CGATGTGGCTGTTGCTGTCA 61.230 55.000 0.00 0.00 39.59 3.58
3569 7428 0.466007 ATGTGGCTGTTGCTGTCACA 60.466 50.000 13.93 13.93 40.91 3.58
3570 7429 0.466007 TGTGGCTGTTGCTGTCACAT 60.466 50.000 8.88 0.00 35.21 3.21
3571 7430 0.670162 GTGGCTGTTGCTGTCACATT 59.330 50.000 6.00 0.00 39.59 2.71
3572 7431 1.879380 GTGGCTGTTGCTGTCACATTA 59.121 47.619 6.00 0.00 39.59 1.90
3573 7432 1.879380 TGGCTGTTGCTGTCACATTAC 59.121 47.619 0.00 0.00 39.59 1.89
3595 7454 5.454966 ACTTCCCCTAATAAAATCGCCAAT 58.545 37.500 0.00 0.00 0.00 3.16
3615 7474 4.815533 ATTGATGCTCGAGCCTATGTAT 57.184 40.909 33.23 19.36 41.18 2.29
3616 7475 3.857549 TGATGCTCGAGCCTATGTATC 57.142 47.619 33.23 25.93 41.18 2.24
3617 7476 3.425659 TGATGCTCGAGCCTATGTATCT 58.574 45.455 33.23 7.50 41.18 1.98
3618 7477 3.829026 TGATGCTCGAGCCTATGTATCTT 59.171 43.478 33.23 6.14 41.18 2.40
3619 7478 4.281941 TGATGCTCGAGCCTATGTATCTTT 59.718 41.667 33.23 0.00 41.18 2.52
3620 7479 3.982475 TGCTCGAGCCTATGTATCTTTG 58.018 45.455 33.23 0.00 41.18 2.77
3621 7480 2.734079 GCTCGAGCCTATGTATCTTTGC 59.266 50.000 27.22 0.00 34.31 3.68
3622 7481 3.553922 GCTCGAGCCTATGTATCTTTGCT 60.554 47.826 27.22 0.00 34.31 3.91
3623 7482 4.626042 CTCGAGCCTATGTATCTTTGCTT 58.374 43.478 0.00 0.00 0.00 3.91
3624 7483 5.023533 TCGAGCCTATGTATCTTTGCTTT 57.976 39.130 0.00 0.00 0.00 3.51
3625 7484 5.050490 TCGAGCCTATGTATCTTTGCTTTC 58.950 41.667 0.00 0.00 0.00 2.62
3626 7485 5.053145 CGAGCCTATGTATCTTTGCTTTCT 58.947 41.667 0.00 0.00 0.00 2.52
3627 7486 5.176590 CGAGCCTATGTATCTTTGCTTTCTC 59.823 44.000 0.00 0.00 0.00 2.87
3628 7487 5.372373 AGCCTATGTATCTTTGCTTTCTCC 58.628 41.667 0.00 0.00 0.00 3.71
3629 7488 4.517075 GCCTATGTATCTTTGCTTTCTCCC 59.483 45.833 0.00 0.00 0.00 4.30
3630 7489 5.684704 CCTATGTATCTTTGCTTTCTCCCA 58.315 41.667 0.00 0.00 0.00 4.37
3631 7490 6.122277 CCTATGTATCTTTGCTTTCTCCCAA 58.878 40.000 0.00 0.00 0.00 4.12
3632 7491 6.261826 CCTATGTATCTTTGCTTTCTCCCAAG 59.738 42.308 0.00 0.00 0.00 3.61
3633 7492 4.335416 TGTATCTTTGCTTTCTCCCAAGG 58.665 43.478 0.00 0.00 0.00 3.61
3634 7493 3.814504 ATCTTTGCTTTCTCCCAAGGA 57.185 42.857 0.00 0.00 32.70 3.36
3635 7494 2.863809 TCTTTGCTTTCTCCCAAGGAC 58.136 47.619 0.00 0.00 0.00 3.85
3636 7495 2.443255 TCTTTGCTTTCTCCCAAGGACT 59.557 45.455 0.00 0.00 0.00 3.85
3637 7496 2.276732 TTGCTTTCTCCCAAGGACTG 57.723 50.000 0.00 0.00 0.00 3.51
3638 7497 1.434188 TGCTTTCTCCCAAGGACTGA 58.566 50.000 0.00 0.00 0.00 3.41
3639 7498 1.774254 TGCTTTCTCCCAAGGACTGAA 59.226 47.619 0.00 0.00 0.00 3.02
3640 7499 2.174639 TGCTTTCTCCCAAGGACTGAAA 59.825 45.455 0.00 0.00 29.45 2.69
3641 7500 3.222603 GCTTTCTCCCAAGGACTGAAAA 58.777 45.455 0.00 0.00 29.63 2.29
3642 7501 3.004839 GCTTTCTCCCAAGGACTGAAAAC 59.995 47.826 0.00 0.00 29.63 2.43
3643 7502 4.464947 CTTTCTCCCAAGGACTGAAAACT 58.535 43.478 0.00 0.00 29.63 2.66
3644 7503 4.519906 TTCTCCCAAGGACTGAAAACTT 57.480 40.909 0.00 0.00 0.00 2.66
3645 7504 4.519906 TCTCCCAAGGACTGAAAACTTT 57.480 40.909 0.00 0.00 0.00 2.66
3646 7505 4.461198 TCTCCCAAGGACTGAAAACTTTC 58.539 43.478 0.00 0.00 37.69 2.62
3647 7506 3.211045 TCCCAAGGACTGAAAACTTTCG 58.789 45.455 0.00 0.00 40.01 3.46
3648 7507 2.287608 CCCAAGGACTGAAAACTTTCGC 60.288 50.000 0.00 0.00 40.01 4.70
3649 7508 2.287608 CCAAGGACTGAAAACTTTCGCC 60.288 50.000 0.00 0.44 40.01 5.54
3650 7509 2.618709 CAAGGACTGAAAACTTTCGCCT 59.381 45.455 5.66 5.66 40.01 5.52
3651 7510 2.932261 AGGACTGAAAACTTTCGCCTT 58.068 42.857 5.66 0.00 40.01 4.35
3652 7511 3.288092 AGGACTGAAAACTTTCGCCTTT 58.712 40.909 5.66 0.00 40.01 3.11
3653 7512 4.457466 AGGACTGAAAACTTTCGCCTTTA 58.543 39.130 5.66 0.00 40.01 1.85
3654 7513 5.070685 AGGACTGAAAACTTTCGCCTTTAT 58.929 37.500 5.66 0.00 40.01 1.40
3655 7514 5.535030 AGGACTGAAAACTTTCGCCTTTATT 59.465 36.000 5.66 0.00 40.01 1.40
3656 7515 5.629435 GGACTGAAAACTTTCGCCTTTATTG 59.371 40.000 0.00 0.00 40.01 1.90
3657 7516 6.385649 ACTGAAAACTTTCGCCTTTATTGA 57.614 33.333 0.00 0.00 40.01 2.57
3658 7517 6.206498 ACTGAAAACTTTCGCCTTTATTGAC 58.794 36.000 0.00 0.00 40.01 3.18
3659 7518 6.137794 TGAAAACTTTCGCCTTTATTGACA 57.862 33.333 0.00 0.00 40.01 3.58
3660 7519 6.205784 TGAAAACTTTCGCCTTTATTGACAG 58.794 36.000 0.00 0.00 40.01 3.51
3661 7520 6.038825 TGAAAACTTTCGCCTTTATTGACAGA 59.961 34.615 0.00 0.00 40.01 3.41
3662 7521 6.385649 AAACTTTCGCCTTTATTGACAGAA 57.614 33.333 0.00 0.00 0.00 3.02
3663 7522 5.613358 ACTTTCGCCTTTATTGACAGAAG 57.387 39.130 0.00 0.00 0.00 2.85
3664 7523 5.305585 ACTTTCGCCTTTATTGACAGAAGA 58.694 37.500 0.00 0.00 0.00 2.87
3665 7524 5.409826 ACTTTCGCCTTTATTGACAGAAGAG 59.590 40.000 0.00 0.00 0.00 2.85
3666 7525 4.801330 TCGCCTTTATTGACAGAAGAGA 57.199 40.909 0.00 0.00 0.00 3.10
3667 7526 4.748892 TCGCCTTTATTGACAGAAGAGAG 58.251 43.478 0.00 0.00 0.00 3.20
3668 7527 4.462834 TCGCCTTTATTGACAGAAGAGAGA 59.537 41.667 0.00 0.00 0.00 3.10
3669 7528 4.803088 CGCCTTTATTGACAGAAGAGAGAG 59.197 45.833 0.00 0.00 0.00 3.20
3670 7529 5.115480 GCCTTTATTGACAGAAGAGAGAGG 58.885 45.833 0.00 0.00 0.00 3.69
3671 7530 5.337975 GCCTTTATTGACAGAAGAGAGAGGT 60.338 44.000 0.00 0.00 0.00 3.85
3672 7531 6.706295 CCTTTATTGACAGAAGAGAGAGGTT 58.294 40.000 0.00 0.00 0.00 3.50
3673 7532 6.593382 CCTTTATTGACAGAAGAGAGAGGTTG 59.407 42.308 0.00 0.00 0.00 3.77
3674 7533 4.550076 ATTGACAGAAGAGAGAGGTTGG 57.450 45.455 0.00 0.00 0.00 3.77
3675 7534 2.964209 TGACAGAAGAGAGAGGTTGGT 58.036 47.619 0.00 0.00 0.00 3.67
3676 7535 4.114015 TGACAGAAGAGAGAGGTTGGTA 57.886 45.455 0.00 0.00 0.00 3.25
3677 7536 4.480115 TGACAGAAGAGAGAGGTTGGTAA 58.520 43.478 0.00 0.00 0.00 2.85
3678 7537 4.899457 TGACAGAAGAGAGAGGTTGGTAAA 59.101 41.667 0.00 0.00 0.00 2.01
3679 7538 5.365605 TGACAGAAGAGAGAGGTTGGTAAAA 59.634 40.000 0.00 0.00 0.00 1.52
3680 7539 5.612351 ACAGAAGAGAGAGGTTGGTAAAAC 58.388 41.667 0.00 0.00 0.00 2.43
3681 7540 5.367060 ACAGAAGAGAGAGGTTGGTAAAACT 59.633 40.000 0.00 0.00 35.45 2.66
3682 7541 6.126739 ACAGAAGAGAGAGGTTGGTAAAACTT 60.127 38.462 0.00 0.00 31.79 2.66
3683 7542 6.768381 CAGAAGAGAGAGGTTGGTAAAACTTT 59.232 38.462 0.00 0.00 31.79 2.66
3684 7543 6.993308 AGAAGAGAGAGGTTGGTAAAACTTTC 59.007 38.462 0.00 0.00 35.03 2.62
3685 7544 6.502074 AGAGAGAGGTTGGTAAAACTTTCT 57.498 37.500 0.00 0.00 44.92 2.52
3686 7545 7.613551 AGAGAGAGGTTGGTAAAACTTTCTA 57.386 36.000 0.00 0.00 42.92 2.10
3687 7546 8.208575 AGAGAGAGGTTGGTAAAACTTTCTAT 57.791 34.615 0.00 0.00 42.92 1.98
3688 7547 8.097662 AGAGAGAGGTTGGTAAAACTTTCTATG 58.902 37.037 0.00 0.00 42.92 2.23
3689 7548 7.974504 AGAGAGGTTGGTAAAACTTTCTATGA 58.025 34.615 0.00 0.00 41.51 2.15
3690 7549 8.437575 AGAGAGGTTGGTAAAACTTTCTATGAA 58.562 33.333 0.00 0.00 41.51 2.57
3691 7550 8.622948 AGAGGTTGGTAAAACTTTCTATGAAG 57.377 34.615 0.00 0.00 31.79 3.02
3692 7551 8.218488 AGAGGTTGGTAAAACTTTCTATGAAGT 58.782 33.333 0.00 0.00 41.44 3.01
3693 7552 9.498176 GAGGTTGGTAAAACTTTCTATGAAGTA 57.502 33.333 0.00 0.00 38.86 2.24
3703 7562 8.600449 AACTTTCTATGAAGTATATGAGCTGC 57.400 34.615 0.00 0.00 38.86 5.25
3704 7563 6.865726 ACTTTCTATGAAGTATATGAGCTGCG 59.134 38.462 0.00 0.00 38.06 5.18
3705 7564 5.316327 TCTATGAAGTATATGAGCTGCGG 57.684 43.478 0.00 0.00 0.00 5.69
3706 7565 2.820059 TGAAGTATATGAGCTGCGGG 57.180 50.000 0.00 0.00 0.00 6.13
3707 7566 1.344438 TGAAGTATATGAGCTGCGGGG 59.656 52.381 0.00 0.00 0.00 5.73
3708 7567 0.687354 AAGTATATGAGCTGCGGGGG 59.313 55.000 0.00 0.00 0.00 5.40
3722 7581 4.716003 GGGGGTTTCCGAGTTGAG 57.284 61.111 0.00 0.00 36.01 3.02
3723 7582 2.063774 GGGGGTTTCCGAGTTGAGA 58.936 57.895 0.00 0.00 36.01 3.27
3724 7583 0.399075 GGGGGTTTCCGAGTTGAGAA 59.601 55.000 0.00 0.00 36.01 2.87
3725 7584 1.202842 GGGGGTTTCCGAGTTGAGAAA 60.203 52.381 0.00 0.00 36.01 2.52
3726 7585 2.578786 GGGGTTTCCGAGTTGAGAAAA 58.421 47.619 0.00 0.00 33.98 2.29
3727 7586 2.552743 GGGGTTTCCGAGTTGAGAAAAG 59.447 50.000 0.00 0.00 33.98 2.27
3728 7587 3.211865 GGGTTTCCGAGTTGAGAAAAGT 58.788 45.455 0.00 0.00 33.98 2.66
3729 7588 4.383173 GGGTTTCCGAGTTGAGAAAAGTA 58.617 43.478 0.00 0.00 33.98 2.24
3730 7589 5.001874 GGGTTTCCGAGTTGAGAAAAGTAT 58.998 41.667 0.00 0.00 33.98 2.12
3731 7590 5.106673 GGGTTTCCGAGTTGAGAAAAGTATG 60.107 44.000 0.00 0.00 33.98 2.39
3732 7591 5.469084 GGTTTCCGAGTTGAGAAAAGTATGT 59.531 40.000 0.00 0.00 33.98 2.29
3733 7592 6.017357 GGTTTCCGAGTTGAGAAAAGTATGTT 60.017 38.462 0.00 0.00 33.98 2.71
3734 7593 7.415229 GTTTCCGAGTTGAGAAAAGTATGTTT 58.585 34.615 0.00 0.00 33.98 2.83
3859 7748 1.596934 GGATCCGACCACTCTTGCA 59.403 57.895 0.00 0.00 0.00 4.08
4043 8659 2.238395 AGATTTCTGCTTGGGGAGAGTC 59.762 50.000 0.00 0.00 40.83 3.36
4070 8918 3.444805 GCACGCGGAGGAGAGACT 61.445 66.667 12.47 0.00 0.00 3.24
4129 9137 1.671054 CGAACCGGCATGTTGGAGT 60.671 57.895 0.00 0.36 0.00 3.85
4251 9376 4.450976 GGGCATTGTCCTTGAAAAGTTTT 58.549 39.130 0.00 0.00 44.25 2.43
4252 9377 4.511454 GGGCATTGTCCTTGAAAAGTTTTC 59.489 41.667 19.44 19.44 44.25 2.29
4369 9800 0.699399 TTCTCAGTCGGAGGAGGAGT 59.301 55.000 0.00 0.00 44.19 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.547054 TGTGACAGGTTTCCTTACGTT 57.453 42.857 0.00 0.00 0.00 3.99
1 2 3.660865 GATGTGACAGGTTTCCTTACGT 58.339 45.455 0.00 0.00 0.00 3.57
2 3 2.666508 CGATGTGACAGGTTTCCTTACG 59.333 50.000 0.00 0.00 0.00 3.18
3 4 3.921677 TCGATGTGACAGGTTTCCTTAC 58.078 45.455 0.00 0.00 0.00 2.34
53 56 1.686052 CTATGACTGGTCTCCCTGAGC 59.314 57.143 2.38 0.00 43.03 4.26
96 99 6.665465 CATGTCACTATGCATAATTGGTCAG 58.335 40.000 8.00 0.00 0.00 3.51
133 136 4.599047 TTTGTGATGGAAATTGTGGACC 57.401 40.909 0.00 0.00 0.00 4.46
200 203 2.142356 TATTGTCGGGGTCCTTCGTA 57.858 50.000 5.38 0.00 0.00 3.43
212 215 6.037062 TGCAACTGATAGTTCCAATATTGTCG 59.963 38.462 14.25 0.28 36.03 4.35
214 217 7.112122 TCTGCAACTGATAGTTCCAATATTGT 58.888 34.615 14.25 0.00 36.03 2.71
229 232 5.771153 TGAATTTGATGTTCTGCAACTGA 57.229 34.783 0.00 0.00 33.17 3.41
248 251 8.573035 GTTATCCATAGTTGGTCAAGTTTTGAA 58.427 33.333 0.00 0.00 44.06 2.69
275 332 7.482169 TTGTGGGTTAAATAAATGGCATGTA 57.518 32.000 0.00 0.00 0.00 2.29
317 374 7.784470 AACTCCTTACATAGAACACTTCTCT 57.216 36.000 0.00 0.00 41.14 3.10
369 426 1.659098 CGAGCCTACAATTCCGACAAC 59.341 52.381 0.00 0.00 0.00 3.32
393 450 9.722184 AGTAGGTAACCTTTTTCTCTTTCATAC 57.278 33.333 0.00 0.00 34.61 2.39
408 465 1.065418 GCCATGCACAGTAGGTAACCT 60.065 52.381 0.00 0.00 37.71 3.50
472 1296 7.607607 TGCAACTCTATCTATGTCAAACATTGT 59.392 33.333 0.00 0.00 39.88 2.71
543 1370 9.770097 TGCCAAATATGTTTTTCATTTACTTCA 57.230 25.926 0.00 0.00 37.91 3.02
575 1405 7.589395 TGATGCGTTATGACTGTAACAAAAAT 58.411 30.769 0.00 0.00 34.90 1.82
576 1406 6.960468 TGATGCGTTATGACTGTAACAAAAA 58.040 32.000 0.00 0.00 34.90 1.94
581 1411 5.983720 AGGTATGATGCGTTATGACTGTAAC 59.016 40.000 0.00 0.00 0.00 2.50
591 1423 5.801531 AGGACATAAGGTATGATGCGTTA 57.198 39.130 2.34 0.00 39.45 3.18
770 1695 4.043812 AGGGCCTTAAGATATGATGCATGT 59.956 41.667 2.46 0.00 0.00 3.21
790 1715 6.174720 TGGTCACTAATGCTAAAGATAGGG 57.825 41.667 0.00 0.00 0.00 3.53
792 1717 7.227512 CCCTTTGGTCACTAATGCTAAAGATAG 59.772 40.741 6.20 0.00 34.95 2.08
809 1738 2.915137 TTTGGCGCCCCTTTGGTC 60.915 61.111 26.77 0.00 36.04 4.02
824 1753 2.433004 GGGGTACGTGCCACCTTT 59.567 61.111 24.62 0.00 36.25 3.11
825 1754 2.850130 TGGGGTACGTGCCACCTT 60.850 61.111 23.01 0.00 36.25 3.50
826 1755 3.633116 GTGGGGTACGTGCCACCT 61.633 66.667 23.01 0.00 33.08 4.00
845 1774 2.446435 GATGGTGGTGTGCCTTGTAAT 58.554 47.619 0.00 0.00 35.27 1.89
870 1799 3.556423 GGGTTTTAAAGAGACGCAGAGGA 60.556 47.826 1.82 0.00 0.00 3.71
912 1844 1.814169 GGGTTCCGCTTCGATGGAC 60.814 63.158 1.40 0.00 32.95 4.02
925 1857 1.670811 CGGCAGATTGTATGTGGGTTC 59.329 52.381 0.00 0.00 0.00 3.62
945 1878 3.426568 GAAGTGGGCGAGCACAGC 61.427 66.667 0.00 0.00 0.00 4.40
947 1880 4.329545 GGGAAGTGGGCGAGCACA 62.330 66.667 0.00 0.00 0.00 4.57
990 1923 0.397957 TGGGCGCCATAGGTCTTAGA 60.398 55.000 30.85 0.00 0.00 2.10
993 1926 1.995626 AGTGGGCGCCATAGGTCTT 60.996 57.895 30.85 0.83 35.28 3.01
995 1928 2.203070 CAGTGGGCGCCATAGGTC 60.203 66.667 30.85 10.31 35.28 3.85
1011 1944 1.489481 CCAGTAGTGATCCTGAGGCA 58.511 55.000 0.00 0.00 0.00 4.75
1014 1947 0.755686 GGGCCAGTAGTGATCCTGAG 59.244 60.000 4.39 0.00 0.00 3.35
1015 1948 0.339859 AGGGCCAGTAGTGATCCTGA 59.660 55.000 6.18 0.00 0.00 3.86
1017 1950 0.043334 ACAGGGCCAGTAGTGATCCT 59.957 55.000 6.18 2.61 0.00 3.24
1052 1985 2.047655 GGGTCGACGCAATGGTCA 60.048 61.111 25.93 0.00 36.73 4.02
1057 1990 1.741770 GCAGAAGGGTCGACGCAAT 60.742 57.895 31.03 20.60 0.00 3.56
1176 2110 1.071071 TGAAACCAGGTACAAGGGTCG 59.929 52.381 0.00 0.00 32.67 4.79
1185 2119 3.146066 GCAAGTGATGTGAAACCAGGTA 58.854 45.455 0.00 0.00 34.36 3.08
1194 2128 0.666274 GGTCGTCGCAAGTGATGTGA 60.666 55.000 3.09 0.00 46.03 3.58
1264 2198 5.393135 GGACGGAATCAGAATCTCGCATATA 60.393 44.000 0.00 0.00 0.00 0.86
1265 2199 4.489810 GACGGAATCAGAATCTCGCATAT 58.510 43.478 0.00 0.00 0.00 1.78
1266 2200 3.305403 GGACGGAATCAGAATCTCGCATA 60.305 47.826 0.00 0.00 0.00 3.14
1267 2201 2.546795 GGACGGAATCAGAATCTCGCAT 60.547 50.000 0.00 0.00 0.00 4.73
1268 2202 1.202417 GGACGGAATCAGAATCTCGCA 60.202 52.381 0.00 0.00 0.00 5.10
1289 2223 1.276421 GAGTACCAGAGGCACACACAT 59.724 52.381 0.00 0.00 0.00 3.21
1294 2228 1.612442 GGGGAGTACCAGAGGCACA 60.612 63.158 0.00 0.00 42.91 4.57
1302 2236 1.129917 TTGAAACACGGGGAGTACCA 58.870 50.000 0.00 0.00 42.91 3.25
1391 2329 9.995003 ATGAAGCAAATTTTGTTTTATAGGTGA 57.005 25.926 11.76 0.00 34.10 4.02
1476 2414 9.928236 ATAGTTAAATCGTCGACTTAGAACTAC 57.072 33.333 19.88 1.90 31.67 2.73
1593 2534 6.019801 CGTAGTTTTAGGTCATCGATTTGAGG 60.020 42.308 0.00 0.00 0.00 3.86
1602 2543 6.812160 AGTCATTCACGTAGTTTTAGGTCATC 59.188 38.462 0.00 0.00 41.61 2.92
1619 2560 6.799191 TCCGTCCAGGTGAATAAGTCATTCA 61.799 44.000 0.00 0.00 43.86 2.57
1637 2578 9.420551 CAAAAATCTATTATACTACCTCCGTCC 57.579 37.037 0.00 0.00 0.00 4.79
1728 2670 3.007182 AGCACTTCCACCATTCCAAAATG 59.993 43.478 0.00 0.00 41.69 2.32
1764 2709 3.860754 GCCAATAGTTTGAACAAGGGTGC 60.861 47.826 0.00 0.00 34.60 5.01
1968 2941 0.747283 GCATCTGCTCCACTCCAAGG 60.747 60.000 0.00 0.00 38.21 3.61
2047 3028 5.705609 AAATTCAAACGACCAAGCAGTAT 57.294 34.783 0.00 0.00 0.00 2.12
2100 5231 5.925969 CCGTCCAACTATTTGCAATTTCTTT 59.074 36.000 0.00 0.00 0.00 2.52
2106 5237 4.016444 ACATCCGTCCAACTATTTGCAAT 58.984 39.130 0.00 0.00 0.00 3.56
2110 5241 6.737254 AAACTACATCCGTCCAACTATTTG 57.263 37.500 0.00 0.00 0.00 2.32
2203 5717 1.079127 CTGTGTCATCCCACGACCC 60.079 63.158 0.00 0.00 38.20 4.46
2368 5882 9.490379 GGAGTACAAGTTTTCTCATTCTTTAGA 57.510 33.333 0.00 0.00 0.00 2.10
2405 5919 8.341903 CGCCCAAAAACTTCATCTAAAATTTTT 58.658 29.630 9.06 0.00 30.82 1.94
2408 5922 6.754193 TCGCCCAAAAACTTCATCTAAAATT 58.246 32.000 0.00 0.00 0.00 1.82
2410 5924 5.776173 TCGCCCAAAAACTTCATCTAAAA 57.224 34.783 0.00 0.00 0.00 1.52
2411 5925 5.776173 TTCGCCCAAAAACTTCATCTAAA 57.224 34.783 0.00 0.00 0.00 1.85
2412 5926 5.710099 AGATTCGCCCAAAAACTTCATCTAA 59.290 36.000 0.00 0.00 0.00 2.10
2413 5927 5.123820 CAGATTCGCCCAAAAACTTCATCTA 59.876 40.000 0.00 0.00 0.00 1.98
2415 5929 4.168760 CAGATTCGCCCAAAAACTTCATC 58.831 43.478 0.00 0.00 0.00 2.92
2458 6039 4.020218 CAGGTTCATAGTCTTCAGGTCCAA 60.020 45.833 0.00 0.00 0.00 3.53
2526 6107 6.316890 GGAATAAACTACTATTGAACCCGCAA 59.683 38.462 0.00 0.00 0.00 4.85
2588 6222 9.444600 GGTCTTCTCTCTCGATTATAACTCTAT 57.555 37.037 0.00 0.00 0.00 1.98
2589 6223 8.653191 AGGTCTTCTCTCTCGATTATAACTCTA 58.347 37.037 0.00 0.00 0.00 2.43
2591 6225 7.094933 GGAGGTCTTCTCTCTCGATTATAACTC 60.095 44.444 0.00 0.00 42.10 3.01
2593 6227 6.713450 AGGAGGTCTTCTCTCTCGATTATAAC 59.287 42.308 0.00 0.00 42.10 1.89
2594 6228 6.843752 AGGAGGTCTTCTCTCTCGATTATAA 58.156 40.000 0.00 0.00 42.10 0.98
2595 6229 6.043358 TGAGGAGGTCTTCTCTCTCGATTATA 59.957 42.308 7.69 0.00 42.10 0.98
2597 6231 4.164413 TGAGGAGGTCTTCTCTCTCGATTA 59.836 45.833 7.69 0.00 42.10 1.75
2598 6232 3.053991 TGAGGAGGTCTTCTCTCTCGATT 60.054 47.826 7.69 0.00 42.10 3.34
2599 6233 2.507886 TGAGGAGGTCTTCTCTCTCGAT 59.492 50.000 7.69 0.00 42.10 3.59
2600 6234 1.909986 TGAGGAGGTCTTCTCTCTCGA 59.090 52.381 7.69 0.00 42.10 4.04
2601 6235 2.411628 TGAGGAGGTCTTCTCTCTCG 57.588 55.000 7.69 0.00 42.10 4.04
2602 6236 5.197451 TGTATTGAGGAGGTCTTCTCTCTC 58.803 45.833 7.69 0.00 42.10 3.20
2603 6237 5.199982 TGTATTGAGGAGGTCTTCTCTCT 57.800 43.478 7.69 0.00 42.10 3.10
2604 6238 6.279882 CAATGTATTGAGGAGGTCTTCTCTC 58.720 44.000 7.69 2.28 39.94 3.20
2606 6240 5.363939 CCAATGTATTGAGGAGGTCTTCTC 58.636 45.833 6.18 0.00 40.14 2.87
2609 6243 3.203040 CCCCAATGTATTGAGGAGGTCTT 59.797 47.826 6.18 0.00 37.83 3.01
2610 6244 2.780010 CCCCAATGTATTGAGGAGGTCT 59.220 50.000 6.18 0.00 37.83 3.85
2611 6245 2.158608 CCCCCAATGTATTGAGGAGGTC 60.159 54.545 6.71 0.00 37.83 3.85
2613 6247 2.664402 CCCCCAATGTATTGAGGAGG 57.336 55.000 6.71 6.17 37.83 4.30
2629 6263 2.997315 GGCTTGAAAGTGGCCCCC 60.997 66.667 0.00 0.00 39.96 5.40
2630 6264 2.203625 TGGCTTGAAAGTGGCCCC 60.204 61.111 0.00 0.00 44.71 5.80
2631 6265 1.832167 TGTGGCTTGAAAGTGGCCC 60.832 57.895 0.00 0.00 44.71 5.80
2632 6266 1.363807 GTGTGGCTTGAAAGTGGCC 59.636 57.895 0.00 0.00 45.45 5.36
2633 6267 0.031178 CTGTGTGGCTTGAAAGTGGC 59.969 55.000 0.00 0.00 0.00 5.01
2635 6269 1.027357 AGCTGTGTGGCTTGAAAGTG 58.973 50.000 0.00 0.00 39.86 3.16
2637 6271 1.027357 ACAGCTGTGTGGCTTGAAAG 58.973 50.000 20.97 0.00 41.00 2.62
2638 6272 3.189568 ACAGCTGTGTGGCTTGAAA 57.810 47.368 20.97 0.00 41.00 2.69
2647 6281 0.541392 TGAGTGAACCACAGCTGTGT 59.459 50.000 37.55 24.98 44.21 3.72
2648 6282 1.202568 TCTGAGTGAACCACAGCTGTG 60.203 52.381 35.15 35.15 45.23 3.66
2649 6283 1.123077 TCTGAGTGAACCACAGCTGT 58.877 50.000 15.25 15.25 36.74 4.40
2660 6294 5.530171 GGTATGGTATAGTCGTTCTGAGTGA 59.470 44.000 0.00 0.00 0.00 3.41
2661 6295 5.298527 TGGTATGGTATAGTCGTTCTGAGTG 59.701 44.000 0.00 0.00 0.00 3.51
2662 6296 5.443283 TGGTATGGTATAGTCGTTCTGAGT 58.557 41.667 0.00 0.00 0.00 3.41
2663 6297 5.763698 TCTGGTATGGTATAGTCGTTCTGAG 59.236 44.000 0.00 0.00 0.00 3.35
2664 6298 5.530171 GTCTGGTATGGTATAGTCGTTCTGA 59.470 44.000 0.00 0.00 0.00 3.27
2665 6299 5.560375 CGTCTGGTATGGTATAGTCGTTCTG 60.560 48.000 0.00 0.00 0.00 3.02
2666 6300 4.514441 CGTCTGGTATGGTATAGTCGTTCT 59.486 45.833 0.00 0.00 0.00 3.01
2667 6301 4.512944 TCGTCTGGTATGGTATAGTCGTTC 59.487 45.833 0.00 0.00 0.00 3.95
2668 6302 4.454678 TCGTCTGGTATGGTATAGTCGTT 58.545 43.478 0.00 0.00 0.00 3.85
2670 6304 4.201695 CGATCGTCTGGTATGGTATAGTCG 60.202 50.000 7.03 0.00 0.00 4.18
2671 6305 4.094590 CCGATCGTCTGGTATGGTATAGTC 59.905 50.000 15.09 0.00 0.00 2.59
2673 6307 3.181499 GCCGATCGTCTGGTATGGTATAG 60.181 52.174 15.09 0.00 0.00 1.31
2674 6308 2.751259 GCCGATCGTCTGGTATGGTATA 59.249 50.000 15.09 0.00 0.00 1.47
2676 6310 0.956633 GCCGATCGTCTGGTATGGTA 59.043 55.000 15.09 0.00 0.00 3.25
2677 6311 1.040893 TGCCGATCGTCTGGTATGGT 61.041 55.000 15.09 0.00 0.00 3.55
2678 6312 0.104120 TTGCCGATCGTCTGGTATGG 59.896 55.000 15.09 0.00 0.00 2.74
2679 6313 1.202417 AGTTGCCGATCGTCTGGTATG 60.202 52.381 15.09 0.00 0.00 2.39
2680 6314 1.112113 AGTTGCCGATCGTCTGGTAT 58.888 50.000 15.09 0.00 0.00 2.73
2681 6315 0.892755 AAGTTGCCGATCGTCTGGTA 59.107 50.000 15.09 0.00 0.00 3.25
2683 6317 2.004583 TAAAGTTGCCGATCGTCTGG 57.995 50.000 15.09 0.00 0.00 3.86
2686 6320 4.965062 TCAAAATAAAGTTGCCGATCGTC 58.035 39.130 15.09 0.47 0.00 4.20
2687 6321 4.454504 ACTCAAAATAAAGTTGCCGATCGT 59.545 37.500 15.09 0.00 0.00 3.73
2689 6323 5.795441 GTCACTCAAAATAAAGTTGCCGATC 59.205 40.000 0.00 0.00 0.00 3.69
2690 6324 5.473504 AGTCACTCAAAATAAAGTTGCCGAT 59.526 36.000 0.00 0.00 0.00 4.18
2691 6325 4.819630 AGTCACTCAAAATAAAGTTGCCGA 59.180 37.500 0.00 0.00 0.00 5.54
2692 6326 4.911610 CAGTCACTCAAAATAAAGTTGCCG 59.088 41.667 0.00 0.00 0.00 5.69
2693 6327 4.681483 GCAGTCACTCAAAATAAAGTTGCC 59.319 41.667 0.00 0.00 0.00 4.52
2695 6329 7.992180 AAAGCAGTCACTCAAAATAAAGTTG 57.008 32.000 0.00 0.00 0.00 3.16
2721 6355 3.136443 AGTCACTTCACATGTTCCCTCAA 59.864 43.478 0.00 0.00 0.00 3.02
2729 6363 2.158769 TCCAAGCAGTCACTTCACATGT 60.159 45.455 0.00 0.00 0.00 3.21
2730 6364 2.483106 CTCCAAGCAGTCACTTCACATG 59.517 50.000 0.00 0.00 0.00 3.21
2731 6365 2.775890 CTCCAAGCAGTCACTTCACAT 58.224 47.619 0.00 0.00 0.00 3.21
2751 6385 3.571571 GGAAATACAAAAAGGACGGTGC 58.428 45.455 0.00 0.00 0.00 5.01
2772 6406 4.569162 TCCAGTTAAAATTAGATGCGTCCG 59.431 41.667 1.23 0.00 0.00 4.79
2810 6450 6.015772 GGCCAAGGTCTCTGTTAAAACAAATA 60.016 38.462 0.00 0.00 38.66 1.40
2839 6545 2.776370 TAGCGGTCCGGACAGGTTCT 62.776 60.000 37.40 25.74 41.99 3.01
2908 6721 4.799255 GCAGAAATAAACTGGGTTGGGTTG 60.799 45.833 0.00 0.00 36.09 3.77
2909 6722 3.323691 GCAGAAATAAACTGGGTTGGGTT 59.676 43.478 0.00 0.00 36.09 4.11
2910 6723 2.897326 GCAGAAATAAACTGGGTTGGGT 59.103 45.455 0.00 0.00 36.09 4.51
2911 6724 2.094752 CGCAGAAATAAACTGGGTTGGG 60.095 50.000 0.00 0.00 41.29 4.12
2912 6725 2.094752 CCGCAGAAATAAACTGGGTTGG 60.095 50.000 0.00 0.00 43.50 3.77
2932 6745 3.061697 GTCGTCATTGGTAAATCGTCACC 59.938 47.826 0.00 0.00 35.24 4.02
2952 6766 2.470821 ACCATTATAGAAGCGTGCGTC 58.529 47.619 0.00 0.00 0.00 5.19
2954 6768 4.684242 TCAATACCATTATAGAAGCGTGCG 59.316 41.667 0.00 0.00 0.00 5.34
2956 6770 6.467723 GGTCAATACCATTATAGAAGCGTG 57.532 41.667 0.00 0.00 45.98 5.34
2970 6784 2.492088 GCCAAAAGAGTGGGTCAATACC 59.508 50.000 0.00 0.00 45.97 2.73
2971 6785 3.153919 TGCCAAAAGAGTGGGTCAATAC 58.846 45.455 0.00 0.00 39.26 1.89
2972 6786 3.517296 TGCCAAAAGAGTGGGTCAATA 57.483 42.857 0.00 0.00 39.26 1.90
2973 6787 2.380064 TGCCAAAAGAGTGGGTCAAT 57.620 45.000 0.00 0.00 39.26 2.57
2974 6788 2.158475 AGATGCCAAAAGAGTGGGTCAA 60.158 45.455 0.00 0.00 39.26 3.18
2975 6789 1.425066 AGATGCCAAAAGAGTGGGTCA 59.575 47.619 0.00 0.00 39.26 4.02
2976 6790 1.815003 CAGATGCCAAAAGAGTGGGTC 59.185 52.381 0.00 0.00 39.26 4.46
2977 6791 1.425066 TCAGATGCCAAAAGAGTGGGT 59.575 47.619 0.00 0.00 39.26 4.51
2978 6792 2.205022 TCAGATGCCAAAAGAGTGGG 57.795 50.000 0.00 0.00 39.26 4.61
2979 6793 3.349927 TGATCAGATGCCAAAAGAGTGG 58.650 45.455 0.00 0.00 42.05 4.00
2986 6800 2.041485 TCCCTGTTGATCAGATGCCAAA 59.959 45.455 0.00 0.00 46.27 3.28
3016 6830 3.670377 GGCCGGTCAACTGGTTGC 61.670 66.667 0.00 4.48 44.34 4.17
3023 6837 2.754254 GGGATTGGGCCGGTCAAC 60.754 66.667 9.07 6.13 0.00 3.18
3026 6840 2.036572 TTTGGGATTGGGCCGGTC 59.963 61.111 1.90 0.00 0.00 4.79
3035 6849 2.608623 CCAACCAGTTCCTTTGGGATT 58.391 47.619 0.00 0.00 41.87 3.01
3057 6871 2.428890 ACGCATTTTTCAGGTTGGACAA 59.571 40.909 0.00 0.00 0.00 3.18
3070 6884 1.160137 GAGCTCCACTCACGCATTTT 58.840 50.000 0.87 0.00 45.49 1.82
3125 6939 2.034053 GGGTGAATGAAACGAAGTGCAA 59.966 45.455 0.00 0.00 45.00 4.08
3141 6955 0.895100 GCAGGTGAAATGCAGGGTGA 60.895 55.000 0.00 0.00 43.31 4.02
3148 6962 1.188863 AATCCCTGCAGGTGAAATGC 58.811 50.000 30.63 0.00 44.11 3.56
3149 6963 3.094572 AGAAATCCCTGCAGGTGAAATG 58.905 45.455 30.63 14.69 36.75 2.32
3229 7045 0.729116 TGCGCTGTACGTACCTACTC 59.271 55.000 22.43 7.82 46.11 2.59
3230 7046 1.332997 GATGCGCTGTACGTACCTACT 59.667 52.381 22.43 3.06 46.11 2.57
3264 7089 5.221945 TGGTGGAACAAATACATGGAGTACA 60.222 40.000 0.00 0.00 44.16 2.90
3265 7090 5.123344 GTGGTGGAACAAATACATGGAGTAC 59.877 44.000 0.00 0.00 44.16 2.73
3270 7129 4.078537 TGAGTGGTGGAACAAATACATGG 58.921 43.478 0.00 0.00 44.16 3.66
3291 7150 1.802960 GGATGGTCAGCGCTTATGATG 59.197 52.381 7.50 0.00 0.00 3.07
3292 7151 1.417517 TGGATGGTCAGCGCTTATGAT 59.582 47.619 7.50 0.00 0.00 2.45
3295 7154 2.158769 TGAATGGATGGTCAGCGCTTAT 60.159 45.455 7.50 0.00 0.00 1.73
3310 7169 3.812156 ACAATGGACATGCATGAATGG 57.188 42.857 32.75 20.42 31.46 3.16
3311 7170 4.749976 TCAACAATGGACATGCATGAATG 58.250 39.130 32.75 22.04 0.00 2.67
3312 7171 5.607939 ATCAACAATGGACATGCATGAAT 57.392 34.783 32.75 18.80 0.00 2.57
3313 7172 5.408880 AATCAACAATGGACATGCATGAA 57.591 34.783 32.75 17.41 0.00 2.57
3314 7173 5.408880 AAATCAACAATGGACATGCATGA 57.591 34.783 32.75 11.53 0.00 3.07
3371 7230 3.118261 TCCATGAACCATCTAGCACTTCC 60.118 47.826 0.00 0.00 0.00 3.46
3386 7245 4.890158 TTTCACTCAGCTACTCCATGAA 57.110 40.909 0.00 0.00 0.00 2.57
3387 7246 6.544928 TTATTTCACTCAGCTACTCCATGA 57.455 37.500 0.00 0.00 0.00 3.07
3389 7248 6.820656 CAGTTTATTTCACTCAGCTACTCCAT 59.179 38.462 0.00 0.00 0.00 3.41
3390 7249 6.166279 CAGTTTATTTCACTCAGCTACTCCA 58.834 40.000 0.00 0.00 0.00 3.86
3392 7251 6.091441 CACCAGTTTATTTCACTCAGCTACTC 59.909 42.308 0.00 0.00 0.00 2.59
3393 7252 5.934625 CACCAGTTTATTTCACTCAGCTACT 59.065 40.000 0.00 0.00 0.00 2.57
3396 7255 4.074970 CCACCAGTTTATTTCACTCAGCT 58.925 43.478 0.00 0.00 0.00 4.24
3397 7256 3.821033 ACCACCAGTTTATTTCACTCAGC 59.179 43.478 0.00 0.00 0.00 4.26
3515 7374 7.386299 AGCTTGTACAGAACAGAAACTAATCAG 59.614 37.037 0.00 0.00 39.87 2.90
3542 7401 2.008543 GCAACAGCCACATCGATCTCA 61.009 52.381 0.00 0.00 0.00 3.27
3543 7402 0.654683 GCAACAGCCACATCGATCTC 59.345 55.000 0.00 0.00 0.00 2.75
3544 7403 0.251354 AGCAACAGCCACATCGATCT 59.749 50.000 0.00 0.00 0.00 2.75
3566 7425 7.360361 GCGATTTTATTAGGGGAAGTAATGTG 58.640 38.462 0.00 0.00 0.00 3.21
3567 7426 6.489022 GGCGATTTTATTAGGGGAAGTAATGT 59.511 38.462 0.00 0.00 0.00 2.71
3569 7428 6.607019 TGGCGATTTTATTAGGGGAAGTAAT 58.393 36.000 0.00 0.00 0.00 1.89
3570 7429 6.003859 TGGCGATTTTATTAGGGGAAGTAA 57.996 37.500 0.00 0.00 0.00 2.24
3571 7430 5.633655 TGGCGATTTTATTAGGGGAAGTA 57.366 39.130 0.00 0.00 0.00 2.24
3572 7431 4.513406 TGGCGATTTTATTAGGGGAAGT 57.487 40.909 0.00 0.00 0.00 3.01
3573 7432 6.040391 TCAATTGGCGATTTTATTAGGGGAAG 59.960 38.462 5.42 0.00 0.00 3.46
3595 7454 3.829026 AGATACATAGGCTCGAGCATCAA 59.171 43.478 36.27 18.25 44.36 2.57
3615 7474 2.443255 AGTCCTTGGGAGAAAGCAAAGA 59.557 45.455 0.00 0.00 29.39 2.52
3616 7475 2.555757 CAGTCCTTGGGAGAAAGCAAAG 59.444 50.000 0.00 0.00 29.39 2.77
3617 7476 2.174639 TCAGTCCTTGGGAGAAAGCAAA 59.825 45.455 0.00 0.00 29.39 3.68
3618 7477 1.774254 TCAGTCCTTGGGAGAAAGCAA 59.226 47.619 0.00 0.00 29.39 3.91
3619 7478 1.434188 TCAGTCCTTGGGAGAAAGCA 58.566 50.000 0.00 0.00 29.39 3.91
3620 7479 2.568623 TTCAGTCCTTGGGAGAAAGC 57.431 50.000 0.00 0.00 29.39 3.51
3621 7480 4.464947 AGTTTTCAGTCCTTGGGAGAAAG 58.535 43.478 0.00 0.00 31.01 2.62
3622 7481 4.519906 AGTTTTCAGTCCTTGGGAGAAA 57.480 40.909 0.00 0.00 29.39 2.52
3623 7482 4.519906 AAGTTTTCAGTCCTTGGGAGAA 57.480 40.909 0.00 0.00 29.39 2.87
3624 7483 4.461198 GAAAGTTTTCAGTCCTTGGGAGA 58.539 43.478 0.00 0.00 37.15 3.71
3625 7484 3.251004 CGAAAGTTTTCAGTCCTTGGGAG 59.749 47.826 5.55 0.00 37.01 4.30
3626 7485 3.211045 CGAAAGTTTTCAGTCCTTGGGA 58.789 45.455 5.55 0.00 37.01 4.37
3627 7486 2.287608 GCGAAAGTTTTCAGTCCTTGGG 60.288 50.000 5.55 0.00 37.01 4.12
3628 7487 2.287608 GGCGAAAGTTTTCAGTCCTTGG 60.288 50.000 5.55 0.00 37.01 3.61
3629 7488 2.618709 AGGCGAAAGTTTTCAGTCCTTG 59.381 45.455 5.55 0.00 37.01 3.61
3630 7489 2.932261 AGGCGAAAGTTTTCAGTCCTT 58.068 42.857 5.55 0.00 37.01 3.36
3631 7490 2.640316 AGGCGAAAGTTTTCAGTCCT 57.360 45.000 5.55 5.23 37.01 3.85
3632 7491 3.710326 AAAGGCGAAAGTTTTCAGTCC 57.290 42.857 5.55 3.33 37.01 3.85
3633 7492 6.359883 GTCAATAAAGGCGAAAGTTTTCAGTC 59.640 38.462 5.55 0.57 37.01 3.51
3634 7493 6.183360 TGTCAATAAAGGCGAAAGTTTTCAGT 60.183 34.615 5.55 0.00 37.01 3.41
3635 7494 6.205784 TGTCAATAAAGGCGAAAGTTTTCAG 58.794 36.000 5.55 0.25 37.01 3.02
3636 7495 6.038825 TCTGTCAATAAAGGCGAAAGTTTTCA 59.961 34.615 5.55 0.00 37.01 2.69
3637 7496 6.435428 TCTGTCAATAAAGGCGAAAGTTTTC 58.565 36.000 0.00 0.00 0.00 2.29
3638 7497 6.385649 TCTGTCAATAAAGGCGAAAGTTTT 57.614 33.333 0.00 0.00 0.00 2.43
3639 7498 6.262273 TCTTCTGTCAATAAAGGCGAAAGTTT 59.738 34.615 0.00 0.00 0.00 2.66
3640 7499 5.763204 TCTTCTGTCAATAAAGGCGAAAGTT 59.237 36.000 0.00 0.00 0.00 2.66
3641 7500 5.305585 TCTTCTGTCAATAAAGGCGAAAGT 58.694 37.500 0.00 0.00 0.00 2.66
3642 7501 5.639506 TCTCTTCTGTCAATAAAGGCGAAAG 59.360 40.000 0.00 0.00 0.00 2.62
3643 7502 5.547465 TCTCTTCTGTCAATAAAGGCGAAA 58.453 37.500 0.00 0.00 0.00 3.46
3644 7503 5.047306 TCTCTCTTCTGTCAATAAAGGCGAA 60.047 40.000 0.00 0.00 0.00 4.70
3645 7504 4.462834 TCTCTCTTCTGTCAATAAAGGCGA 59.537 41.667 0.00 0.00 0.00 5.54
3646 7505 4.748892 TCTCTCTTCTGTCAATAAAGGCG 58.251 43.478 0.00 0.00 0.00 5.52
3647 7506 5.115480 CCTCTCTCTTCTGTCAATAAAGGC 58.885 45.833 0.00 0.00 0.00 4.35
3648 7507 6.293004 ACCTCTCTCTTCTGTCAATAAAGG 57.707 41.667 0.00 0.00 0.00 3.11
3649 7508 6.593382 CCAACCTCTCTCTTCTGTCAATAAAG 59.407 42.308 0.00 0.00 0.00 1.85
3650 7509 6.043243 ACCAACCTCTCTCTTCTGTCAATAAA 59.957 38.462 0.00 0.00 0.00 1.40
3651 7510 5.544176 ACCAACCTCTCTCTTCTGTCAATAA 59.456 40.000 0.00 0.00 0.00 1.40
3652 7511 5.087323 ACCAACCTCTCTCTTCTGTCAATA 58.913 41.667 0.00 0.00 0.00 1.90
3653 7512 3.906846 ACCAACCTCTCTCTTCTGTCAAT 59.093 43.478 0.00 0.00 0.00 2.57
3654 7513 3.309296 ACCAACCTCTCTCTTCTGTCAA 58.691 45.455 0.00 0.00 0.00 3.18
3655 7514 2.964209 ACCAACCTCTCTCTTCTGTCA 58.036 47.619 0.00 0.00 0.00 3.58
3656 7515 5.470047 TTTACCAACCTCTCTCTTCTGTC 57.530 43.478 0.00 0.00 0.00 3.51
3657 7516 5.367060 AGTTTTACCAACCTCTCTCTTCTGT 59.633 40.000 0.00 0.00 0.00 3.41
3658 7517 5.859495 AGTTTTACCAACCTCTCTCTTCTG 58.141 41.667 0.00 0.00 0.00 3.02
3659 7518 6.502074 AAGTTTTACCAACCTCTCTCTTCT 57.498 37.500 0.00 0.00 0.00 2.85
3660 7519 6.993308 AGAAAGTTTTACCAACCTCTCTCTTC 59.007 38.462 0.00 0.00 0.00 2.87
3661 7520 6.901300 AGAAAGTTTTACCAACCTCTCTCTT 58.099 36.000 0.00 0.00 0.00 2.85
3662 7521 6.502074 AGAAAGTTTTACCAACCTCTCTCT 57.498 37.500 0.00 0.00 0.00 3.10
3663 7522 8.095169 TCATAGAAAGTTTTACCAACCTCTCTC 58.905 37.037 0.00 0.00 0.00 3.20
3664 7523 7.974504 TCATAGAAAGTTTTACCAACCTCTCT 58.025 34.615 0.00 0.00 0.00 3.10
3665 7524 8.617290 TTCATAGAAAGTTTTACCAACCTCTC 57.383 34.615 0.00 0.00 0.00 3.20
3666 7525 8.218488 ACTTCATAGAAAGTTTTACCAACCTCT 58.782 33.333 0.00 0.00 36.02 3.69
3667 7526 8.392372 ACTTCATAGAAAGTTTTACCAACCTC 57.608 34.615 0.00 0.00 36.02 3.85
3677 7536 9.050601 GCAGCTCATATACTTCATAGAAAGTTT 57.949 33.333 0.00 0.00 40.01 2.66
3678 7537 7.383572 CGCAGCTCATATACTTCATAGAAAGTT 59.616 37.037 0.00 0.00 40.01 2.66
3679 7538 6.865726 CGCAGCTCATATACTTCATAGAAAGT 59.134 38.462 0.00 0.00 42.10 2.66
3680 7539 6.309980 CCGCAGCTCATATACTTCATAGAAAG 59.690 42.308 0.00 0.00 0.00 2.62
3681 7540 6.159293 CCGCAGCTCATATACTTCATAGAAA 58.841 40.000 0.00 0.00 0.00 2.52
3682 7541 5.336770 CCCGCAGCTCATATACTTCATAGAA 60.337 44.000 0.00 0.00 0.00 2.10
3683 7542 4.158579 CCCGCAGCTCATATACTTCATAGA 59.841 45.833 0.00 0.00 0.00 1.98
3684 7543 4.428209 CCCGCAGCTCATATACTTCATAG 58.572 47.826 0.00 0.00 0.00 2.23
3685 7544 3.195610 CCCCGCAGCTCATATACTTCATA 59.804 47.826 0.00 0.00 0.00 2.15
3686 7545 2.027745 CCCCGCAGCTCATATACTTCAT 60.028 50.000 0.00 0.00 0.00 2.57
3687 7546 1.344438 CCCCGCAGCTCATATACTTCA 59.656 52.381 0.00 0.00 0.00 3.02
3688 7547 1.338200 CCCCCGCAGCTCATATACTTC 60.338 57.143 0.00 0.00 0.00 3.01
3689 7548 0.687354 CCCCCGCAGCTCATATACTT 59.313 55.000 0.00 0.00 0.00 2.24
3690 7549 2.366469 CCCCCGCAGCTCATATACT 58.634 57.895 0.00 0.00 0.00 2.12
3705 7564 0.399075 TTCTCAACTCGGAAACCCCC 59.601 55.000 0.00 0.00 0.00 5.40
3706 7565 2.265589 TTTCTCAACTCGGAAACCCC 57.734 50.000 0.00 0.00 0.00 4.95
3707 7566 3.211865 ACTTTTCTCAACTCGGAAACCC 58.788 45.455 0.00 0.00 32.20 4.11
3708 7567 5.469084 ACATACTTTTCTCAACTCGGAAACC 59.531 40.000 0.00 0.00 32.20 3.27
3709 7568 6.541111 ACATACTTTTCTCAACTCGGAAAC 57.459 37.500 0.00 0.00 32.20 2.78
3710 7569 7.562454 AAACATACTTTTCTCAACTCGGAAA 57.438 32.000 0.00 0.00 0.00 3.13
3711 7570 7.562454 AAAACATACTTTTCTCAACTCGGAA 57.438 32.000 0.00 0.00 0.00 4.30
3712 7571 7.281324 TGAAAAACATACTTTTCTCAACTCGGA 59.719 33.333 9.49 0.00 43.01 4.55
3713 7572 7.414436 TGAAAAACATACTTTTCTCAACTCGG 58.586 34.615 9.49 0.00 43.01 4.63
3721 7580 9.878599 CGACAGTTATGAAAAACATACTTTTCT 57.121 29.630 9.49 0.52 43.01 2.52
3722 7581 9.872757 TCGACAGTTATGAAAAACATACTTTTC 57.127 29.630 2.57 2.57 42.93 2.29
3723 7582 9.659830 GTCGACAGTTATGAAAAACATACTTTT 57.340 29.630 11.55 0.00 40.62 2.27
3724 7583 8.007716 CGTCGACAGTTATGAAAAACATACTTT 58.992 33.333 17.16 0.00 40.62 2.66
3725 7584 7.359765 CCGTCGACAGTTATGAAAAACATACTT 60.360 37.037 17.16 0.00 40.62 2.24
3726 7585 6.090358 CCGTCGACAGTTATGAAAAACATACT 59.910 38.462 17.16 0.00 40.62 2.12
3727 7586 6.238508 CCGTCGACAGTTATGAAAAACATAC 58.761 40.000 17.16 0.00 40.62 2.39
3728 7587 5.349270 CCCGTCGACAGTTATGAAAAACATA 59.651 40.000 17.16 0.00 40.07 2.29
3729 7588 4.153475 CCCGTCGACAGTTATGAAAAACAT 59.847 41.667 17.16 0.00 42.39 2.71
3730 7589 3.495377 CCCGTCGACAGTTATGAAAAACA 59.505 43.478 17.16 0.00 0.00 2.83
3731 7590 3.120442 CCCCGTCGACAGTTATGAAAAAC 60.120 47.826 17.16 0.00 0.00 2.43
3732 7591 3.068560 CCCCGTCGACAGTTATGAAAAA 58.931 45.455 17.16 0.00 0.00 1.94
3733 7592 2.037511 ACCCCGTCGACAGTTATGAAAA 59.962 45.455 17.16 0.00 0.00 2.29
3734 7593 1.619827 ACCCCGTCGACAGTTATGAAA 59.380 47.619 17.16 0.00 0.00 2.69
3859 7748 2.046314 CCCCATCTTCAACGGCGT 60.046 61.111 6.77 6.77 0.00 5.68
4129 9137 0.963856 ACGCCTGTGTCCGATGTCTA 60.964 55.000 0.00 0.00 0.00 2.59
4251 9376 4.779733 GGGCTCTGAGTCCCGGGA 62.780 72.222 22.63 22.63 32.63 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.