Multiple sequence alignment - TraesCS1B01G318700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G318700 chr1B 100.000 5347 0 0 1 5347 543090347 543085001 0.000000e+00 9875.0
1 TraesCS1B01G318700 chr1B 86.325 117 11 4 538 650 543177710 543177595 7.270000e-24 122.0
2 TraesCS1B01G318700 chr1B 79.339 121 8 7 409 517 543177828 543177713 9.610000e-08 69.4
3 TraesCS1B01G318700 chr1B 97.059 34 1 0 4135 4168 543086185 543086152 2.080000e-04 58.4
4 TraesCS1B01G318700 chr1B 97.059 34 1 0 4163 4196 543086213 543086180 2.080000e-04 58.4
5 TraesCS1B01G318700 chr2D 95.276 1249 57 2 1760 3006 630616718 630617966 0.000000e+00 1978.0
6 TraesCS1B01G318700 chr2D 85.950 726 62 19 3017 3723 312029442 312030146 0.000000e+00 739.0
7 TraesCS1B01G318700 chr2D 91.211 512 28 9 1249 1759 312028954 312029449 0.000000e+00 680.0
8 TraesCS1B01G318700 chr2D 96.000 50 2 0 1113 1162 312028905 312028954 1.230000e-11 82.4
9 TraesCS1B01G318700 chr6A 94.720 1250 63 3 1759 3006 2365308 2366556 0.000000e+00 1940.0
10 TraesCS1B01G318700 chr6A 94.329 1252 65 5 1759 3006 609690312 609691561 0.000000e+00 1914.0
11 TraesCS1B01G318700 chr6A 88.004 892 75 14 888 1759 33174454 33173575 0.000000e+00 1026.0
12 TraesCS1B01G318700 chr2B 94.796 1249 56 4 1760 3006 165249188 165247947 0.000000e+00 1938.0
13 TraesCS1B01G318700 chr5B 94.640 1250 65 2 1759 3006 19113372 19112123 0.000000e+00 1936.0
14 TraesCS1B01G318700 chr3B 94.935 1224 59 3 1760 2981 257317426 257316204 0.000000e+00 1914.0
15 TraesCS1B01G318700 chr3B 92.000 300 21 3 1 299 27496985 27496688 8.280000e-113 418.0
16 TraesCS1B01G318700 chr7D 94.711 1229 62 3 1757 2983 604992286 604993513 0.000000e+00 1906.0
17 TraesCS1B01G318700 chr7A 94.160 1250 68 5 1759 3006 609434648 609435894 0.000000e+00 1899.0
18 TraesCS1B01G318700 chr7A 88.045 711 61 16 3019 3723 333610087 333609395 0.000000e+00 821.0
19 TraesCS1B01G318700 chr7A 83.844 588 74 15 915 1496 633798894 633799466 1.690000e-149 540.0
20 TraesCS1B01G318700 chr7A 92.667 300 17 2 1249 1548 61494035 61493741 1.380000e-115 427.0
21 TraesCS1B01G318700 chr7A 89.640 222 20 2 1538 1759 333610300 333610082 4.080000e-71 279.0
22 TraesCS1B01G318700 chr7A 97.872 47 1 0 1116 1162 61494081 61494035 1.230000e-11 82.4
23 TraesCS1B01G318700 chr1D 94.293 1244 64 4 1759 3000 75906423 75907661 0.000000e+00 1897.0
24 TraesCS1B01G318700 chr1D 85.412 1467 119 52 308 1759 403727212 403725826 0.000000e+00 1435.0
25 TraesCS1B01G318700 chr1D 90.418 814 43 13 3771 4581 403725046 403724265 0.000000e+00 1038.0
26 TraesCS1B01G318700 chr1D 89.935 775 40 16 4586 5347 403724219 403723470 0.000000e+00 965.0
27 TraesCS1B01G318700 chr1D 88.830 761 64 11 3019 3771 403725831 403725084 0.000000e+00 915.0
28 TraesCS1B01G318700 chr1A 86.965 1496 112 37 308 1759 499446096 499444640 0.000000e+00 1605.0
29 TraesCS1B01G318700 chr1A 90.559 805 43 15 3771 4569 499443744 499442967 0.000000e+00 1035.0
30 TraesCS1B01G318700 chr1A 87.780 892 77 15 888 1759 584982887 584982008 0.000000e+00 1014.0
31 TraesCS1B01G318700 chr1A 87.990 766 40 27 4588 5347 499442837 499442118 0.000000e+00 857.0
32 TraesCS1B01G318700 chr1A 87.291 779 57 21 3019 3771 499444645 499443883 0.000000e+00 852.0
33 TraesCS1B01G318700 chr3D 86.226 726 59 20 3017 3723 67534792 67535495 0.000000e+00 749.0
34 TraesCS1B01G318700 chr3D 90.430 512 32 10 1249 1759 67534304 67534799 0.000000e+00 658.0
35 TraesCS1B01G318700 chr3D 92.715 302 20 2 1 301 445862634 445862334 8.220000e-118 435.0
36 TraesCS1B01G318700 chr3D 96.000 50 2 0 1113 1162 67534255 67534304 1.230000e-11 82.4
37 TraesCS1B01G318700 chr6D 85.933 718 61 20 3020 3723 454304303 454303612 0.000000e+00 730.0
38 TraesCS1B01G318700 chr6D 91.211 512 28 10 1249 1759 454304794 454304299 0.000000e+00 680.0
39 TraesCS1B01G318700 chr6D 97.872 47 1 0 1116 1162 454304840 454304794 1.230000e-11 82.4
40 TraesCS1B01G318700 chr5D 93.031 287 20 0 1 287 289021674 289021960 2.300000e-113 420.0
41 TraesCS1B01G318700 chr5D 93.031 287 20 0 1 287 289030822 289031108 2.300000e-113 420.0
42 TraesCS1B01G318700 chr5D 91.986 287 23 0 1 287 285477034 285476748 2.320000e-108 403.0
43 TraesCS1B01G318700 chr6B 91.318 311 20 5 1 306 109133191 109133499 8.280000e-113 418.0
44 TraesCS1B01G318700 chr6B 91.148 305 21 2 1 301 691953217 691953519 4.980000e-110 409.0
45 TraesCS1B01G318700 chr4A 91.554 296 23 2 1 296 699178935 699178642 1.790000e-109 407.0
46 TraesCS1B01G318700 chr7B 91.638 287 22 2 1 286 502651725 502651440 3.880000e-106 396.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G318700 chr1B 543085001 543090347 5346 True 9875.000000 9875 100.000000 1 5347 1 chr1B.!!$R1 5346
1 TraesCS1B01G318700 chr2D 630616718 630617966 1248 False 1978.000000 1978 95.276000 1760 3006 1 chr2D.!!$F1 1246
2 TraesCS1B01G318700 chr2D 312028905 312030146 1241 False 500.466667 739 91.053667 1113 3723 3 chr2D.!!$F2 2610
3 TraesCS1B01G318700 chr6A 2365308 2366556 1248 False 1940.000000 1940 94.720000 1759 3006 1 chr6A.!!$F1 1247
4 TraesCS1B01G318700 chr6A 609690312 609691561 1249 False 1914.000000 1914 94.329000 1759 3006 1 chr6A.!!$F2 1247
5 TraesCS1B01G318700 chr6A 33173575 33174454 879 True 1026.000000 1026 88.004000 888 1759 1 chr6A.!!$R1 871
6 TraesCS1B01G318700 chr2B 165247947 165249188 1241 True 1938.000000 1938 94.796000 1760 3006 1 chr2B.!!$R1 1246
7 TraesCS1B01G318700 chr5B 19112123 19113372 1249 True 1936.000000 1936 94.640000 1759 3006 1 chr5B.!!$R1 1247
8 TraesCS1B01G318700 chr3B 257316204 257317426 1222 True 1914.000000 1914 94.935000 1760 2981 1 chr3B.!!$R2 1221
9 TraesCS1B01G318700 chr7D 604992286 604993513 1227 False 1906.000000 1906 94.711000 1757 2983 1 chr7D.!!$F1 1226
10 TraesCS1B01G318700 chr7A 609434648 609435894 1246 False 1899.000000 1899 94.160000 1759 3006 1 chr7A.!!$F1 1247
11 TraesCS1B01G318700 chr7A 333609395 333610300 905 True 550.000000 821 88.842500 1538 3723 2 chr7A.!!$R2 2185
12 TraesCS1B01G318700 chr7A 633798894 633799466 572 False 540.000000 540 83.844000 915 1496 1 chr7A.!!$F2 581
13 TraesCS1B01G318700 chr1D 75906423 75907661 1238 False 1897.000000 1897 94.293000 1759 3000 1 chr1D.!!$F1 1241
14 TraesCS1B01G318700 chr1D 403723470 403727212 3742 True 1088.250000 1435 88.648750 308 5347 4 chr1D.!!$R1 5039
15 TraesCS1B01G318700 chr1A 499442118 499446096 3978 True 1087.250000 1605 88.201250 308 5347 4 chr1A.!!$R2 5039
16 TraesCS1B01G318700 chr1A 584982008 584982887 879 True 1014.000000 1014 87.780000 888 1759 1 chr1A.!!$R1 871
17 TraesCS1B01G318700 chr3D 67534255 67535495 1240 False 496.466667 749 90.885333 1113 3723 3 chr3D.!!$F1 2610
18 TraesCS1B01G318700 chr6D 454303612 454304840 1228 True 497.466667 730 91.672000 1116 3723 3 chr6D.!!$R1 2607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 480 0.323178 GACAGGACACCTACGGGAGA 60.323 60.0 0.0 0.0 36.25 3.71 F
616 635 0.370273 CGACGGGCGAGAAAGAAATG 59.630 55.0 0.0 0.0 44.57 2.32 F
2265 2350 0.031449 TCGACGTGTCAGATGCAACA 59.969 50.0 0.0 0.0 0.00 3.33 F
3026 3112 0.257039 AGGGAGTCCATTCATGTGCC 59.743 55.0 12.3 0.0 34.83 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2269 0.251121 TTGGGCGTGTGTTGATGGAT 60.251 50.0 0.00 0.0 0.0 3.41 R
2609 2695 0.395724 TCCTGCTGCCTCTATCGTCA 60.396 55.0 0.00 0.0 0.0 4.35 R
3993 4272 0.032952 TGTTAGCTTTGAGTCGGCGT 59.967 50.0 6.85 0.0 0.0 5.68 R
4663 5058 0.035458 AGTAGTGCTGGGTGTTCTGC 59.965 55.0 0.00 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.808466 TCTTAAGCGCATCATGTCTCT 57.192 42.857 11.47 0.00 0.00 3.10
24 25 3.711086 TCTTAAGCGCATCATGTCTCTC 58.289 45.455 11.47 0.00 0.00 3.20
25 26 3.382865 TCTTAAGCGCATCATGTCTCTCT 59.617 43.478 11.47 0.00 0.00 3.10
26 27 1.937278 AAGCGCATCATGTCTCTCTG 58.063 50.000 11.47 0.00 0.00 3.35
27 28 0.822811 AGCGCATCATGTCTCTCTGT 59.177 50.000 11.47 0.00 0.00 3.41
28 29 0.928922 GCGCATCATGTCTCTCTGTG 59.071 55.000 0.30 0.00 0.00 3.66
29 30 1.738365 GCGCATCATGTCTCTCTGTGT 60.738 52.381 0.30 0.00 0.00 3.72
30 31 2.480244 GCGCATCATGTCTCTCTGTGTA 60.480 50.000 0.30 0.00 0.00 2.90
31 32 3.798206 GCGCATCATGTCTCTCTGTGTAT 60.798 47.826 0.30 0.00 0.00 2.29
32 33 4.557496 GCGCATCATGTCTCTCTGTGTATA 60.557 45.833 0.30 0.00 0.00 1.47
33 34 5.707931 CGCATCATGTCTCTCTGTGTATAT 58.292 41.667 0.00 0.00 0.00 0.86
34 35 5.799435 CGCATCATGTCTCTCTGTGTATATC 59.201 44.000 0.00 0.00 0.00 1.63
35 36 6.569226 CGCATCATGTCTCTCTGTGTATATCA 60.569 42.308 0.00 0.00 0.00 2.15
36 37 7.321908 GCATCATGTCTCTCTGTGTATATCAT 58.678 38.462 0.00 0.00 0.00 2.45
37 38 7.488792 GCATCATGTCTCTCTGTGTATATCATC 59.511 40.741 0.00 0.00 0.00 2.92
38 39 8.521176 CATCATGTCTCTCTGTGTATATCATCA 58.479 37.037 0.00 0.00 0.00 3.07
39 40 8.469309 TCATGTCTCTCTGTGTATATCATCAA 57.531 34.615 0.00 0.00 0.00 2.57
40 41 8.574737 TCATGTCTCTCTGTGTATATCATCAAG 58.425 37.037 0.00 0.00 0.00 3.02
41 42 7.888250 TGTCTCTCTGTGTATATCATCAAGT 57.112 36.000 0.00 0.00 0.00 3.16
42 43 8.298729 TGTCTCTCTGTGTATATCATCAAGTT 57.701 34.615 0.00 0.00 0.00 2.66
43 44 9.408648 TGTCTCTCTGTGTATATCATCAAGTTA 57.591 33.333 0.00 0.00 0.00 2.24
44 45 9.672086 GTCTCTCTGTGTATATCATCAAGTTAC 57.328 37.037 0.00 0.00 0.00 2.50
45 46 8.851145 TCTCTCTGTGTATATCATCAAGTTACC 58.149 37.037 0.00 0.00 0.00 2.85
46 47 8.768501 TCTCTGTGTATATCATCAAGTTACCT 57.231 34.615 0.00 0.00 0.00 3.08
47 48 9.201989 TCTCTGTGTATATCATCAAGTTACCTT 57.798 33.333 0.00 0.00 0.00 3.50
49 50 8.758829 TCTGTGTATATCATCAAGTTACCTTGT 58.241 33.333 0.00 0.00 46.70 3.16
52 53 9.477484 GTGTATATCATCAAGTTACCTTGTAGG 57.523 37.037 0.00 0.00 46.70 3.18
68 69 7.703058 CCTTGTAGGTGAAATGGATTTTAGT 57.297 36.000 0.00 0.00 0.00 2.24
69 70 8.122472 CCTTGTAGGTGAAATGGATTTTAGTT 57.878 34.615 0.00 0.00 0.00 2.24
70 71 9.238368 CCTTGTAGGTGAAATGGATTTTAGTTA 57.762 33.333 0.00 0.00 0.00 2.24
77 78 9.936759 GGTGAAATGGATTTTAGTTATTTTCCA 57.063 29.630 0.00 0.00 37.63 3.53
131 132 9.502145 TGCGAAATATGACATAATTTTTCTGTC 57.498 29.630 13.97 0.00 39.74 3.51
132 133 8.958043 GCGAAATATGACATAATTTTTCTGTCC 58.042 33.333 13.97 2.48 38.79 4.02
146 147 9.883142 AATTTTTCTGTCCAAAAATACTTGTCA 57.117 25.926 4.72 0.00 42.55 3.58
147 148 8.925161 TTTTTCTGTCCAAAAATACTTGTCAG 57.075 30.769 0.00 0.00 31.65 3.51
148 149 7.873719 TTTCTGTCCAAAAATACTTGTCAGA 57.126 32.000 0.00 0.00 35.53 3.27
149 150 7.496529 TTCTGTCCAAAAATACTTGTCAGAG 57.503 36.000 0.00 0.00 37.05 3.35
150 151 6.826668 TCTGTCCAAAAATACTTGTCAGAGA 58.173 36.000 0.00 0.00 34.01 3.10
151 152 7.279615 TCTGTCCAAAAATACTTGTCAGAGAA 58.720 34.615 0.00 0.00 34.01 2.87
152 153 7.773224 TCTGTCCAAAAATACTTGTCAGAGAAA 59.227 33.333 0.00 0.00 34.01 2.52
153 154 8.463930 TGTCCAAAAATACTTGTCAGAGAAAT 57.536 30.769 0.00 0.00 0.00 2.17
154 155 8.912988 TGTCCAAAAATACTTGTCAGAGAAATT 58.087 29.630 0.00 0.00 0.00 1.82
155 156 9.185192 GTCCAAAAATACTTGTCAGAGAAATTG 57.815 33.333 0.00 0.00 0.00 2.32
156 157 9.130661 TCCAAAAATACTTGTCAGAGAAATTGA 57.869 29.630 0.00 0.00 0.00 2.57
157 158 9.918630 CCAAAAATACTTGTCAGAGAAATTGAT 57.081 29.630 0.00 0.00 0.00 2.57
165 166 9.814899 ACTTGTCAGAGAAATTGATGTATCTAG 57.185 33.333 0.00 0.00 0.00 2.43
167 168 9.809096 TTGTCAGAGAAATTGATGTATCTAGAC 57.191 33.333 0.00 0.00 32.25 2.59
168 169 8.131731 TGTCAGAGAAATTGATGTATCTAGACG 58.868 37.037 0.00 0.00 33.34 4.18
169 170 8.132362 GTCAGAGAAATTGATGTATCTAGACGT 58.868 37.037 0.00 0.00 0.00 4.34
170 171 9.338622 TCAGAGAAATTGATGTATCTAGACGTA 57.661 33.333 0.00 0.00 0.00 3.57
234 235 3.505835 TTTTTCAGGCGGAGGTTGT 57.494 47.368 0.00 0.00 0.00 3.32
235 236 2.642154 TTTTTCAGGCGGAGGTTGTA 57.358 45.000 0.00 0.00 0.00 2.41
236 237 1.886886 TTTTCAGGCGGAGGTTGTAC 58.113 50.000 0.00 0.00 0.00 2.90
237 238 0.759959 TTTCAGGCGGAGGTTGTACA 59.240 50.000 0.00 0.00 0.00 2.90
238 239 0.981183 TTCAGGCGGAGGTTGTACAT 59.019 50.000 0.00 0.00 0.00 2.29
239 240 0.981183 TCAGGCGGAGGTTGTACATT 59.019 50.000 0.00 0.00 0.00 2.71
240 241 2.181125 TCAGGCGGAGGTTGTACATTA 58.819 47.619 0.00 0.00 0.00 1.90
241 242 2.769663 TCAGGCGGAGGTTGTACATTAT 59.230 45.455 0.00 0.00 0.00 1.28
242 243 3.962063 TCAGGCGGAGGTTGTACATTATA 59.038 43.478 0.00 0.00 0.00 0.98
243 244 4.591498 TCAGGCGGAGGTTGTACATTATAT 59.409 41.667 0.00 0.00 0.00 0.86
244 245 4.690748 CAGGCGGAGGTTGTACATTATATG 59.309 45.833 0.00 0.00 0.00 1.78
245 246 3.435671 GGCGGAGGTTGTACATTATATGC 59.564 47.826 0.00 0.00 0.00 3.14
246 247 3.122948 GCGGAGGTTGTACATTATATGCG 59.877 47.826 0.00 0.15 0.00 4.73
247 248 4.304110 CGGAGGTTGTACATTATATGCGT 58.696 43.478 0.00 0.00 0.00 5.24
248 249 5.463286 CGGAGGTTGTACATTATATGCGTA 58.537 41.667 0.00 0.00 0.00 4.42
249 250 5.921976 CGGAGGTTGTACATTATATGCGTAA 59.078 40.000 0.00 0.00 0.00 3.18
250 251 6.588756 CGGAGGTTGTACATTATATGCGTAAT 59.411 38.462 0.00 0.00 0.00 1.89
251 252 7.201410 CGGAGGTTGTACATTATATGCGTAATC 60.201 40.741 0.00 0.00 0.00 1.75
252 253 7.601130 GGAGGTTGTACATTATATGCGTAATCA 59.399 37.037 0.00 0.00 0.00 2.57
253 254 8.896320 AGGTTGTACATTATATGCGTAATCAA 57.104 30.769 0.00 0.00 0.00 2.57
254 255 9.332502 AGGTTGTACATTATATGCGTAATCAAA 57.667 29.630 0.00 0.00 0.00 2.69
255 256 9.938670 GGTTGTACATTATATGCGTAATCAAAA 57.061 29.630 0.00 0.00 0.00 2.44
275 276 9.719355 ATCAAAAAGAATAAATTAAAAGCCCGT 57.281 25.926 0.00 0.00 0.00 5.28
276 277 8.983724 TCAAAAAGAATAAATTAAAAGCCCGTG 58.016 29.630 0.00 0.00 0.00 4.94
277 278 8.983724 CAAAAAGAATAAATTAAAAGCCCGTGA 58.016 29.630 0.00 0.00 0.00 4.35
278 279 8.528917 AAAAGAATAAATTAAAAGCCCGTGAC 57.471 30.769 0.00 0.00 0.00 3.67
279 280 6.827586 AGAATAAATTAAAAGCCCGTGACA 57.172 33.333 0.00 0.00 0.00 3.58
280 281 7.222000 AGAATAAATTAAAAGCCCGTGACAA 57.778 32.000 0.00 0.00 0.00 3.18
281 282 7.088272 AGAATAAATTAAAAGCCCGTGACAAC 58.912 34.615 0.00 0.00 0.00 3.32
291 292 3.534160 GTGACAACGCACGATCGT 58.466 55.556 16.60 16.60 45.58 3.73
300 301 3.687572 ACGCACGATCGTTCTATTAGT 57.312 42.857 20.14 3.67 40.07 2.24
301 302 4.025015 ACGCACGATCGTTCTATTAGTT 57.975 40.909 20.14 0.00 40.07 2.24
302 303 5.160699 ACGCACGATCGTTCTATTAGTTA 57.839 39.130 20.14 0.00 40.07 2.24
303 304 5.572211 ACGCACGATCGTTCTATTAGTTAA 58.428 37.500 20.14 0.00 40.07 2.01
304 305 5.453587 ACGCACGATCGTTCTATTAGTTAAC 59.546 40.000 20.14 0.00 40.07 2.01
305 306 5.680229 CGCACGATCGTTCTATTAGTTAACT 59.320 40.000 20.14 13.68 0.00 2.24
306 307 6.129769 CGCACGATCGTTCTATTAGTTAACTC 60.130 42.308 20.14 0.00 0.00 3.01
314 315 8.800332 TCGTTCTATTAGTTAACTCTTGGTTCT 58.200 33.333 12.39 0.00 39.17 3.01
320 321 3.808174 AGTTAACTCTTGGTTCTGCGTTC 59.192 43.478 1.12 0.00 39.17 3.95
371 379 1.209261 TGTGCACCACTTCTTGACAGA 59.791 47.619 15.69 0.00 35.11 3.41
382 390 5.233902 CACTTCTTGACAGAGAGAGTTTGTG 59.766 44.000 0.00 0.00 0.00 3.33
389 397 1.346068 AGAGAGAGTTTGTGTGAGGGC 59.654 52.381 0.00 0.00 0.00 5.19
390 398 1.070758 GAGAGAGTTTGTGTGAGGGCA 59.929 52.381 0.00 0.00 0.00 5.36
457 470 2.049433 CGGACGGTGACAGGACAC 60.049 66.667 0.00 0.00 39.70 3.67
466 479 0.611062 TGACAGGACACCTACGGGAG 60.611 60.000 0.00 0.00 36.25 4.30
467 480 0.323178 GACAGGACACCTACGGGAGA 60.323 60.000 0.00 0.00 36.25 3.71
515 530 2.490903 GCATCATCAACTTGGCTCAGTT 59.509 45.455 0.00 0.00 37.49 3.16
519 534 2.227388 CATCAACTTGGCTCAGTTGGTC 59.773 50.000 22.13 0.00 43.41 4.02
520 535 0.588252 CAACTTGGCTCAGTTGGTCG 59.412 55.000 17.51 0.00 46.84 4.79
521 536 0.535102 AACTTGGCTCAGTTGGTCGG 60.535 55.000 2.34 0.00 35.57 4.79
522 537 2.281484 TTGGCTCAGTTGGTCGGC 60.281 61.111 0.00 0.00 0.00 5.54
523 538 3.113514 TTGGCTCAGTTGGTCGGCA 62.114 57.895 0.00 0.00 0.00 5.69
524 539 3.050275 GGCTCAGTTGGTCGGCAC 61.050 66.667 0.00 0.00 0.00 5.01
525 540 3.050275 GCTCAGTTGGTCGGCACC 61.050 66.667 0.00 0.00 44.10 5.01
616 635 0.370273 CGACGGGCGAGAAAGAAATG 59.630 55.000 0.00 0.00 44.57 2.32
637 656 4.735132 ACGTGGTGCCCGATCGTG 62.735 66.667 15.09 3.21 33.55 4.35
781 821 1.301401 CGCCGAGACAAACTCCCAA 60.301 57.895 0.00 0.00 42.18 4.12
885 934 2.433145 CTCGCTCGCTTGCTTCCA 60.433 61.111 0.00 0.00 0.00 3.53
901 950 4.760047 CAGCCGCCGCCAGTTACT 62.760 66.667 0.00 0.00 34.57 2.24
1178 1249 2.502510 GGTGCGTGCGAATGCTTG 60.503 61.111 9.50 0.00 43.34 4.01
1182 1253 3.010585 GCGTGCGAATGCTTGTCGA 62.011 57.895 0.00 0.00 41.02 4.20
1227 1302 2.338620 GCGCCCCCTTTTGTTGAC 59.661 61.111 0.00 0.00 0.00 3.18
1238 1313 1.327303 TTTGTTGACCATGGCCTGAC 58.673 50.000 13.04 6.42 0.00 3.51
1350 1429 4.863925 GAGCTCCTCGTCGCCAGC 62.864 72.222 0.87 2.65 0.00 4.85
1464 1543 2.031919 CGGCAAGTGCAGGTACCA 59.968 61.111 15.94 0.00 44.36 3.25
1496 1575 4.821589 CTCTTCCCCTCCACGCGC 62.822 72.222 5.73 0.00 0.00 6.86
1504 1583 4.847516 CTCCACGCGCGATCGGAA 62.848 66.667 39.36 19.61 35.95 4.30
1527 1606 2.694628 GGAATGCATTGGCTATTGTGGA 59.305 45.455 18.59 0.00 41.91 4.02
1549 1628 1.539496 GCCTGCGTTTGGTCCGATATA 60.539 52.381 0.00 0.00 0.00 0.86
1567 1649 9.083422 TCCGATATATAATCCATCTCCTGATTC 57.917 37.037 0.00 0.00 33.46 2.52
1596 1678 3.573967 GGAAGCCAAAGAGTTGAAATCCA 59.426 43.478 0.00 0.00 36.83 3.41
1598 1680 2.893489 AGCCAAAGAGTTGAAATCCACC 59.107 45.455 0.00 0.00 36.83 4.61
2184 2269 4.783621 GCCACCATCCTGCGCTCA 62.784 66.667 9.73 0.00 0.00 4.26
2206 2291 0.383590 CATCAACACACGCCCAACAA 59.616 50.000 0.00 0.00 0.00 2.83
2215 2300 2.430367 GCCCAACAACGAGACCCT 59.570 61.111 0.00 0.00 0.00 4.34
2265 2350 0.031449 TCGACGTGTCAGATGCAACA 59.969 50.000 0.00 0.00 0.00 3.33
2280 2365 1.906824 AACACCGCTCCTCCTTCGA 60.907 57.895 0.00 0.00 0.00 3.71
2748 2834 2.653115 CTGCAGACGTCTCCAGCA 59.347 61.111 22.89 22.93 0.00 4.41
2945 3031 4.843331 GGGGGATGAGGGGAGGCA 62.843 72.222 0.00 0.00 0.00 4.75
3006 3092 2.821366 GTGAGGGCCGCATGAGTG 60.821 66.667 14.57 0.00 0.00 3.51
3007 3093 3.002583 TGAGGGCCGCATGAGTGA 61.003 61.111 5.62 0.00 0.00 3.41
3008 3094 2.202987 GAGGGCCGCATGAGTGAG 60.203 66.667 1.02 0.00 0.00 3.51
3009 3095 3.746949 GAGGGCCGCATGAGTGAGG 62.747 68.421 1.02 0.00 46.85 3.86
3010 3096 4.864334 GGGCCGCATGAGTGAGGG 62.864 72.222 0.00 0.00 44.58 4.30
3011 3097 3.785859 GGCCGCATGAGTGAGGGA 61.786 66.667 0.00 0.00 44.58 4.20
3012 3098 2.202987 GCCGCATGAGTGAGGGAG 60.203 66.667 0.00 0.00 44.58 4.30
3013 3099 3.023949 GCCGCATGAGTGAGGGAGT 62.024 63.158 0.00 0.00 44.58 3.85
3014 3100 1.142748 CCGCATGAGTGAGGGAGTC 59.857 63.158 0.00 0.00 41.15 3.36
3015 3101 1.142748 CGCATGAGTGAGGGAGTCC 59.857 63.158 0.00 0.00 0.00 3.85
3016 3102 1.607801 CGCATGAGTGAGGGAGTCCA 61.608 60.000 12.30 0.00 34.83 4.02
3017 3103 0.835941 GCATGAGTGAGGGAGTCCAT 59.164 55.000 12.30 2.80 34.83 3.41
3018 3104 1.211457 GCATGAGTGAGGGAGTCCATT 59.789 52.381 12.30 0.00 34.83 3.16
3019 3105 2.744494 GCATGAGTGAGGGAGTCCATTC 60.744 54.545 12.30 8.68 34.83 2.67
3020 3106 2.325661 TGAGTGAGGGAGTCCATTCA 57.674 50.000 12.30 11.32 34.83 2.57
3021 3107 2.837947 TGAGTGAGGGAGTCCATTCAT 58.162 47.619 12.30 4.86 34.83 2.57
3022 3108 2.502947 TGAGTGAGGGAGTCCATTCATG 59.497 50.000 12.30 0.00 34.83 3.07
3023 3109 2.503356 GAGTGAGGGAGTCCATTCATGT 59.497 50.000 12.30 6.06 34.83 3.21
3024 3110 2.238144 AGTGAGGGAGTCCATTCATGTG 59.762 50.000 12.30 0.00 34.83 3.21
3025 3111 1.065199 TGAGGGAGTCCATTCATGTGC 60.065 52.381 12.30 0.00 34.83 4.57
3026 3112 0.257039 AGGGAGTCCATTCATGTGCC 59.743 55.000 12.30 0.00 34.83 5.01
3027 3113 0.257039 GGGAGTCCATTCATGTGCCT 59.743 55.000 12.30 0.00 0.00 4.75
3028 3114 1.673168 GGAGTCCATTCATGTGCCTC 58.327 55.000 3.60 0.00 0.00 4.70
3036 3122 1.139498 TTCATGTGCCTCCCCCTGAA 61.139 55.000 0.00 0.00 0.00 3.02
3041 3127 2.081787 TGCCTCCCCCTGAACAACA 61.082 57.895 0.00 0.00 0.00 3.33
3042 3128 1.152830 GCCTCCCCCTGAACAACAA 59.847 57.895 0.00 0.00 0.00 2.83
3053 3139 5.224888 CCCTGAACAACAAAATGTCTGATG 58.775 41.667 0.00 0.00 31.81 3.07
3066 3152 6.373186 AATGTCTGATGTAATGTGCATGAG 57.627 37.500 0.00 0.00 0.00 2.90
3070 3156 6.025896 GTCTGATGTAATGTGCATGAGTTTG 58.974 40.000 0.00 0.00 31.19 2.93
3073 3159 2.889678 TGTAATGTGCATGAGTTTGGCA 59.110 40.909 0.00 0.00 34.70 4.92
3190 3299 9.784531 AAAACATAATCGATCCTTGTATCTCAT 57.215 29.630 0.00 0.00 0.00 2.90
3200 3309 5.759059 TCCTTGTATCTCATTTCCTGCAAT 58.241 37.500 0.00 0.00 0.00 3.56
3272 3381 1.004745 GAAGAGAATGGGGCACTTCCA 59.995 52.381 0.00 0.00 38.82 3.53
3320 3432 2.219674 GCTCAGCGTTATCAAATCTCCG 59.780 50.000 0.00 0.00 0.00 4.63
3392 3516 1.450312 GCAGCGGACTTACAGCCAT 60.450 57.895 0.00 0.00 40.39 4.40
3479 3603 3.908382 GCTCGCTCTTGTACAACAAAATG 59.092 43.478 3.59 0.00 37.69 2.32
3548 3680 1.610522 GCCAGTTGTCATGCTTCAAGT 59.389 47.619 0.00 0.00 0.00 3.16
3704 3844 4.321974 GGCCCTTCCAGATTTAGTGTTTTG 60.322 45.833 0.00 0.00 34.01 2.44
3718 3858 3.118665 AGTGTTTTGCATGGTTTCAAGCT 60.119 39.130 0.00 0.00 38.31 3.74
3724 3864 7.712639 TGTTTTGCATGGTTTCAAGCTTAATTA 59.287 29.630 0.00 0.00 38.31 1.40
3725 3865 8.720562 GTTTTGCATGGTTTCAAGCTTAATTAT 58.279 29.630 0.00 0.00 38.31 1.28
3726 3866 7.830940 TTGCATGGTTTCAAGCTTAATTATG 57.169 32.000 0.00 1.91 38.31 1.90
3727 3867 6.934056 TGCATGGTTTCAAGCTTAATTATGT 58.066 32.000 0.00 0.00 38.31 2.29
3728 3868 7.385267 TGCATGGTTTCAAGCTTAATTATGTT 58.615 30.769 0.00 0.00 38.31 2.71
3738 3878 9.273016 TCAAGCTTAATTATGTTATAGGAGTGC 57.727 33.333 0.00 0.00 0.00 4.40
3741 3881 9.799106 AGCTTAATTATGTTATAGGAGTGCAAT 57.201 29.630 0.00 0.00 0.00 3.56
3799 4078 6.763610 TGCTTACCTTGTTAATTTTGTTTGGG 59.236 34.615 0.00 0.00 0.00 4.12
3800 4079 6.293190 GCTTACCTTGTTAATTTTGTTTGGGC 60.293 38.462 0.00 0.00 0.00 5.36
3801 4080 5.104259 ACCTTGTTAATTTTGTTTGGGCA 57.896 34.783 0.00 0.00 0.00 5.36
3899 4178 2.498078 GACATTCCCCTCCGATATCCTC 59.502 54.545 0.00 0.00 0.00 3.71
3962 4241 1.598132 CTTCAGCTGAAGCATCATCCG 59.402 52.381 36.46 16.18 44.10 4.18
3974 4253 0.611200 ATCATCCGTGGGTTCAACGA 59.389 50.000 0.00 0.00 0.00 3.85
4006 4285 2.556287 GGCAACGCCGACTCAAAG 59.444 61.111 0.00 0.00 39.62 2.77
4035 4314 7.191918 ACAGATTATCCCCTTTTCTTGGAATT 58.808 34.615 0.00 0.00 0.00 2.17
4036 4315 7.343057 ACAGATTATCCCCTTTTCTTGGAATTC 59.657 37.037 0.00 0.00 0.00 2.17
4091 4370 5.899120 TTACTTGTTGCAAAAGGTGTGTA 57.101 34.783 14.33 2.85 0.00 2.90
4099 4378 3.568007 TGCAAAAGGTGTGTATTCTCCAC 59.432 43.478 0.00 0.00 0.00 4.02
4100 4379 3.364964 GCAAAAGGTGTGTATTCTCCACG 60.365 47.826 0.00 0.00 35.56 4.94
4112 4391 2.941453 TCTCCACGCAGTCTTGTATC 57.059 50.000 0.00 0.00 41.61 2.24
4113 4392 2.167662 TCTCCACGCAGTCTTGTATCA 58.832 47.619 0.00 0.00 41.61 2.15
4114 4393 2.760650 TCTCCACGCAGTCTTGTATCAT 59.239 45.455 0.00 0.00 41.61 2.45
4118 4397 3.990469 CCACGCAGTCTTGTATCATATCC 59.010 47.826 0.00 0.00 41.61 2.59
4121 4400 3.259374 CGCAGTCTTGTATCATATCCCCT 59.741 47.826 0.00 0.00 0.00 4.79
4145 4424 5.507077 TGTTTGTCGCTACAATCTTTGTTC 58.493 37.500 4.46 0.00 44.85 3.18
4165 4444 3.509442 TCAATCCAGTTTCCCAAGCAAT 58.491 40.909 0.00 0.00 0.00 3.56
4168 4447 3.243359 TCCAGTTTCCCAAGCAATCTT 57.757 42.857 0.00 0.00 0.00 2.40
4169 4448 3.575805 TCCAGTTTCCCAAGCAATCTTT 58.424 40.909 0.00 0.00 0.00 2.52
4171 4450 3.070015 CCAGTTTCCCAAGCAATCTTTGT 59.930 43.478 0.00 0.00 0.00 2.83
4172 4451 4.443315 CCAGTTTCCCAAGCAATCTTTGTT 60.443 41.667 0.00 0.00 0.00 2.83
4173 4452 4.746611 CAGTTTCCCAAGCAATCTTTGTTC 59.253 41.667 0.00 0.00 0.00 3.18
4174 4453 4.405358 AGTTTCCCAAGCAATCTTTGTTCA 59.595 37.500 0.00 0.00 0.00 3.18
4175 4454 5.104982 AGTTTCCCAAGCAATCTTTGTTCAA 60.105 36.000 0.00 0.00 0.00 2.69
4177 4456 5.138125 TCCCAAGCAATCTTTGTTCAATC 57.862 39.130 0.00 0.00 0.00 2.67
4178 4457 4.021192 TCCCAAGCAATCTTTGTTCAATCC 60.021 41.667 0.00 0.00 0.00 3.01
4179 4458 4.262549 CCCAAGCAATCTTTGTTCAATCCA 60.263 41.667 0.00 0.00 0.00 3.41
4180 4459 4.927425 CCAAGCAATCTTTGTTCAATCCAG 59.073 41.667 0.00 0.00 0.00 3.86
4181 4460 5.510179 CCAAGCAATCTTTGTTCAATCCAGT 60.510 40.000 0.00 0.00 0.00 4.00
4182 4461 5.796424 AGCAATCTTTGTTCAATCCAGTT 57.204 34.783 0.00 0.00 0.00 3.16
4183 4462 6.165700 AGCAATCTTTGTTCAATCCAGTTT 57.834 33.333 0.00 0.00 0.00 2.66
4184 4463 6.218746 AGCAATCTTTGTTCAATCCAGTTTC 58.781 36.000 0.00 0.00 0.00 2.78
4185 4464 5.406477 GCAATCTTTGTTCAATCCAGTTTCC 59.594 40.000 0.00 0.00 0.00 3.13
4186 4465 5.728637 ATCTTTGTTCAATCCAGTTTCCC 57.271 39.130 0.00 0.00 0.00 3.97
4187 4466 4.541705 TCTTTGTTCAATCCAGTTTCCCA 58.458 39.130 0.00 0.00 0.00 4.37
4188 4467 4.959210 TCTTTGTTCAATCCAGTTTCCCAA 59.041 37.500 0.00 0.00 0.00 4.12
4189 4468 4.935352 TTGTTCAATCCAGTTTCCCAAG 57.065 40.909 0.00 0.00 0.00 3.61
4190 4469 2.627699 TGTTCAATCCAGTTTCCCAAGC 59.372 45.455 0.00 0.00 0.00 4.01
4191 4470 2.627699 GTTCAATCCAGTTTCCCAAGCA 59.372 45.455 0.00 0.00 0.00 3.91
4192 4471 2.956132 TCAATCCAGTTTCCCAAGCAA 58.044 42.857 0.00 0.00 0.00 3.91
4193 4472 3.303938 TCAATCCAGTTTCCCAAGCAAA 58.696 40.909 0.00 0.00 0.00 3.68
4194 4473 3.069443 TCAATCCAGTTTCCCAAGCAAAC 59.931 43.478 0.00 0.00 34.47 2.93
4195 4474 2.452600 TCCAGTTTCCCAAGCAAACT 57.547 45.000 0.00 0.00 43.46 2.66
4196 4475 3.586470 TCCAGTTTCCCAAGCAAACTA 57.414 42.857 0.00 0.00 41.25 2.24
4197 4476 3.904717 TCCAGTTTCCCAAGCAAACTAA 58.095 40.909 0.00 0.00 41.25 2.24
4198 4477 3.888930 TCCAGTTTCCCAAGCAAACTAAG 59.111 43.478 0.00 0.00 41.25 2.18
4199 4478 3.005791 CCAGTTTCCCAAGCAAACTAAGG 59.994 47.826 0.00 0.00 41.25 2.69
4200 4479 2.628178 AGTTTCCCAAGCAAACTAAGGC 59.372 45.455 0.00 0.00 41.36 4.35
4203 4482 1.423541 TCCCAAGCAAACTAAGGCTGA 59.576 47.619 0.00 0.00 40.93 4.26
4207 4486 3.256631 CCAAGCAAACTAAGGCTGATGTT 59.743 43.478 0.00 0.00 40.93 2.71
4215 4494 5.886960 ACTAAGGCTGATGTTCACATTTC 57.113 39.130 0.00 0.00 36.57 2.17
4362 4642 8.802267 TGTACATATGATAGATTCGGTGATCAA 58.198 33.333 10.38 0.00 32.34 2.57
4364 4644 7.670364 ACATATGATAGATTCGGTGATCAACA 58.330 34.615 12.13 0.00 32.34 3.33
4389 4669 4.060900 AGTTTGGATCGCATATGCTGTAG 58.939 43.478 24.56 9.84 39.32 2.74
4391 4671 4.541973 TTGGATCGCATATGCTGTAGAT 57.458 40.909 24.56 18.62 39.32 1.98
4517 4798 3.056952 GCATTTGGTTGTGCTAGATCG 57.943 47.619 0.00 0.00 38.30 3.69
4553 4834 6.266103 CAGATGGGGTTTTACATGAGCATAAT 59.734 38.462 0.00 0.00 0.00 1.28
4554 4835 6.840705 AGATGGGGTTTTACATGAGCATAATT 59.159 34.615 0.00 0.00 0.00 1.40
4575 4922 6.906157 ATTGCCTCTCCCATGTATATTTTG 57.094 37.500 0.00 0.00 0.00 2.44
4576 4923 5.645056 TGCCTCTCCCATGTATATTTTGA 57.355 39.130 0.00 0.00 0.00 2.69
4577 4924 5.624159 TGCCTCTCCCATGTATATTTTGAG 58.376 41.667 0.00 0.00 0.00 3.02
4579 4926 5.456763 GCCTCTCCCATGTATATTTTGAGGT 60.457 44.000 0.00 0.00 40.26 3.85
4581 4928 7.691791 GCCTCTCCCATGTATATTTTGAGGTTA 60.692 40.741 0.00 0.00 40.26 2.85
4582 4929 7.661847 CCTCTCCCATGTATATTTTGAGGTTAC 59.338 40.741 0.00 0.00 35.25 2.50
4583 4930 7.214381 TCTCCCATGTATATTTTGAGGTTACG 58.786 38.462 0.00 0.00 0.00 3.18
4584 4931 6.292923 TCCCATGTATATTTTGAGGTTACGG 58.707 40.000 0.00 0.00 0.00 4.02
4585 4932 6.059484 CCCATGTATATTTTGAGGTTACGGT 58.941 40.000 0.00 0.00 0.00 4.83
4586 4933 7.070946 TCCCATGTATATTTTGAGGTTACGGTA 59.929 37.037 0.00 0.00 0.00 4.02
4601 4996 8.658499 AGGTTACGGTAATATGAAAGTCATTC 57.342 34.615 3.59 0.00 38.26 2.67
4663 5058 1.723608 TTTGGAACGCAGGCAGTGTG 61.724 55.000 0.00 0.00 40.86 3.82
4683 5078 1.941668 GCAGAACACCCAGCACTACTC 60.942 57.143 0.00 0.00 0.00 2.59
4696 5091 2.744202 GCACTACTCCACCAAACTCATG 59.256 50.000 0.00 0.00 0.00 3.07
4700 5095 2.977914 ACTCCACCAAACTCATGATCG 58.022 47.619 0.00 0.00 0.00 3.69
4710 5105 7.011763 CACCAAACTCATGATCGATTTGACTAT 59.988 37.037 17.08 0.00 33.08 2.12
4771 5169 2.954318 ACATCATTGCAGCCATCTAACC 59.046 45.455 0.00 0.00 0.00 2.85
4852 5250 4.689812 GCATAATGTTGCCATGTGAACAAA 59.310 37.500 9.99 3.90 35.76 2.83
4921 5321 0.026803 CTGACGCAGCTAAATTCGGC 59.973 55.000 0.00 0.00 0.00 5.54
4949 5349 7.007723 ACCAATTAAAGAACCAACCTGATGTA 58.992 34.615 0.00 0.00 0.00 2.29
4951 5351 7.975616 CCAATTAAAGAACCAACCTGATGTATG 59.024 37.037 0.00 0.00 0.00 2.39
4952 5352 8.522830 CAATTAAAGAACCAACCTGATGTATGT 58.477 33.333 0.00 0.00 0.00 2.29
4953 5353 8.650143 ATTAAAGAACCAACCTGATGTATGTT 57.350 30.769 0.00 0.00 0.00 2.71
4954 5354 6.976934 AAAGAACCAACCTGATGTATGTTT 57.023 33.333 0.00 0.00 0.00 2.83
4955 5355 6.976934 AAGAACCAACCTGATGTATGTTTT 57.023 33.333 0.00 0.00 0.00 2.43
4956 5356 6.575162 AGAACCAACCTGATGTATGTTTTC 57.425 37.500 0.00 0.00 0.00 2.29
4957 5357 5.181245 AGAACCAACCTGATGTATGTTTTCG 59.819 40.000 0.00 0.00 0.00 3.46
4958 5358 4.647611 ACCAACCTGATGTATGTTTTCGA 58.352 39.130 0.00 0.00 0.00 3.71
4959 5359 4.695455 ACCAACCTGATGTATGTTTTCGAG 59.305 41.667 0.00 0.00 0.00 4.04
4960 5360 4.935205 CCAACCTGATGTATGTTTTCGAGA 59.065 41.667 0.00 0.00 0.00 4.04
4961 5361 5.411361 CCAACCTGATGTATGTTTTCGAGAA 59.589 40.000 0.00 0.00 0.00 2.87
4962 5362 6.402550 CCAACCTGATGTATGTTTTCGAGAAG 60.403 42.308 0.00 0.00 0.00 2.85
5139 5541 1.214373 CCCGCACACACAAATGCAAC 61.214 55.000 0.00 0.00 42.17 4.17
5195 5597 1.957186 CGAACAACGCGGGAAAGGA 60.957 57.895 12.47 0.00 34.51 3.36
5199 5601 1.104630 ACAACGCGGGAAAGGAAAAA 58.895 45.000 12.47 0.00 0.00 1.94
5204 5606 0.888619 GCGGGAAAGGAAAAAGGGAG 59.111 55.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.035368 AGAGACATGATGCGCTTAAGATAT 57.965 37.500 9.73 0.00 0.00 1.63
1 2 5.242615 AGAGAGACATGATGCGCTTAAGATA 59.757 40.000 9.73 0.00 0.00 1.98
2 3 4.039004 AGAGAGACATGATGCGCTTAAGAT 59.961 41.667 9.73 0.00 0.00 2.40
3 4 3.382865 AGAGAGACATGATGCGCTTAAGA 59.617 43.478 9.73 0.00 0.00 2.10
4 5 3.490155 CAGAGAGACATGATGCGCTTAAG 59.510 47.826 9.73 0.00 0.00 1.85
5 6 3.118992 ACAGAGAGACATGATGCGCTTAA 60.119 43.478 9.73 0.00 0.00 1.85
6 7 2.428530 ACAGAGAGACATGATGCGCTTA 59.571 45.455 9.73 0.00 0.00 3.09
7 8 1.206610 ACAGAGAGACATGATGCGCTT 59.793 47.619 9.73 0.55 0.00 4.68
8 9 0.822811 ACAGAGAGACATGATGCGCT 59.177 50.000 9.73 0.00 0.00 5.92
9 10 0.928922 CACAGAGAGACATGATGCGC 59.071 55.000 0.00 0.00 0.00 6.09
10 11 2.290531 ACACAGAGAGACATGATGCG 57.709 50.000 0.00 0.00 0.00 4.73
11 12 6.685657 TGATATACACAGAGAGACATGATGC 58.314 40.000 0.00 0.00 0.00 3.91
12 13 8.521176 TGATGATATACACAGAGAGACATGATG 58.479 37.037 0.00 0.00 0.00 3.07
13 14 8.647256 TGATGATATACACAGAGAGACATGAT 57.353 34.615 0.00 0.00 0.00 2.45
14 15 8.469309 TTGATGATATACACAGAGAGACATGA 57.531 34.615 0.00 0.00 0.00 3.07
15 16 8.358895 ACTTGATGATATACACAGAGAGACATG 58.641 37.037 0.00 0.00 0.00 3.21
16 17 8.476064 ACTTGATGATATACACAGAGAGACAT 57.524 34.615 0.00 0.00 0.00 3.06
17 18 7.888250 ACTTGATGATATACACAGAGAGACA 57.112 36.000 0.00 0.00 0.00 3.41
18 19 9.672086 GTAACTTGATGATATACACAGAGAGAC 57.328 37.037 0.00 0.00 0.00 3.36
19 20 8.851145 GGTAACTTGATGATATACACAGAGAGA 58.149 37.037 0.00 0.00 0.00 3.10
40 41 9.016438 TAAAATCCATTTCACCTACAAGGTAAC 57.984 33.333 0.00 0.00 38.32 2.50
41 42 9.238368 CTAAAATCCATTTCACCTACAAGGTAA 57.762 33.333 0.00 0.00 38.32 2.85
42 43 8.387813 ACTAAAATCCATTTCACCTACAAGGTA 58.612 33.333 0.00 0.00 38.32 3.08
43 44 7.238710 ACTAAAATCCATTTCACCTACAAGGT 58.761 34.615 0.00 0.00 39.83 3.50
44 45 7.703058 ACTAAAATCCATTTCACCTACAAGG 57.297 36.000 0.00 0.00 35.40 3.61
51 52 9.936759 TGGAAAATAACTAAAATCCATTTCACC 57.063 29.630 0.00 0.00 32.28 4.02
105 106 9.502145 GACAGAAAAATTATGTCATATTTCGCA 57.498 29.630 11.72 0.00 42.30 5.10
106 107 8.958043 GGACAGAAAAATTATGTCATATTTCGC 58.042 33.333 16.76 6.00 44.08 4.70
120 121 9.883142 TGACAAGTATTTTTGGACAGAAAAATT 57.117 25.926 8.75 0.00 40.88 1.82
121 122 9.533253 CTGACAAGTATTTTTGGACAGAAAAAT 57.467 29.630 0.00 0.00 44.17 1.82
122 123 8.744652 TCTGACAAGTATTTTTGGACAGAAAAA 58.255 29.630 12.02 0.00 39.77 1.94
123 124 8.287439 TCTGACAAGTATTTTTGGACAGAAAA 57.713 30.769 12.02 0.00 39.77 2.29
124 125 7.773224 TCTCTGACAAGTATTTTTGGACAGAAA 59.227 33.333 13.93 0.00 40.85 2.52
125 126 7.279615 TCTCTGACAAGTATTTTTGGACAGAA 58.720 34.615 13.93 7.19 40.85 3.02
126 127 6.826668 TCTCTGACAAGTATTTTTGGACAGA 58.173 36.000 13.03 13.03 40.08 3.41
127 128 7.496529 TTCTCTGACAAGTATTTTTGGACAG 57.503 36.000 0.00 0.00 37.63 3.51
128 129 7.873719 TTTCTCTGACAAGTATTTTTGGACA 57.126 32.000 0.00 0.00 32.32 4.02
129 130 9.185192 CAATTTCTCTGACAAGTATTTTTGGAC 57.815 33.333 0.00 0.00 32.32 4.02
130 131 9.130661 TCAATTTCTCTGACAAGTATTTTTGGA 57.869 29.630 0.00 0.00 32.32 3.53
131 132 9.918630 ATCAATTTCTCTGACAAGTATTTTTGG 57.081 29.630 0.00 0.00 32.32 3.28
139 140 9.814899 CTAGATACATCAATTTCTCTGACAAGT 57.185 33.333 0.00 0.00 0.00 3.16
141 142 9.809096 GTCTAGATACATCAATTTCTCTGACAA 57.191 33.333 0.00 0.00 0.00 3.18
142 143 8.131731 CGTCTAGATACATCAATTTCTCTGACA 58.868 37.037 0.00 0.00 0.00 3.58
143 144 8.132362 ACGTCTAGATACATCAATTTCTCTGAC 58.868 37.037 0.00 0.00 0.00 3.51
144 145 8.226819 ACGTCTAGATACATCAATTTCTCTGA 57.773 34.615 0.00 0.00 0.00 3.27
216 217 2.223745 GTACAACCTCCGCCTGAAAAA 58.776 47.619 0.00 0.00 0.00 1.94
217 218 1.141254 TGTACAACCTCCGCCTGAAAA 59.859 47.619 0.00 0.00 0.00 2.29
218 219 0.759959 TGTACAACCTCCGCCTGAAA 59.240 50.000 0.00 0.00 0.00 2.69
219 220 0.981183 ATGTACAACCTCCGCCTGAA 59.019 50.000 0.00 0.00 0.00 3.02
220 221 0.981183 AATGTACAACCTCCGCCTGA 59.019 50.000 0.00 0.00 0.00 3.86
221 222 2.684001 TAATGTACAACCTCCGCCTG 57.316 50.000 0.00 0.00 0.00 4.85
222 223 4.802918 GCATATAATGTACAACCTCCGCCT 60.803 45.833 0.00 0.00 0.00 5.52
223 224 3.435671 GCATATAATGTACAACCTCCGCC 59.564 47.826 0.00 0.00 0.00 6.13
224 225 3.122948 CGCATATAATGTACAACCTCCGC 59.877 47.826 0.00 0.00 0.00 5.54
225 226 4.304110 ACGCATATAATGTACAACCTCCG 58.696 43.478 0.00 0.05 0.00 4.63
226 227 7.601130 TGATTACGCATATAATGTACAACCTCC 59.399 37.037 0.00 0.00 0.00 4.30
227 228 8.528917 TGATTACGCATATAATGTACAACCTC 57.471 34.615 0.00 0.00 0.00 3.85
228 229 8.896320 TTGATTACGCATATAATGTACAACCT 57.104 30.769 0.00 0.00 0.00 3.50
229 230 9.938670 TTTTGATTACGCATATAATGTACAACC 57.061 29.630 0.00 0.00 0.00 3.77
249 250 9.719355 ACGGGCTTTTAATTTATTCTTTTTGAT 57.281 25.926 0.00 0.00 0.00 2.57
250 251 8.983724 CACGGGCTTTTAATTTATTCTTTTTGA 58.016 29.630 0.00 0.00 0.00 2.69
251 252 8.983724 TCACGGGCTTTTAATTTATTCTTTTTG 58.016 29.630 0.00 0.00 0.00 2.44
252 253 8.984764 GTCACGGGCTTTTAATTTATTCTTTTT 58.015 29.630 0.00 0.00 0.00 1.94
253 254 8.145122 TGTCACGGGCTTTTAATTTATTCTTTT 58.855 29.630 0.00 0.00 0.00 2.27
254 255 7.662897 TGTCACGGGCTTTTAATTTATTCTTT 58.337 30.769 0.00 0.00 0.00 2.52
255 256 7.222000 TGTCACGGGCTTTTAATTTATTCTT 57.778 32.000 0.00 0.00 0.00 2.52
256 257 6.827586 TGTCACGGGCTTTTAATTTATTCT 57.172 33.333 0.00 0.00 0.00 2.40
257 258 6.033091 CGTTGTCACGGGCTTTTAATTTATTC 59.967 38.462 0.00 0.00 43.16 1.75
258 259 5.859648 CGTTGTCACGGGCTTTTAATTTATT 59.140 36.000 0.00 0.00 43.16 1.40
259 260 5.395642 CGTTGTCACGGGCTTTTAATTTAT 58.604 37.500 0.00 0.00 43.16 1.40
260 261 4.785417 CGTTGTCACGGGCTTTTAATTTA 58.215 39.130 0.00 0.00 43.16 1.40
261 262 3.634283 CGTTGTCACGGGCTTTTAATTT 58.366 40.909 0.00 0.00 43.16 1.82
262 263 3.276882 CGTTGTCACGGGCTTTTAATT 57.723 42.857 0.00 0.00 43.16 1.40
263 264 2.981400 CGTTGTCACGGGCTTTTAAT 57.019 45.000 0.00 0.00 43.16 1.40
274 275 3.534160 ACGATCGTGCGTTGTCAC 58.466 55.556 22.06 0.00 42.71 3.67
281 282 5.680229 AGTTAACTAATAGAACGATCGTGCG 59.320 40.000 23.51 9.06 37.29 5.34
282 283 6.911511 AGAGTTAACTAATAGAACGATCGTGC 59.088 38.462 23.51 21.21 0.00 5.34
283 284 8.734933 CAAGAGTTAACTAATAGAACGATCGTG 58.265 37.037 23.51 9.79 0.00 4.35
284 285 7.914346 CCAAGAGTTAACTAATAGAACGATCGT 59.086 37.037 16.60 16.60 0.00 3.73
285 286 7.914346 ACCAAGAGTTAACTAATAGAACGATCG 59.086 37.037 14.88 14.88 0.00 3.69
286 287 9.583765 AACCAAGAGTTAACTAATAGAACGATC 57.416 33.333 8.42 0.00 36.74 3.69
287 288 9.583765 GAACCAAGAGTTAACTAATAGAACGAT 57.416 33.333 8.42 0.00 39.40 3.73
288 289 8.800332 AGAACCAAGAGTTAACTAATAGAACGA 58.200 33.333 8.42 0.00 39.40 3.85
289 290 8.861101 CAGAACCAAGAGTTAACTAATAGAACG 58.139 37.037 8.42 0.00 39.40 3.95
290 291 8.657729 GCAGAACCAAGAGTTAACTAATAGAAC 58.342 37.037 8.42 0.00 39.40 3.01
291 292 7.544566 CGCAGAACCAAGAGTTAACTAATAGAA 59.455 37.037 8.42 0.00 39.40 2.10
292 293 7.033791 CGCAGAACCAAGAGTTAACTAATAGA 58.966 38.462 8.42 0.00 39.40 1.98
293 294 6.812160 ACGCAGAACCAAGAGTTAACTAATAG 59.188 38.462 8.42 0.98 39.40 1.73
294 295 6.694447 ACGCAGAACCAAGAGTTAACTAATA 58.306 36.000 8.42 0.00 39.40 0.98
295 296 5.548406 ACGCAGAACCAAGAGTTAACTAAT 58.452 37.500 8.42 0.00 39.40 1.73
296 297 4.952460 ACGCAGAACCAAGAGTTAACTAA 58.048 39.130 8.42 0.00 39.40 2.24
297 298 4.595762 ACGCAGAACCAAGAGTTAACTA 57.404 40.909 8.42 0.00 39.40 2.24
298 299 3.470645 ACGCAGAACCAAGAGTTAACT 57.529 42.857 8.13 8.13 39.40 2.24
299 300 3.362693 CGAACGCAGAACCAAGAGTTAAC 60.363 47.826 0.00 0.00 39.40 2.01
300 301 2.798283 CGAACGCAGAACCAAGAGTTAA 59.202 45.455 0.00 0.00 39.40 2.01
301 302 2.223876 ACGAACGCAGAACCAAGAGTTA 60.224 45.455 0.00 0.00 39.40 2.24
302 303 1.217882 CGAACGCAGAACCAAGAGTT 58.782 50.000 0.00 0.00 43.07 3.01
303 304 0.104304 ACGAACGCAGAACCAAGAGT 59.896 50.000 0.00 0.00 0.00 3.24
304 305 0.508641 CACGAACGCAGAACCAAGAG 59.491 55.000 0.00 0.00 0.00 2.85
305 306 1.495584 GCACGAACGCAGAACCAAGA 61.496 55.000 0.00 0.00 0.00 3.02
306 307 1.082756 GCACGAACGCAGAACCAAG 60.083 57.895 0.00 0.00 0.00 3.61
320 321 1.078918 TCTGCTCCCAGAATGCACG 60.079 57.895 0.00 0.00 44.79 5.34
371 379 1.131638 TGCCCTCACACAAACTCTCT 58.868 50.000 0.00 0.00 0.00 3.10
382 390 1.690219 ATCACCCTCGATGCCCTCAC 61.690 60.000 0.00 0.00 0.00 3.51
389 397 1.431488 CGGCAACATCACCCTCGATG 61.431 60.000 0.00 0.00 46.78 3.84
390 398 1.153369 CGGCAACATCACCCTCGAT 60.153 57.895 0.00 0.00 0.00 3.59
466 479 4.142730 GCTTTGTCATTGATGGAGTGACTC 60.143 45.833 3.47 3.47 42.03 3.36
467 480 3.755378 GCTTTGTCATTGATGGAGTGACT 59.245 43.478 6.34 0.00 42.03 3.41
578 593 0.522915 GTAGTGTAGTGGCTCGTCGC 60.523 60.000 0.00 0.00 38.13 5.19
584 599 1.310933 CCCGTCGTAGTGTAGTGGCT 61.311 60.000 0.00 0.00 0.00 4.75
637 656 1.427819 CGGAATTAACTGCGGCACC 59.572 57.895 0.00 0.00 0.00 5.01
842 891 1.153939 CACGCAAGAGAGGAGGTCG 60.154 63.158 0.00 0.00 43.62 4.79
844 893 2.286523 CCCACGCAAGAGAGGAGGT 61.287 63.158 0.00 0.00 43.62 3.85
848 897 1.738099 CGAACCCACGCAAGAGAGG 60.738 63.158 0.00 0.00 43.62 3.69
885 934 3.072468 TAGTAACTGGCGGCGGCT 61.072 61.111 33.21 16.79 39.81 5.52
1165 1235 0.095245 AATCGACAAGCATTCGCACG 59.905 50.000 0.00 0.00 42.27 5.34
1166 1236 1.527696 CAATCGACAAGCATTCGCAC 58.472 50.000 0.00 0.00 42.27 5.34
1167 1237 0.179192 GCAATCGACAAGCATTCGCA 60.179 50.000 0.00 0.00 42.27 5.10
1168 1238 0.097674 AGCAATCGACAAGCATTCGC 59.902 50.000 8.09 0.00 36.40 4.70
1169 1239 1.590679 CGAGCAATCGACAAGCATTCG 60.591 52.381 8.09 5.81 37.85 3.34
1227 1302 1.451567 CAGCAGAGTCAGGCCATGG 60.452 63.158 7.63 7.63 0.00 3.66
1479 1558 4.821589 GCGCGTGGAGGGGAAGAG 62.822 72.222 8.43 0.00 0.00 2.85
1496 1575 2.351060 CCAATGCATTCCATTCCGATCG 60.351 50.000 9.53 8.51 42.15 3.69
1499 1578 0.746063 GCCAATGCATTCCATTCCGA 59.254 50.000 9.53 0.00 42.15 4.55
1500 1579 0.748450 AGCCAATGCATTCCATTCCG 59.252 50.000 9.53 0.00 42.15 4.30
1501 1580 4.202284 ACAATAGCCAATGCATTCCATTCC 60.202 41.667 9.53 0.00 42.15 3.01
1502 1581 4.748102 CACAATAGCCAATGCATTCCATTC 59.252 41.667 9.53 0.00 42.15 2.67
1503 1582 4.443739 CCACAATAGCCAATGCATTCCATT 60.444 41.667 9.53 3.96 44.86 3.16
1504 1583 3.070446 CCACAATAGCCAATGCATTCCAT 59.930 43.478 9.53 0.36 41.13 3.41
1527 1606 2.819984 ATCGGACCAAACGCAGGCAT 62.820 55.000 0.00 0.00 0.00 4.40
1549 1628 5.046087 TGCGATGAATCAGGAGATGGATTAT 60.046 40.000 0.00 0.00 34.06 1.28
1567 1649 0.731417 CTCTTTGGCTTCCTGCGATG 59.269 55.000 0.00 0.00 44.05 3.84
1848 1931 6.040391 TGGCTTCAAACTTACTGCTGTATTTT 59.960 34.615 4.12 4.97 0.00 1.82
1865 1948 1.295423 GCCTAGACGGTGGCTTCAA 59.705 57.895 1.01 0.00 45.26 2.69
1920 2003 1.414158 TAGGCCCAGACTATCAGCAC 58.586 55.000 0.00 0.00 0.00 4.40
2025 2108 3.621805 TTGAGGAGTGCGCCGGAA 61.622 61.111 5.05 0.00 0.00 4.30
2107 2192 1.099879 GGCAAGGTAGATGCAGCAGG 61.100 60.000 4.07 0.00 45.60 4.85
2153 2238 4.228567 TGGCGTTGTCTGGCGTCA 62.229 61.111 0.00 0.00 40.53 4.35
2184 2269 0.251121 TTGGGCGTGTGTTGATGGAT 60.251 50.000 0.00 0.00 0.00 3.41
2206 2291 3.386237 GGAGCAGCAGGGTCTCGT 61.386 66.667 0.00 0.00 43.58 4.18
2265 2350 1.304217 TTCTCGAAGGAGGAGCGGT 60.304 57.895 0.00 0.00 40.85 5.68
2280 2365 2.368875 CAGTGGTAGAAGGTGGTGTTCT 59.631 50.000 0.00 0.00 37.94 3.01
2374 2459 0.863144 GCTTTTTGCGTCGTGACCTA 59.137 50.000 0.00 0.00 0.00 3.08
2414 2499 3.305335 CGGGTGAAAACCTTCAATCCTTG 60.305 47.826 0.00 0.00 43.18 3.61
2609 2695 0.395724 TCCTGCTGCCTCTATCGTCA 60.396 55.000 0.00 0.00 0.00 4.35
2703 2789 4.728102 CCAACGTACTCGGCCGCA 62.728 66.667 23.51 8.85 41.85 5.69
2945 3031 1.608717 GATCCCATCTATCGCCGCCT 61.609 60.000 0.00 0.00 0.00 5.52
2990 3076 3.002583 TCACTCATGCGGCCCTCA 61.003 61.111 0.00 0.00 0.00 3.86
3000 3086 2.837947 TGAATGGACTCCCTCACTCAT 58.162 47.619 0.00 0.00 0.00 2.90
3006 3092 1.673168 GCACATGAATGGACTCCCTC 58.327 55.000 0.00 0.00 0.00 4.30
3007 3093 0.257039 GGCACATGAATGGACTCCCT 59.743 55.000 0.00 0.00 0.00 4.20
3008 3094 0.257039 AGGCACATGAATGGACTCCC 59.743 55.000 0.00 0.00 0.00 4.30
3009 3095 1.673168 GAGGCACATGAATGGACTCC 58.327 55.000 0.00 0.00 31.17 3.85
3010 3096 1.673168 GGAGGCACATGAATGGACTC 58.327 55.000 0.00 2.68 34.41 3.36
3011 3097 0.257039 GGGAGGCACATGAATGGACT 59.743 55.000 0.00 0.00 0.00 3.85
3012 3098 0.753111 GGGGAGGCACATGAATGGAC 60.753 60.000 0.00 0.00 0.00 4.02
3013 3099 1.614711 GGGGAGGCACATGAATGGA 59.385 57.895 0.00 0.00 0.00 3.41
3014 3100 1.456331 GGGGGAGGCACATGAATGG 60.456 63.158 0.00 0.00 0.00 3.16
3015 3101 0.754217 CAGGGGGAGGCACATGAATG 60.754 60.000 0.00 0.00 0.00 2.67
3016 3102 0.920763 TCAGGGGGAGGCACATGAAT 60.921 55.000 0.00 0.00 0.00 2.57
3017 3103 1.139498 TTCAGGGGGAGGCACATGAA 61.139 55.000 0.00 0.00 0.00 2.57
3018 3104 1.541118 TTCAGGGGGAGGCACATGA 60.541 57.895 0.00 0.00 0.00 3.07
3019 3105 1.379044 GTTCAGGGGGAGGCACATG 60.379 63.158 0.00 0.00 0.00 3.21
3020 3106 1.434513 TTGTTCAGGGGGAGGCACAT 61.435 55.000 0.00 0.00 0.00 3.21
3021 3107 2.081787 TTGTTCAGGGGGAGGCACA 61.082 57.895 0.00 0.00 0.00 4.57
3022 3108 1.603739 GTTGTTCAGGGGGAGGCAC 60.604 63.158 0.00 0.00 0.00 5.01
3023 3109 1.650242 TTGTTGTTCAGGGGGAGGCA 61.650 55.000 0.00 0.00 0.00 4.75
3024 3110 0.469144 TTTGTTGTTCAGGGGGAGGC 60.469 55.000 0.00 0.00 0.00 4.70
3025 3111 2.080654 TTTTGTTGTTCAGGGGGAGG 57.919 50.000 0.00 0.00 0.00 4.30
3026 3112 2.965147 ACATTTTGTTGTTCAGGGGGAG 59.035 45.455 0.00 0.00 0.00 4.30
3027 3113 2.962421 GACATTTTGTTGTTCAGGGGGA 59.038 45.455 0.00 0.00 0.00 4.81
3028 3114 2.965147 AGACATTTTGTTGTTCAGGGGG 59.035 45.455 0.00 0.00 0.00 5.40
3036 3122 6.642131 GCACATTACATCAGACATTTTGTTGT 59.358 34.615 0.00 0.00 34.08 3.32
3041 3127 7.094075 ACTCATGCACATTACATCAGACATTTT 60.094 33.333 0.00 0.00 0.00 1.82
3042 3128 6.376299 ACTCATGCACATTACATCAGACATTT 59.624 34.615 0.00 0.00 0.00 2.32
3053 3139 3.574284 TGCCAAACTCATGCACATTAC 57.426 42.857 0.00 0.00 0.00 1.89
3135 3231 5.411781 AGCTCTCGTATAAAAACCAGAGTG 58.588 41.667 1.59 0.00 31.71 3.51
3136 3232 5.662674 AGCTCTCGTATAAAAACCAGAGT 57.337 39.130 1.59 0.00 31.71 3.24
3152 3249 9.804547 GATCGATTATGTTTTCAATTAGCTCTC 57.195 33.333 0.00 0.00 0.00 3.20
3170 3274 8.090831 CAGGAAATGAGATACAAGGATCGATTA 58.909 37.037 0.00 0.00 0.00 1.75
3190 3299 6.507958 TTCATCATAAACGATTGCAGGAAA 57.492 33.333 0.00 0.00 0.00 3.13
3200 3309 5.703130 TGTGGTGTCATTTCATCATAAACGA 59.297 36.000 0.00 0.00 30.93 3.85
3228 3337 3.498676 GTGTTCGACACTCTCCTGG 57.501 57.895 9.86 0.00 45.27 4.45
3272 3381 6.232581 TGTGTTCCATTTCCATTTTCTTGT 57.767 33.333 0.00 0.00 0.00 3.16
3320 3432 1.259840 ATGTCAAGGGGCCAACATGC 61.260 55.000 4.39 0.00 31.41 4.06
3392 3516 2.371841 TGCTGACCTTTGAAGCTCCTTA 59.628 45.455 0.00 0.00 37.82 2.69
3589 3722 9.848710 TTACCGGATGTATTCAAAACCATATAA 57.151 29.630 9.46 0.00 0.00 0.98
3673 3813 1.002069 TCTGGAAGGGCCACATTCAT 58.998 50.000 6.18 0.00 43.33 2.57
3674 3814 1.002069 ATCTGGAAGGGCCACATTCA 58.998 50.000 6.18 0.00 43.33 2.57
3675 3815 2.149973 AATCTGGAAGGGCCACATTC 57.850 50.000 6.18 5.49 43.33 2.67
3676 3816 2.629017 AAATCTGGAAGGGCCACATT 57.371 45.000 6.18 0.00 43.33 2.71
3677 3817 2.582636 ACTAAATCTGGAAGGGCCACAT 59.417 45.455 6.18 0.00 43.33 3.21
3704 3844 7.832503 AACATAATTAAGCTTGAAACCATGC 57.167 32.000 9.86 0.00 35.63 4.06
3724 3864 6.261826 GCAGAAGAATTGCACTCCTATAACAT 59.738 38.462 0.00 0.00 41.17 2.71
3725 3865 5.586243 GCAGAAGAATTGCACTCCTATAACA 59.414 40.000 0.00 0.00 41.17 2.41
3726 3866 5.008118 GGCAGAAGAATTGCACTCCTATAAC 59.992 44.000 0.00 0.00 43.28 1.89
3727 3867 5.104360 AGGCAGAAGAATTGCACTCCTATAA 60.104 40.000 0.00 0.00 43.28 0.98
3728 3868 4.410228 AGGCAGAAGAATTGCACTCCTATA 59.590 41.667 0.00 0.00 43.28 1.31
3738 3878 2.671396 GCAAATGCAGGCAGAAGAATTG 59.329 45.455 0.00 0.34 41.59 2.32
3768 3908 9.524106 ACAAAATTAACAAGGTAAGCAAGTAAC 57.476 29.630 0.00 0.00 0.00 2.50
3795 4074 6.493115 TGATTCTAACTCTTTTGAATGCCCAA 59.507 34.615 0.00 0.00 37.32 4.12
3799 4078 8.078596 ACTTGTGATTCTAACTCTTTTGAATGC 58.921 33.333 0.00 0.00 37.32 3.56
3800 4079 9.956720 AACTTGTGATTCTAACTCTTTTGAATG 57.043 29.630 0.00 0.00 37.32 2.67
3801 4080 9.956720 CAACTTGTGATTCTAACTCTTTTGAAT 57.043 29.630 0.00 0.00 39.12 2.57
3899 4178 1.699656 CGTGATCCTCCAAAGCGCAG 61.700 60.000 11.47 0.00 0.00 5.18
3962 4241 1.868498 TCGATGTTTCGTTGAACCCAC 59.132 47.619 0.00 0.00 45.65 4.61
3993 4272 0.032952 TGTTAGCTTTGAGTCGGCGT 59.967 50.000 6.85 0.00 0.00 5.68
3997 4276 5.463724 GGGATAATCTGTTAGCTTTGAGTCG 59.536 44.000 0.00 0.00 0.00 4.18
4006 4285 6.039829 CCAAGAAAAGGGGATAATCTGTTAGC 59.960 42.308 0.00 0.00 0.00 3.09
4035 4314 4.151121 TGCCTTTGTTGAATCATCTTGGA 58.849 39.130 0.00 0.00 0.00 3.53
4036 4315 4.524316 TGCCTTTGTTGAATCATCTTGG 57.476 40.909 0.00 0.00 0.00 3.61
4045 4324 1.810151 GCGTAGGATGCCTTTGTTGAA 59.190 47.619 0.00 0.00 34.61 2.69
4091 4370 3.195610 TGATACAAGACTGCGTGGAGAAT 59.804 43.478 0.00 0.00 0.00 2.40
4099 4378 3.259374 AGGGGATATGATACAAGACTGCG 59.741 47.826 0.00 0.00 0.00 5.18
4100 4379 4.899352 AGGGGATATGATACAAGACTGC 57.101 45.455 0.00 0.00 0.00 4.40
4112 4391 2.643551 AGCGACAAACAAGGGGATATG 58.356 47.619 0.00 0.00 0.00 1.78
4113 4392 3.199071 TGTAGCGACAAACAAGGGGATAT 59.801 43.478 0.00 0.00 30.68 1.63
4114 4393 2.568062 TGTAGCGACAAACAAGGGGATA 59.432 45.455 0.00 0.00 30.68 2.59
4145 4424 3.512724 AGATTGCTTGGGAAACTGGATTG 59.487 43.478 0.00 0.00 0.00 2.67
4165 4444 4.541705 TGGGAAACTGGATTGAACAAAGA 58.458 39.130 0.00 0.00 0.00 2.52
4168 4447 3.069443 GCTTGGGAAACTGGATTGAACAA 59.931 43.478 0.00 0.00 0.00 2.83
4169 4448 2.627699 GCTTGGGAAACTGGATTGAACA 59.372 45.455 0.00 0.00 0.00 3.18
4171 4450 2.956132 TGCTTGGGAAACTGGATTGAA 58.044 42.857 0.00 0.00 0.00 2.69
4172 4451 2.673775 TGCTTGGGAAACTGGATTGA 57.326 45.000 0.00 0.00 0.00 2.57
4173 4452 3.070015 AGTTTGCTTGGGAAACTGGATTG 59.930 43.478 14.44 0.00 41.16 2.67
4174 4453 3.308401 AGTTTGCTTGGGAAACTGGATT 58.692 40.909 14.44 0.00 41.16 3.01
4175 4454 2.962859 AGTTTGCTTGGGAAACTGGAT 58.037 42.857 14.44 0.00 41.16 3.41
4177 4456 3.005791 CCTTAGTTTGCTTGGGAAACTGG 59.994 47.826 21.32 13.82 42.35 4.00
4178 4457 3.552890 GCCTTAGTTTGCTTGGGAAACTG 60.553 47.826 21.32 10.25 42.35 3.16
4179 4458 2.628178 GCCTTAGTTTGCTTGGGAAACT 59.372 45.455 18.01 18.01 44.13 2.66
4180 4459 2.628178 AGCCTTAGTTTGCTTGGGAAAC 59.372 45.455 6.56 6.56 32.94 2.78
4181 4460 2.627699 CAGCCTTAGTTTGCTTGGGAAA 59.372 45.455 0.00 0.00 35.12 3.13
4182 4461 2.158534 TCAGCCTTAGTTTGCTTGGGAA 60.159 45.455 0.00 0.00 35.12 3.97
4183 4462 1.423541 TCAGCCTTAGTTTGCTTGGGA 59.576 47.619 0.00 0.00 35.12 4.37
4184 4463 1.909700 TCAGCCTTAGTTTGCTTGGG 58.090 50.000 0.00 0.00 35.12 4.12
4185 4464 2.821969 ACATCAGCCTTAGTTTGCTTGG 59.178 45.455 0.00 0.00 35.12 3.61
4186 4465 4.022935 TGAACATCAGCCTTAGTTTGCTTG 60.023 41.667 0.00 0.00 35.12 4.01
4187 4466 4.022849 GTGAACATCAGCCTTAGTTTGCTT 60.023 41.667 0.00 0.00 35.12 3.91
4188 4467 3.503748 GTGAACATCAGCCTTAGTTTGCT 59.496 43.478 0.00 0.00 38.67 3.91
4189 4468 3.253188 TGTGAACATCAGCCTTAGTTTGC 59.747 43.478 0.00 0.00 0.00 3.68
4190 4469 5.633830 ATGTGAACATCAGCCTTAGTTTG 57.366 39.130 0.00 0.00 28.78 2.93
4191 4470 6.294731 GGAAATGTGAACATCAGCCTTAGTTT 60.295 38.462 0.00 0.00 35.10 2.66
4192 4471 5.183904 GGAAATGTGAACATCAGCCTTAGTT 59.816 40.000 0.00 0.00 35.10 2.24
4193 4472 4.702131 GGAAATGTGAACATCAGCCTTAGT 59.298 41.667 0.00 0.00 35.10 2.24
4194 4473 4.701651 TGGAAATGTGAACATCAGCCTTAG 59.298 41.667 0.00 0.00 35.10 2.18
4195 4474 4.661222 TGGAAATGTGAACATCAGCCTTA 58.339 39.130 0.00 0.00 35.10 2.69
4196 4475 3.499338 TGGAAATGTGAACATCAGCCTT 58.501 40.909 0.00 0.00 35.10 4.35
4197 4476 3.159213 TGGAAATGTGAACATCAGCCT 57.841 42.857 0.00 0.00 35.10 4.58
4198 4477 3.940209 TTGGAAATGTGAACATCAGCC 57.060 42.857 0.00 0.18 35.10 4.85
4199 4478 5.063180 TCATTGGAAATGTGAACATCAGC 57.937 39.130 0.00 0.00 35.10 4.26
4200 4479 6.040247 CCATCATTGGAAATGTGAACATCAG 58.960 40.000 0.00 0.00 46.92 2.90
4203 4482 4.778958 ACCCATCATTGGAAATGTGAACAT 59.221 37.500 0.26 0.00 46.92 2.71
4207 4486 3.098377 CCACCCATCATTGGAAATGTGA 58.902 45.455 0.26 0.00 46.92 3.58
4215 4494 3.600448 ATCCTAACCACCCATCATTGG 57.400 47.619 0.00 0.00 43.23 3.16
4335 4614 8.802267 TGATCACCGAATCTATCATATGTACAA 58.198 33.333 0.00 0.00 0.00 2.41
4362 4642 3.251729 GCATATGCGATCCAAACTCATGT 59.748 43.478 12.82 0.00 0.00 3.21
4502 4783 1.831106 ACCATCGATCTAGCACAACCA 59.169 47.619 0.00 0.00 0.00 3.67
4517 4798 7.558444 TGTAAAACCCCATCTGTAAATACCATC 59.442 37.037 0.00 0.00 0.00 3.51
4553 4834 6.012337 TCAAAATATACATGGGAGAGGCAA 57.988 37.500 0.00 0.00 0.00 4.52
4554 4835 5.456619 CCTCAAAATATACATGGGAGAGGCA 60.457 44.000 0.00 0.00 34.40 4.75
4575 4922 8.658499 AATGACTTTCATATTACCGTAACCTC 57.342 34.615 0.00 0.00 35.76 3.85
4576 4923 7.437267 CGAATGACTTTCATATTACCGTAACCT 59.563 37.037 0.00 0.00 35.76 3.50
4577 4924 7.436080 TCGAATGACTTTCATATTACCGTAACC 59.564 37.037 0.00 0.00 35.76 2.85
4579 4926 8.343974 GTCGAATGACTTTCATATTACCGTAA 57.656 34.615 0.00 0.00 42.08 3.18
4581 4928 6.823678 GTCGAATGACTTTCATATTACCGT 57.176 37.500 0.00 0.00 42.08 4.83
4663 5058 0.035458 AGTAGTGCTGGGTGTTCTGC 59.965 55.000 0.00 0.00 0.00 4.26
4678 5073 4.115516 CGATCATGAGTTTGGTGGAGTAG 58.884 47.826 0.09 0.00 0.00 2.57
4683 5078 4.395854 TCAAATCGATCATGAGTTTGGTGG 59.604 41.667 17.90 0.00 32.26 4.61
4696 5091 6.854892 CCATGCTCAAAATAGTCAAATCGATC 59.145 38.462 0.00 0.00 0.00 3.69
4700 5095 9.837525 GATATCCATGCTCAAAATAGTCAAATC 57.162 33.333 0.00 0.00 0.00 2.17
4710 5105 4.098349 GGCTTGTGATATCCATGCTCAAAA 59.902 41.667 20.83 0.00 34.44 2.44
4748 5146 4.498682 GGTTAGATGGCTGCAATGATGTTC 60.499 45.833 0.50 0.00 0.00 3.18
4840 5238 8.303156 TCCAGTGTTAATAATTTGTTCACATGG 58.697 33.333 0.00 11.23 0.00 3.66
4900 5300 2.205074 CCGAATTTAGCTGCGTCAGAT 58.795 47.619 10.46 6.90 32.44 2.90
4921 5321 3.005367 AGGTTGGTTCTTTAATTGGTGCG 59.995 43.478 0.00 0.00 0.00 5.34
4949 5349 8.383318 TGAATTTTCTCTCTTCTCGAAAACAT 57.617 30.769 0.00 0.00 38.85 2.71
4951 5351 8.552034 TCTTGAATTTTCTCTCTTCTCGAAAAC 58.448 33.333 0.00 0.00 38.85 2.43
4952 5352 8.662781 TCTTGAATTTTCTCTCTTCTCGAAAA 57.337 30.769 0.00 0.00 39.89 2.29
4953 5353 8.552034 GTTCTTGAATTTTCTCTCTTCTCGAAA 58.448 33.333 0.00 0.00 0.00 3.46
4954 5354 7.171678 GGTTCTTGAATTTTCTCTCTTCTCGAA 59.828 37.037 0.00 0.00 0.00 3.71
4955 5355 6.647067 GGTTCTTGAATTTTCTCTCTTCTCGA 59.353 38.462 0.00 0.00 0.00 4.04
4956 5356 6.400515 CGGTTCTTGAATTTTCTCTCTTCTCG 60.401 42.308 0.00 0.00 0.00 4.04
4957 5357 6.647067 TCGGTTCTTGAATTTTCTCTCTTCTC 59.353 38.462 0.00 0.00 0.00 2.87
4958 5358 6.525629 TCGGTTCTTGAATTTTCTCTCTTCT 58.474 36.000 0.00 0.00 0.00 2.85
4959 5359 6.619660 GCTCGGTTCTTGAATTTTCTCTCTTC 60.620 42.308 0.00 0.00 0.00 2.87
4960 5360 5.180304 GCTCGGTTCTTGAATTTTCTCTCTT 59.820 40.000 0.00 0.00 0.00 2.85
4961 5361 4.693095 GCTCGGTTCTTGAATTTTCTCTCT 59.307 41.667 0.00 0.00 0.00 3.10
4962 5362 4.693095 AGCTCGGTTCTTGAATTTTCTCTC 59.307 41.667 0.00 0.00 0.00 3.20
5073 5473 3.320626 GCTTTCATGCCAAGACTTTTCC 58.679 45.455 8.29 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.