Multiple sequence alignment - TraesCS1B01G318000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G318000 chr1B 100.000 5193 0 0 1 5193 542926081 542920889 0.000000e+00 9590.0
1 TraesCS1B01G318000 chr1A 89.592 2306 153 50 374 2637 498806101 498803841 0.000000e+00 2848.0
2 TraesCS1B01G318000 chr1A 91.637 849 43 7 3545 4365 498803134 498802286 0.000000e+00 1149.0
3 TraesCS1B01G318000 chr1A 90.112 536 34 11 2643 3166 498803788 498803260 0.000000e+00 678.0
4 TraesCS1B01G318000 chr1A 92.090 177 10 2 39 211 498806280 498806104 4.020000e-61 246.0
5 TraesCS1B01G318000 chr1D 88.922 2383 162 47 291 2635 403560126 403557808 0.000000e+00 2844.0
6 TraesCS1B01G318000 chr1D 91.839 772 29 15 2631 3396 403557755 403557012 0.000000e+00 1046.0
7 TraesCS1B01G318000 chr1D 90.520 538 27 11 3851 4365 403556570 403556034 0.000000e+00 689.0
8 TraesCS1B01G318000 chr1D 82.137 655 102 12 4508 5154 26143797 26143150 9.830000e-152 547.0
9 TraesCS1B01G318000 chr1D 89.600 375 31 3 3472 3846 403557017 403556651 2.190000e-128 470.0
10 TraesCS1B01G318000 chr1D 93.143 175 8 2 36 206 403560311 403560137 2.400000e-63 254.0
11 TraesCS1B01G318000 chr6D 80.978 757 118 22 4450 5193 164817656 164816913 1.250000e-160 577.0
12 TraesCS1B01G318000 chr6D 81.908 608 79 25 4450 5042 461498398 461498989 7.820000e-133 484.0
13 TraesCS1B01G318000 chr7D 82.781 604 85 12 4450 5048 489122987 489123576 5.960000e-144 521.0
14 TraesCS1B01G318000 chr3D 80.753 717 91 23 4365 5048 20396090 20396792 2.770000e-142 516.0
15 TraesCS1B01G318000 chr3D 80.169 711 97 20 4362 5042 513667698 513668394 4.670000e-135 492.0
16 TraesCS1B01G318000 chr3D 82.327 447 46 17 4365 4784 264595192 264595632 1.780000e-94 357.0
17 TraesCS1B01G318000 chr4D 80.614 717 92 23 4365 5046 34655607 34654903 1.290000e-140 510.0
18 TraesCS1B01G318000 chr5D 82.208 607 86 15 4450 5046 316693733 316693139 2.160000e-138 503.0
19 TraesCS1B01G318000 chr5D 85.906 149 18 3 4365 4512 431227393 431227539 6.960000e-34 156.0
20 TraesCS1B01G318000 chr2B 82.927 574 76 19 4450 5015 103189511 103188952 1.000000e-136 497.0
21 TraesCS1B01G318000 chr2B 87.407 135 16 1 5060 5193 4905767 4905633 2.500000e-33 154.0
22 TraesCS1B01G318000 chr2B 85.401 137 20 0 5057 5193 5071768 5071904 5.420000e-30 143.0
23 TraesCS1B01G318000 chr7B 80.112 714 92 25 4368 5046 749124869 749124171 2.170000e-133 486.0
24 TraesCS1B01G318000 chr7B 86.567 134 17 1 5061 5193 364207706 364207839 4.190000e-31 147.0
25 TraesCS1B01G318000 chr7B 89.535 86 8 1 4365 4449 34045109 34045194 1.980000e-19 108.0
26 TraesCS1B01G318000 chr5B 81.773 598 86 19 4455 5048 665957513 665956935 3.640000e-131 479.0
27 TraesCS1B01G318000 chr5B 88.889 135 14 1 5060 5193 594277523 594277389 1.160000e-36 165.0
28 TraesCS1B01G318000 chr5B 81.548 168 22 7 3683 3849 117907056 117906897 4.220000e-26 130.0
29 TraesCS1B01G318000 chr2A 77.682 578 72 37 4365 4907 502819303 502818748 3.040000e-77 300.0
30 TraesCS1B01G318000 chr5A 87.500 128 16 0 5062 5189 356471022 356470895 1.170000e-31 148.0
31 TraesCS1B01G318000 chr5A 81.765 170 22 8 3681 3849 110672662 110672501 3.260000e-27 134.0
32 TraesCS1B01G318000 chr5A 86.585 82 10 1 4369 4449 362159948 362159867 7.160000e-14 89.8
33 TraesCS1B01G318000 chr3B 86.131 137 19 0 5057 5193 52432563 52432699 1.170000e-31 148.0
34 TraesCS1B01G318000 chr4A 86.567 134 17 1 5060 5193 584737918 584737786 4.190000e-31 147.0
35 TraesCS1B01G318000 chr6B 87.209 86 10 1 4365 4449 94127568 94127653 4.280000e-16 97.1
36 TraesCS1B01G318000 chr3A 89.333 75 7 1 4365 4438 16648748 16648674 5.540000e-15 93.5
37 TraesCS1B01G318000 chr3A 88.571 70 7 1 4379 4447 429461329 429461398 3.330000e-12 84.2
38 TraesCS1B01G318000 chr7A 100.000 29 0 0 4382 4410 579232179 579232207 3.000000e-03 54.7
39 TraesCS1B01G318000 chr6A 100.000 28 0 0 215 242 609828460 609828487 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G318000 chr1B 542920889 542926081 5192 True 9590.00 9590 100.00000 1 5193 1 chr1B.!!$R1 5192
1 TraesCS1B01G318000 chr1A 498802286 498806280 3994 True 1230.25 2848 90.85775 39 4365 4 chr1A.!!$R1 4326
2 TraesCS1B01G318000 chr1D 403556034 403560311 4277 True 1060.60 2844 90.80480 36 4365 5 chr1D.!!$R2 4329
3 TraesCS1B01G318000 chr1D 26143150 26143797 647 True 547.00 547 82.13700 4508 5154 1 chr1D.!!$R1 646
4 TraesCS1B01G318000 chr6D 164816913 164817656 743 True 577.00 577 80.97800 4450 5193 1 chr6D.!!$R1 743
5 TraesCS1B01G318000 chr6D 461498398 461498989 591 False 484.00 484 81.90800 4450 5042 1 chr6D.!!$F1 592
6 TraesCS1B01G318000 chr7D 489122987 489123576 589 False 521.00 521 82.78100 4450 5048 1 chr7D.!!$F1 598
7 TraesCS1B01G318000 chr3D 20396090 20396792 702 False 516.00 516 80.75300 4365 5048 1 chr3D.!!$F1 683
8 TraesCS1B01G318000 chr3D 513667698 513668394 696 False 492.00 492 80.16900 4362 5042 1 chr3D.!!$F3 680
9 TraesCS1B01G318000 chr4D 34654903 34655607 704 True 510.00 510 80.61400 4365 5046 1 chr4D.!!$R1 681
10 TraesCS1B01G318000 chr5D 316693139 316693733 594 True 503.00 503 82.20800 4450 5046 1 chr5D.!!$R1 596
11 TraesCS1B01G318000 chr2B 103188952 103189511 559 True 497.00 497 82.92700 4450 5015 1 chr2B.!!$R2 565
12 TraesCS1B01G318000 chr7B 749124171 749124869 698 True 486.00 486 80.11200 4368 5046 1 chr7B.!!$R1 678
13 TraesCS1B01G318000 chr5B 665956935 665957513 578 True 479.00 479 81.77300 4455 5048 1 chr5B.!!$R3 593
14 TraesCS1B01G318000 chr2A 502818748 502819303 555 True 300.00 300 77.68200 4365 4907 1 chr2A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 494 0.474184 CACCCAGTGAAGACCAAGGT 59.526 55.0 0.0 0.0 35.23 3.50 F
1257 1283 0.179137 CGCTGCTCACCAACGAGATA 60.179 55.0 0.0 0.0 35.10 1.98 F
2273 2333 0.036732 TGCATGAGTGTCCACCTTCC 59.963 55.0 0.0 0.0 0.00 3.46 F
2274 2334 0.036732 GCATGAGTGTCCACCTTCCA 59.963 55.0 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1697 0.110295 TCACCCCAACAGACCACATG 59.890 55.0 0.00 0.0 0.00 3.21 R
2486 2550 0.396435 TTGGGTGTCGCTCTCATGTT 59.604 50.0 0.00 0.0 0.00 2.71 R
4180 4419 0.036875 AACAAGTCTACTGCTGCCCC 59.963 55.0 0.00 0.0 0.00 5.80 R
4253 4498 0.107831 TTTACAGCAGCCGGTGAACT 59.892 50.0 6.05 0.0 43.56 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.621428 TGCATTCTTTGTTTTCCAATTTTGA 57.379 28.000 0.00 0.00 31.81 2.69
26 27 8.223177 TGCATTCTTTGTTTTCCAATTTTGAT 57.777 26.923 0.00 0.00 31.81 2.57
27 28 8.684520 TGCATTCTTTGTTTTCCAATTTTGATT 58.315 25.926 0.00 0.00 31.81 2.57
28 29 8.960075 GCATTCTTTGTTTTCCAATTTTGATTG 58.040 29.630 0.00 0.00 31.81 2.67
41 42 8.867112 CCAATTTTGATTGGTCTCATTATCTG 57.133 34.615 9.47 0.00 44.56 2.90
52 53 8.347004 TGGTCTCATTATCTGCATTTGTTTAA 57.653 30.769 0.00 0.00 0.00 1.52
219 224 6.403866 AAAATAGGTTCTGTTGCACAATCA 57.596 33.333 0.00 0.00 0.00 2.57
220 225 6.403866 AAATAGGTTCTGTTGCACAATCAA 57.596 33.333 0.00 0.00 0.00 2.57
221 226 6.403866 AATAGGTTCTGTTGCACAATCAAA 57.596 33.333 0.00 0.00 0.00 2.69
222 227 4.311816 AGGTTCTGTTGCACAATCAAAG 57.688 40.909 0.00 0.00 0.00 2.77
223 228 3.701040 AGGTTCTGTTGCACAATCAAAGT 59.299 39.130 0.00 0.00 0.00 2.66
224 229 4.160252 AGGTTCTGTTGCACAATCAAAGTT 59.840 37.500 0.00 0.00 0.00 2.66
225 230 4.869861 GGTTCTGTTGCACAATCAAAGTTT 59.130 37.500 0.00 0.00 0.00 2.66
226 231 5.351189 GGTTCTGTTGCACAATCAAAGTTTT 59.649 36.000 0.00 0.00 0.00 2.43
227 232 6.533367 GGTTCTGTTGCACAATCAAAGTTTTA 59.467 34.615 0.00 0.00 0.00 1.52
228 233 7.064016 GGTTCTGTTGCACAATCAAAGTTTTAA 59.936 33.333 0.00 0.00 0.00 1.52
229 234 8.439286 GTTCTGTTGCACAATCAAAGTTTTAAA 58.561 29.630 0.00 0.00 0.00 1.52
230 235 8.715191 TCTGTTGCACAATCAAAGTTTTAAAT 57.285 26.923 0.00 0.00 0.00 1.40
231 236 9.809096 TCTGTTGCACAATCAAAGTTTTAAATA 57.191 25.926 0.00 0.00 0.00 1.40
233 238 8.547069 TGTTGCACAATCAAAGTTTTAAATAGC 58.453 29.630 0.00 0.00 0.00 2.97
234 239 7.650834 TGCACAATCAAAGTTTTAAATAGCC 57.349 32.000 0.00 0.00 0.00 3.93
235 240 6.364706 TGCACAATCAAAGTTTTAAATAGCCG 59.635 34.615 0.00 0.00 0.00 5.52
236 241 6.183360 GCACAATCAAAGTTTTAAATAGCCGG 60.183 38.462 0.00 0.00 0.00 6.13
237 242 5.867174 ACAATCAAAGTTTTAAATAGCCGGC 59.133 36.000 21.89 21.89 0.00 6.13
238 243 5.914898 ATCAAAGTTTTAAATAGCCGGCT 57.085 34.783 34.85 34.85 0.00 5.52
239 244 7.094118 ACAATCAAAGTTTTAAATAGCCGGCTA 60.094 33.333 36.88 36.88 0.00 3.93
240 245 7.582667 ATCAAAGTTTTAAATAGCCGGCTAT 57.417 32.000 37.79 37.79 40.63 2.97
241 246 8.685838 ATCAAAGTTTTAAATAGCCGGCTATA 57.314 30.769 41.53 28.18 38.20 1.31
242 247 8.508883 TCAAAGTTTTAAATAGCCGGCTATAA 57.491 30.769 41.53 31.52 38.20 0.98
243 248 8.400186 TCAAAGTTTTAAATAGCCGGCTATAAC 58.600 33.333 41.53 36.86 38.20 1.89
244 249 6.535274 AGTTTTAAATAGCCGGCTATAACG 57.465 37.500 41.53 0.00 38.20 3.18
252 257 1.578583 CCGGCTATAACGGTTTGAGG 58.421 55.000 0.00 0.00 46.03 3.86
253 258 1.137479 CCGGCTATAACGGTTTGAGGA 59.863 52.381 0.00 0.00 46.03 3.71
254 259 2.199236 CGGCTATAACGGTTTGAGGAC 58.801 52.381 0.00 0.00 0.00 3.85
255 260 2.199236 GGCTATAACGGTTTGAGGACG 58.801 52.381 0.00 0.00 0.00 4.79
256 261 2.199236 GCTATAACGGTTTGAGGACGG 58.801 52.381 0.00 0.00 0.00 4.79
257 262 2.417787 GCTATAACGGTTTGAGGACGGT 60.418 50.000 0.00 0.00 34.98 4.83
258 263 2.088950 ATAACGGTTTGAGGACGGTG 57.911 50.000 0.00 0.00 33.96 4.94
259 264 0.600782 TAACGGTTTGAGGACGGTGC 60.601 55.000 0.00 0.00 33.96 5.01
260 265 3.047877 CGGTTTGAGGACGGTGCC 61.048 66.667 0.00 0.00 0.00 5.01
261 266 3.047877 GGTTTGAGGACGGTGCCG 61.048 66.667 9.29 9.29 46.03 5.69
262 267 3.723348 GTTTGAGGACGGTGCCGC 61.723 66.667 10.87 3.68 44.19 6.53
263 268 3.936203 TTTGAGGACGGTGCCGCT 61.936 61.111 10.87 0.25 44.19 5.52
264 269 2.575893 TTTGAGGACGGTGCCGCTA 61.576 57.895 10.87 0.00 44.19 4.26
265 270 2.102109 TTTGAGGACGGTGCCGCTAA 62.102 55.000 10.87 0.00 44.19 3.09
266 271 2.102109 TTGAGGACGGTGCCGCTAAA 62.102 55.000 10.87 0.00 44.19 1.85
267 272 1.153429 GAGGACGGTGCCGCTAAAT 60.153 57.895 10.87 0.00 44.19 1.40
268 273 1.429148 GAGGACGGTGCCGCTAAATG 61.429 60.000 10.87 0.00 44.19 2.32
269 274 2.469516 GGACGGTGCCGCTAAATGG 61.470 63.158 10.87 0.00 44.19 3.16
270 275 1.448893 GACGGTGCCGCTAAATGGA 60.449 57.895 10.87 0.00 44.19 3.41
271 276 1.003112 ACGGTGCCGCTAAATGGAA 60.003 52.632 10.87 0.00 44.19 3.53
272 277 1.303091 ACGGTGCCGCTAAATGGAAC 61.303 55.000 10.87 0.00 44.19 3.62
274 279 1.807226 GTGCCGCTAAATGGAACCC 59.193 57.895 0.00 0.00 0.00 4.11
275 280 1.379309 TGCCGCTAAATGGAACCCC 60.379 57.895 0.00 0.00 0.00 4.95
276 281 2.125326 GCCGCTAAATGGAACCCCC 61.125 63.158 0.00 0.00 0.00 5.40
345 350 2.039613 GCTATAGCTGATTTGGAGGGCT 59.960 50.000 17.75 0.00 38.21 5.19
349 354 1.755783 CTGATTTGGAGGGCTGCCC 60.756 63.158 30.57 30.57 45.90 5.36
470 479 2.352805 CCAAGTCTGGCCTCACCC 59.647 66.667 3.32 0.00 35.39 4.61
484 493 0.764890 TCACCCAGTGAAGACCAAGG 59.235 55.000 0.00 0.00 39.78 3.61
485 494 0.474184 CACCCAGTGAAGACCAAGGT 59.526 55.000 0.00 0.00 35.23 3.50
500 509 1.004277 CAAGGTAAAGTAGCAGCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
557 570 4.657504 AGCATCTCCTCAACCATTATCTGA 59.342 41.667 0.00 0.00 0.00 3.27
783 797 1.558756 CTCTGCTGTTCCCCAATCTCT 59.441 52.381 0.00 0.00 0.00 3.10
828 845 3.678072 CGATCAGTTTGTTCTTCCGCTAA 59.322 43.478 0.00 0.00 0.00 3.09
845 863 3.551551 GCTAACAGTGCTTACCGTTTTG 58.448 45.455 0.00 0.00 0.00 2.44
928 948 3.564775 GGCTCTAGGGGCCTTACC 58.435 66.667 4.41 0.00 45.57 2.85
943 963 1.535462 CTTACCGGTGTTTGCTTCCTG 59.465 52.381 19.93 0.00 0.00 3.86
1221 1247 1.228245 GCTCCCACTGTGGAAGCAA 60.228 57.895 30.09 8.95 40.96 3.91
1257 1283 0.179137 CGCTGCTCACCAACGAGATA 60.179 55.000 0.00 0.00 35.10 1.98
1326 1352 1.114627 TCAGCCTGCACGATGTCTAT 58.885 50.000 0.96 0.00 0.00 1.98
1332 1358 2.544694 CCTGCACGATGTCTATGAGGAC 60.545 54.545 0.00 0.00 36.81 3.85
1335 1361 0.669077 ACGATGTCTATGAGGACGCC 59.331 55.000 0.00 0.00 38.91 5.68
1401 1427 1.179174 TCGACAGGATCATAGGGCGG 61.179 60.000 0.00 0.00 0.00 6.13
1464 1490 2.991540 GCTGGTGGGTTGAAGGCC 60.992 66.667 0.00 0.00 0.00 5.19
1491 1517 3.244875 ACAAGGCCAACATCATACACAGA 60.245 43.478 5.01 0.00 0.00 3.41
1539 1565 5.468540 TCTCGGACAGAAAAGAAGATTCA 57.531 39.130 0.00 0.00 0.00 2.57
1629 1655 4.049546 TGGGTCGGTAGATTATGTTTCG 57.950 45.455 0.00 0.00 0.00 3.46
1668 1694 1.069636 CAAGAGGTTTCGACTGCAAGC 60.070 52.381 0.00 0.00 37.60 4.01
1671 1697 1.204312 GGTTTCGACTGCAAGCGAC 59.796 57.895 9.75 1.53 40.91 5.19
1698 1724 3.335579 GTCTGTTGGGGTGATTCTGTAC 58.664 50.000 0.00 0.00 0.00 2.90
1737 1770 4.698201 TGTTGGTCATCCTGTCTTGTAA 57.302 40.909 0.00 0.00 34.23 2.41
1743 1782 8.398665 GTTGGTCATCCTGTCTTGTAATAATTC 58.601 37.037 0.00 0.00 34.23 2.17
1745 1784 7.054124 GGTCATCCTGTCTTGTAATAATTCCA 58.946 38.462 0.00 0.00 0.00 3.53
1750 1789 7.410174 TCCTGTCTTGTAATAATTCCATTGGT 58.590 34.615 1.86 0.00 0.00 3.67
1815 1856 0.105408 GATGCCCACCATTTCATGCC 59.895 55.000 0.00 0.00 33.29 4.40
1866 1913 3.764434 TCCTGCAAGTAAGTACTCCTCTG 59.236 47.826 0.00 0.00 34.99 3.35
1872 1919 6.072064 TGCAAGTAAGTACTCCTCTGAACTAC 60.072 42.308 0.00 0.00 34.99 2.73
1936 1985 2.104622 TCTGCAGTGGTGATCAAACTGA 59.895 45.455 30.34 19.30 43.22 3.41
1941 1990 4.261741 GCAGTGGTGATCAAACTGATTTGT 60.262 41.667 30.34 2.93 44.76 2.83
1948 1997 9.829507 TGGTGATCAAACTGATTTGTAATTTTT 57.170 25.926 0.00 0.00 44.76 1.94
1975 2024 7.111247 TGTGATTCATATGGGGAAAATGTTC 57.889 36.000 2.13 0.00 0.00 3.18
1979 2028 3.631686 TCATATGGGGAAAATGTTCTGCG 59.368 43.478 2.13 0.00 33.92 5.18
1982 2031 0.966179 GGGGAAAATGTTCTGCGGTT 59.034 50.000 0.00 0.00 33.92 4.44
1983 2032 1.336795 GGGGAAAATGTTCTGCGGTTG 60.337 52.381 0.00 0.00 33.92 3.77
1987 2036 2.774439 AAATGTTCTGCGGTTGTGAC 57.226 45.000 0.00 0.00 0.00 3.67
2010 2059 6.603940 CCAAATTGGTCTGGGATTTTCTTA 57.396 37.500 3.34 0.00 31.35 2.10
2011 2060 7.186570 CCAAATTGGTCTGGGATTTTCTTAT 57.813 36.000 3.34 0.00 31.35 1.73
2012 2061 7.043565 CCAAATTGGTCTGGGATTTTCTTATG 58.956 38.462 3.34 0.00 31.35 1.90
2015 2064 8.613922 AATTGGTCTGGGATTTTCTTATGATT 57.386 30.769 0.00 0.00 0.00 2.57
2016 2065 7.645058 TTGGTCTGGGATTTTCTTATGATTC 57.355 36.000 0.00 0.00 0.00 2.52
2017 2066 6.730447 TGGTCTGGGATTTTCTTATGATTCA 58.270 36.000 0.00 0.00 0.00 2.57
2018 2067 7.356680 TGGTCTGGGATTTTCTTATGATTCAT 58.643 34.615 4.28 4.28 0.00 2.57
2019 2068 8.501904 TGGTCTGGGATTTTCTTATGATTCATA 58.498 33.333 2.14 2.14 0.00 2.15
2020 2069 9.525826 GGTCTGGGATTTTCTTATGATTCATAT 57.474 33.333 7.19 0.00 0.00 1.78
2038 2087 9.793259 GATTCATATATCCTTGTTTCCACCTTA 57.207 33.333 0.00 0.00 0.00 2.69
2090 2139 4.514816 TGTTGATTGATCACGTTGACACAT 59.485 37.500 0.00 0.00 36.36 3.21
2091 2140 4.666928 TGATTGATCACGTTGACACATG 57.333 40.909 0.00 0.00 0.00 3.21
2115 2164 6.043938 TGTGTAGTTGGAAGGGAGTTAAATCT 59.956 38.462 2.56 0.00 0.00 2.40
2118 2167 6.697641 AGTTGGAAGGGAGTTAAATCTGTA 57.302 37.500 2.56 0.00 0.00 2.74
2123 2172 5.456330 GGAAGGGAGTTAAATCTGTATCCCC 60.456 48.000 2.56 0.00 46.36 4.81
2124 2173 4.909284 AGGGAGTTAAATCTGTATCCCCT 58.091 43.478 2.56 0.00 46.36 4.79
2125 2174 4.660771 AGGGAGTTAAATCTGTATCCCCTG 59.339 45.833 2.56 0.00 46.36 4.45
2126 2175 4.202472 GGGAGTTAAATCTGTATCCCCTGG 60.202 50.000 2.56 0.00 40.50 4.45
2127 2176 4.658901 GGAGTTAAATCTGTATCCCCTGGA 59.341 45.833 2.56 0.00 35.55 3.86
2129 2178 5.289510 AGTTAAATCTGTATCCCCTGGAGT 58.710 41.667 0.00 0.00 34.05 3.85
2130 2179 6.449956 AGTTAAATCTGTATCCCCTGGAGTA 58.550 40.000 0.00 0.00 34.05 2.59
2131 2180 7.082972 AGTTAAATCTGTATCCCCTGGAGTAT 58.917 38.462 0.00 0.00 34.05 2.12
2132 2181 7.235812 AGTTAAATCTGTATCCCCTGGAGTATC 59.764 40.741 0.00 0.00 34.05 2.24
2133 2182 5.361630 AATCTGTATCCCCTGGAGTATCT 57.638 43.478 0.00 0.00 34.05 1.98
2134 2183 4.834406 TCTGTATCCCCTGGAGTATCTT 57.166 45.455 0.00 0.00 34.05 2.40
2135 2184 5.157770 TCTGTATCCCCTGGAGTATCTTT 57.842 43.478 0.00 0.00 34.05 2.52
2136 2185 4.901849 TCTGTATCCCCTGGAGTATCTTTG 59.098 45.833 0.00 0.00 34.05 2.77
2137 2186 3.391296 TGTATCCCCTGGAGTATCTTTGC 59.609 47.826 0.00 0.00 34.05 3.68
2165 2214 9.950680 TCTTTGCATTTACTTAAGAAACAGAAG 57.049 29.630 10.09 8.19 0.00 2.85
2176 2225 2.902423 AAACAGAAGCACCGTGCCCA 62.902 55.000 19.96 0.00 46.52 5.36
2182 2231 1.597797 AAGCACCGTGCCCATGAATG 61.598 55.000 19.96 0.00 46.52 2.67
2198 2257 6.925165 CCCATGAATGTAATATTGAGGTTTGC 59.075 38.462 0.00 0.00 0.00 3.68
2237 2296 8.860088 AGTATAAATTATGGGTGAGGCATTTTC 58.140 33.333 0.00 0.00 0.00 2.29
2245 2304 3.259123 GGGTGAGGCATTTTCATTCACTT 59.741 43.478 3.35 0.00 38.49 3.16
2273 2333 0.036732 TGCATGAGTGTCCACCTTCC 59.963 55.000 0.00 0.00 0.00 3.46
2274 2334 0.036732 GCATGAGTGTCCACCTTCCA 59.963 55.000 0.00 0.00 0.00 3.53
2284 2344 0.911769 CCACCTTCCATCAGCTGGTA 59.088 55.000 15.13 0.00 46.08 3.25
2322 2383 7.363355 CCTTGAATAGTACAGAGACATGACTGT 60.363 40.741 20.87 20.87 46.81 3.55
2350 2411 8.644318 ATCATTGCTGAATTTTATTCTTCTGC 57.356 30.769 7.07 7.07 42.93 4.26
2360 2421 9.346725 GAATTTTATTCTTCTGCTAGTTGTTGG 57.653 33.333 0.00 0.00 0.00 3.77
2371 2432 4.099266 TGCTAGTTGTTGGCACTTGAATTT 59.901 37.500 0.00 0.00 38.49 1.82
2399 2460 6.358974 TTGTCTTATCTGATGTCCAGTTCA 57.641 37.500 0.00 0.00 43.38 3.18
2412 2473 4.709397 TGTCCAGTTCAAAACTTCCAATGT 59.291 37.500 0.00 0.00 40.46 2.71
2414 2475 3.803778 CCAGTTCAAAACTTCCAATGTGC 59.196 43.478 0.00 0.00 40.46 4.57
2451 2515 7.176865 TGAGATGTGTAAGTCAGTAGCTAACTT 59.823 37.037 12.66 12.66 35.76 2.66
2463 2527 8.251721 GTCAGTAGCTAACTTGAGATTCCTTTA 58.748 37.037 0.00 0.00 35.76 1.85
2467 2531 5.582665 AGCTAACTTGAGATTCCTTTAAGCG 59.417 40.000 0.00 0.00 0.00 4.68
2469 2533 6.534079 GCTAACTTGAGATTCCTTTAAGCGTA 59.466 38.462 0.00 0.00 0.00 4.42
2479 2543 8.192110 AGATTCCTTTAAGCGTACAAACAAAAA 58.808 29.630 0.00 0.00 0.00 1.94
2501 2565 5.786401 AATTTCTAACATGAGAGCGACAC 57.214 39.130 0.00 0.00 0.00 3.67
2507 2571 1.003580 ACATGAGAGCGACACCCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
2510 2574 2.695359 TGAGAGCGACACCCAAATTAC 58.305 47.619 0.00 0.00 0.00 1.89
2511 2575 2.037902 TGAGAGCGACACCCAAATTACA 59.962 45.455 0.00 0.00 0.00 2.41
2528 2594 4.568072 TTACAAGCCACTATGGATGTGT 57.432 40.909 13.81 10.00 40.96 3.72
2529 2595 2.715046 ACAAGCCACTATGGATGTGTG 58.285 47.619 0.00 0.00 40.96 3.82
2556 2622 5.759506 TTTTGGCGGGTATTATGTATGTG 57.240 39.130 0.00 0.00 0.00 3.21
2560 2626 2.039348 GCGGGTATTATGTATGTGGGGT 59.961 50.000 0.00 0.00 0.00 4.95
2575 2642 4.746466 TGTGGGGTTAATTGGAGATTGTT 58.254 39.130 0.00 0.00 0.00 2.83
2593 2660 9.860898 GAGATTGTTTCATAAGCCACTAAAAAT 57.139 29.630 0.00 0.00 0.00 1.82
2631 2700 2.497675 TCTCTGAAGAATCAAGTCCCCG 59.502 50.000 0.00 0.00 34.49 5.73
2641 2767 0.685097 CAAGTCCCCGAAACTCCTGA 59.315 55.000 0.00 0.00 0.00 3.86
2662 2788 6.088016 TGATTGCTTACTTGCTTCAACAAT 57.912 33.333 0.00 0.00 0.00 2.71
2666 2792 5.900425 TGCTTACTTGCTTCAACAATGAAA 58.100 33.333 0.00 0.00 44.64 2.69
2684 2813 3.568007 TGAAACCACCAATCTTGCACTAC 59.432 43.478 0.00 0.00 0.00 2.73
2686 2815 4.634012 AACCACCAATCTTGCACTACTA 57.366 40.909 0.00 0.00 0.00 1.82
2687 2816 4.207891 ACCACCAATCTTGCACTACTAG 57.792 45.455 0.00 0.00 0.00 2.57
2688 2817 3.583086 ACCACCAATCTTGCACTACTAGT 59.417 43.478 0.00 0.00 0.00 2.57
2689 2818 4.184629 CCACCAATCTTGCACTACTAGTC 58.815 47.826 0.00 0.00 0.00 2.59
2690 2819 4.322725 CCACCAATCTTGCACTACTAGTCA 60.323 45.833 0.00 0.00 0.00 3.41
2691 2820 4.867047 CACCAATCTTGCACTACTAGTCAG 59.133 45.833 0.00 0.00 0.00 3.51
2692 2821 4.772624 ACCAATCTTGCACTACTAGTCAGA 59.227 41.667 0.00 0.00 0.00 3.27
2693 2822 5.105554 ACCAATCTTGCACTACTAGTCAGAG 60.106 44.000 0.00 0.00 0.00 3.35
2694 2823 5.105554 CCAATCTTGCACTACTAGTCAGAGT 60.106 44.000 0.00 0.00 0.00 3.24
2695 2824 5.828299 ATCTTGCACTACTAGTCAGAGTC 57.172 43.478 0.00 0.00 0.00 3.36
2696 2825 4.652822 TCTTGCACTACTAGTCAGAGTCA 58.347 43.478 0.00 0.00 0.00 3.41
2700 2829 6.438259 TGCACTACTAGTCAGAGTCATAAC 57.562 41.667 0.00 0.00 0.00 1.89
2777 2906 7.250569 AGCATACATGGAAAACAATAACTTCG 58.749 34.615 0.00 0.00 0.00 3.79
2780 2909 5.685841 ACATGGAAAACAATAACTTCGTCG 58.314 37.500 0.00 0.00 0.00 5.12
2847 2976 1.376424 CCCACAGCAAGCGATGTCT 60.376 57.895 0.00 0.00 40.56 3.41
2854 2983 1.416813 GCAAGCGATGTCTGTCTCGG 61.417 60.000 0.00 0.00 35.48 4.63
2899 3040 5.390991 GCACTTTACTTGACATTAGCTGACC 60.391 44.000 0.00 0.00 0.00 4.02
2907 3048 1.995626 ATTAGCTGACCGTGGGCCT 60.996 57.895 4.53 0.00 0.00 5.19
2977 3118 1.430632 CGCCAAGCAAGATCGCATT 59.569 52.632 0.00 0.00 0.00 3.56
2995 3136 1.256812 TTGATGCAGAGGTCGTCTCA 58.743 50.000 10.19 0.00 44.81 3.27
3004 3145 2.158957 AGAGGTCGTCTCAAAACTGCAA 60.159 45.455 10.19 0.00 44.81 4.08
3176 3317 5.740224 GCAAGGATGTGAGTTAGCTGCTATA 60.740 44.000 10.64 0.00 0.00 1.31
3177 3318 6.462500 CAAGGATGTGAGTTAGCTGCTATAT 58.538 40.000 10.64 1.92 0.00 0.86
3184 3325 4.103153 TGAGTTAGCTGCTATATGGGCTTT 59.897 41.667 10.64 0.00 36.40 3.51
3290 3432 7.145932 GGTAACAACATTTCTCTGCTAATGT 57.854 36.000 0.00 0.00 44.50 2.71
3291 3433 8.263940 GGTAACAACATTTCTCTGCTAATGTA 57.736 34.615 0.00 0.00 42.47 2.29
3292 3434 8.893727 GGTAACAACATTTCTCTGCTAATGTAT 58.106 33.333 0.00 0.00 42.47 2.29
3392 3535 3.938289 TTTGCTAGACAAATGCATGCA 57.062 38.095 25.04 25.04 43.35 3.96
3393 3536 3.938289 TTGCTAGACAAATGCATGCAA 57.062 38.095 26.68 12.70 36.55 4.08
3394 3537 3.497297 TGCTAGACAAATGCATGCAAG 57.503 42.857 26.68 19.35 0.00 4.01
3395 3538 2.821378 TGCTAGACAAATGCATGCAAGT 59.179 40.909 26.68 22.46 0.00 3.16
3396 3539 3.256383 TGCTAGACAAATGCATGCAAGTT 59.744 39.130 26.68 18.68 0.00 2.66
3397 3540 4.458642 TGCTAGACAAATGCATGCAAGTTA 59.541 37.500 26.68 15.34 0.00 2.24
3398 3541 5.125900 TGCTAGACAAATGCATGCAAGTTAT 59.874 36.000 26.68 11.38 0.00 1.89
3399 3542 6.038356 GCTAGACAAATGCATGCAAGTTATT 58.962 36.000 26.68 11.35 0.00 1.40
3400 3543 6.020121 GCTAGACAAATGCATGCAAGTTATTG 60.020 38.462 26.68 23.29 39.57 1.90
3414 3557 6.397831 CAAGTTATTGCATGGTGTTGAATG 57.602 37.500 0.00 0.00 0.00 2.67
3420 3563 3.419264 GCATGGTGTTGAATGCGATAA 57.581 42.857 0.00 0.00 39.78 1.75
3421 3564 3.968649 GCATGGTGTTGAATGCGATAAT 58.031 40.909 0.00 0.00 39.78 1.28
3422 3565 5.107109 GCATGGTGTTGAATGCGATAATA 57.893 39.130 0.00 0.00 39.78 0.98
3423 3566 5.518812 GCATGGTGTTGAATGCGATAATAA 58.481 37.500 0.00 0.00 39.78 1.40
3424 3567 6.151691 GCATGGTGTTGAATGCGATAATAAT 58.848 36.000 0.00 0.00 39.78 1.28
3425 3568 6.306356 GCATGGTGTTGAATGCGATAATAATC 59.694 38.462 0.00 0.00 39.78 1.75
3459 3602 9.918630 ATGTTTTTCTATAATATCAAGCCATGC 57.081 29.630 0.00 0.00 0.00 4.06
3460 3603 9.135189 TGTTTTTCTATAATATCAAGCCATGCT 57.865 29.630 0.00 0.00 42.56 3.79
3461 3604 9.617975 GTTTTTCTATAATATCAAGCCATGCTC 57.382 33.333 0.00 0.00 38.25 4.26
3462 3605 8.922931 TTTTCTATAATATCAAGCCATGCTCA 57.077 30.769 0.00 0.00 38.25 4.26
3463 3606 9.524496 TTTTCTATAATATCAAGCCATGCTCAT 57.476 29.630 0.00 0.00 38.25 2.90
3464 3607 8.502105 TTCTATAATATCAAGCCATGCTCATG 57.498 34.615 2.97 2.97 38.25 3.07
3465 3608 7.627311 TCTATAATATCAAGCCATGCTCATGT 58.373 34.615 8.81 0.00 38.25 3.21
3466 3609 6.754702 ATAATATCAAGCCATGCTCATGTC 57.245 37.500 8.81 0.00 38.25 3.06
3467 3610 2.430248 ATCAAGCCATGCTCATGTCA 57.570 45.000 8.81 0.00 38.25 3.58
3468 3611 2.430248 TCAAGCCATGCTCATGTCAT 57.570 45.000 8.81 0.00 38.25 3.06
3469 3612 3.564053 TCAAGCCATGCTCATGTCATA 57.436 42.857 8.81 0.00 38.25 2.15
3470 3613 3.888583 TCAAGCCATGCTCATGTCATAA 58.111 40.909 8.81 0.00 38.25 1.90
3471 3614 3.881089 TCAAGCCATGCTCATGTCATAAG 59.119 43.478 8.81 0.00 38.25 1.73
3472 3615 2.228059 AGCCATGCTCATGTCATAAGC 58.772 47.619 0.45 0.45 37.11 3.09
3498 3641 1.014352 AGGAACTTGCACACAACGAC 58.986 50.000 0.00 0.00 27.25 4.34
3501 3644 2.159435 GGAACTTGCACACAACGACTTT 60.159 45.455 0.00 0.00 0.00 2.66
3536 3679 3.319137 TTCTGGAGTCTGTTCATTCGG 57.681 47.619 0.00 0.00 0.00 4.30
3553 3709 5.122239 TCATTCGGCAGTTTGAATACTTGAG 59.878 40.000 0.00 0.00 33.23 3.02
3559 3715 6.742718 CGGCAGTTTGAATACTTGAGTTTATG 59.257 38.462 0.00 0.00 0.00 1.90
3561 3717 7.538678 GGCAGTTTGAATACTTGAGTTTATGTG 59.461 37.037 0.00 0.00 0.00 3.21
3565 3721 8.905702 GTTTGAATACTTGAGTTTATGTGCAAG 58.094 33.333 0.00 0.00 42.46 4.01
3599 3755 0.249238 GATGCGCAGACGGAGAGAAT 60.249 55.000 18.32 0.00 45.20 2.40
3605 3761 0.803768 CAGACGGAGAGAATGCCACG 60.804 60.000 0.00 0.00 0.00 4.94
3608 3764 2.169789 CGGAGAGAATGCCACGCTG 61.170 63.158 0.00 0.00 0.00 5.18
3617 3773 1.538047 ATGCCACGCTGACAGAATTT 58.462 45.000 6.65 0.00 0.00 1.82
3662 3818 1.039785 TGGACTCGCTGATCCCTCTG 61.040 60.000 0.00 0.00 33.69 3.35
3701 3857 1.942677 TGTTCGACAACAACCGTGAT 58.057 45.000 0.00 0.00 39.69 3.06
3795 3951 1.003696 GGCTCTGCTTCCAGGTAAACT 59.996 52.381 0.00 0.00 39.61 2.66
3814 3970 1.528586 CTCCAAAACAGTGCGACTCTG 59.471 52.381 0.00 7.17 38.68 3.35
3860 4089 5.924356 TGATCTGACCAAAAACACTACTGA 58.076 37.500 0.00 0.00 0.00 3.41
3874 4103 5.881447 ACACTACTGATTCAGATGTACGAC 58.119 41.667 20.33 0.00 35.18 4.34
3944 4180 0.960861 GGTAAGCAGGGCAAGACACC 60.961 60.000 0.00 0.00 0.00 4.16
3977 4213 5.065218 CCTGTACTGTACCAGATCAAATTGC 59.935 44.000 14.91 0.00 35.18 3.56
4090 4329 1.809619 CGACACGATGGACGCCAAT 60.810 57.895 2.68 0.00 46.94 3.16
4114 4353 2.893398 GGCGAGGTCACCTTCGAT 59.107 61.111 16.93 0.00 31.76 3.59
4156 4395 3.474570 GACAGCGCCCTCCAGGAT 61.475 66.667 2.29 0.00 38.24 3.24
4180 4419 4.180946 CTCTCGTCCCTGCGACCG 62.181 72.222 0.00 0.00 38.36 4.79
4197 4436 1.448540 CGGGGCAGCAGTAGACTTG 60.449 63.158 0.00 0.00 0.00 3.16
4199 4438 0.036875 GGGGCAGCAGTAGACTTGTT 59.963 55.000 0.00 0.00 0.00 2.83
4253 4498 5.241949 GTCTCCTGTCTGAACTCTGTCTTTA 59.758 44.000 0.00 0.00 0.00 1.85
4254 4499 5.475220 TCTCCTGTCTGAACTCTGTCTTTAG 59.525 44.000 0.00 0.00 0.00 1.85
4256 4502 5.598830 TCCTGTCTGAACTCTGTCTTTAGTT 59.401 40.000 0.00 0.00 38.62 2.24
4300 4548 1.737793 GGGGAACAAACAGTAGATGCG 59.262 52.381 0.00 0.00 0.00 4.73
4301 4549 2.614481 GGGGAACAAACAGTAGATGCGA 60.614 50.000 0.00 0.00 0.00 5.10
4313 4561 4.383602 ATGCGACGCCGTTTGTGC 62.384 61.111 18.69 0.00 38.24 4.57
4363 4619 3.118905 GGGAGCACCTATTCATCTGTC 57.881 52.381 0.00 0.00 35.85 3.51
4421 4678 9.388506 AGTCTAGGATTTGTAATTTGTCTCATG 57.611 33.333 0.00 0.00 0.00 3.07
4440 4697 3.121929 TGCCTTATCTTCAGGAGAGGT 57.878 47.619 0.00 0.00 37.93 3.85
4488 4768 9.624373 GGCTCAATAATACATCCATCATATTCT 57.376 33.333 0.00 0.00 0.00 2.40
4497 4777 5.243060 ACATCCATCATATTCTGCACCAATG 59.757 40.000 0.00 0.00 0.00 2.82
4498 4778 4.795469 TCCATCATATTCTGCACCAATGT 58.205 39.130 0.00 0.00 0.00 2.71
4499 4779 4.823442 TCCATCATATTCTGCACCAATGTC 59.177 41.667 0.00 0.00 0.00 3.06
4500 4780 4.825634 CCATCATATTCTGCACCAATGTCT 59.174 41.667 0.00 0.00 0.00 3.41
4501 4781 5.048921 CCATCATATTCTGCACCAATGTCTC 60.049 44.000 0.00 0.00 0.00 3.36
4506 4787 1.552337 TCTGCACCAATGTCTCTCTCC 59.448 52.381 0.00 0.00 0.00 3.71
4516 4797 1.719378 TGTCTCTCTCCCTCTCCCTTT 59.281 52.381 0.00 0.00 0.00 3.11
4523 4804 5.850278 TCTCTCCCTCTCCCTTTTAACATA 58.150 41.667 0.00 0.00 0.00 2.29
4541 4826 6.420913 AACATAGTATCAGCCTAACCGATT 57.579 37.500 0.00 0.00 0.00 3.34
4551 4837 3.264964 AGCCTAACCGATTCAAACCCTAA 59.735 43.478 0.00 0.00 0.00 2.69
4552 4838 4.079958 AGCCTAACCGATTCAAACCCTAAT 60.080 41.667 0.00 0.00 0.00 1.73
4561 4849 1.889829 TCAAACCCTAATTGTTGGCCG 59.110 47.619 0.00 0.00 0.00 6.13
4562 4850 0.606096 AAACCCTAATTGTTGGCCGC 59.394 50.000 0.00 0.00 0.00 6.53
4563 4851 1.254975 AACCCTAATTGTTGGCCGCC 61.255 55.000 1.04 1.04 0.00 6.13
4564 4852 1.680651 CCCTAATTGTTGGCCGCCA 60.681 57.895 8.43 8.43 0.00 5.69
4568 4856 1.272212 CTAATTGTTGGCCGCCACTTT 59.728 47.619 13.00 6.10 30.78 2.66
4569 4857 0.467804 AATTGTTGGCCGCCACTTTT 59.532 45.000 13.00 0.78 30.78 2.27
4652 4942 4.867599 CTAGGGTTCGTCCGCCGC 62.868 72.222 0.00 0.00 37.00 6.53
4687 4978 3.821033 GCTGCCCTAGAAAGTCTTTTTCA 59.179 43.478 0.00 0.00 0.00 2.69
4781 5080 0.881118 ATGCTTGATCGGTTTGCGTT 59.119 45.000 0.00 0.00 0.00 4.84
4807 5107 3.570638 TCGCCGTCGATCCTCGTC 61.571 66.667 0.00 0.00 41.35 4.20
4808 5108 3.872728 CGCCGTCGATCCTCGTCA 61.873 66.667 0.00 0.00 41.35 4.35
4812 5112 2.483745 GTCGATCCTCGTCACGCA 59.516 61.111 0.00 0.00 41.35 5.24
4824 5124 0.818296 GTCACGCACCTCTACTCCAT 59.182 55.000 0.00 0.00 0.00 3.41
4867 5167 3.536917 CATCGACCCGGCAGCCTA 61.537 66.667 10.54 0.00 0.00 3.93
5049 5355 3.580193 CCCGTCGATCTACGCCGT 61.580 66.667 13.89 0.00 41.75 5.68
5057 5363 0.314302 GATCTACGCCGTGCCTGTAT 59.686 55.000 0.00 0.00 0.00 2.29
5081 5387 4.657824 CCTGCCGACCGTCGTTGT 62.658 66.667 19.13 0.00 38.40 3.32
5082 5388 2.660552 CTGCCGACCGTCGTTGTT 60.661 61.111 19.13 0.00 38.40 2.83
5099 5405 1.347707 TGTTGGCTTCATCTCGGACTT 59.652 47.619 0.00 0.00 0.00 3.01
5103 5409 0.179124 GCTTCATCTCGGACTTCGCT 60.179 55.000 0.00 0.00 39.05 4.93
5180 5487 4.175489 CTCGCCGTCACGATCCGT 62.175 66.667 0.00 0.00 42.02 4.69
5189 5496 2.480802 CGTCACGATCCGTCTCATCTAT 59.519 50.000 0.00 0.00 38.32 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.223177 TCAAAATTGGAAAACAAAGAATGCAT 57.777 26.923 0.00 0.00 43.46 3.96
1 2 7.621428 TCAAAATTGGAAAACAAAGAATGCA 57.379 28.000 0.00 0.00 43.46 3.96
2 3 8.960075 CAATCAAAATTGGAAAACAAAGAATGC 58.040 29.630 0.00 0.00 43.46 3.56
17 18 7.977293 TGCAGATAATGAGACCAATCAAAATTG 59.023 33.333 0.00 0.00 41.69 2.32
18 19 8.070034 TGCAGATAATGAGACCAATCAAAATT 57.930 30.769 0.00 0.00 31.76 1.82
19 20 7.649533 TGCAGATAATGAGACCAATCAAAAT 57.350 32.000 0.00 0.00 31.76 1.82
20 21 7.649533 ATGCAGATAATGAGACCAATCAAAA 57.350 32.000 0.00 0.00 31.76 2.44
21 22 7.649533 AATGCAGATAATGAGACCAATCAAA 57.350 32.000 0.00 0.00 31.76 2.69
22 23 7.123098 ACAAATGCAGATAATGAGACCAATCAA 59.877 33.333 0.00 0.00 31.76 2.57
23 24 6.604396 ACAAATGCAGATAATGAGACCAATCA 59.396 34.615 0.00 0.00 0.00 2.57
24 25 7.035840 ACAAATGCAGATAATGAGACCAATC 57.964 36.000 0.00 0.00 0.00 2.67
25 26 7.414222 AACAAATGCAGATAATGAGACCAAT 57.586 32.000 0.00 0.00 0.00 3.16
26 27 6.839124 AACAAATGCAGATAATGAGACCAA 57.161 33.333 0.00 0.00 0.00 3.67
27 28 6.839124 AAACAAATGCAGATAATGAGACCA 57.161 33.333 0.00 0.00 0.00 4.02
41 42 9.965824 ACTGGCAATACTATATTAAACAAATGC 57.034 29.630 0.00 0.00 0.00 3.56
52 53 8.144478 CAGTCACAACTACTGGCAATACTATAT 58.856 37.037 0.00 0.00 40.56 0.86
55 56 5.720202 CAGTCACAACTACTGGCAATACTA 58.280 41.667 0.00 0.00 40.56 1.82
58 59 3.007940 AGCAGTCACAACTACTGGCAATA 59.992 43.478 5.47 0.00 43.71 1.90
211 216 6.183360 CCGGCTATTTAAAACTTTGATTGTGC 60.183 38.462 0.00 0.00 0.00 4.57
213 218 5.867174 GCCGGCTATTTAAAACTTTGATTGT 59.133 36.000 22.15 0.00 0.00 2.71
214 219 6.099341 AGCCGGCTATTTAAAACTTTGATTG 58.901 36.000 31.86 0.00 0.00 2.67
215 220 6.280855 AGCCGGCTATTTAAAACTTTGATT 57.719 33.333 31.86 0.00 0.00 2.57
217 222 8.400186 GTTATAGCCGGCTATTTAAAACTTTGA 58.600 33.333 44.65 24.72 39.65 2.69
218 223 7.375017 CGTTATAGCCGGCTATTTAAAACTTTG 59.625 37.037 44.65 26.98 39.65 2.77
219 224 7.412063 CGTTATAGCCGGCTATTTAAAACTTT 58.588 34.615 44.65 25.26 39.65 2.66
220 225 6.017687 CCGTTATAGCCGGCTATTTAAAACTT 60.018 38.462 44.65 25.94 39.65 2.66
221 226 5.467735 CCGTTATAGCCGGCTATTTAAAACT 59.532 40.000 44.65 26.62 39.65 2.66
222 227 5.682869 CCGTTATAGCCGGCTATTTAAAAC 58.317 41.667 44.65 37.40 39.65 2.43
223 228 5.927954 CCGTTATAGCCGGCTATTTAAAA 57.072 39.130 44.65 32.18 39.65 1.52
234 239 2.199236 GTCCTCAAACCGTTATAGCCG 58.801 52.381 0.00 0.00 0.00 5.52
235 240 2.199236 CGTCCTCAAACCGTTATAGCC 58.801 52.381 0.00 0.00 0.00 3.93
236 241 2.199236 CCGTCCTCAAACCGTTATAGC 58.801 52.381 0.00 0.00 0.00 2.97
237 242 3.184541 CACCGTCCTCAAACCGTTATAG 58.815 50.000 0.00 0.00 0.00 1.31
238 243 2.674747 GCACCGTCCTCAAACCGTTATA 60.675 50.000 0.00 0.00 0.00 0.98
239 244 1.942586 GCACCGTCCTCAAACCGTTAT 60.943 52.381 0.00 0.00 0.00 1.89
240 245 0.600782 GCACCGTCCTCAAACCGTTA 60.601 55.000 0.00 0.00 0.00 3.18
241 246 1.890510 GCACCGTCCTCAAACCGTT 60.891 57.895 0.00 0.00 0.00 4.44
242 247 2.280592 GCACCGTCCTCAAACCGT 60.281 61.111 0.00 0.00 0.00 4.83
243 248 3.047877 GGCACCGTCCTCAAACCG 61.048 66.667 0.00 0.00 0.00 4.44
244 249 3.047877 CGGCACCGTCCTCAAACC 61.048 66.667 0.00 0.00 34.35 3.27
245 250 2.775032 TAGCGGCACCGTCCTCAAAC 62.775 60.000 11.27 0.00 42.09 2.93
246 251 2.102109 TTAGCGGCACCGTCCTCAAA 62.102 55.000 11.27 0.00 42.09 2.69
247 252 2.102109 TTTAGCGGCACCGTCCTCAA 62.102 55.000 11.27 0.00 42.09 3.02
248 253 1.895020 ATTTAGCGGCACCGTCCTCA 61.895 55.000 11.27 0.00 42.09 3.86
249 254 1.153429 ATTTAGCGGCACCGTCCTC 60.153 57.895 11.27 0.00 42.09 3.71
250 255 1.449601 CATTTAGCGGCACCGTCCT 60.450 57.895 11.27 2.72 42.09 3.85
251 256 2.469516 CCATTTAGCGGCACCGTCC 61.470 63.158 11.27 0.00 42.09 4.79
252 257 1.022451 TTCCATTTAGCGGCACCGTC 61.022 55.000 11.27 3.23 42.09 4.79
253 258 1.003112 TTCCATTTAGCGGCACCGT 60.003 52.632 11.27 0.32 42.09 4.83
254 259 1.427819 GTTCCATTTAGCGGCACCG 59.572 57.895 4.30 4.30 43.09 4.94
255 260 1.663379 GGGTTCCATTTAGCGGCACC 61.663 60.000 1.45 0.00 38.94 5.01
256 261 1.663379 GGGGTTCCATTTAGCGGCAC 61.663 60.000 1.45 0.00 0.00 5.01
257 262 1.379309 GGGGTTCCATTTAGCGGCA 60.379 57.895 1.45 0.00 0.00 5.69
258 263 2.125326 GGGGGTTCCATTTAGCGGC 61.125 63.158 0.00 0.00 35.00 6.53
259 264 4.252983 GGGGGTTCCATTTAGCGG 57.747 61.111 0.00 0.00 35.00 5.52
273 278 0.828022 TTGTACATGAGTAGCGGGGG 59.172 55.000 0.00 0.00 0.00 5.40
274 279 2.872245 CAATTGTACATGAGTAGCGGGG 59.128 50.000 0.00 0.00 0.00 5.73
275 280 3.531538 ACAATTGTACATGAGTAGCGGG 58.468 45.455 9.97 0.00 0.00 6.13
276 281 3.555956 GGACAATTGTACATGAGTAGCGG 59.444 47.826 16.26 0.00 0.00 5.52
277 282 4.180817 TGGACAATTGTACATGAGTAGCG 58.819 43.478 19.85 0.00 33.08 4.26
278 283 5.178797 ACTGGACAATTGTACATGAGTAGC 58.821 41.667 23.63 1.08 38.38 3.58
279 284 8.771920 TTTACTGGACAATTGTACATGAGTAG 57.228 34.615 23.63 13.18 38.38 2.57
280 285 9.733556 AATTTACTGGACAATTGTACATGAGTA 57.266 29.630 23.63 18.30 38.38 2.59
281 286 8.635765 AATTTACTGGACAATTGTACATGAGT 57.364 30.769 23.63 19.27 38.38 3.41
318 323 1.802960 CAAATCAGCTATAGCAGGCCG 59.197 52.381 26.07 9.23 45.16 6.13
470 479 4.691216 GCTACTTTACCTTGGTCTTCACTG 59.309 45.833 0.00 0.00 0.00 3.66
484 493 0.748367 GGCTGGGGCTGCTACTTTAC 60.748 60.000 0.00 0.00 38.73 2.01
485 494 1.607612 GGCTGGGGCTGCTACTTTA 59.392 57.895 0.00 0.00 38.73 1.85
557 570 2.641305 GGCAAGATGACAAGAGCAGAT 58.359 47.619 0.00 0.00 0.00 2.90
587 600 4.353383 AACTCACCAGGTACTTCCTTTC 57.647 45.455 0.00 0.00 45.67 2.62
828 845 4.578928 AGAAATCAAAACGGTAAGCACTGT 59.421 37.500 0.00 0.00 46.58 3.55
845 863 2.413453 GACCTGCTTCACACGAGAAATC 59.587 50.000 0.00 0.00 0.00 2.17
928 948 1.308998 ACTTCAGGAAGCAAACACCG 58.691 50.000 8.89 0.00 41.99 4.94
943 963 5.576447 TTGACCAAAGAACCTGAAACTTC 57.424 39.130 0.00 0.00 0.00 3.01
1080 1100 0.037790 ACTTGCTCACGCCTCTTCTC 60.038 55.000 0.00 0.00 34.43 2.87
1089 1109 1.998315 CCTTCATCAGACTTGCTCACG 59.002 52.381 0.00 0.00 0.00 4.35
1152 1172 2.281002 TGCATCCCCATCATCGCG 60.281 61.111 0.00 0.00 0.00 5.87
1200 1226 2.449518 TTCCACAGTGGGAGCCCA 60.450 61.111 20.14 3.58 45.02 5.36
1209 1235 3.521126 AGATGGATACTTGCTTCCACAGT 59.479 43.478 0.00 0.00 44.49 3.55
1221 1247 1.950007 CGCGTCGGAGATGGATACT 59.050 57.895 0.00 0.00 45.11 2.12
1257 1283 3.708631 CCACTATCCTCCTCATGACAAGT 59.291 47.826 0.00 0.00 0.00 3.16
1401 1427 1.544691 TCAAACTCTGAGTACCGCTCC 59.455 52.381 11.30 0.00 43.48 4.70
1413 1439 3.127533 GCGGCCGCATCAAACTCT 61.128 61.111 43.55 0.00 41.49 3.24
1491 1517 2.549778 GCAGTTCTCTGGCTTCAAGTCT 60.550 50.000 0.00 0.00 41.57 3.24
1539 1565 6.180472 ACCGAAATCCATAATCTTCAGTGTT 58.820 36.000 0.00 0.00 0.00 3.32
1671 1697 0.110295 TCACCCCAACAGACCACATG 59.890 55.000 0.00 0.00 0.00 3.21
1698 1724 4.380444 CCAACATACCCGGACAAAAGAATG 60.380 45.833 0.73 0.00 0.00 2.67
1737 1770 7.835822 TGACGAAATCAAACCAATGGAATTAT 58.164 30.769 6.16 0.00 30.69 1.28
1743 1782 4.091800 GCAATGACGAAATCAAACCAATGG 59.908 41.667 0.00 0.00 41.93 3.16
1745 1784 4.880759 TGCAATGACGAAATCAAACCAAT 58.119 34.783 0.00 0.00 41.93 3.16
1750 1789 4.208873 GCAAACTGCAATGACGAAATCAAA 59.791 37.500 0.00 0.00 44.26 2.69
1815 1856 3.605486 GCTGCTTTTCTTGATTAGTTGCG 59.395 43.478 0.00 0.00 0.00 4.85
1866 1913 5.586643 GGACATTTTCCTCAGATGGTAGTTC 59.413 44.000 0.00 0.00 41.95 3.01
1906 1953 1.270550 CACCACTGCAGAACATTTCCC 59.729 52.381 23.35 0.00 0.00 3.97
1907 1954 2.229792 TCACCACTGCAGAACATTTCC 58.770 47.619 23.35 0.00 0.00 3.13
1948 1997 7.915930 ACATTTTCCCCATATGAATCACAAAA 58.084 30.769 3.65 1.63 0.00 2.44
1949 1998 7.493499 ACATTTTCCCCATATGAATCACAAA 57.507 32.000 3.65 0.00 0.00 2.83
1987 2036 5.488262 AAGAAAATCCCAGACCAATTTGG 57.512 39.130 14.02 14.02 45.02 3.28
2010 2059 8.451245 AGGTGGAAACAAGGATATATGAATCAT 58.549 33.333 0.00 0.00 46.06 2.45
2011 2060 7.815383 AGGTGGAAACAAGGATATATGAATCA 58.185 34.615 0.00 0.00 46.06 2.57
2012 2061 8.697507 AAGGTGGAAACAAGGATATATGAATC 57.302 34.615 0.00 0.00 46.06 2.52
2021 2070 9.990868 AAATACTAATAAGGTGGAAACAAGGAT 57.009 29.630 0.00 0.00 46.06 3.24
2022 2071 9.457436 GAAATACTAATAAGGTGGAAACAAGGA 57.543 33.333 0.00 0.00 46.06 3.36
2023 2072 9.462606 AGAAATACTAATAAGGTGGAAACAAGG 57.537 33.333 0.00 0.00 46.06 3.61
2029 2078 9.895138 GGTTGTAGAAATACTAATAAGGTGGAA 57.105 33.333 0.00 0.00 32.49 3.53
2030 2079 9.049050 TGGTTGTAGAAATACTAATAAGGTGGA 57.951 33.333 0.00 0.00 32.49 4.02
2031 2080 9.326413 CTGGTTGTAGAAATACTAATAAGGTGG 57.674 37.037 0.00 0.00 32.49 4.61
2032 2081 8.827677 GCTGGTTGTAGAAATACTAATAAGGTG 58.172 37.037 0.00 0.00 32.49 4.00
2064 2113 5.914635 GTGTCAACGTGATCAATCAACATTT 59.085 36.000 0.00 0.00 38.75 2.32
2090 2139 5.633655 TTTAACTCCCTTCCAACTACACA 57.366 39.130 0.00 0.00 0.00 3.72
2091 2140 6.371825 CAGATTTAACTCCCTTCCAACTACAC 59.628 42.308 0.00 0.00 0.00 2.90
2115 2164 3.391296 GCAAAGATACTCCAGGGGATACA 59.609 47.826 0.00 0.00 39.74 2.29
2118 2167 2.492025 TGCAAAGATACTCCAGGGGAT 58.508 47.619 0.00 0.00 0.00 3.85
2137 2186 9.897744 TCTGTTTCTTAAGTAAATGCAAAGATG 57.102 29.630 1.63 0.00 0.00 2.90
2150 2199 3.560068 CACGGTGCTTCTGTTTCTTAAGT 59.440 43.478 1.63 0.00 32.67 2.24
2155 2204 1.166531 GGCACGGTGCTTCTGTTTCT 61.167 55.000 29.92 0.00 44.28 2.52
2165 2214 1.029408 TACATTCATGGGCACGGTGC 61.029 55.000 24.43 24.43 44.08 5.01
2176 2225 7.975616 GTGTGCAAACCTCAATATTACATTCAT 59.024 33.333 0.00 0.00 0.00 2.57
2182 2231 4.095610 GCGTGTGCAAACCTCAATATTAC 58.904 43.478 0.17 0.00 42.15 1.89
2198 2257 7.307396 CCATAATTTATACTGGAAGAGCGTGTG 60.307 40.741 0.00 0.00 37.43 3.82
2273 2333 2.552743 CAATGCTCCATACCAGCTGATG 59.447 50.000 17.39 11.91 37.79 3.07
2274 2334 2.440627 TCAATGCTCCATACCAGCTGAT 59.559 45.455 17.39 0.00 37.79 2.90
2284 2344 5.121380 ACTATTCAAGGTCAATGCTCCAT 57.879 39.130 0.00 0.00 0.00 3.41
2350 2411 4.911610 CGAAATTCAAGTGCCAACAACTAG 59.088 41.667 0.00 0.00 0.00 2.57
2360 2421 7.965107 AGATAAGACAAATCGAAATTCAAGTGC 59.035 33.333 0.00 0.00 0.00 4.40
2371 2432 6.127338 ACTGGACATCAGATAAGACAAATCGA 60.127 38.462 0.00 0.00 46.18 3.59
2399 2460 4.486125 AACTTGGCACATTGGAAGTTTT 57.514 36.364 0.00 0.00 39.30 2.43
2412 2473 3.953612 ACACATCTCAAAGAAACTTGGCA 59.046 39.130 0.00 0.00 0.00 4.92
2414 2475 7.012327 TGACTTACACATCTCAAAGAAACTTGG 59.988 37.037 0.00 0.00 0.00 3.61
2451 2515 5.992829 TGTTTGTACGCTTAAAGGAATCTCA 59.007 36.000 0.00 0.00 0.00 3.27
2479 2543 4.631813 GGTGTCGCTCTCATGTTAGAAATT 59.368 41.667 0.00 0.00 0.00 1.82
2484 2548 1.204704 TGGGTGTCGCTCTCATGTTAG 59.795 52.381 0.00 0.00 0.00 2.34
2485 2549 1.262417 TGGGTGTCGCTCTCATGTTA 58.738 50.000 0.00 0.00 0.00 2.41
2486 2550 0.396435 TTGGGTGTCGCTCTCATGTT 59.604 50.000 0.00 0.00 0.00 2.71
2487 2551 0.396435 TTTGGGTGTCGCTCTCATGT 59.604 50.000 0.00 0.00 0.00 3.21
2488 2552 1.742761 ATTTGGGTGTCGCTCTCATG 58.257 50.000 0.00 0.00 0.00 3.07
2489 2553 2.496899 AATTTGGGTGTCGCTCTCAT 57.503 45.000 0.00 0.00 0.00 2.90
2491 2555 2.695359 TGTAATTTGGGTGTCGCTCTC 58.305 47.619 0.00 0.00 0.00 3.20
2499 2563 4.142182 CCATAGTGGCTTGTAATTTGGGTG 60.142 45.833 0.00 0.00 0.00 4.61
2501 2565 4.277476 TCCATAGTGGCTTGTAATTTGGG 58.723 43.478 0.00 0.00 37.47 4.12
2507 2571 4.260985 CACACATCCATAGTGGCTTGTAA 58.739 43.478 0.00 0.00 41.21 2.41
2510 2574 2.715046 ACACACATCCATAGTGGCTTG 58.285 47.619 0.00 0.00 41.21 4.01
2511 2575 3.439857 AACACACATCCATAGTGGCTT 57.560 42.857 0.00 0.00 41.21 4.35
2551 2617 6.086011 ACAATCTCCAATTAACCCCACATA 57.914 37.500 0.00 0.00 0.00 2.29
2552 2618 4.946646 ACAATCTCCAATTAACCCCACAT 58.053 39.130 0.00 0.00 0.00 3.21
2553 2619 4.396357 ACAATCTCCAATTAACCCCACA 57.604 40.909 0.00 0.00 0.00 4.17
2554 2620 5.245075 TGAAACAATCTCCAATTAACCCCAC 59.755 40.000 0.00 0.00 0.00 4.61
2555 2621 5.398236 TGAAACAATCTCCAATTAACCCCA 58.602 37.500 0.00 0.00 0.00 4.96
2556 2622 5.993748 TGAAACAATCTCCAATTAACCCC 57.006 39.130 0.00 0.00 0.00 4.95
2560 2626 8.250332 GTGGCTTATGAAACAATCTCCAATTAA 58.750 33.333 0.00 0.00 0.00 1.40
2575 2642 8.811017 TCAATTCCATTTTTAGTGGCTTATGAA 58.189 29.630 0.00 0.00 36.66 2.57
2613 2682 3.334583 TTCGGGGACTTGATTCTTCAG 57.665 47.619 0.00 0.00 32.27 3.02
2622 2691 0.685097 TCAGGAGTTTCGGGGACTTG 59.315 55.000 0.00 0.00 0.00 3.16
2631 2700 4.457257 AGCAAGTAAGCAATCAGGAGTTTC 59.543 41.667 0.00 0.00 36.85 2.78
2641 2767 6.088016 TCATTGTTGAAGCAAGTAAGCAAT 57.912 33.333 0.00 0.00 36.85 3.56
2662 2788 2.665165 AGTGCAAGATTGGTGGTTTCA 58.335 42.857 0.00 0.00 0.00 2.69
2666 2792 3.583086 ACTAGTAGTGCAAGATTGGTGGT 59.417 43.478 0.85 0.00 0.00 4.16
2684 2813 7.012515 ACGACATTAGGTTATGACTCTGACTAG 59.987 40.741 0.00 0.00 0.00 2.57
2686 2815 5.652891 ACGACATTAGGTTATGACTCTGACT 59.347 40.000 0.00 0.00 0.00 3.41
2687 2816 5.892568 ACGACATTAGGTTATGACTCTGAC 58.107 41.667 0.00 0.00 0.00 3.51
2688 2817 6.525578 AACGACATTAGGTTATGACTCTGA 57.474 37.500 0.00 0.00 0.00 3.27
2689 2818 6.590292 ACAAACGACATTAGGTTATGACTCTG 59.410 38.462 0.00 0.00 0.00 3.35
2690 2819 6.698380 ACAAACGACATTAGGTTATGACTCT 58.302 36.000 0.00 0.00 0.00 3.24
2691 2820 6.963049 ACAAACGACATTAGGTTATGACTC 57.037 37.500 0.00 0.00 0.00 3.36
2692 2821 7.442969 TCAAACAAACGACATTAGGTTATGACT 59.557 33.333 0.00 0.00 0.00 3.41
2693 2822 7.577979 TCAAACAAACGACATTAGGTTATGAC 58.422 34.615 0.00 0.00 0.00 3.06
2694 2823 7.731882 TCAAACAAACGACATTAGGTTATGA 57.268 32.000 0.00 0.00 0.00 2.15
2695 2824 8.020819 ACATCAAACAAACGACATTAGGTTATG 58.979 33.333 0.00 0.00 0.00 1.90
2696 2825 8.020819 CACATCAAACAAACGACATTAGGTTAT 58.979 33.333 0.00 0.00 0.00 1.89
2700 2829 4.616802 GCACATCAAACAAACGACATTAGG 59.383 41.667 0.00 0.00 0.00 2.69
2777 2906 3.056891 TGGAAATCAAATCTTTGGCCGAC 60.057 43.478 0.00 0.00 38.66 4.79
2780 2909 4.221482 AGACTGGAAATCAAATCTTTGGCC 59.779 41.667 0.00 0.00 38.66 5.36
2847 2976 0.836400 AGAAAAGGGAGCCCGAGACA 60.836 55.000 0.00 0.00 41.95 3.41
2854 2983 3.263261 CGAAGAAGTAGAAAAGGGAGCC 58.737 50.000 0.00 0.00 0.00 4.70
2899 3040 2.036958 TCATCATAAACAGGCCCACG 57.963 50.000 0.00 0.00 0.00 4.94
2907 3048 6.899393 AGAGCTGGTTTTTCATCATAAACA 57.101 33.333 0.00 0.00 36.27 2.83
2977 3118 1.256812 TTGAGACGACCTCTGCATCA 58.743 50.000 10.03 0.00 42.44 3.07
2995 3136 4.141233 AGCATTGAACCTTTGCAGTTTT 57.859 36.364 0.00 0.00 38.84 2.43
3004 3145 6.721208 TCAATTTCCTTCTAGCATTGAACCTT 59.279 34.615 0.00 0.00 32.25 3.50
3049 3190 0.535780 CCACTTTGCTGCTCAGGACA 60.536 55.000 0.00 0.00 0.00 4.02
3176 3317 6.777782 TGTTTTGAATATTGGAAAAGCCCAT 58.222 32.000 0.00 0.00 35.87 4.00
3177 3318 6.179906 TGTTTTGAATATTGGAAAAGCCCA 57.820 33.333 0.00 0.00 34.97 5.36
3258 3400 7.424803 CAGAGAAATGTTGTTACCAATGTTCA 58.575 34.615 0.00 0.00 32.11 3.18
3259 3401 6.363357 GCAGAGAAATGTTGTTACCAATGTTC 59.637 38.462 0.00 0.00 32.11 3.18
3260 3402 6.040842 AGCAGAGAAATGTTGTTACCAATGTT 59.959 34.615 0.00 0.00 32.11 2.71
3261 3403 5.536161 AGCAGAGAAATGTTGTTACCAATGT 59.464 36.000 0.00 0.00 32.11 2.71
3262 3404 6.017400 AGCAGAGAAATGTTGTTACCAATG 57.983 37.500 0.00 0.00 32.11 2.82
3263 3405 7.759489 TTAGCAGAGAAATGTTGTTACCAAT 57.241 32.000 0.00 0.00 32.11 3.16
3264 3406 7.230510 ACATTAGCAGAGAAATGTTGTTACCAA 59.769 33.333 0.00 0.00 42.22 3.67
3265 3407 6.714810 ACATTAGCAGAGAAATGTTGTTACCA 59.285 34.615 0.00 0.00 42.22 3.25
3266 3408 7.145932 ACATTAGCAGAGAAATGTTGTTACC 57.854 36.000 0.00 0.00 42.22 2.85
3282 3424 7.825681 ACAATTGCTGTGTTTATACATTAGCA 58.174 30.769 17.70 17.70 46.38 3.49
3284 3426 9.838975 TGAACAATTGCTGTGTTTATACATTAG 57.161 29.630 5.05 0.00 39.29 1.73
3287 3429 9.539825 TTTTGAACAATTGCTGTGTTTATACAT 57.460 25.926 5.05 0.00 39.29 2.29
3290 3432 9.539825 ACATTTTGAACAATTGCTGTGTTTATA 57.460 25.926 5.05 0.00 39.29 0.98
3291 3433 8.336806 CACATTTTGAACAATTGCTGTGTTTAT 58.663 29.630 5.05 0.00 39.29 1.40
3292 3434 7.201591 CCACATTTTGAACAATTGCTGTGTTTA 60.202 33.333 5.05 0.00 39.29 2.01
3303 3445 7.581213 TGAGACTTACCACATTTTGAACAAT 57.419 32.000 0.00 0.00 0.00 2.71
3392 3535 4.931002 GCATTCAACACCATGCAATAACTT 59.069 37.500 0.00 0.00 44.49 2.66
3393 3536 4.497300 GCATTCAACACCATGCAATAACT 58.503 39.130 0.00 0.00 44.49 2.24
3394 3537 3.304026 CGCATTCAACACCATGCAATAAC 59.696 43.478 0.00 0.00 45.23 1.89
3395 3538 3.192212 TCGCATTCAACACCATGCAATAA 59.808 39.130 0.00 0.00 45.23 1.40
3396 3539 2.751806 TCGCATTCAACACCATGCAATA 59.248 40.909 0.00 0.00 45.23 1.90
3397 3540 1.545136 TCGCATTCAACACCATGCAAT 59.455 42.857 0.00 0.00 45.23 3.56
3398 3541 0.957362 TCGCATTCAACACCATGCAA 59.043 45.000 0.00 0.00 45.23 4.08
3399 3542 1.175654 ATCGCATTCAACACCATGCA 58.824 45.000 5.09 0.00 45.23 3.96
3400 3543 3.419264 TTATCGCATTCAACACCATGC 57.581 42.857 0.00 0.00 42.12 4.06
3401 3544 6.520790 CGATTATTATCGCATTCAACACCATG 59.479 38.462 0.61 0.00 46.15 3.66
3402 3545 6.602179 CGATTATTATCGCATTCAACACCAT 58.398 36.000 0.61 0.00 46.15 3.55
3403 3546 5.984627 CGATTATTATCGCATTCAACACCA 58.015 37.500 0.61 0.00 46.15 4.17
3433 3576 9.918630 GCATGGCTTGATATTATAGAAAAACAT 57.081 29.630 4.32 0.00 0.00 2.71
3434 3577 9.135189 AGCATGGCTTGATATTATAGAAAAACA 57.865 29.630 4.32 0.00 33.89 2.83
3435 3578 9.617975 GAGCATGGCTTGATATTATAGAAAAAC 57.382 33.333 4.32 0.00 39.88 2.43
3436 3579 9.353431 TGAGCATGGCTTGATATTATAGAAAAA 57.647 29.630 4.32 0.00 39.88 1.94
3437 3580 8.922931 TGAGCATGGCTTGATATTATAGAAAA 57.077 30.769 4.32 0.00 39.88 2.29
3438 3581 8.953313 CATGAGCATGGCTTGATATTATAGAAA 58.047 33.333 4.32 0.00 39.88 2.52
3439 3582 8.105197 ACATGAGCATGGCTTGATATTATAGAA 58.895 33.333 14.35 0.00 42.91 2.10
3440 3583 7.627311 ACATGAGCATGGCTTGATATTATAGA 58.373 34.615 14.35 0.00 42.91 1.98
3441 3584 7.551617 TGACATGAGCATGGCTTGATATTATAG 59.448 37.037 16.58 0.00 46.89 1.31
3442 3585 7.396418 TGACATGAGCATGGCTTGATATTATA 58.604 34.615 16.58 0.00 46.89 0.98
3443 3586 6.243148 TGACATGAGCATGGCTTGATATTAT 58.757 36.000 16.58 0.00 46.89 1.28
3444 3587 5.623169 TGACATGAGCATGGCTTGATATTA 58.377 37.500 16.58 0.00 46.89 0.98
3445 3588 4.466827 TGACATGAGCATGGCTTGATATT 58.533 39.130 16.58 0.00 46.89 1.28
3446 3589 4.094830 TGACATGAGCATGGCTTGATAT 57.905 40.909 16.58 0.00 46.89 1.63
3447 3590 3.564053 TGACATGAGCATGGCTTGATA 57.436 42.857 16.58 0.00 46.89 2.15
3448 3591 2.430248 TGACATGAGCATGGCTTGAT 57.570 45.000 16.58 0.00 46.89 2.57
3449 3592 2.430248 ATGACATGAGCATGGCTTGA 57.570 45.000 16.58 0.00 46.89 3.02
3450 3593 3.550233 GCTTATGACATGAGCATGGCTTG 60.550 47.826 23.31 6.10 46.89 4.01
3451 3594 2.621998 GCTTATGACATGAGCATGGCTT 59.378 45.455 23.31 12.80 46.89 4.35
3452 3595 2.158652 AGCTTATGACATGAGCATGGCT 60.159 45.455 28.02 18.73 46.89 4.75
3453 3596 2.228059 AGCTTATGACATGAGCATGGC 58.772 47.619 28.02 12.01 46.95 4.40
3454 3597 4.639334 ACTAGCTTATGACATGAGCATGG 58.361 43.478 28.02 19.96 43.63 3.66
3455 3598 7.095313 CCTTTACTAGCTTATGACATGAGCATG 60.095 40.741 28.02 21.97 43.63 4.06
3456 3599 6.933521 CCTTTACTAGCTTATGACATGAGCAT 59.066 38.462 28.02 17.63 43.63 3.79
3457 3600 6.098266 TCCTTTACTAGCTTATGACATGAGCA 59.902 38.462 28.02 15.92 43.63 4.26
3458 3601 6.516718 TCCTTTACTAGCTTATGACATGAGC 58.483 40.000 21.36 21.36 41.73 4.26
3459 3602 8.200792 AGTTCCTTTACTAGCTTATGACATGAG 58.799 37.037 0.00 2.88 0.00 2.90
3460 3603 8.079211 AGTTCCTTTACTAGCTTATGACATGA 57.921 34.615 0.00 0.00 0.00 3.07
3461 3604 8.607459 CAAGTTCCTTTACTAGCTTATGACATG 58.393 37.037 0.00 0.00 0.00 3.21
3462 3605 7.281100 GCAAGTTCCTTTACTAGCTTATGACAT 59.719 37.037 0.00 0.00 0.00 3.06
3463 3606 6.594159 GCAAGTTCCTTTACTAGCTTATGACA 59.406 38.462 0.00 0.00 0.00 3.58
3464 3607 6.594159 TGCAAGTTCCTTTACTAGCTTATGAC 59.406 38.462 0.00 0.00 0.00 3.06
3465 3608 6.594159 GTGCAAGTTCCTTTACTAGCTTATGA 59.406 38.462 0.00 0.00 0.00 2.15
3466 3609 6.371548 TGTGCAAGTTCCTTTACTAGCTTATG 59.628 38.462 0.00 0.00 0.00 1.90
3467 3610 6.371825 GTGTGCAAGTTCCTTTACTAGCTTAT 59.628 38.462 0.00 0.00 0.00 1.73
3468 3611 5.699458 GTGTGCAAGTTCCTTTACTAGCTTA 59.301 40.000 0.00 0.00 0.00 3.09
3469 3612 4.515567 GTGTGCAAGTTCCTTTACTAGCTT 59.484 41.667 0.00 0.00 0.00 3.74
3470 3613 4.065789 GTGTGCAAGTTCCTTTACTAGCT 58.934 43.478 0.00 0.00 0.00 3.32
3471 3614 3.813166 TGTGTGCAAGTTCCTTTACTAGC 59.187 43.478 0.00 0.00 0.00 3.42
3472 3615 5.558273 CGTTGTGTGCAAGTTCCTTTACTAG 60.558 44.000 0.00 0.00 34.94 2.57
3498 3641 7.038154 TCCAGAAACACACATCCTTTAAAAG 57.962 36.000 0.00 0.00 0.00 2.27
3501 3644 5.690865 ACTCCAGAAACACACATCCTTTAA 58.309 37.500 0.00 0.00 0.00 1.52
3536 3679 7.061094 GCACATAAACTCAAGTATTCAAACTGC 59.939 37.037 0.00 0.00 0.00 4.40
3561 3717 3.368571 GCACCAGGAGCACCTTGC 61.369 66.667 10.54 10.54 45.36 4.01
3565 3721 1.748122 CATCTGCACCAGGAGCACC 60.748 63.158 7.60 0.00 37.02 5.01
3599 3755 0.592637 CAAATTCTGTCAGCGTGGCA 59.407 50.000 0.00 0.00 0.00 4.92
3605 3761 2.095364 CACCTGCTCAAATTCTGTCAGC 60.095 50.000 0.00 0.00 0.00 4.26
3608 3764 2.626088 GCACCTGCTCAAATTCTGTC 57.374 50.000 0.00 0.00 38.21 3.51
3662 3818 3.689649 ACAAATCAAATACACGAGGAGCC 59.310 43.478 0.00 0.00 0.00 4.70
3701 3857 1.676968 CCTCATGTCCACGGTTCCA 59.323 57.895 0.00 0.00 0.00 3.53
3795 3951 1.581934 CAGAGTCGCACTGTTTTGGA 58.418 50.000 0.00 0.00 0.00 3.53
3814 3970 2.550830 TCACAAGAACCTTCTCCAGC 57.449 50.000 0.00 0.00 36.28 4.85
3860 4089 0.736636 TCGGCGTCGTACATCTGAAT 59.263 50.000 10.18 0.00 37.69 2.57
3944 4180 3.570975 TGGTACAGTACAGGTAGTGTGTG 59.429 47.826 23.52 0.34 46.06 3.82
3977 4213 4.100529 CAGCAACTTTGTGTTCAGAACAG 58.899 43.478 16.68 7.42 43.10 3.16
4114 4353 1.741401 CATCGCCGCCTTGAACTCA 60.741 57.895 0.00 0.00 0.00 3.41
4156 4395 1.674651 CAGGGACGAGAGGACGACA 60.675 63.158 0.00 0.00 37.03 4.35
4180 4419 0.036875 AACAAGTCTACTGCTGCCCC 59.963 55.000 0.00 0.00 0.00 5.80
4197 4436 9.314501 GTTCAACTAGTACAAATTCGAATGAAC 57.685 33.333 12.25 13.18 36.81 3.18
4199 4438 7.383029 ACGTTCAACTAGTACAAATTCGAATGA 59.617 33.333 12.25 0.00 0.00 2.57
4253 4498 0.107831 TTTACAGCAGCCGGTGAACT 59.892 50.000 6.05 0.00 43.56 3.01
4254 4499 0.948678 TTTTACAGCAGCCGGTGAAC 59.051 50.000 6.05 0.00 43.56 3.18
4256 4502 1.164411 CATTTTACAGCAGCCGGTGA 58.836 50.000 6.05 0.00 43.56 4.02
4300 4548 1.003223 AGTTTAAGCACAAACGGCGTC 60.003 47.619 15.17 0.00 42.12 5.19
4301 4549 1.003223 GAGTTTAAGCACAAACGGCGT 60.003 47.619 6.77 6.77 42.12 5.68
4313 4561 9.651718 GAAATAAATATCGTGCAGGAGTTTAAG 57.348 33.333 22.54 0.00 0.00 1.85
4413 4670 4.033009 TCCTGAAGATAAGGCATGAGACA 58.967 43.478 0.00 0.00 34.56 3.41
4419 4676 3.390639 CACCTCTCCTGAAGATAAGGCAT 59.609 47.826 0.00 0.00 34.56 4.40
4421 4678 2.769095 ACACCTCTCCTGAAGATAAGGC 59.231 50.000 0.00 0.00 34.56 4.35
4488 4768 0.615331 GGGAGAGAGACATTGGTGCA 59.385 55.000 0.00 0.00 0.00 4.57
4497 4777 2.543037 AAAGGGAGAGGGAGAGAGAC 57.457 55.000 0.00 0.00 0.00 3.36
4498 4778 4.202792 TGTTAAAAGGGAGAGGGAGAGAGA 60.203 45.833 0.00 0.00 0.00 3.10
4499 4779 4.097418 TGTTAAAAGGGAGAGGGAGAGAG 58.903 47.826 0.00 0.00 0.00 3.20
4500 4780 4.141990 TGTTAAAAGGGAGAGGGAGAGA 57.858 45.455 0.00 0.00 0.00 3.10
4501 4781 5.663556 ACTATGTTAAAAGGGAGAGGGAGAG 59.336 44.000 0.00 0.00 0.00 3.20
4506 4787 6.931840 GCTGATACTATGTTAAAAGGGAGAGG 59.068 42.308 0.00 0.00 0.00 3.69
4516 4797 6.964807 TCGGTTAGGCTGATACTATGTTAA 57.035 37.500 0.00 0.00 0.00 2.01
4523 4804 5.116882 GTTTGAATCGGTTAGGCTGATACT 58.883 41.667 0.00 0.00 42.11 2.12
4541 4826 1.889829 CGGCCAACAATTAGGGTTTGA 59.110 47.619 2.24 0.00 0.00 2.69
4551 4837 0.249826 CAAAAGTGGCGGCCAACAAT 60.250 50.000 25.70 8.08 34.18 2.71
4552 4838 1.142748 CAAAAGTGGCGGCCAACAA 59.857 52.632 25.70 0.00 34.18 2.83
4652 4942 2.401766 GGCAGCCGGTCAACATGAG 61.402 63.158 1.90 0.00 0.00 2.90
4701 4992 1.677552 GCGGGAGAGAGAAAACCCA 59.322 57.895 0.00 0.00 42.16 4.51
4806 5106 1.103803 GATGGAGTAGAGGTGCGTGA 58.896 55.000 0.00 0.00 0.00 4.35
4807 5107 0.817654 TGATGGAGTAGAGGTGCGTG 59.182 55.000 0.00 0.00 0.00 5.34
4808 5108 0.818296 GTGATGGAGTAGAGGTGCGT 59.182 55.000 0.00 0.00 0.00 5.24
4812 5112 1.765230 GTCGGTGATGGAGTAGAGGT 58.235 55.000 0.00 0.00 0.00 3.85
4840 5140 2.174319 GGGTCGATGAAGAAGCCGC 61.174 63.158 0.00 0.00 0.00 6.53
5081 5387 1.404181 CGAAGTCCGAGATGAAGCCAA 60.404 52.381 0.00 0.00 41.76 4.52
5082 5388 0.173481 CGAAGTCCGAGATGAAGCCA 59.827 55.000 0.00 0.00 41.76 4.75
5164 5471 4.170062 GACGGATCGTGACGGCGA 62.170 66.667 16.62 1.86 41.37 5.54
5170 5477 2.226674 GCATAGATGAGACGGATCGTGA 59.773 50.000 0.00 0.00 41.37 4.35
5172 5479 1.542030 GGCATAGATGAGACGGATCGT 59.458 52.381 0.00 0.00 45.10 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.