Multiple sequence alignment - TraesCS1B01G317300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G317300 chr1B 100.000 4323 0 0 1 4323 542426576 542430898 0.000000e+00 7984.0
1 TraesCS1B01G317300 chr1B 80.678 678 85 26 2123 2775 542576577 542577233 6.500000e-133 484.0
2 TraesCS1B01G317300 chr1B 83.547 468 55 16 2260 2725 542140637 542140190 6.690000e-113 418.0
3 TraesCS1B01G317300 chr1B 100.000 81 0 0 3074 3154 542429570 542429650 2.690000e-32 150.0
4 TraesCS1B01G317300 chr1B 100.000 81 0 0 2995 3075 542429649 542429729 2.690000e-32 150.0
5 TraesCS1B01G317300 chr1B 92.308 39 3 0 1922 1960 343080347 343080309 6.040000e-04 56.5
6 TraesCS1B01G317300 chr1A 93.109 1248 59 11 3074 4298 498594676 498595919 0.000000e+00 1803.0
7 TraesCS1B01G317300 chr1A 93.601 1047 49 12 2042 3073 498593711 498594754 0.000000e+00 1546.0
8 TraesCS1B01G317300 chr1A 90.331 755 44 12 992 1727 498592940 498593684 0.000000e+00 963.0
9 TraesCS1B01G317300 chr1A 85.714 791 101 11 2 785 309396458 309395673 0.000000e+00 824.0
10 TraesCS1B01G317300 chr1A 83.369 469 54 15 2260 2725 498540063 498539616 3.110000e-111 412.0
11 TraesCS1B01G317300 chr1A 92.233 206 14 2 1725 1929 113874141 113873937 1.520000e-74 291.0
12 TraesCS1B01G317300 chr1A 83.562 292 25 9 1725 2015 221818421 221818690 7.180000e-63 252.0
13 TraesCS1B01G317300 chr1A 88.189 127 2 2 856 969 498592759 498592885 5.830000e-29 139.0
14 TraesCS1B01G317300 chr1A 100.000 33 0 0 2010 2042 498593690 498593722 1.300000e-05 62.1
15 TraesCS1B01G317300 chr1D 92.122 1079 51 9 3074 4120 403333803 403334879 0.000000e+00 1491.0
16 TraesCS1B01G317300 chr1D 94.633 708 23 7 1026 1724 403332159 403332860 0.000000e+00 1083.0
17 TraesCS1B01G317300 chr1D 95.645 574 10 7 2009 2579 403332862 403333423 0.000000e+00 907.0
18 TraesCS1B01G317300 chr1D 84.615 819 109 15 1 810 250734190 250735000 0.000000e+00 798.0
19 TraesCS1B01G317300 chr1D 92.632 475 16 8 2612 3075 403333420 403333886 0.000000e+00 665.0
20 TraesCS1B01G317300 chr1D 87.052 363 39 6 2358 2718 403282457 403282101 1.870000e-108 403.0
21 TraesCS1B01G317300 chr1D 92.718 206 14 1 1725 1929 458202353 458202558 3.270000e-76 296.0
22 TraesCS1B01G317300 chr1D 84.615 130 4 4 855 969 403331926 403332054 9.820000e-22 115.0
23 TraesCS1B01G317300 chr1D 97.674 43 0 1 992 1033 403332109 403332151 6.000000e-09 73.1
24 TraesCS1B01G317300 chr7D 84.487 838 113 16 5 835 190088475 190087648 0.000000e+00 811.0
25 TraesCS1B01G317300 chr7D 83.373 848 117 22 1 836 585427671 585426836 0.000000e+00 763.0
26 TraesCS1B01G317300 chr7D 95.122 41 2 0 1922 1962 491858693 491858653 1.000000e-06 65.8
27 TraesCS1B01G317300 chr3B 84.260 845 115 17 1 836 241669816 241670651 0.000000e+00 808.0
28 TraesCS1B01G317300 chr3B 83.882 850 111 24 2 837 404416294 404417131 0.000000e+00 787.0
29 TraesCS1B01G317300 chr3B 88.421 285 13 8 1725 2009 243240765 243240501 4.170000e-85 326.0
30 TraesCS1B01G317300 chr2D 84.005 844 113 18 1 833 177453779 177452947 0.000000e+00 791.0
31 TraesCS1B01G317300 chr2D 84.775 289 23 10 1724 2012 588717785 588718052 1.980000e-68 270.0
32 TraesCS1B01G317300 chr3D 83.432 845 123 16 1 835 185238305 185237468 0.000000e+00 769.0
33 TraesCS1B01G317300 chr3D 88.339 283 12 5 1724 2006 603709018 603709279 1.940000e-83 320.0
34 TraesCS1B01G317300 chr5A 83.433 839 117 20 1 828 494283403 494284230 0.000000e+00 760.0
35 TraesCS1B01G317300 chr5A 92.788 208 14 1 1724 1931 31444001 31444207 2.530000e-77 300.0
36 TraesCS1B01G317300 chr5A 93.651 63 4 0 1955 2017 703193383 703193445 1.280000e-15 95.3
37 TraesCS1B01G317300 chr2A 86.713 286 17 7 1725 2010 575349020 575349284 9.090000e-77 298.0
38 TraesCS1B01G317300 chr6D 86.667 285 17 5 1725 2009 94757181 94757444 3.270000e-76 296.0
39 TraesCS1B01G317300 chr6D 95.122 41 2 0 1922 1962 330159602 330159562 1.000000e-06 65.8
40 TraesCS1B01G317300 chr6D 95.122 41 2 0 1922 1962 438445152 438445192 1.000000e-06 65.8
41 TraesCS1B01G317300 chr5D 92.417 211 11 3 1724 1929 490027390 490027600 3.270000e-76 296.0
42 TraesCS1B01G317300 chr5D 85.034 294 21 15 1725 2017 366062780 366063051 1.180000e-70 278.0
43 TraesCS1B01G317300 chr2B 92.271 207 15 1 1724 1929 659023632 659023426 4.230000e-75 292.0
44 TraesCS1B01G317300 chr2B 95.122 41 2 0 1922 1962 694612850 694612890 1.000000e-06 65.8
45 TraesCS1B01G317300 chr5B 85.764 288 20 11 1724 2011 35776436 35776702 7.080000e-73 285.0
46 TraesCS1B01G317300 chr5B 84.775 289 21 12 1725 2011 338112401 338112134 7.130000e-68 268.0
47 TraesCS1B01G317300 chr3A 91.038 212 18 1 1725 1935 738251852 738252063 7.080000e-73 285.0
48 TraesCS1B01G317300 chrUn 85.614 285 20 11 1725 2009 310933140 310932877 3.290000e-71 279.0
49 TraesCS1B01G317300 chr4D 84.211 285 24 7 1725 2009 309297459 309297196 1.540000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G317300 chr1B 542426576 542430898 4322 False 2761.333333 7984 100.000000 1 4323 3 chr1B.!!$F2 4322
1 TraesCS1B01G317300 chr1B 542576577 542577233 656 False 484.000000 484 80.678000 2123 2775 1 chr1B.!!$F1 652
2 TraesCS1B01G317300 chr1A 498592759 498595919 3160 False 902.620000 1803 93.046000 856 4298 5 chr1A.!!$F2 3442
3 TraesCS1B01G317300 chr1A 309395673 309396458 785 True 824.000000 824 85.714000 2 785 1 chr1A.!!$R2 783
4 TraesCS1B01G317300 chr1D 250734190 250735000 810 False 798.000000 798 84.615000 1 810 1 chr1D.!!$F1 809
5 TraesCS1B01G317300 chr1D 403331926 403334879 2953 False 722.350000 1491 92.886833 855 4120 6 chr1D.!!$F3 3265
6 TraesCS1B01G317300 chr7D 190087648 190088475 827 True 811.000000 811 84.487000 5 835 1 chr7D.!!$R1 830
7 TraesCS1B01G317300 chr7D 585426836 585427671 835 True 763.000000 763 83.373000 1 836 1 chr7D.!!$R3 835
8 TraesCS1B01G317300 chr3B 241669816 241670651 835 False 808.000000 808 84.260000 1 836 1 chr3B.!!$F1 835
9 TraesCS1B01G317300 chr3B 404416294 404417131 837 False 787.000000 787 83.882000 2 837 1 chr3B.!!$F2 835
10 TraesCS1B01G317300 chr2D 177452947 177453779 832 True 791.000000 791 84.005000 1 833 1 chr2D.!!$R1 832
11 TraesCS1B01G317300 chr3D 185237468 185238305 837 True 769.000000 769 83.432000 1 835 1 chr3D.!!$R1 834
12 TraesCS1B01G317300 chr5A 494283403 494284230 827 False 760.000000 760 83.433000 1 828 1 chr5A.!!$F2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 879 0.040646 TACACATGGACGGAGGGAGT 59.959 55.0 0.00 0.00 0.00 3.85 F
855 880 0.040646 ACACATGGACGGAGGGAGTA 59.959 55.0 0.00 0.00 0.00 2.59 F
857 882 0.335361 ACATGGACGGAGGGAGTACT 59.665 55.0 0.00 0.00 0.00 2.73 F
859 884 0.629596 ATGGACGGAGGGAGTACTCA 59.370 55.0 23.91 1.36 39.27 3.41 F
2045 2149 0.381445 TAATCATGCCACGCACATGC 59.619 50.0 7.76 0.00 43.04 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2101 0.178970 ACACAGTGTACTCCCTCCGT 60.179 55.000 3.69 0.0 0.00 4.69 R
1998 2102 0.526662 GACACAGTGTACTCCCTCCG 59.473 60.000 6.06 0.0 0.00 4.63 R
2045 2149 1.062002 AGTTCAGTTTTGCGTGTGTCG 59.938 47.619 0.00 0.0 43.12 4.35 R
2767 2907 1.181786 TCCCGCAAAAAGGCCATAAG 58.818 50.000 5.01 0.0 0.00 1.73 R
3397 3548 0.740737 GCATTGCACCCCTCATACAC 59.259 55.000 3.15 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 94 1.610522 GTCATCACCTTGCTTGCAACT 59.389 47.619 3.70 0.00 0.00 3.16
123 126 5.048224 ACATGATGAGCAAAAAGGACTCAAG 60.048 40.000 0.00 0.00 43.23 3.02
124 127 3.822735 TGATGAGCAAAAAGGACTCAAGG 59.177 43.478 0.00 0.00 43.23 3.61
140 143 2.610859 GGGGGAGGAGAAGCACCA 60.611 66.667 0.00 0.00 0.00 4.17
142 145 1.613630 GGGGAGGAGAAGCACCAGA 60.614 63.158 0.00 0.00 0.00 3.86
189 193 4.627255 GCCTTCATGAAGATCCAAAGGAGA 60.627 45.833 32.49 0.00 40.79 3.71
243 247 0.324614 TGCTTGAGATGGAGGCGAAA 59.675 50.000 0.00 0.00 0.00 3.46
245 249 1.399791 GCTTGAGATGGAGGCGAAAAG 59.600 52.381 0.00 0.00 0.00 2.27
293 297 1.679944 CGTCAATGCCAGGATCAAGGT 60.680 52.381 0.00 0.00 0.00 3.50
312 316 3.354499 GAAAGAAGTGGCGCTCGCG 62.354 63.158 7.64 6.98 43.06 5.87
435 439 0.680280 ACGACGAGTGACCTATGGCT 60.680 55.000 0.00 0.00 0.00 4.75
437 441 0.103208 GACGAGTGACCTATGGCTGG 59.897 60.000 0.00 0.00 0.00 4.85
449 454 3.785859 GGCTGGGAGCGTCATCCA 61.786 66.667 5.93 0.00 43.62 3.41
522 529 1.583495 CGAACTCCCGCCCCTTTTTC 61.583 60.000 0.00 0.00 0.00 2.29
532 539 0.829182 CCCCTTTTTCTGTGCTGGCT 60.829 55.000 0.00 0.00 0.00 4.75
639 651 2.785258 GACATGAACTTCGGGCGC 59.215 61.111 0.00 0.00 0.00 6.53
674 687 1.001293 GACATGATCTATGGCCGCAGA 59.999 52.381 8.44 8.44 39.01 4.26
680 694 0.178068 TCTATGGCCGCAGACCTTTC 59.822 55.000 0.00 0.00 0.00 2.62
710 730 5.155278 TGTGTGGACATAAAATAGGTCGT 57.845 39.130 0.00 0.00 40.16 4.34
775 798 0.856641 CGAACGAAGGCGACTCAAAA 59.143 50.000 0.00 0.00 42.68 2.44
781 804 2.132762 GAAGGCGACTCAAAAGAACGA 58.867 47.619 0.00 0.00 42.68 3.85
817 841 2.499693 TCGACATCCATTTGAGTAGGCA 59.500 45.455 0.00 0.00 0.00 4.75
837 862 4.435651 GGCACGTTGAAGTTGCTCTTATAC 60.436 45.833 0.00 0.00 36.40 1.47
838 863 4.151689 GCACGTTGAAGTTGCTCTTATACA 59.848 41.667 0.00 0.00 36.40 2.29
839 864 5.609088 CACGTTGAAGTTGCTCTTATACAC 58.391 41.667 0.00 0.00 36.40 2.90
840 865 5.176774 CACGTTGAAGTTGCTCTTATACACA 59.823 40.000 0.00 0.00 36.40 3.72
841 866 5.932303 ACGTTGAAGTTGCTCTTATACACAT 59.068 36.000 0.00 0.00 36.40 3.21
842 867 6.128553 ACGTTGAAGTTGCTCTTATACACATG 60.129 38.462 0.00 0.00 36.40 3.21
843 868 6.546395 GTTGAAGTTGCTCTTATACACATGG 58.454 40.000 0.00 0.00 36.40 3.66
844 869 6.048732 TGAAGTTGCTCTTATACACATGGA 57.951 37.500 0.00 0.00 36.40 3.41
845 870 5.874810 TGAAGTTGCTCTTATACACATGGAC 59.125 40.000 0.00 0.00 36.40 4.02
846 871 4.433615 AGTTGCTCTTATACACATGGACG 58.566 43.478 0.00 0.00 0.00 4.79
847 872 3.452755 TGCTCTTATACACATGGACGG 57.547 47.619 0.00 0.00 0.00 4.79
848 873 3.028130 TGCTCTTATACACATGGACGGA 58.972 45.455 0.00 0.00 0.00 4.69
849 874 3.068165 TGCTCTTATACACATGGACGGAG 59.932 47.826 0.00 0.00 0.00 4.63
850 875 3.553096 GCTCTTATACACATGGACGGAGG 60.553 52.174 0.00 0.00 0.00 4.30
851 876 2.963101 TCTTATACACATGGACGGAGGG 59.037 50.000 0.00 0.00 0.00 4.30
852 877 2.759839 TATACACATGGACGGAGGGA 57.240 50.000 0.00 0.00 0.00 4.20
853 878 1.414158 ATACACATGGACGGAGGGAG 58.586 55.000 0.00 0.00 0.00 4.30
854 879 0.040646 TACACATGGACGGAGGGAGT 59.959 55.000 0.00 0.00 0.00 3.85
855 880 0.040646 ACACATGGACGGAGGGAGTA 59.959 55.000 0.00 0.00 0.00 2.59
856 881 0.460311 CACATGGACGGAGGGAGTAC 59.540 60.000 0.00 0.00 0.00 2.73
857 882 0.335361 ACATGGACGGAGGGAGTACT 59.665 55.000 0.00 0.00 0.00 2.73
858 883 1.033574 CATGGACGGAGGGAGTACTC 58.966 60.000 14.87 14.87 36.76 2.59
859 884 0.629596 ATGGACGGAGGGAGTACTCA 59.370 55.000 23.91 1.36 39.27 3.41
875 900 7.448469 GGGAGTACTCATTTACATTTATGCCAT 59.552 37.037 23.91 0.00 0.00 4.40
969 1006 5.838531 ACTGTAATACTCCTGCTCAGTAC 57.161 43.478 0.00 0.00 33.78 2.73
970 1007 5.511363 ACTGTAATACTCCTGCTCAGTACT 58.489 41.667 0.00 0.00 33.78 2.73
971 1008 5.591067 ACTGTAATACTCCTGCTCAGTACTC 59.409 44.000 0.00 0.00 33.78 2.59
972 1009 4.575236 TGTAATACTCCTGCTCAGTACTCG 59.425 45.833 0.00 0.00 0.00 4.18
973 1010 1.380524 TACTCCTGCTCAGTACTCGC 58.619 55.000 6.71 6.71 0.00 5.03
974 1011 1.316706 ACTCCTGCTCAGTACTCGCC 61.317 60.000 10.32 0.00 0.00 5.54
975 1012 1.000771 TCCTGCTCAGTACTCGCCT 60.001 57.895 10.32 0.00 0.00 5.52
976 1013 1.140589 CCTGCTCAGTACTCGCCTG 59.859 63.158 10.32 4.71 0.00 4.85
977 1014 1.518133 CTGCTCAGTACTCGCCTGC 60.518 63.158 10.32 3.90 0.00 4.85
978 1015 2.202810 GCTCAGTACTCGCCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
979 1016 2.496817 CTCAGTACTCGCCTGCCC 59.503 66.667 0.00 0.00 0.00 5.36
983 1020 4.452733 GTACTCGCCTGCCCGCTT 62.453 66.667 0.00 0.00 0.00 4.68
984 1021 3.702048 TACTCGCCTGCCCGCTTT 61.702 61.111 0.00 0.00 0.00 3.51
985 1022 3.659089 TACTCGCCTGCCCGCTTTC 62.659 63.158 0.00 0.00 0.00 2.62
1211 1296 1.891150 GAAGTACCAGAAGTCCACCGA 59.109 52.381 0.00 0.00 0.00 4.69
1334 1420 1.143838 CACCGATTCAGGATGCGGA 59.856 57.895 14.59 0.00 46.29 5.54
1441 1535 3.071206 GGACTCCTCAGGCGCTCA 61.071 66.667 7.64 0.00 0.00 4.26
1463 1557 2.372690 CGTTGCAAGAGGTCGGTCG 61.373 63.158 0.00 0.00 0.00 4.79
1550 1644 3.868077 ACTGCGATAGTTCTGAGAATTGC 59.132 43.478 0.00 0.00 35.67 3.56
1602 1696 4.840716 AGTTCCTGAATCTGAATGCTCT 57.159 40.909 0.00 0.00 0.00 4.09
1727 1831 8.289939 TCTCGTTGTTTGGTCTAAGATATACT 57.710 34.615 0.00 0.00 0.00 2.12
1730 1834 8.404000 TCGTTGTTTGGTCTAAGATATACTCTC 58.596 37.037 0.00 0.00 31.03 3.20
1732 1836 9.738832 GTTGTTTGGTCTAAGATATACTCTCTC 57.261 37.037 0.00 0.00 31.03 3.20
1733 1837 8.466617 TGTTTGGTCTAAGATATACTCTCTCC 57.533 38.462 0.00 0.00 31.03 3.71
1734 1838 7.228906 TGTTTGGTCTAAGATATACTCTCTCCG 59.771 40.741 0.00 0.00 31.03 4.63
1735 1839 6.436738 TGGTCTAAGATATACTCTCTCCGT 57.563 41.667 0.00 0.00 31.03 4.69
1736 1840 6.465948 TGGTCTAAGATATACTCTCTCCGTC 58.534 44.000 0.00 0.00 31.03 4.79
1737 1841 5.876460 GGTCTAAGATATACTCTCTCCGTCC 59.124 48.000 0.00 0.00 31.03 4.79
1738 1842 6.296030 GGTCTAAGATATACTCTCTCCGTCCT 60.296 46.154 0.00 0.00 31.03 3.85
1739 1843 7.163441 GTCTAAGATATACTCTCTCCGTCCTT 58.837 42.308 0.00 0.00 31.03 3.36
1740 1844 7.332678 GTCTAAGATATACTCTCTCCGTCCTTC 59.667 44.444 0.00 0.00 31.03 3.46
1741 1845 5.570205 AGATATACTCTCTCCGTCCTTCA 57.430 43.478 0.00 0.00 0.00 3.02
1742 1846 5.942961 AGATATACTCTCTCCGTCCTTCAA 58.057 41.667 0.00 0.00 0.00 2.69
1743 1847 6.366340 AGATATACTCTCTCCGTCCTTCAAA 58.634 40.000 0.00 0.00 0.00 2.69
1744 1848 4.993029 ATACTCTCTCCGTCCTTCAAAG 57.007 45.455 0.00 0.00 0.00 2.77
1745 1849 2.877866 ACTCTCTCCGTCCTTCAAAGA 58.122 47.619 0.00 0.00 0.00 2.52
1746 1850 2.823154 ACTCTCTCCGTCCTTCAAAGAG 59.177 50.000 0.00 0.00 35.80 2.85
1747 1851 2.823154 CTCTCTCCGTCCTTCAAAGAGT 59.177 50.000 0.00 0.00 35.91 3.24
1748 1852 2.558795 TCTCTCCGTCCTTCAAAGAGTG 59.441 50.000 0.00 0.00 35.91 3.51
1749 1853 2.297597 CTCTCCGTCCTTCAAAGAGTGT 59.702 50.000 0.00 0.00 31.02 3.55
1750 1854 3.493334 TCTCCGTCCTTCAAAGAGTGTA 58.507 45.455 0.00 0.00 0.00 2.90
1751 1855 3.255149 TCTCCGTCCTTCAAAGAGTGTAC 59.745 47.826 0.00 0.00 0.00 2.90
1752 1856 3.228453 TCCGTCCTTCAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
1753 1857 3.640029 TCCGTCCTTCAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
1754 1858 3.988517 CCGTCCTTCAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
1755 1859 3.988517 CGTCCTTCAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
1756 1860 4.500887 CGTCCTTCAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
1757 1861 5.365619 GTCCTTCAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
1758 1862 5.236695 GTCCTTCAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
1759 1863 5.130477 TCCTTCAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
1760 1864 5.823045 CCTTCAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
1761 1865 6.318900 CCTTCAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
1762 1866 6.677781 TCAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 39.53 2.77
1763 1867 6.177610 TCAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 16.23 0.00 39.38 2.83
1764 1868 6.657541 TCAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 16.23 0.00 39.38 2.83
1765 1869 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
1766 1870 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
1767 1871 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
1773 1877 3.924114 TCCAACTTTGTTGGAGAGTCA 57.076 42.857 23.38 5.39 43.17 3.41
1774 1878 4.229304 TCCAACTTTGTTGGAGAGTCAA 57.771 40.909 23.38 4.76 43.17 3.18
1775 1879 4.594970 TCCAACTTTGTTGGAGAGTCAAA 58.405 39.130 23.38 4.13 43.17 2.69
1776 1880 4.398044 TCCAACTTTGTTGGAGAGTCAAAC 59.602 41.667 23.38 0.00 43.17 2.93
1777 1881 4.399303 CCAACTTTGTTGGAGAGTCAAACT 59.601 41.667 21.06 0.00 42.06 2.66
1778 1882 5.588648 CCAACTTTGTTGGAGAGTCAAACTA 59.411 40.000 21.06 0.00 42.06 2.24
1779 1883 6.263168 CCAACTTTGTTGGAGAGTCAAACTAT 59.737 38.462 21.06 0.00 42.06 2.12
1780 1884 7.355778 CAACTTTGTTGGAGAGTCAAACTATC 58.644 38.462 2.79 0.00 35.81 2.08
1781 1885 6.831976 ACTTTGTTGGAGAGTCAAACTATCT 58.168 36.000 2.18 0.00 36.72 1.98
1782 1886 6.931840 ACTTTGTTGGAGAGTCAAACTATCTC 59.068 38.462 2.18 0.00 36.72 2.75
1783 1887 6.419484 TTGTTGGAGAGTCAAACTATCTCA 57.581 37.500 4.05 0.00 41.03 3.27
1784 1888 6.419484 TGTTGGAGAGTCAAACTATCTCAA 57.581 37.500 4.05 2.79 41.03 3.02
1785 1889 6.826668 TGTTGGAGAGTCAAACTATCTCAAA 58.173 36.000 4.05 0.00 41.03 2.69
1786 1890 6.931281 TGTTGGAGAGTCAAACTATCTCAAAG 59.069 38.462 4.05 0.00 41.03 2.77
1787 1891 6.672266 TGGAGAGTCAAACTATCTCAAAGT 57.328 37.500 4.05 0.00 41.03 2.66
1788 1892 7.067496 TGGAGAGTCAAACTATCTCAAAGTT 57.933 36.000 4.05 0.00 41.03 2.66
1789 1893 7.509546 TGGAGAGTCAAACTATCTCAAAGTTT 58.490 34.615 4.05 0.00 45.64 2.66
1796 1900 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
1797 1901 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
1798 1902 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
1799 1903 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
1800 1904 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
1801 1905 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
1802 1906 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
1803 1907 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
1804 1908 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
1805 1909 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
1806 1910 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
1807 1911 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
1808 1912 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
1809 1913 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
1810 1914 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
1811 1915 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
1812 1916 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
1813 1917 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
1814 1918 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
1815 1919 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
1816 1920 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
1817 1921 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
1818 1922 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
1819 1923 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
1825 1929 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
1836 1940 9.874205 ATATCAATGTTTGTGAAACCAAATAGG 57.126 29.630 0.00 0.00 40.67 2.57
1837 1941 7.353414 TCAATGTTTGTGAAACCAAATAGGA 57.647 32.000 0.00 0.00 40.67 2.94
1838 1942 7.432869 TCAATGTTTGTGAAACCAAATAGGAG 58.567 34.615 0.00 0.00 40.67 3.69
1839 1943 6.976934 ATGTTTGTGAAACCAAATAGGAGT 57.023 33.333 0.00 0.00 40.67 3.85
1840 1944 8.356657 CAATGTTTGTGAAACCAAATAGGAGTA 58.643 33.333 0.00 0.00 40.67 2.59
1841 1945 8.650143 ATGTTTGTGAAACCAAATAGGAGTAT 57.350 30.769 0.00 0.00 40.67 2.12
1842 1946 7.881142 TGTTTGTGAAACCAAATAGGAGTATG 58.119 34.615 0.00 0.00 40.67 2.39
1843 1947 7.040062 TGTTTGTGAAACCAAATAGGAGTATGG 60.040 37.037 0.00 0.00 40.67 2.74
1845 1949 5.943416 TGTGAAACCAAATAGGAGTATGGTG 59.057 40.000 0.00 0.00 45.15 4.17
1846 1950 6.177610 GTGAAACCAAATAGGAGTATGGTGA 58.822 40.000 0.00 0.00 45.15 4.02
1847 1951 6.657541 GTGAAACCAAATAGGAGTATGGTGAA 59.342 38.462 0.00 0.00 45.15 3.18
1848 1952 7.175990 GTGAAACCAAATAGGAGTATGGTGAAA 59.824 37.037 0.00 0.00 45.15 2.69
1849 1953 7.726291 TGAAACCAAATAGGAGTATGGTGAAAA 59.274 33.333 0.00 0.00 45.15 2.29
1850 1954 8.664669 AAACCAAATAGGAGTATGGTGAAAAT 57.335 30.769 0.00 0.00 45.15 1.82
1851 1955 9.762381 AAACCAAATAGGAGTATGGTGAAAATA 57.238 29.630 0.00 0.00 45.15 1.40
1852 1956 9.936329 AACCAAATAGGAGTATGGTGAAAATAT 57.064 29.630 0.00 0.00 45.15 1.28
1899 2003 9.507280 CTACTAATTTGACAGCATAAATGTTGG 57.493 33.333 10.90 0.00 42.38 3.77
1900 2004 7.895759 ACTAATTTGACAGCATAAATGTTGGT 58.104 30.769 10.90 0.00 42.38 3.67
1901 2005 7.814107 ACTAATTTGACAGCATAAATGTTGGTG 59.186 33.333 10.90 1.67 45.62 4.17
1910 2014 7.761409 CAGCATAAATGTTGGTGTACTATTGT 58.239 34.615 0.00 0.00 37.71 2.71
1911 2015 8.888716 CAGCATAAATGTTGGTGTACTATTGTA 58.111 33.333 0.00 0.00 37.71 2.41
1912 2016 9.627123 AGCATAAATGTTGGTGTACTATTGTAT 57.373 29.630 0.00 0.00 0.00 2.29
1972 2076 9.841295 AATACTACTAGTTTGACTTTCCAACAA 57.159 29.630 0.00 0.00 0.00 2.83
1973 2077 9.841295 ATACTACTAGTTTGACTTTCCAACAAA 57.159 29.630 0.00 0.00 0.00 2.83
1974 2078 8.209917 ACTACTAGTTTGACTTTCCAACAAAG 57.790 34.615 0.00 0.00 34.86 2.77
1975 2079 7.827729 ACTACTAGTTTGACTTTCCAACAAAGT 59.172 33.333 0.00 0.00 42.62 2.66
1976 2080 7.462571 ACTAGTTTGACTTTCCAACAAAGTT 57.537 32.000 0.00 0.00 40.27 2.66
1977 2081 7.312899 ACTAGTTTGACTTTCCAACAAAGTTG 58.687 34.615 0.00 3.00 40.27 3.16
1978 2082 5.478407 AGTTTGACTTTCCAACAAAGTTGG 58.522 37.500 20.09 20.09 40.27 3.77
1979 2083 5.245075 AGTTTGACTTTCCAACAAAGTTGGA 59.755 36.000 23.64 23.64 46.08 3.53
1987 2091 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
1988 2092 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
1989 2093 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
1990 2094 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
1991 2095 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
1992 2096 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
1993 2097 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
1994 2098 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
1995 2099 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
1996 2100 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
1997 2101 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
1998 2102 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
1999 2103 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
2000 2104 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
2001 2105 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
2002 2106 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
2003 2107 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
2004 2108 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2005 2109 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
2006 2110 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
2007 2111 0.977395 CTTTCAAGGACGGAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
2042 2146 1.748950 ACATAATCATGCCACGCACA 58.251 45.000 0.00 0.00 43.04 4.57
2043 2147 2.300433 ACATAATCATGCCACGCACAT 58.700 42.857 0.00 0.00 43.04 3.21
2044 2148 2.033675 ACATAATCATGCCACGCACATG 59.966 45.455 6.57 6.57 43.04 3.21
2045 2149 0.381445 TAATCATGCCACGCACATGC 59.619 50.000 7.76 0.00 43.04 4.06
2067 2171 3.059868 CGACACACGCAAAACTGAACTAT 60.060 43.478 0.00 0.00 34.51 2.12
2274 2408 1.598130 ACAAGTCGCCTCTTGCCAC 60.598 57.895 13.24 0.00 45.86 5.01
2672 2809 9.745880 AAGCTGCAAGAATTCAATGATTATTAG 57.254 29.630 8.44 1.59 34.07 1.73
2767 2907 5.551760 ACAAACAGCAGATATGCTAACAC 57.448 39.130 15.69 0.00 44.30 3.32
2775 2915 4.154918 GCAGATATGCTAACACTTATGGCC 59.845 45.833 4.74 0.00 0.00 5.36
2797 2938 5.616645 GCCTTTTTGCGGGAAAACAATTATG 60.617 40.000 6.93 0.00 33.09 1.90
2809 2957 6.650390 GGAAAACAATTATGGCTTGTGAATGT 59.350 34.615 0.00 0.00 36.95 2.71
2815 2963 2.644887 GGCTTGTGAATGTGCCAGA 58.355 52.632 0.00 0.00 44.34 3.86
2816 2964 0.524862 GGCTTGTGAATGTGCCAGAG 59.475 55.000 0.00 0.00 44.34 3.35
2817 2965 1.242076 GCTTGTGAATGTGCCAGAGT 58.758 50.000 0.00 0.00 0.00 3.24
2818 2966 1.610522 GCTTGTGAATGTGCCAGAGTT 59.389 47.619 0.00 0.00 0.00 3.01
2819 2967 2.035066 GCTTGTGAATGTGCCAGAGTTT 59.965 45.455 0.00 0.00 0.00 2.66
2820 2968 3.491447 GCTTGTGAATGTGCCAGAGTTTT 60.491 43.478 0.00 0.00 0.00 2.43
2821 2969 3.988379 TGTGAATGTGCCAGAGTTTTC 57.012 42.857 0.00 0.00 0.00 2.29
3045 3196 7.214467 TCATCAAGGTTGTTGTTTCTATTCC 57.786 36.000 1.69 0.00 31.53 3.01
3046 3197 6.775142 TCATCAAGGTTGTTGTTTCTATTCCA 59.225 34.615 1.69 0.00 31.53 3.53
3047 3198 7.286546 TCATCAAGGTTGTTGTTTCTATTCCAA 59.713 33.333 1.69 0.00 31.53 3.53
3048 3199 7.595819 TCAAGGTTGTTGTTTCTATTCCAAT 57.404 32.000 0.00 0.00 0.00 3.16
3049 3200 8.698973 TCAAGGTTGTTGTTTCTATTCCAATA 57.301 30.769 0.00 0.00 0.00 1.90
3050 3201 9.137459 TCAAGGTTGTTGTTTCTATTCCAATAA 57.863 29.630 0.00 0.00 0.00 1.40
3051 3202 9.191995 CAAGGTTGTTGTTTCTATTCCAATAAC 57.808 33.333 0.00 0.00 38.61 1.89
3052 3203 8.472007 AGGTTGTTGTTTCTATTCCAATAACA 57.528 30.769 11.48 0.00 40.07 2.41
3053 3204 8.919145 AGGTTGTTGTTTCTATTCCAATAACAA 58.081 29.630 11.48 0.00 40.07 2.83
3054 3205 9.535878 GGTTGTTGTTTCTATTCCAATAACAAA 57.464 29.630 8.07 0.00 42.21 2.83
3075 3226 9.758651 AACAAATAAATGTTTTCAGTTAGGGAC 57.241 29.630 0.00 0.00 42.26 4.46
3076 3227 8.919145 ACAAATAAATGTTTTCAGTTAGGGACA 58.081 29.630 0.00 0.00 42.26 4.02
3077 3228 9.757227 CAAATAAATGTTTTCAGTTAGGGACAA 57.243 29.630 0.00 0.00 42.26 3.18
3082 3233 7.703058 ATGTTTTCAGTTAGGGACAAATAGG 57.297 36.000 0.00 0.00 0.00 2.57
3083 3234 6.607019 TGTTTTCAGTTAGGGACAAATAGGT 58.393 36.000 0.00 0.00 0.00 3.08
3084 3235 6.488683 TGTTTTCAGTTAGGGACAAATAGGTG 59.511 38.462 0.00 0.00 0.00 4.00
3085 3236 5.836024 TTCAGTTAGGGACAAATAGGTGT 57.164 39.130 0.00 0.00 0.00 4.16
3086 3237 5.416271 TCAGTTAGGGACAAATAGGTGTC 57.584 43.478 0.00 0.00 45.99 3.67
3093 3244 5.416271 GGGACAAATAGGTGTCACTAGAA 57.584 43.478 2.35 0.00 46.53 2.10
3094 3245 5.990668 GGGACAAATAGGTGTCACTAGAAT 58.009 41.667 2.35 0.00 46.53 2.40
3095 3246 6.415573 GGGACAAATAGGTGTCACTAGAATT 58.584 40.000 2.35 0.00 46.53 2.17
3096 3247 7.562135 GGGACAAATAGGTGTCACTAGAATTA 58.438 38.462 2.35 0.00 46.53 1.40
3097 3248 8.211629 GGGACAAATAGGTGTCACTAGAATTAT 58.788 37.037 2.35 0.00 46.53 1.28
3124 3275 7.214467 TCATCAAGGTTGTTGTTTCTATTCC 57.786 36.000 1.69 0.00 31.53 3.01
3289 3440 3.254166 CAGTGCAAAAGGACATACAGCTT 59.746 43.478 0.00 0.00 0.00 3.74
3336 3487 5.297029 GGCTTTGGTGATACTAATGGAAGAC 59.703 44.000 0.00 0.00 0.00 3.01
3395 3546 6.229936 TGGTGGTACTAATGGTAGATGTTC 57.770 41.667 0.00 0.00 0.00 3.18
3397 3548 6.127168 TGGTGGTACTAATGGTAGATGTTCTG 60.127 42.308 0.00 0.00 0.00 3.02
3433 3584 0.607762 TGCAAAGGCGCTGATGGTAA 60.608 50.000 7.64 0.00 45.35 2.85
3474 3625 6.198591 GTGAGTGTATCGTTAGGAAGTAATGC 59.801 42.308 0.00 0.00 0.00 3.56
3660 3811 2.355132 TGGATTTACGCACAAACGTTGT 59.645 40.909 0.00 0.00 45.75 3.32
3753 3904 5.245075 ACCACCAAGAAAAAGTGAGTTTGAA 59.755 36.000 0.00 0.00 33.21 2.69
3754 3905 6.162777 CCACCAAGAAAAAGTGAGTTTGAAA 58.837 36.000 0.00 0.00 33.21 2.69
3862 4029 6.968904 CAGATATTGTAAACAACCATGCTGAC 59.031 38.462 0.00 0.00 38.86 3.51
4034 4216 4.524802 AAATAGGCAGATCCACATTCCA 57.475 40.909 0.00 0.00 37.29 3.53
4035 4217 4.736611 AATAGGCAGATCCACATTCCAT 57.263 40.909 0.00 0.00 37.29 3.41
4036 4218 2.359981 AGGCAGATCCACATTCCATG 57.640 50.000 0.00 0.00 37.29 3.66
4037 4219 1.567649 AGGCAGATCCACATTCCATGT 59.432 47.619 0.00 0.00 46.22 3.21
4038 4220 2.779430 AGGCAGATCCACATTCCATGTA 59.221 45.455 0.00 0.00 42.70 2.29
4042 4224 5.513788 GGCAGATCCACATTCCATGTAGTAT 60.514 44.000 0.00 0.00 42.70 2.12
4046 4228 8.316946 CAGATCCACATTCCATGTAGTATATGT 58.683 37.037 6.20 0.00 42.70 2.29
4162 4346 4.281435 TGGCATGTGTGATCAATGAAAAGT 59.719 37.500 9.57 0.00 0.00 2.66
4196 4380 6.942532 TCTGCATTGACTTTGAAACTAGTT 57.057 33.333 1.12 1.12 0.00 2.24
4205 4389 1.136690 TGAAACTAGTTGCTGTCGCG 58.863 50.000 14.83 0.00 39.65 5.87
4218 4402 3.435327 TGCTGTCGCGTAAATTTTCTGAT 59.565 39.130 5.77 0.00 39.65 2.90
4219 4403 4.022475 GCTGTCGCGTAAATTTTCTGATC 58.978 43.478 5.77 0.00 0.00 2.92
4263 4453 3.556423 GGAACCAAAGAGAAACGCCTAGA 60.556 47.826 0.00 0.00 0.00 2.43
4267 4457 3.390135 CAAAGAGAAACGCCTAGACACA 58.610 45.455 0.00 0.00 0.00 3.72
4298 4488 4.785346 ACAATGTCTGAATAGCAGGGAT 57.215 40.909 0.00 0.00 44.98 3.85
4299 4489 4.712476 ACAATGTCTGAATAGCAGGGATC 58.288 43.478 0.00 0.00 44.98 3.36
4300 4490 4.411540 ACAATGTCTGAATAGCAGGGATCT 59.588 41.667 0.00 0.00 44.98 2.75
4301 4491 5.104193 ACAATGTCTGAATAGCAGGGATCTT 60.104 40.000 0.00 0.00 44.98 2.40
4302 4492 5.643421 ATGTCTGAATAGCAGGGATCTTT 57.357 39.130 0.00 0.00 44.98 2.52
4303 4493 5.441718 TGTCTGAATAGCAGGGATCTTTT 57.558 39.130 0.00 0.00 44.98 2.27
4304 4494 5.188434 TGTCTGAATAGCAGGGATCTTTTG 58.812 41.667 0.00 0.00 44.98 2.44
4305 4495 5.189180 GTCTGAATAGCAGGGATCTTTTGT 58.811 41.667 0.00 0.00 44.98 2.83
4306 4496 5.649831 GTCTGAATAGCAGGGATCTTTTGTT 59.350 40.000 0.00 0.00 44.98 2.83
4307 4497 6.823689 GTCTGAATAGCAGGGATCTTTTGTTA 59.176 38.462 0.00 0.00 44.98 2.41
4308 4498 7.336931 GTCTGAATAGCAGGGATCTTTTGTTAA 59.663 37.037 0.00 0.00 44.98 2.01
4309 4499 7.888021 TCTGAATAGCAGGGATCTTTTGTTAAA 59.112 33.333 0.00 0.00 44.98 1.52
4310 4500 7.826690 TGAATAGCAGGGATCTTTTGTTAAAC 58.173 34.615 0.00 0.00 0.00 2.01
4311 4501 7.450014 TGAATAGCAGGGATCTTTTGTTAAACA 59.550 33.333 0.00 0.00 0.00 2.83
4312 4502 7.775053 ATAGCAGGGATCTTTTGTTAAACAA 57.225 32.000 0.00 0.00 36.11 2.83
4313 4503 6.670695 AGCAGGGATCTTTTGTTAAACAAT 57.329 33.333 0.00 0.00 38.00 2.71
4314 4504 6.458210 AGCAGGGATCTTTTGTTAAACAATG 58.542 36.000 0.00 0.00 38.00 2.82
4315 4505 5.639082 GCAGGGATCTTTTGTTAAACAATGG 59.361 40.000 0.00 0.00 38.00 3.16
4316 4506 6.518200 GCAGGGATCTTTTGTTAAACAATGGA 60.518 38.462 0.00 0.00 38.00 3.41
4317 4507 6.868339 CAGGGATCTTTTGTTAAACAATGGAC 59.132 38.462 0.00 0.00 38.00 4.02
4318 4508 5.861787 GGGATCTTTTGTTAAACAATGGACG 59.138 40.000 0.00 0.00 38.00 4.79
4319 4509 5.861787 GGATCTTTTGTTAAACAATGGACGG 59.138 40.000 0.00 0.00 38.00 4.79
4320 4510 5.838531 TCTTTTGTTAAACAATGGACGGT 57.161 34.783 0.00 0.00 38.00 4.83
4321 4511 6.939132 TCTTTTGTTAAACAATGGACGGTA 57.061 33.333 0.00 0.00 38.00 4.02
4322 4512 6.961576 TCTTTTGTTAAACAATGGACGGTAG 58.038 36.000 0.00 0.00 38.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 1.580845 GCAAGCAAGGTGATGACGCT 61.581 55.000 0.00 0.00 33.45 5.07
91 94 1.278537 TGCTCATCATGTCCTCCACA 58.721 50.000 0.00 0.00 40.18 4.17
123 126 2.610859 TGGTGCTTCTCCTCCCCC 60.611 66.667 0.00 0.00 0.00 5.40
124 127 1.201429 TTCTGGTGCTTCTCCTCCCC 61.201 60.000 0.00 0.00 0.00 4.81
140 143 5.380043 TCATTTGCTCTTCCTTGTCTTTCT 58.620 37.500 0.00 0.00 0.00 2.52
142 145 6.453092 CATTCATTTGCTCTTCCTTGTCTTT 58.547 36.000 0.00 0.00 0.00 2.52
189 193 1.222936 CGCCTCCATCTCAAGCCTT 59.777 57.895 0.00 0.00 0.00 4.35
220 224 1.873069 CGCCTCCATCTCAAGCATCTC 60.873 57.143 0.00 0.00 0.00 2.75
243 247 1.364626 CGAGCATCTTCGCTTGCCTT 61.365 55.000 0.00 0.00 44.01 4.35
245 249 1.760268 CTCGAGCATCTTCGCTTGCC 61.760 60.000 0.00 0.00 44.01 4.52
284 288 2.489722 GCCACTTCTTTCACCTTGATCC 59.510 50.000 0.00 0.00 0.00 3.36
287 291 1.593196 CGCCACTTCTTTCACCTTGA 58.407 50.000 0.00 0.00 0.00 3.02
293 297 2.317609 GCGAGCGCCACTTCTTTCA 61.318 57.895 2.29 0.00 34.56 2.69
312 316 0.393077 CCACCCCCGTCATCATACTC 59.607 60.000 0.00 0.00 0.00 2.59
315 319 0.263468 TCTCCACCCCCGTCATCATA 59.737 55.000 0.00 0.00 0.00 2.15
435 439 2.214376 AAAAATGGATGACGCTCCCA 57.786 45.000 0.00 0.00 34.12 4.37
555 563 1.321474 CCACACAGTTCATGTTGGCT 58.679 50.000 0.00 0.00 41.41 4.75
607 618 2.037511 TCATGTCGATATCATGCCAGCA 59.962 45.455 9.10 0.00 41.40 4.41
644 656 2.996249 AGATCATGTCAGCGGTCATT 57.004 45.000 0.00 0.00 0.00 2.57
648 661 1.270518 GCCATAGATCATGTCAGCGGT 60.271 52.381 0.00 0.00 32.21 5.68
674 687 6.723298 TGTCCACACATAAATTTGAAAGGT 57.277 33.333 0.00 0.00 0.00 3.50
764 785 3.328237 TTTTCGTTCTTTTGAGTCGCC 57.672 42.857 0.00 0.00 0.00 5.54
787 810 6.878923 ACTCAAATGGATGTCGATTTTGTCTA 59.121 34.615 0.96 0.00 33.05 2.59
799 823 2.027192 ACGTGCCTACTCAAATGGATGT 60.027 45.455 0.00 0.00 0.00 3.06
817 841 5.294356 TGTGTATAAGAGCAACTTCAACGT 58.706 37.500 0.00 0.00 39.72 3.99
837 862 0.460311 GTACTCCCTCCGTCCATGTG 59.540 60.000 0.00 0.00 0.00 3.21
838 863 0.335361 AGTACTCCCTCCGTCCATGT 59.665 55.000 0.00 0.00 0.00 3.21
839 864 1.033574 GAGTACTCCCTCCGTCCATG 58.966 60.000 12.13 0.00 0.00 3.66
840 865 0.629596 TGAGTACTCCCTCCGTCCAT 59.370 55.000 20.11 0.00 0.00 3.41
841 866 0.629596 ATGAGTACTCCCTCCGTCCA 59.370 55.000 20.11 0.00 0.00 4.02
842 867 1.777941 AATGAGTACTCCCTCCGTCC 58.222 55.000 20.11 0.00 0.00 4.79
843 868 3.698040 TGTAAATGAGTACTCCCTCCGTC 59.302 47.826 20.11 5.71 0.00 4.79
844 869 3.705051 TGTAAATGAGTACTCCCTCCGT 58.295 45.455 20.11 2.62 0.00 4.69
845 870 4.939052 ATGTAAATGAGTACTCCCTCCG 57.061 45.455 20.11 0.00 0.00 4.63
846 871 7.173390 GCATAAATGTAAATGAGTACTCCCTCC 59.827 40.741 20.11 5.25 0.00 4.30
847 872 7.173390 GGCATAAATGTAAATGAGTACTCCCTC 59.827 40.741 20.11 6.99 0.00 4.30
848 873 6.998673 GGCATAAATGTAAATGAGTACTCCCT 59.001 38.462 20.11 4.85 0.00 4.20
849 874 6.770785 TGGCATAAATGTAAATGAGTACTCCC 59.229 38.462 20.11 8.92 0.00 4.30
850 875 7.801716 TGGCATAAATGTAAATGAGTACTCC 57.198 36.000 20.11 4.85 0.00 3.85
851 876 7.805071 GCATGGCATAAATGTAAATGAGTACTC 59.195 37.037 16.32 16.32 0.00 2.59
852 877 7.285172 TGCATGGCATAAATGTAAATGAGTACT 59.715 33.333 0.00 0.00 31.71 2.73
853 878 7.424803 TGCATGGCATAAATGTAAATGAGTAC 58.575 34.615 0.00 0.00 31.71 2.73
854 879 7.579761 TGCATGGCATAAATGTAAATGAGTA 57.420 32.000 0.00 0.00 31.71 2.59
855 880 6.468333 TGCATGGCATAAATGTAAATGAGT 57.532 33.333 0.00 0.00 31.71 3.41
875 900 2.358125 CCGTCACCGTCCAATGCA 60.358 61.111 0.00 0.00 0.00 3.96
1186 1271 3.515901 GTGGACTTCTGGTACTTCCTGAT 59.484 47.826 0.00 0.00 42.33 2.90
1211 1296 3.854669 CGAAGGGGATGAGCGGCT 61.855 66.667 0.00 0.00 0.00 5.52
1410 1504 0.972883 GAGTCCAGTGGTTCAGCTCT 59.027 55.000 9.54 0.00 0.00 4.09
1441 1535 0.108615 CCGACCTCTTGCAACGAGAT 60.109 55.000 20.66 9.26 0.00 2.75
1463 1557 1.133025 CAGGTTTCGGCATTGACCATC 59.867 52.381 0.00 0.00 34.60 3.51
1533 1627 5.344066 TGTCTCGCAATTCTCAGAACTATC 58.656 41.667 0.00 0.00 0.00 2.08
1602 1696 7.992608 ACAGATGTATCAACTGCATTAATACCA 59.007 33.333 6.87 0.00 37.71 3.25
1727 1831 2.558795 CACTCTTTGAAGGACGGAGAGA 59.441 50.000 5.75 0.00 37.77 3.10
1730 1834 2.821991 ACACTCTTTGAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
1732 1836 3.662247 AGTACACTCTTTGAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
1733 1837 3.988517 GGAAGTACACTCTTTGAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
1734 1838 4.957296 TGGAAGTACACTCTTTGAAGGAC 58.043 43.478 0.00 0.00 0.00 3.85
1735 1839 5.130477 AGTTGGAAGTACACTCTTTGAAGGA 59.870 40.000 0.00 0.00 0.00 3.36
1736 1840 5.368989 AGTTGGAAGTACACTCTTTGAAGG 58.631 41.667 0.00 0.00 0.00 3.46
1737 1841 6.927294 AAGTTGGAAGTACACTCTTTGAAG 57.073 37.500 0.00 0.00 0.00 3.02
1738 1842 6.657541 ACAAAGTTGGAAGTACACTCTTTGAA 59.342 34.615 19.32 4.44 40.69 2.69
1739 1843 6.177610 ACAAAGTTGGAAGTACACTCTTTGA 58.822 36.000 19.32 0.00 40.69 2.69
1740 1844 6.436843 ACAAAGTTGGAAGTACACTCTTTG 57.563 37.500 14.27 14.27 42.09 2.77
1741 1845 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
1742 1846 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
1743 1847 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
1744 1848 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
1745 1849 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
1746 1850 4.879545 TCTCCAACAAAGTTGGAAGTACAC 59.120 41.667 26.25 0.00 46.85 2.90
1747 1851 5.105567 TCTCCAACAAAGTTGGAAGTACA 57.894 39.130 26.25 8.75 46.85 2.90
1748 1852 5.123936 ACTCTCCAACAAAGTTGGAAGTAC 58.876 41.667 26.25 0.00 46.85 2.73
1749 1853 5.104693 TGACTCTCCAACAAAGTTGGAAGTA 60.105 40.000 27.19 18.52 46.85 2.24
1750 1854 4.200092 GACTCTCCAACAAAGTTGGAAGT 58.800 43.478 27.33 27.33 46.85 3.01
1751 1855 4.199310 TGACTCTCCAACAAAGTTGGAAG 58.801 43.478 26.25 24.81 46.85 3.46
1752 1856 4.229304 TGACTCTCCAACAAAGTTGGAA 57.771 40.909 26.25 17.81 46.85 3.53
1753 1857 3.924114 TGACTCTCCAACAAAGTTGGA 57.076 42.857 25.17 25.17 45.61 3.53
1754 1858 4.399303 AGTTTGACTCTCCAACAAAGTTGG 59.601 41.667 20.09 20.09 40.87 3.77
1755 1859 5.567138 AGTTTGACTCTCCAACAAAGTTG 57.433 39.130 3.00 3.00 34.79 3.16
1756 1860 7.283329 AGATAGTTTGACTCTCCAACAAAGTT 58.717 34.615 0.00 0.00 37.95 2.66
1757 1861 6.831976 AGATAGTTTGACTCTCCAACAAAGT 58.168 36.000 0.00 0.00 39.45 2.66
1758 1862 6.931281 TGAGATAGTTTGACTCTCCAACAAAG 59.069 38.462 0.00 0.00 35.59 2.77
1759 1863 6.826668 TGAGATAGTTTGACTCTCCAACAAA 58.173 36.000 0.00 0.00 35.59 2.83
1760 1864 6.419484 TGAGATAGTTTGACTCTCCAACAA 57.581 37.500 0.00 0.00 35.59 2.83
1761 1865 6.419484 TTGAGATAGTTTGACTCTCCAACA 57.581 37.500 0.00 0.00 35.59 3.33
1762 1866 6.931840 ACTTTGAGATAGTTTGACTCTCCAAC 59.068 38.462 0.00 0.00 35.59 3.77
1763 1867 7.067496 ACTTTGAGATAGTTTGACTCTCCAA 57.933 36.000 0.00 0.00 35.59 3.53
1764 1868 6.672266 ACTTTGAGATAGTTTGACTCTCCA 57.328 37.500 0.00 0.00 35.59 3.86
1765 1869 7.971183 AAACTTTGAGATAGTTTGACTCTCC 57.029 36.000 0.00 0.00 42.54 3.71
1773 1877 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
1774 1878 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
1775 1879 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
1776 1880 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
1777 1881 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
1778 1882 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
1779 1883 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
1780 1884 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
1781 1885 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
1782 1886 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
1783 1887 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
1784 1888 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
1785 1889 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
1786 1890 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
1787 1891 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
1788 1892 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
1789 1893 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
1790 1894 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
1791 1895 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
1792 1896 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
1793 1897 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
1799 1903 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
1810 1914 9.874205 CCTATTTGGTTTCACAAACATTGATAT 57.126 29.630 1.78 0.00 42.51 1.63
1811 1915 9.083422 TCCTATTTGGTTTCACAAACATTGATA 57.917 29.630 1.78 0.00 42.51 2.15
1812 1916 7.961351 TCCTATTTGGTTTCACAAACATTGAT 58.039 30.769 1.78 0.00 42.51 2.57
1813 1917 7.069331 ACTCCTATTTGGTTTCACAAACATTGA 59.931 33.333 1.78 0.00 42.51 2.57
1814 1918 7.209475 ACTCCTATTTGGTTTCACAAACATTG 58.791 34.615 1.78 0.00 42.51 2.82
1815 1919 7.360113 ACTCCTATTTGGTTTCACAAACATT 57.640 32.000 1.78 0.00 42.51 2.71
1816 1920 6.976934 ACTCCTATTTGGTTTCACAAACAT 57.023 33.333 1.78 0.00 42.51 2.71
1817 1921 7.040062 CCATACTCCTATTTGGTTTCACAAACA 60.040 37.037 1.78 0.00 42.51 2.83
1818 1922 7.039993 ACCATACTCCTATTTGGTTTCACAAAC 60.040 37.037 0.00 0.00 42.51 2.93
1819 1923 7.007723 ACCATACTCCTATTTGGTTTCACAAA 58.992 34.615 0.00 0.00 39.41 2.83
1820 1924 6.432783 CACCATACTCCTATTTGGTTTCACAA 59.567 38.462 0.00 0.00 40.44 3.33
1821 1925 5.943416 CACCATACTCCTATTTGGTTTCACA 59.057 40.000 0.00 0.00 40.44 3.58
1822 1926 6.177610 TCACCATACTCCTATTTGGTTTCAC 58.822 40.000 0.00 0.00 40.44 3.18
1823 1927 6.381498 TCACCATACTCCTATTTGGTTTCA 57.619 37.500 0.00 0.00 40.44 2.69
1824 1928 7.696992 TTTCACCATACTCCTATTTGGTTTC 57.303 36.000 0.00 0.00 40.44 2.78
1825 1929 8.664669 ATTTTCACCATACTCCTATTTGGTTT 57.335 30.769 0.00 0.00 40.44 3.27
1826 1930 9.936329 ATATTTTCACCATACTCCTATTTGGTT 57.064 29.630 0.00 0.00 40.44 3.67
1873 1977 9.507280 CCAACATTTATGCTGTCAAATTAGTAG 57.493 33.333 0.00 0.00 0.00 2.57
1874 1978 9.019656 ACCAACATTTATGCTGTCAAATTAGTA 57.980 29.630 0.00 0.00 0.00 1.82
1875 1979 7.814107 CACCAACATTTATGCTGTCAAATTAGT 59.186 33.333 0.00 0.00 0.00 2.24
1876 1980 7.814107 ACACCAACATTTATGCTGTCAAATTAG 59.186 33.333 0.00 0.00 0.00 1.73
1877 1981 7.665690 ACACCAACATTTATGCTGTCAAATTA 58.334 30.769 0.00 0.00 0.00 1.40
1878 1982 6.523840 ACACCAACATTTATGCTGTCAAATT 58.476 32.000 0.00 0.00 0.00 1.82
1879 1983 6.100404 ACACCAACATTTATGCTGTCAAAT 57.900 33.333 0.00 0.00 0.00 2.32
1880 1984 5.528043 ACACCAACATTTATGCTGTCAAA 57.472 34.783 0.00 0.00 0.00 2.69
1881 1985 5.767665 AGTACACCAACATTTATGCTGTCAA 59.232 36.000 0.00 0.00 0.00 3.18
1882 1986 5.312895 AGTACACCAACATTTATGCTGTCA 58.687 37.500 0.00 0.00 0.00 3.58
1883 1987 5.880054 AGTACACCAACATTTATGCTGTC 57.120 39.130 0.00 0.00 0.00 3.51
1884 1988 7.393234 ACAATAGTACACCAACATTTATGCTGT 59.607 33.333 0.00 0.00 0.00 4.40
1885 1989 7.761409 ACAATAGTACACCAACATTTATGCTG 58.239 34.615 0.00 0.00 0.00 4.41
1886 1990 7.938140 ACAATAGTACACCAACATTTATGCT 57.062 32.000 0.00 0.00 0.00 3.79
1946 2050 9.841295 TTGTTGGAAAGTCAAACTAGTAGTATT 57.159 29.630 2.50 0.00 0.00 1.89
1947 2051 9.841295 TTTGTTGGAAAGTCAAACTAGTAGTAT 57.159 29.630 2.50 0.00 0.00 2.12
1948 2052 9.321562 CTTTGTTGGAAAGTCAAACTAGTAGTA 57.678 33.333 2.50 0.00 0.00 1.82
1949 2053 7.827729 ACTTTGTTGGAAAGTCAAACTAGTAGT 59.172 33.333 0.00 0.00 35.76 2.73
1950 2054 8.209917 ACTTTGTTGGAAAGTCAAACTAGTAG 57.790 34.615 0.00 0.00 35.76 2.57
1951 2055 8.455682 CAACTTTGTTGGAAAGTCAAACTAGTA 58.544 33.333 0.00 0.00 39.36 1.82
1952 2056 7.312899 CAACTTTGTTGGAAAGTCAAACTAGT 58.687 34.615 0.00 0.00 39.36 2.57
1953 2057 6.751888 CCAACTTTGTTGGAAAGTCAAACTAG 59.248 38.462 21.06 0.00 42.06 2.57
1954 2058 6.434652 TCCAACTTTGTTGGAAAGTCAAACTA 59.565 34.615 24.52 3.12 44.90 2.24
1955 2059 5.245075 TCCAACTTTGTTGGAAAGTCAAACT 59.755 36.000 24.52 0.00 44.90 2.66
1956 2060 5.474825 TCCAACTTTGTTGGAAAGTCAAAC 58.525 37.500 24.52 0.00 44.90 2.93
1957 2061 5.730296 TCCAACTTTGTTGGAAAGTCAAA 57.270 34.783 24.52 4.81 44.90 2.69
1965 2069 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
1966 2070 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
1967 2071 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
1968 2072 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
1969 2073 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
1970 2074 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
1971 2075 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
1972 2076 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
1973 2077 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
1974 2078 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
1975 2079 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
1976 2080 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
1977 2081 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
1978 2082 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
1979 2083 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
1980 2084 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
1981 2085 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
1982 2086 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
1983 2087 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
1984 2088 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
1985 2089 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
1986 2090 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
1987 2091 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
1988 2092 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
1989 2093 1.897802 GTACTCCCTCCGTCCTTGAAA 59.102 52.381 0.00 0.00 0.00 2.69
1990 2094 1.203087 TGTACTCCCTCCGTCCTTGAA 60.203 52.381 0.00 0.00 0.00 2.69
1991 2095 0.406750 TGTACTCCCTCCGTCCTTGA 59.593 55.000 0.00 0.00 0.00 3.02
1992 2096 0.531200 GTGTACTCCCTCCGTCCTTG 59.469 60.000 0.00 0.00 0.00 3.61
1993 2097 0.408700 AGTGTACTCCCTCCGTCCTT 59.591 55.000 0.00 0.00 0.00 3.36
1994 2098 0.323542 CAGTGTACTCCCTCCGTCCT 60.324 60.000 0.00 0.00 0.00 3.85
1995 2099 0.611340 ACAGTGTACTCCCTCCGTCC 60.611 60.000 0.00 0.00 0.00 4.79
1996 2100 0.526662 CACAGTGTACTCCCTCCGTC 59.473 60.000 0.00 0.00 0.00 4.79
1997 2101 0.178970 ACACAGTGTACTCCCTCCGT 60.179 55.000 3.69 0.00 0.00 4.69
1998 2102 0.526662 GACACAGTGTACTCCCTCCG 59.473 60.000 6.06 0.00 0.00 4.63
1999 2103 1.926108 AGACACAGTGTACTCCCTCC 58.074 55.000 6.06 0.00 0.00 4.30
2000 2104 2.610727 GCAAGACACAGTGTACTCCCTC 60.611 54.545 6.06 0.00 0.00 4.30
2001 2105 1.344763 GCAAGACACAGTGTACTCCCT 59.655 52.381 6.06 0.00 0.00 4.20
2002 2106 1.070134 TGCAAGACACAGTGTACTCCC 59.930 52.381 6.06 0.00 0.00 4.30
2003 2107 2.526304 TGCAAGACACAGTGTACTCC 57.474 50.000 6.06 0.00 0.00 3.85
2004 2108 3.194861 TGTTGCAAGACACAGTGTACTC 58.805 45.455 6.06 0.00 0.00 2.59
2005 2109 3.260475 TGTTGCAAGACACAGTGTACT 57.740 42.857 6.06 3.04 0.00 2.73
2006 2110 5.666969 TTATGTTGCAAGACACAGTGTAC 57.333 39.130 6.06 0.27 31.30 2.90
2007 2111 5.994668 TGATTATGTTGCAAGACACAGTGTA 59.005 36.000 6.06 0.00 31.30 2.90
2045 2149 1.062002 AGTTCAGTTTTGCGTGTGTCG 59.938 47.619 0.00 0.00 43.12 4.35
2046 2150 2.825086 AGTTCAGTTTTGCGTGTGTC 57.175 45.000 0.00 0.00 0.00 3.67
2047 2151 4.893424 AATAGTTCAGTTTTGCGTGTGT 57.107 36.364 0.00 0.00 0.00 3.72
2048 2152 5.034152 ACAAATAGTTCAGTTTTGCGTGTG 58.966 37.500 0.00 0.00 34.47 3.82
2049 2153 5.243426 ACAAATAGTTCAGTTTTGCGTGT 57.757 34.783 0.00 0.00 34.47 4.49
2094 2198 4.155709 TCTTCCTCACTTCTCAGTCACAT 58.844 43.478 0.00 0.00 0.00 3.21
2137 2244 8.465999 GGACACATAACCATCACATGATAAAAA 58.534 33.333 0.00 0.00 32.63 1.94
2672 2809 8.417106 TCTGATAACTGTGGATCTTCTAATCAC 58.583 37.037 0.00 0.00 0.00 3.06
2767 2907 1.181786 TCCCGCAAAAAGGCCATAAG 58.818 50.000 5.01 0.00 0.00 1.73
2775 2915 5.616645 GCCATAATTGTTTTCCCGCAAAAAG 60.617 40.000 0.00 0.00 35.68 2.27
2809 2957 6.545666 TCATTAGAAAACTGAAAACTCTGGCA 59.454 34.615 0.00 0.00 0.00 4.92
2815 2963 9.768662 AAATGCATCATTAGAAAACTGAAAACT 57.231 25.926 0.00 0.00 32.43 2.66
2817 2965 9.985730 AGAAATGCATCATTAGAAAACTGAAAA 57.014 25.926 0.00 0.00 32.43 2.29
2820 2968 9.671279 TCTAGAAATGCATCATTAGAAAACTGA 57.329 29.630 0.00 0.00 32.43 3.41
3049 3200 9.758651 GTCCCTAACTGAAAACATTTATTTGTT 57.241 29.630 0.00 0.00 41.49 2.83
3050 3201 8.919145 TGTCCCTAACTGAAAACATTTATTTGT 58.081 29.630 0.00 0.00 0.00 2.83
3051 3202 9.757227 TTGTCCCTAACTGAAAACATTTATTTG 57.243 29.630 0.00 0.00 0.00 2.32
3056 3207 8.585018 CCTATTTGTCCCTAACTGAAAACATTT 58.415 33.333 0.00 0.00 0.00 2.32
3057 3208 7.728532 ACCTATTTGTCCCTAACTGAAAACATT 59.271 33.333 0.00 0.00 0.00 2.71
3058 3209 7.176690 CACCTATTTGTCCCTAACTGAAAACAT 59.823 37.037 0.00 0.00 0.00 2.71
3059 3210 6.488683 CACCTATTTGTCCCTAACTGAAAACA 59.511 38.462 0.00 0.00 0.00 2.83
3060 3211 6.489022 ACACCTATTTGTCCCTAACTGAAAAC 59.511 38.462 0.00 0.00 0.00 2.43
3061 3212 6.607019 ACACCTATTTGTCCCTAACTGAAAA 58.393 36.000 0.00 0.00 0.00 2.29
3062 3213 6.183361 TGACACCTATTTGTCCCTAACTGAAA 60.183 38.462 0.98 0.00 44.63 2.69
3063 3214 5.308497 TGACACCTATTTGTCCCTAACTGAA 59.692 40.000 0.98 0.00 44.63 3.02
3064 3215 4.841813 TGACACCTATTTGTCCCTAACTGA 59.158 41.667 0.98 0.00 44.63 3.41
3065 3216 4.935808 GTGACACCTATTTGTCCCTAACTG 59.064 45.833 0.00 0.00 44.63 3.16
3066 3217 4.844655 AGTGACACCTATTTGTCCCTAACT 59.155 41.667 0.84 0.00 44.63 2.24
3067 3218 5.161943 AGTGACACCTATTTGTCCCTAAC 57.838 43.478 0.84 0.00 44.63 2.34
3068 3219 6.258354 TCTAGTGACACCTATTTGTCCCTAA 58.742 40.000 0.84 0.00 44.63 2.69
3069 3220 5.834460 TCTAGTGACACCTATTTGTCCCTA 58.166 41.667 0.84 0.00 44.63 3.53
3070 3221 4.684724 TCTAGTGACACCTATTTGTCCCT 58.315 43.478 0.84 0.00 44.63 4.20
3071 3222 5.416271 TTCTAGTGACACCTATTTGTCCC 57.584 43.478 0.84 0.00 44.63 4.46
3072 3223 9.614792 AATAATTCTAGTGACACCTATTTGTCC 57.385 33.333 0.84 0.00 44.63 4.02
3098 3249 8.956426 GGAATAGAAACAACAACCTTGATGATA 58.044 33.333 2.60 0.00 35.28 2.15
3099 3250 7.451255 TGGAATAGAAACAACAACCTTGATGAT 59.549 33.333 2.60 0.00 35.28 2.45
3100 3251 6.775142 TGGAATAGAAACAACAACCTTGATGA 59.225 34.615 2.60 0.00 35.28 2.92
3101 3252 6.980593 TGGAATAGAAACAACAACCTTGATG 58.019 36.000 0.00 0.00 37.05 3.07
3102 3253 7.595819 TTGGAATAGAAACAACAACCTTGAT 57.404 32.000 0.00 0.00 0.00 2.57
3103 3254 7.595819 ATTGGAATAGAAACAACAACCTTGA 57.404 32.000 0.00 0.00 0.00 3.02
3104 3255 9.191995 GTTATTGGAATAGAAACAACAACCTTG 57.808 33.333 0.00 0.00 28.22 3.61
3105 3256 8.919145 TGTTATTGGAATAGAAACAACAACCTT 58.081 29.630 0.00 0.00 32.24 3.50
3106 3257 8.472007 TGTTATTGGAATAGAAACAACAACCT 57.528 30.769 0.00 0.00 32.24 3.50
3107 3258 9.535878 TTTGTTATTGGAATAGAAACAACAACC 57.464 29.630 0.00 0.00 32.24 3.77
3232 3383 4.170468 AGGTCAGGTGAACAGAAACATT 57.830 40.909 0.00 0.00 33.22 2.71
3311 3462 4.853468 TCCATTAGTATCACCAAAGCCA 57.147 40.909 0.00 0.00 0.00 4.75
3336 3487 2.289002 GCTCCCTATGATGCAGAAAACG 59.711 50.000 0.00 0.00 0.00 3.60
3395 3546 2.019249 CATTGCACCCCTCATACACAG 58.981 52.381 0.00 0.00 0.00 3.66
3397 3548 0.740737 GCATTGCACCCCTCATACAC 59.259 55.000 3.15 0.00 0.00 2.90
3433 3584 2.041620 ACTCACAAACATACTGGGCCAT 59.958 45.455 6.72 0.00 0.00 4.40
3474 3625 9.507280 CATGCTAACTAAATGAAAATACACCTG 57.493 33.333 0.00 0.00 0.00 4.00
3660 3811 7.717875 AGTGATTAGGTTACAGCAAACAGTTTA 59.282 33.333 0.00 0.00 0.00 2.01
3753 3904 4.099881 TCAGGCAGTTCAGCAAGAAAAATT 59.900 37.500 0.00 0.00 38.13 1.82
3754 3905 3.638160 TCAGGCAGTTCAGCAAGAAAAAT 59.362 39.130 0.00 0.00 38.13 1.82
3788 3944 4.384056 CTGAACTTCCTGATGACACAAGT 58.616 43.478 0.00 0.00 0.00 3.16
3862 4029 1.360551 CGGCTATCTCAGGTGACCG 59.639 63.158 0.00 0.00 0.00 4.79
4081 4263 3.903644 CGTGCGGTTACAATAAGTGTTTG 59.096 43.478 0.00 0.00 41.98 2.93
4138 4320 4.868314 TTTCATTGATCACACATGCCAA 57.132 36.364 0.00 0.00 0.00 4.52
4162 4346 3.265221 AGTCAATGCAGATTCTTCCCTCA 59.735 43.478 0.00 0.00 0.00 3.86
4196 4380 2.803386 TCAGAAAATTTACGCGACAGCA 59.197 40.909 15.93 0.00 45.49 4.41
4250 4440 1.000506 TGGTGTGTCTAGGCGTTTCTC 59.999 52.381 0.00 0.00 0.00 2.87
4263 4453 4.756642 CAGACATTGTATCACTTGGTGTGT 59.243 41.667 0.00 0.00 46.27 3.72
4267 4457 6.540189 GCTATTCAGACATTGTATCACTTGGT 59.460 38.462 0.00 0.00 0.00 3.67
4298 4488 5.838531 ACCGTCCATTGTTTAACAAAAGA 57.161 34.783 14.70 11.12 41.96 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.