Multiple sequence alignment - TraesCS1B01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G317200 chr1B 100.000 3837 0 0 782 4618 542142640 542138804 0.000000e+00 7086.0
1 TraesCS1B01G317200 chr1B 100.000 417 0 0 1 417 542143421 542143005 0.000000e+00 771.0
2 TraesCS1B01G317200 chr1B 81.183 558 82 14 2697 3241 542576650 542577197 1.190000e-115 427.0
3 TraesCS1B01G317200 chr1B 83.547 468 55 16 2785 3232 542428835 542429300 7.150000e-113 418.0
4 TraesCS1B01G317200 chr1B 97.849 93 2 0 4263 4355 258729879 258729971 1.330000e-35 161.0
5 TraesCS1B01G317200 chr1B 96.970 33 1 0 4408 4440 542138964 542138932 6.450000e-04 56.5
6 TraesCS1B01G317200 chr1B 96.970 33 1 0 4458 4490 542139014 542138982 6.450000e-04 56.5
7 TraesCS1B01G317200 chr1D 89.042 3130 157 73 956 3968 403284398 403281338 0.000000e+00 3709.0
8 TraesCS1B01G317200 chr1D 84.375 320 36 10 2785 3090 403333104 403333423 7.510000e-78 302.0
9 TraesCS1B01G317200 chr1D 80.863 371 44 13 3476 3821 403333905 403334273 2.740000e-67 267.0
10 TraesCS1B01G317200 chr1D 96.396 111 4 0 4508 4618 403277130 403277020 2.840000e-42 183.0
11 TraesCS1B01G317200 chr1D 82.511 223 15 9 4078 4290 403281191 403280983 1.710000e-39 174.0
12 TraesCS1B01G317200 chr1D 98.947 95 1 0 4261 4355 97421547 97421641 2.210000e-38 171.0
13 TraesCS1B01G317200 chr1D 83.938 193 10 9 4335 4510 403277374 403277186 1.030000e-36 165.0
14 TraesCS1B01G317200 chr1D 89.844 128 4 3 299 417 403284691 403284564 6.190000e-34 156.0
15 TraesCS1B01G317200 chr1D 96.970 33 1 0 4408 4440 403277234 403277202 6.450000e-04 56.5
16 TraesCS1B01G317200 chr1A 90.129 1945 96 40 785 2657 498542078 498540158 0.000000e+00 2440.0
17 TraesCS1B01G317200 chr1A 96.593 587 17 3 2698 3283 498540150 498539566 0.000000e+00 970.0
18 TraesCS1B01G317200 chr1A 88.791 678 30 9 3325 3965 498537780 498537112 0.000000e+00 789.0
19 TraesCS1B01G317200 chr1A 83.547 468 56 15 2785 3232 498593938 498594404 7.150000e-113 418.0
20 TraesCS1B01G317200 chr1A 98.198 111 2 0 4508 4618 498536586 498536476 1.310000e-45 195.0
21 TraesCS1B01G317200 chr1A 82.353 170 9 8 4358 4510 498536808 498536643 1.350000e-25 128.0
22 TraesCS1B01G317200 chr1A 90.805 87 6 1 4186 4272 498536897 498536813 1.050000e-21 115.0
23 TraesCS1B01G317200 chr1A 80.000 125 6 8 312 417 498542231 498542107 1.780000e-09 75.0
24 TraesCS1B01G317200 chr1A 97.436 39 1 0 3280 3318 498537803 498537765 2.980000e-07 67.6
25 TraesCS1B01G317200 chr1A 96.970 33 1 0 4408 4440 498536691 498536659 6.450000e-04 56.5
26 TraesCS1B01G317200 chr3B 98.889 90 1 0 4269 4358 42629538 42629627 1.330000e-35 161.0
27 TraesCS1B01G317200 chr3B 85.075 67 9 1 188 254 480915836 480915901 2.980000e-07 67.6
28 TraesCS1B01G317200 chr3B 83.333 72 11 1 187 257 122242344 122242273 1.070000e-06 65.8
29 TraesCS1B01G317200 chr2A 98.876 89 1 0 4270 4358 693209978 693209890 4.780000e-35 159.0
30 TraesCS1B01G317200 chr6D 95.918 98 2 2 4264 4359 400294261 400294358 1.720000e-34 158.0
31 TraesCS1B01G317200 chr6D 89.516 124 8 4 4238 4359 439490673 439490793 8.000000e-33 152.0
32 TraesCS1B01G317200 chr3A 96.809 94 3 0 4266 4359 646126826 646126919 1.720000e-34 158.0
33 TraesCS1B01G317200 chr7B 96.809 94 2 1 4263 4355 639040114 639040021 6.190000e-34 156.0
34 TraesCS1B01G317200 chr7B 91.743 109 7 2 4252 4359 702244411 702244518 2.880000e-32 150.0
35 TraesCS1B01G317200 chr2B 97.826 46 1 0 216 261 247629890 247629845 3.830000e-11 80.5
36 TraesCS1B01G317200 chr2B 89.655 58 6 0 200 257 169643825 169643882 1.780000e-09 75.0
37 TraesCS1B01G317200 chr4B 92.593 54 3 1 208 260 117191140 117191193 4.950000e-10 76.8
38 TraesCS1B01G317200 chr3D 89.831 59 5 1 208 265 923065 923123 1.780000e-09 75.0
39 TraesCS1B01G317200 chr6B 84.722 72 10 1 187 257 277158958 277159029 2.310000e-08 71.3
40 TraesCS1B01G317200 chr5B 85.075 67 9 1 188 253 240032297 240032363 2.980000e-07 67.6
41 TraesCS1B01G317200 chr5A 81.707 82 13 2 187 267 686221950 686221870 2.980000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G317200 chr1B 542138804 542143421 4617 True 1992.500000 7086 98.485000 1 4618 4 chr1B.!!$R1 4617
1 TraesCS1B01G317200 chr1B 542576650 542577197 547 False 427.000000 427 81.183000 2697 3241 1 chr1B.!!$F3 544
2 TraesCS1B01G317200 chr1D 403277020 403284691 7671 True 740.583333 3709 89.783500 299 4618 6 chr1D.!!$R1 4319
3 TraesCS1B01G317200 chr1D 403333104 403334273 1169 False 284.500000 302 82.619000 2785 3821 2 chr1D.!!$F2 1036
4 TraesCS1B01G317200 chr1A 498536476 498542231 5755 True 537.344444 2440 91.252778 312 4618 9 chr1A.!!$R1 4306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.034059 CAATAGGCAGGGTAGCGAGG 59.966 60.0 0.0 0.0 34.64 4.63 F
255 256 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.0 0.0 0.0 0.00 2.41 F
256 257 0.178926 TGGGACGGAGGGAGTACAAA 60.179 55.0 0.0 0.0 0.00 2.83 F
1616 1721 0.179009 ATGATGGATGGGGACTTGCG 60.179 55.0 0.0 0.0 0.00 4.85 F
1988 2098 1.115467 TCCCGTTTGCACCATTTGTT 58.885 45.0 0.0 0.0 0.00 2.83 F
2355 2479 1.404843 TGTTTTGGTGGCTGGTAACC 58.595 50.0 0.0 0.0 36.96 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1639 0.179163 GGAAGCGAAGAAATTGCCGG 60.179 55.000 0.00 0.00 39.48 6.13 R
1704 1809 0.727398 CGAAGAAAACTGCCGATCCC 59.273 55.000 0.00 0.00 0.00 3.85 R
1952 2062 1.409427 GGGATGAGAAAGTCGACCGAT 59.591 52.381 13.01 0.00 0.00 4.18 R
2461 2602 0.034767 AGTGTGTGGGCAGGATCATG 60.035 55.000 2.22 2.22 0.00 3.07 R
3268 3453 0.395312 ACCCGGTTTGACATCTTCGT 59.605 50.000 0.00 0.00 0.00 3.85 R
4161 6417 0.173481 TGCCAGACAGAGCGTATGTC 59.827 55.000 10.00 10.00 46.01 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.817641 TCTAGTAGATTAGCATGTGATTACCG 58.182 38.462 0.00 0.00 0.00 4.02
38 39 5.784177 AGTAGATTAGCATGTGATTACCGG 58.216 41.667 0.00 0.00 0.00 5.28
39 40 3.403038 AGATTAGCATGTGATTACCGGC 58.597 45.455 0.00 0.00 0.00 6.13
40 41 1.961793 TTAGCATGTGATTACCGGCC 58.038 50.000 0.00 0.00 0.00 6.13
41 42 0.107831 TAGCATGTGATTACCGGCCC 59.892 55.000 0.00 0.00 0.00 5.80
42 43 1.453015 GCATGTGATTACCGGCCCA 60.453 57.895 0.00 0.00 0.00 5.36
43 44 0.823356 GCATGTGATTACCGGCCCAT 60.823 55.000 0.00 0.00 0.00 4.00
44 45 1.544537 GCATGTGATTACCGGCCCATA 60.545 52.381 0.00 0.00 0.00 2.74
45 46 2.879756 GCATGTGATTACCGGCCCATAT 60.880 50.000 0.00 0.00 0.00 1.78
46 47 3.420893 CATGTGATTACCGGCCCATATT 58.579 45.455 0.00 0.00 0.00 1.28
47 48 4.584874 CATGTGATTACCGGCCCATATTA 58.415 43.478 0.00 0.00 0.00 0.98
48 49 4.708576 TGTGATTACCGGCCCATATTAA 57.291 40.909 0.00 0.00 0.00 1.40
49 50 5.249780 TGTGATTACCGGCCCATATTAAT 57.750 39.130 0.00 0.00 0.00 1.40
50 51 5.007034 TGTGATTACCGGCCCATATTAATG 58.993 41.667 0.00 0.00 0.00 1.90
51 52 5.007682 GTGATTACCGGCCCATATTAATGT 58.992 41.667 0.00 0.00 0.00 2.71
52 53 5.007034 TGATTACCGGCCCATATTAATGTG 58.993 41.667 0.00 5.27 0.00 3.21
53 54 2.286365 ACCGGCCCATATTAATGTGG 57.714 50.000 21.17 21.17 38.63 4.17
54 55 1.497286 ACCGGCCCATATTAATGTGGT 59.503 47.619 24.66 7.75 37.36 4.16
55 56 2.091555 ACCGGCCCATATTAATGTGGTT 60.092 45.455 24.66 5.84 37.36 3.67
56 57 3.138653 ACCGGCCCATATTAATGTGGTTA 59.861 43.478 24.66 0.00 37.36 2.85
57 58 3.504520 CCGGCCCATATTAATGTGGTTAC 59.495 47.826 24.66 15.60 37.36 2.50
58 59 3.187637 CGGCCCATATTAATGTGGTTACG 59.812 47.826 24.66 20.96 37.36 3.18
59 60 4.139038 GGCCCATATTAATGTGGTTACGT 58.861 43.478 24.66 0.00 37.36 3.57
60 61 5.307204 GGCCCATATTAATGTGGTTACGTA 58.693 41.667 24.66 0.00 37.36 3.57
61 62 5.764192 GGCCCATATTAATGTGGTTACGTAA 59.236 40.000 24.66 3.29 37.36 3.18
62 63 6.262720 GGCCCATATTAATGTGGTTACGTAAA 59.737 38.462 24.66 0.00 37.36 2.01
63 64 7.201803 GGCCCATATTAATGTGGTTACGTAAAA 60.202 37.037 24.66 0.00 37.36 1.52
64 65 8.354426 GCCCATATTAATGTGGTTACGTAAAAT 58.646 33.333 24.66 6.95 37.36 1.82
102 103 8.749026 TGGTAACACTTATTGACTTACCAAAA 57.251 30.769 5.33 0.00 46.17 2.44
103 104 8.842280 TGGTAACACTTATTGACTTACCAAAAG 58.158 33.333 5.33 0.00 46.17 2.27
104 105 9.059260 GGTAACACTTATTGACTTACCAAAAGA 57.941 33.333 0.00 0.00 37.40 2.52
143 144 6.827586 TTTGGTAAGTAAACAATAGGCAGG 57.172 37.500 0.00 0.00 0.00 4.85
144 145 4.850680 TGGTAAGTAAACAATAGGCAGGG 58.149 43.478 0.00 0.00 0.00 4.45
145 146 4.290196 TGGTAAGTAAACAATAGGCAGGGT 59.710 41.667 0.00 0.00 0.00 4.34
146 147 5.488203 TGGTAAGTAAACAATAGGCAGGGTA 59.512 40.000 0.00 0.00 0.00 3.69
147 148 6.053650 GGTAAGTAAACAATAGGCAGGGTAG 58.946 44.000 0.00 0.00 0.00 3.18
148 149 4.152284 AGTAAACAATAGGCAGGGTAGC 57.848 45.455 0.00 0.00 0.00 3.58
149 150 2.038387 AAACAATAGGCAGGGTAGCG 57.962 50.000 0.00 0.00 34.64 4.26
150 151 1.200519 AACAATAGGCAGGGTAGCGA 58.799 50.000 0.00 0.00 34.64 4.93
151 152 0.753262 ACAATAGGCAGGGTAGCGAG 59.247 55.000 0.00 0.00 34.64 5.03
152 153 0.034059 CAATAGGCAGGGTAGCGAGG 59.966 60.000 0.00 0.00 34.64 4.63
153 154 0.105658 AATAGGCAGGGTAGCGAGGA 60.106 55.000 0.00 0.00 34.64 3.71
154 155 0.105658 ATAGGCAGGGTAGCGAGGAA 60.106 55.000 0.00 0.00 34.64 3.36
155 156 0.324923 TAGGCAGGGTAGCGAGGAAA 60.325 55.000 0.00 0.00 34.64 3.13
156 157 0.983378 AGGCAGGGTAGCGAGGAAAT 60.983 55.000 0.00 0.00 34.64 2.17
157 158 0.756903 GGCAGGGTAGCGAGGAAATA 59.243 55.000 0.00 0.00 34.64 1.40
158 159 1.140252 GGCAGGGTAGCGAGGAAATAA 59.860 52.381 0.00 0.00 34.64 1.40
159 160 2.420967 GGCAGGGTAGCGAGGAAATAAA 60.421 50.000 0.00 0.00 34.64 1.40
160 161 3.275999 GCAGGGTAGCGAGGAAATAAAA 58.724 45.455 0.00 0.00 0.00 1.52
161 162 3.883489 GCAGGGTAGCGAGGAAATAAAAT 59.117 43.478 0.00 0.00 0.00 1.82
162 163 4.338400 GCAGGGTAGCGAGGAAATAAAATT 59.662 41.667 0.00 0.00 0.00 1.82
163 164 5.529800 GCAGGGTAGCGAGGAAATAAAATTA 59.470 40.000 0.00 0.00 0.00 1.40
164 165 6.038936 GCAGGGTAGCGAGGAAATAAAATTAA 59.961 38.462 0.00 0.00 0.00 1.40
165 166 7.415877 GCAGGGTAGCGAGGAAATAAAATTAAA 60.416 37.037 0.00 0.00 0.00 1.52
166 167 8.463607 CAGGGTAGCGAGGAAATAAAATTAAAA 58.536 33.333 0.00 0.00 0.00 1.52
167 168 9.197306 AGGGTAGCGAGGAAATAAAATTAAAAT 57.803 29.630 0.00 0.00 0.00 1.82
194 195 9.845214 AGATAGACAAATGTAGGGAATATAGGT 57.155 33.333 0.00 0.00 0.00 3.08
198 199 8.881262 AGACAAATGTAGGGAATATAGGTAAGG 58.119 37.037 0.00 0.00 0.00 2.69
199 200 8.577164 ACAAATGTAGGGAATATAGGTAAGGT 57.423 34.615 0.00 0.00 0.00 3.50
200 201 9.010767 ACAAATGTAGGGAATATAGGTAAGGTT 57.989 33.333 0.00 0.00 0.00 3.50
201 202 9.503399 CAAATGTAGGGAATATAGGTAAGGTTC 57.497 37.037 0.00 0.00 0.00 3.62
202 203 6.906157 TGTAGGGAATATAGGTAAGGTTCG 57.094 41.667 0.00 0.00 0.00 3.95
203 204 6.613699 TGTAGGGAATATAGGTAAGGTTCGA 58.386 40.000 0.00 0.00 0.00 3.71
204 205 6.491403 TGTAGGGAATATAGGTAAGGTTCGAC 59.509 42.308 0.00 0.00 0.00 4.20
205 206 4.522022 AGGGAATATAGGTAAGGTTCGACG 59.478 45.833 0.00 0.00 0.00 5.12
206 207 4.520492 GGGAATATAGGTAAGGTTCGACGA 59.480 45.833 0.00 0.00 0.00 4.20
207 208 5.184671 GGGAATATAGGTAAGGTTCGACGAT 59.815 44.000 0.00 0.00 0.00 3.73
208 209 6.375455 GGGAATATAGGTAAGGTTCGACGATA 59.625 42.308 0.00 0.00 0.00 2.92
209 210 7.067981 GGGAATATAGGTAAGGTTCGACGATAT 59.932 40.741 0.00 0.00 0.00 1.63
210 211 9.113838 GGAATATAGGTAAGGTTCGACGATATA 57.886 37.037 0.00 0.00 0.00 0.86
211 212 9.928236 GAATATAGGTAAGGTTCGACGATATAC 57.072 37.037 0.00 0.00 0.00 1.47
212 213 9.678260 AATATAGGTAAGGTTCGACGATATACT 57.322 33.333 0.00 0.00 0.00 2.12
213 214 7.992754 ATAGGTAAGGTTCGACGATATACTT 57.007 36.000 0.00 3.95 0.00 2.24
214 215 6.069684 AGGTAAGGTTCGACGATATACTTG 57.930 41.667 0.00 0.00 0.00 3.16
215 216 5.591877 AGGTAAGGTTCGACGATATACTTGT 59.408 40.000 0.00 0.00 0.00 3.16
216 217 6.767902 AGGTAAGGTTCGACGATATACTTGTA 59.232 38.462 0.00 0.00 0.00 2.41
217 218 7.446625 AGGTAAGGTTCGACGATATACTTGTAT 59.553 37.037 0.00 0.00 0.00 2.29
218 219 7.748241 GGTAAGGTTCGACGATATACTTGTATC 59.252 40.741 0.00 0.00 0.00 2.24
242 243 8.356533 TCGAAAACGTTCTTATATTATGGGAC 57.643 34.615 0.00 0.00 0.00 4.46
243 244 7.167968 TCGAAAACGTTCTTATATTATGGGACG 59.832 37.037 0.00 9.33 0.00 4.79
244 245 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
245 246 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
246 247 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
247 248 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
248 249 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
249 250 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
250 251 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
251 252 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
252 253 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
253 254 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
254 255 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
255 256 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.000 0.00 0.00 0.00 2.41
256 257 0.178926 TGGGACGGAGGGAGTACAAA 60.179 55.000 0.00 0.00 0.00 2.83
257 258 1.201424 GGGACGGAGGGAGTACAAAT 58.799 55.000 0.00 0.00 0.00 2.32
258 259 2.292389 TGGGACGGAGGGAGTACAAATA 60.292 50.000 0.00 0.00 0.00 1.40
259 260 2.970640 GGGACGGAGGGAGTACAAATAT 59.029 50.000 0.00 0.00 0.00 1.28
260 261 3.390311 GGGACGGAGGGAGTACAAATATT 59.610 47.826 0.00 0.00 0.00 1.28
261 262 4.141551 GGGACGGAGGGAGTACAAATATTT 60.142 45.833 0.00 0.00 0.00 1.40
262 263 5.434408 GGACGGAGGGAGTACAAATATTTT 58.566 41.667 0.00 0.00 0.00 1.82
263 264 5.884232 GGACGGAGGGAGTACAAATATTTTT 59.116 40.000 0.00 0.00 0.00 1.94
336 344 3.063316 TCGACATGTGTGAAACTTGTGTG 59.937 43.478 1.15 0.00 44.73 3.82
351 359 2.260434 GTGGAACGCGAGGCACTA 59.740 61.111 15.93 0.00 41.55 2.74
372 382 1.162698 TCCAACGGTCACTAGACGAG 58.837 55.000 0.00 0.00 45.92 4.18
379 389 0.726256 GTCACTAGACGAGTCGGGAC 59.274 60.000 18.30 10.10 35.64 4.46
889 922 0.955919 CCACCCGCTTTTCTCTCCAC 60.956 60.000 0.00 0.00 0.00 4.02
890 923 1.004918 ACCCGCTTTTCTCTCCACG 60.005 57.895 0.00 0.00 0.00 4.94
922 955 2.186076 CGCCGCAGTAAAACAAACAAA 58.814 42.857 0.00 0.00 0.00 2.83
951 1000 4.374689 AAAAAGAAACTCCTCCCTCCTC 57.625 45.455 0.00 0.00 0.00 3.71
959 1008 2.018086 CCTCCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1043 1092 2.217038 TCAGGAAGACCAAGGCGCT 61.217 57.895 7.64 0.00 38.94 5.92
1063 1112 2.665000 CCAAGAAGCAGCTCGGGA 59.335 61.111 0.00 0.00 0.00 5.14
1105 1154 4.767255 GGCGGCAGGAGACAGGTG 62.767 72.222 3.07 0.00 0.00 4.00
1129 1198 2.379459 GCCCCTCCTTCCTTCCTCC 61.379 68.421 0.00 0.00 0.00 4.30
1315 1398 1.040646 TTGGTCTGACTTGCTCGTCT 58.959 50.000 7.85 0.00 35.00 4.18
1390 1473 2.515901 AGGTGCGCCCTTCTTTGT 59.484 55.556 14.07 0.00 42.73 2.83
1442 1525 0.966179 ATTTCCGTCTTGTTTGGGGC 59.034 50.000 0.00 0.00 0.00 5.80
1443 1526 1.448922 TTTCCGTCTTGTTTGGGGCG 61.449 55.000 0.00 0.00 0.00 6.13
1447 1530 3.179339 TCTTGTTTGGGGCGGGGA 61.179 61.111 0.00 0.00 0.00 4.81
1448 1531 2.989253 CTTGTTTGGGGCGGGGAC 60.989 66.667 0.00 0.00 0.00 4.46
1449 1532 3.503839 TTGTTTGGGGCGGGGACT 61.504 61.111 0.00 0.00 0.00 3.85
1450 1533 2.994643 CTTGTTTGGGGCGGGGACTT 62.995 60.000 0.00 0.00 0.00 3.01
1452 1535 3.503839 TTTGGGGCGGGGACTTGT 61.504 61.111 0.00 0.00 0.00 3.16
1453 1536 2.154747 TTTGGGGCGGGGACTTGTA 61.155 57.895 0.00 0.00 0.00 2.41
1454 1537 1.502527 TTTGGGGCGGGGACTTGTAT 61.503 55.000 0.00 0.00 0.00 2.29
1455 1538 1.917336 TTGGGGCGGGGACTTGTATC 61.917 60.000 0.00 0.00 0.00 2.24
1456 1539 2.070650 GGGGCGGGGACTTGTATCT 61.071 63.158 0.00 0.00 0.00 1.98
1457 1540 1.632965 GGGGCGGGGACTTGTATCTT 61.633 60.000 0.00 0.00 0.00 2.40
1497 1593 2.288666 GCACATTTCTCGGGAATGCTA 58.711 47.619 13.60 0.00 34.21 3.49
1540 1639 2.592308 CCTTAGGGAGGGCTGCAC 59.408 66.667 0.50 0.00 42.26 4.57
1584 1683 8.401709 CCTTGCTCCAGATTTTAGTTTATCTTC 58.598 37.037 0.00 0.00 0.00 2.87
1615 1720 1.144503 AGATGATGGATGGGGACTTGC 59.855 52.381 0.00 0.00 0.00 4.01
1616 1721 0.179009 ATGATGGATGGGGACTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
1643 1748 1.785353 TTCCCCTTCCTTGTTCCGGG 61.785 60.000 0.00 0.00 34.62 5.73
1660 1765 1.772836 GGGCATTTCTCTGGAGCAAT 58.227 50.000 0.00 0.00 0.00 3.56
1661 1766 1.407979 GGGCATTTCTCTGGAGCAATG 59.592 52.381 15.13 15.13 42.36 2.82
1694 1799 2.369394 CCAGTATTGTCCTTTGCCCTC 58.631 52.381 0.00 0.00 0.00 4.30
1730 1835 2.726066 CGGCAGTTTTCTTCGCTTCATC 60.726 50.000 0.00 0.00 0.00 2.92
1825 1932 2.353011 CGCTCTTCCGGGTAGTTGTTAA 60.353 50.000 0.00 0.00 0.00 2.01
1942 2052 1.900351 CACTGCGGGAGATCAGGAA 59.100 57.895 2.65 0.00 34.76 3.36
1952 2062 3.775316 GGGAGATCAGGAAGTACCAGAAA 59.225 47.826 0.00 0.00 42.04 2.52
1988 2098 1.115467 TCCCGTTTGCACCATTTGTT 58.885 45.000 0.00 0.00 0.00 2.83
2150 2264 3.591254 GACTCCCCAAGCGCTCGTT 62.591 63.158 12.06 0.00 0.00 3.85
2281 2405 5.046376 TGGGGTAGATGCATGTATCATAGTG 60.046 44.000 23.43 0.00 0.00 2.74
2354 2478 3.744238 ATTGTTTTGGTGGCTGGTAAC 57.256 42.857 0.00 0.00 0.00 2.50
2355 2479 1.404843 TGTTTTGGTGGCTGGTAACC 58.595 50.000 0.00 0.00 36.96 2.85
2367 2491 3.491964 GGCTGGTAACCCAAAACTGAAAC 60.492 47.826 0.00 0.00 41.27 2.78
2407 2541 7.765695 ATGGTATCAATTGTCTTTTCTGTGT 57.234 32.000 5.13 0.00 0.00 3.72
2408 2542 6.969366 TGGTATCAATTGTCTTTTCTGTGTG 58.031 36.000 5.13 0.00 0.00 3.82
2409 2543 6.545666 TGGTATCAATTGTCTTTTCTGTGTGT 59.454 34.615 5.13 0.00 0.00 3.72
2410 2544 7.068103 TGGTATCAATTGTCTTTTCTGTGTGTT 59.932 33.333 5.13 0.00 0.00 3.32
2411 2545 7.920682 GGTATCAATTGTCTTTTCTGTGTGTTT 59.079 33.333 5.13 0.00 0.00 2.83
2412 2546 7.760131 ATCAATTGTCTTTTCTGTGTGTTTG 57.240 32.000 5.13 0.00 0.00 2.93
2413 2547 6.686630 TCAATTGTCTTTTCTGTGTGTTTGT 58.313 32.000 5.13 0.00 0.00 2.83
2414 2548 6.585702 TCAATTGTCTTTTCTGTGTGTTTGTG 59.414 34.615 5.13 0.00 0.00 3.33
2415 2549 3.832276 TGTCTTTTCTGTGTGTTTGTGC 58.168 40.909 0.00 0.00 0.00 4.57
2416 2550 3.254411 TGTCTTTTCTGTGTGTTTGTGCA 59.746 39.130 0.00 0.00 0.00 4.57
2417 2551 4.233789 GTCTTTTCTGTGTGTTTGTGCAA 58.766 39.130 0.00 0.00 0.00 4.08
2458 2599 7.977904 CAAGATATACAGTCTTGCAACATGAA 58.022 34.615 0.00 0.00 44.07 2.57
2459 2600 8.618677 CAAGATATACAGTCTTGCAACATGAAT 58.381 33.333 0.00 0.00 44.07 2.57
2460 2601 9.836864 AAGATATACAGTCTTGCAACATGAATA 57.163 29.630 0.00 0.00 34.77 1.75
2461 2602 9.265901 AGATATACAGTCTTGCAACATGAATAC 57.734 33.333 0.00 0.00 0.00 1.89
2462 2603 8.962884 ATATACAGTCTTGCAACATGAATACA 57.037 30.769 0.00 0.00 0.00 2.29
2463 2604 7.870509 ATACAGTCTTGCAACATGAATACAT 57.129 32.000 0.00 0.00 37.19 2.29
2504 2645 9.003658 ACTCAAAACTGAACTATTGGTTAGATG 57.996 33.333 0.00 0.00 38.41 2.90
2509 2650 7.136822 ACTGAACTATTGGTTAGATGCCATA 57.863 36.000 0.00 0.00 38.41 2.74
2653 2803 7.334421 ACGCCAAATGATTATGTCTATATCCAC 59.666 37.037 0.00 0.00 0.00 4.02
2671 2821 3.118408 TCCACTACATGCTTATGTGTCCC 60.118 47.826 3.33 0.00 36.08 4.46
2693 2843 4.586001 CCAACCCCCAAATGATTATCTCTG 59.414 45.833 0.00 0.00 0.00 3.35
2695 2845 5.472301 ACCCCCAAATGATTATCTCTGTT 57.528 39.130 0.00 0.00 0.00 3.16
2753 2903 8.998989 CAGTCAAGTTTATTGTGCATTTATACG 58.001 33.333 0.00 0.00 0.00 3.06
2874 3049 5.012664 TCAGTGTGGCCTAAGAAATGAGTTA 59.987 40.000 3.32 0.00 0.00 2.24
2916 3091 5.343058 CCTGTGTATTTGCTTTGAATTGACG 59.657 40.000 0.00 0.00 0.00 4.35
3051 3226 6.867662 TCTCACTGAATGAAAACTTCCTTC 57.132 37.500 0.00 0.00 36.69 3.46
3053 3228 5.445069 TCACTGAATGAAAACTTCCTTCCA 58.555 37.500 3.10 0.00 34.60 3.53
3176 3356 9.020813 GTTGTTTCAAGGTTCAAGAATTCTAAC 57.979 33.333 8.75 10.26 0.00 2.34
3319 5339 5.264395 CAGGAAATTCAGGGTTGATTACCT 58.736 41.667 0.00 0.00 46.86 3.08
3320 5340 6.423182 CAGGAAATTCAGGGTTGATTACCTA 58.577 40.000 0.00 0.00 46.86 3.08
3321 5341 7.062957 CAGGAAATTCAGGGTTGATTACCTAT 58.937 38.462 0.00 0.00 46.86 2.57
3322 5342 7.561356 CAGGAAATTCAGGGTTGATTACCTATT 59.439 37.037 0.00 0.00 46.86 1.73
3323 5343 8.122481 AGGAAATTCAGGGTTGATTACCTATTT 58.878 33.333 0.00 0.00 46.86 1.40
3324 5344 9.416284 GGAAATTCAGGGTTGATTACCTATTTA 57.584 33.333 0.00 0.00 46.86 1.40
3329 5349 9.627123 TTCAGGGTTGATTACCTATTTATTCAG 57.373 33.333 0.00 0.00 46.86 3.02
3330 5350 8.217799 TCAGGGTTGATTACCTATTTATTCAGG 58.782 37.037 0.00 0.00 46.86 3.86
3331 5351 7.448469 CAGGGTTGATTACCTATTTATTCAGGG 59.552 40.741 0.00 0.00 46.86 4.45
3332 5352 7.130442 AGGGTTGATTACCTATTTATTCAGGGT 59.870 37.037 0.00 0.00 46.86 4.34
3333 5353 7.783119 GGGTTGATTACCTATTTATTCAGGGTT 59.217 37.037 0.00 0.00 46.86 4.11
3334 5354 8.630037 GGTTGATTACCTATTTATTCAGGGTTG 58.370 37.037 0.00 0.00 44.10 3.77
3335 5355 9.403583 GTTGATTACCTATTTATTCAGGGTTGA 57.596 33.333 0.00 0.00 36.15 3.18
3342 5362 9.232882 ACCTATTTATTCAGGGTTGATTACCTA 57.767 33.333 0.00 0.00 46.86 3.08
3436 5458 9.810545 TTTCCTTATAAAACTTGGAAACTGTTG 57.189 29.630 10.35 0.00 40.52 3.33
3437 5459 8.754991 TCCTTATAAAACTTGGAAACTGTTGA 57.245 30.769 0.00 0.00 0.00 3.18
3438 5460 8.846211 TCCTTATAAAACTTGGAAACTGTTGAG 58.154 33.333 0.00 0.00 0.00 3.02
3439 5461 8.846211 CCTTATAAAACTTGGAAACTGTTGAGA 58.154 33.333 0.00 0.00 0.00 3.27
3494 5591 5.418840 ACAAATAAAACGGATGCTCCTGAAT 59.581 36.000 0.00 0.00 33.30 2.57
3635 5748 4.174762 GGTGATACTTCTGGAAGACGTTC 58.825 47.826 16.06 7.96 43.62 3.95
3652 5765 2.050144 GTTCTCTGCATCATAGGGGGA 58.950 52.381 0.00 0.00 0.00 4.81
3828 5958 3.433306 TGGTTGGGATCATTCGACTTT 57.567 42.857 0.00 0.00 0.00 2.66
3830 5960 3.505680 TGGTTGGGATCATTCGACTTTTG 59.494 43.478 0.00 0.00 0.00 2.44
3862 5992 6.025280 GCATTGTTCCATTTGAATTGATTGC 58.975 36.000 0.00 0.00 34.90 3.56
3871 6001 6.448852 CATTTGAATTGATTGCGGATATGGA 58.551 36.000 0.00 0.00 0.00 3.41
3897 6027 3.575965 AAATGACTTGGAATCGGTTGC 57.424 42.857 0.00 0.00 0.00 4.17
3964 6094 4.332268 AGCGTTTTCATGCATGTTTTGTTT 59.668 33.333 25.43 6.37 37.39 2.83
3965 6095 5.521735 AGCGTTTTCATGCATGTTTTGTTTA 59.478 32.000 25.43 1.24 37.39 2.01
3966 6096 5.615181 GCGTTTTCATGCATGTTTTGTTTAC 59.385 36.000 25.43 12.15 34.70 2.01
3967 6097 6.509358 GCGTTTTCATGCATGTTTTGTTTACT 60.509 34.615 25.43 0.00 34.70 2.24
3968 6098 7.397970 CGTTTTCATGCATGTTTTGTTTACTT 58.602 30.769 25.43 0.00 0.00 2.24
3969 6099 7.578736 CGTTTTCATGCATGTTTTGTTTACTTC 59.421 33.333 25.43 4.13 0.00 3.01
3970 6100 8.386606 GTTTTCATGCATGTTTTGTTTACTTCA 58.613 29.630 25.43 0.00 0.00 3.02
3971 6101 8.484641 TTTCATGCATGTTTTGTTTACTTCAA 57.515 26.923 25.43 5.18 0.00 2.69
3972 6102 7.462109 TCATGCATGTTTTGTTTACTTCAAC 57.538 32.000 25.43 0.00 0.00 3.18
3973 6103 7.264221 TCATGCATGTTTTGTTTACTTCAACT 58.736 30.769 25.43 0.00 0.00 3.16
3974 6104 7.763528 TCATGCATGTTTTGTTTACTTCAACTT 59.236 29.630 25.43 0.00 0.00 2.66
3975 6105 7.518731 TGCATGTTTTGTTTACTTCAACTTC 57.481 32.000 0.00 0.00 0.00 3.01
3976 6106 7.319646 TGCATGTTTTGTTTACTTCAACTTCT 58.680 30.769 0.00 0.00 0.00 2.85
3977 6107 7.487829 TGCATGTTTTGTTTACTTCAACTTCTC 59.512 33.333 0.00 0.00 0.00 2.87
3978 6108 7.487829 GCATGTTTTGTTTACTTCAACTTCTCA 59.512 33.333 0.00 0.00 0.00 3.27
3979 6109 9.352784 CATGTTTTGTTTACTTCAACTTCTCAA 57.647 29.630 0.00 0.00 0.00 3.02
3980 6110 9.921637 ATGTTTTGTTTACTTCAACTTCTCAAA 57.078 25.926 0.00 0.00 0.00 2.69
3981 6111 9.405587 TGTTTTGTTTACTTCAACTTCTCAAAG 57.594 29.630 0.00 0.00 38.54 2.77
3982 6112 9.620660 GTTTTGTTTACTTCAACTTCTCAAAGA 57.379 29.630 0.00 0.00 36.30 2.52
4017 6148 4.604114 CTGTGATCAGCGCCTTCA 57.396 55.556 2.29 1.39 34.79 3.02
4018 6149 2.381109 CTGTGATCAGCGCCTTCAG 58.619 57.895 2.29 0.83 34.79 3.02
4023 6154 1.285578 GATCAGCGCCTTCAGAGTTC 58.714 55.000 2.29 0.00 0.00 3.01
4024 6155 0.901124 ATCAGCGCCTTCAGAGTTCT 59.099 50.000 2.29 0.00 0.00 3.01
4025 6156 1.545841 TCAGCGCCTTCAGAGTTCTA 58.454 50.000 2.29 0.00 0.00 2.10
4026 6157 1.893137 TCAGCGCCTTCAGAGTTCTAA 59.107 47.619 2.29 0.00 0.00 2.10
4027 6158 2.497675 TCAGCGCCTTCAGAGTTCTAAT 59.502 45.455 2.29 0.00 0.00 1.73
4028 6159 2.606725 CAGCGCCTTCAGAGTTCTAATG 59.393 50.000 2.29 0.00 0.00 1.90
4029 6160 2.497675 AGCGCCTTCAGAGTTCTAATGA 59.502 45.455 2.29 0.00 0.00 2.57
4030 6161 3.133721 AGCGCCTTCAGAGTTCTAATGAT 59.866 43.478 2.29 0.00 0.00 2.45
4031 6162 3.247173 GCGCCTTCAGAGTTCTAATGATG 59.753 47.826 0.00 0.00 0.00 3.07
4032 6163 3.247173 CGCCTTCAGAGTTCTAATGATGC 59.753 47.826 0.00 0.00 0.00 3.91
4033 6164 4.194640 GCCTTCAGAGTTCTAATGATGCA 58.805 43.478 0.00 0.00 0.00 3.96
4034 6165 4.820716 GCCTTCAGAGTTCTAATGATGCAT 59.179 41.667 0.00 0.00 0.00 3.96
4035 6166 5.298777 GCCTTCAGAGTTCTAATGATGCATT 59.701 40.000 0.00 0.00 37.80 3.56
4036 6167 6.183360 GCCTTCAGAGTTCTAATGATGCATTT 60.183 38.462 0.00 0.00 35.54 2.32
4037 6168 7.630082 GCCTTCAGAGTTCTAATGATGCATTTT 60.630 37.037 0.00 0.52 35.54 1.82
4038 6169 7.914346 CCTTCAGAGTTCTAATGATGCATTTTC 59.086 37.037 0.00 0.00 35.54 2.29
4039 6170 8.571461 TTCAGAGTTCTAATGATGCATTTTCT 57.429 30.769 0.00 0.00 35.54 2.52
4040 6171 8.571461 TCAGAGTTCTAATGATGCATTTTCTT 57.429 30.769 0.00 0.00 35.54 2.52
4041 6172 9.017509 TCAGAGTTCTAATGATGCATTTTCTTT 57.982 29.630 0.00 0.00 35.54 2.52
4042 6173 9.073368 CAGAGTTCTAATGATGCATTTTCTTTG 57.927 33.333 0.00 0.00 35.54 2.77
4043 6174 8.800332 AGAGTTCTAATGATGCATTTTCTTTGT 58.200 29.630 0.00 0.00 35.54 2.83
4044 6175 8.752766 AGTTCTAATGATGCATTTTCTTTGTG 57.247 30.769 0.00 0.00 35.54 3.33
4045 6176 8.579006 AGTTCTAATGATGCATTTTCTTTGTGA 58.421 29.630 0.00 0.00 35.54 3.58
4046 6177 9.195411 GTTCTAATGATGCATTTTCTTTGTGAA 57.805 29.630 0.00 1.66 35.54 3.18
4047 6178 8.746922 TCTAATGATGCATTTTCTTTGTGAAC 57.253 30.769 0.00 0.00 35.54 3.18
4048 6179 8.579006 TCTAATGATGCATTTTCTTTGTGAACT 58.421 29.630 0.00 0.00 35.54 3.01
4049 6180 7.416154 AATGATGCATTTTCTTTGTGAACTG 57.584 32.000 0.00 0.00 33.88 3.16
4050 6181 4.746115 TGATGCATTTTCTTTGTGAACTGC 59.254 37.500 0.00 0.00 40.84 4.40
4051 6182 4.389890 TGCATTTTCTTTGTGAACTGCT 57.610 36.364 11.03 0.00 40.96 4.24
4052 6183 4.114073 TGCATTTTCTTTGTGAACTGCTG 58.886 39.130 11.03 0.00 40.96 4.41
4053 6184 4.114794 GCATTTTCTTTGTGAACTGCTGT 58.885 39.130 0.00 0.00 39.02 4.40
4054 6185 4.026310 GCATTTTCTTTGTGAACTGCTGTG 60.026 41.667 0.00 0.00 39.02 3.66
4055 6186 5.342433 CATTTTCTTTGTGAACTGCTGTGA 58.658 37.500 0.00 0.00 33.88 3.58
4056 6187 5.581126 TTTTCTTTGTGAACTGCTGTGAT 57.419 34.783 0.00 0.00 33.88 3.06
4057 6188 4.818534 TTCTTTGTGAACTGCTGTGATC 57.181 40.909 0.00 0.00 0.00 2.92
4058 6189 3.807553 TCTTTGTGAACTGCTGTGATCA 58.192 40.909 0.00 0.00 0.00 2.92
4059 6190 3.811497 TCTTTGTGAACTGCTGTGATCAG 59.189 43.478 0.00 0.00 43.87 2.90
4060 6191 3.473923 TTGTGAACTGCTGTGATCAGA 57.526 42.857 0.00 0.00 43.76 3.27
4061 6192 3.036075 TGTGAACTGCTGTGATCAGAG 57.964 47.619 15.36 15.36 43.76 3.35
4062 6193 1.731160 GTGAACTGCTGTGATCAGAGC 59.269 52.381 32.12 32.12 46.64 4.09
4084 6215 3.198068 GCCTTCGCAGTTCTAATGATGA 58.802 45.455 0.00 0.00 34.03 2.92
4085 6216 3.812053 GCCTTCGCAGTTCTAATGATGAT 59.188 43.478 0.00 0.00 34.03 2.45
4086 6217 4.084118 GCCTTCGCAGTTCTAATGATGATC 60.084 45.833 0.00 0.00 34.03 2.92
4087 6218 5.052481 CCTTCGCAGTTCTAATGATGATCA 58.948 41.667 0.00 0.00 0.00 2.92
4107 6350 6.864685 TGATCAAAACTTCATGCTGATTTCAC 59.135 34.615 0.00 0.00 0.00 3.18
4132 6386 0.804989 GGCTGTCAAATTCTCACCCG 59.195 55.000 0.00 0.00 0.00 5.28
4136 6390 2.939103 CTGTCAAATTCTCACCCGGATC 59.061 50.000 0.73 0.00 0.00 3.36
4142 6398 0.614697 TTCTCACCCGGATCTCAGCA 60.615 55.000 0.73 0.00 0.00 4.41
4154 6410 4.579869 GGATCTCAGCAAAAACAGAGGTA 58.420 43.478 0.00 0.00 0.00 3.08
4156 6412 5.295540 GGATCTCAGCAAAAACAGAGGTATC 59.704 44.000 0.00 0.00 0.00 2.24
4157 6413 4.245660 TCTCAGCAAAAACAGAGGTATCG 58.754 43.478 0.00 0.00 0.00 2.92
4159 6415 2.084546 AGCAAAAACAGAGGTATCGGC 58.915 47.619 0.00 0.00 0.00 5.54
4160 6416 1.202031 GCAAAAACAGAGGTATCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
4161 6417 1.396996 CAAAAACAGAGGTATCGGCGG 59.603 52.381 7.21 0.00 0.00 6.13
4162 6418 0.899720 AAAACAGAGGTATCGGCGGA 59.100 50.000 7.21 0.00 0.00 5.54
4163 6419 0.175073 AAACAGAGGTATCGGCGGAC 59.825 55.000 7.21 5.61 0.00 4.79
4164 6420 0.968901 AACAGAGGTATCGGCGGACA 60.969 55.000 7.21 0.00 0.00 4.02
4165 6421 0.755698 ACAGAGGTATCGGCGGACAT 60.756 55.000 7.21 2.95 0.00 3.06
4166 6422 1.244816 CAGAGGTATCGGCGGACATA 58.755 55.000 7.21 0.00 0.00 2.29
4167 6423 1.068472 CAGAGGTATCGGCGGACATAC 60.068 57.143 7.21 7.88 0.00 2.39
4168 6424 0.109873 GAGGTATCGGCGGACATACG 60.110 60.000 7.21 0.00 0.00 3.06
4181 6437 0.174389 ACATACGCTCTGTCTGGCAG 59.826 55.000 8.58 8.58 46.34 4.85
4232 6490 1.677576 CATGGCCACATACATGACCAC 59.322 52.381 8.16 0.00 45.55 4.16
4233 6491 0.034574 TGGCCACATACATGACCACC 60.035 55.000 0.00 0.00 0.00 4.61
4284 6542 2.187958 CCATGTACTCCCTCTGTTCCA 58.812 52.381 0.00 0.00 0.00 3.53
4290 6548 6.049955 TGTACTCCCTCTGTTCCAAAATAG 57.950 41.667 0.00 0.00 0.00 1.73
4292 6550 6.443849 TGTACTCCCTCTGTTCCAAAATAGAT 59.556 38.462 0.00 0.00 32.88 1.98
4294 6552 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
4296 6554 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
4297 6555 4.884164 CCTCTGTTCCAAAATAGATGACCC 59.116 45.833 0.00 0.00 32.88 4.46
4298 6556 5.500234 CTCTGTTCCAAAATAGATGACCCA 58.500 41.667 0.00 0.00 32.88 4.51
4300 6558 5.710099 TCTGTTCCAAAATAGATGACCCAAC 59.290 40.000 0.00 0.00 28.72 3.77
4301 6559 5.640147 TGTTCCAAAATAGATGACCCAACT 58.360 37.500 0.00 0.00 0.00 3.16
4302 6560 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
4303 6561 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
4304 6562 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4305 6563 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4307 6565 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4308 6566 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4309 6567 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4310 6568 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4316 6574 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
4317 6575 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
4319 6577 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
4404 10230 3.439857 ACCTGGCAGATTTACACACAT 57.560 42.857 17.94 0.00 0.00 3.21
4412 10238 5.402270 GGCAGATTTACACACATTGACAAAC 59.598 40.000 0.00 0.00 0.00 2.93
4413 10239 6.208644 GCAGATTTACACACATTGACAAACT 58.791 36.000 0.00 0.00 0.00 2.66
4416 10242 7.588854 CAGATTTACACACATTGACAAACTCTG 59.411 37.037 0.00 0.00 0.00 3.35
4417 10243 6.993786 TTTACACACATTGACAAACTCTGA 57.006 33.333 0.00 0.00 0.00 3.27
4418 10244 6.993786 TTACACACATTGACAAACTCTGAA 57.006 33.333 0.00 0.00 0.00 3.02
4419 10245 5.235305 ACACACATTGACAAACTCTGAAC 57.765 39.130 0.00 0.00 0.00 3.18
4420 10246 4.096382 ACACACATTGACAAACTCTGAACC 59.904 41.667 0.00 0.00 0.00 3.62
4421 10247 4.096231 CACACATTGACAAACTCTGAACCA 59.904 41.667 0.00 0.00 0.00 3.67
4422 10248 4.096382 ACACATTGACAAACTCTGAACCAC 59.904 41.667 0.00 0.00 0.00 4.16
4423 10249 3.632145 ACATTGACAAACTCTGAACCACC 59.368 43.478 0.00 0.00 0.00 4.61
4424 10250 1.948104 TGACAAACTCTGAACCACCG 58.052 50.000 0.00 0.00 0.00 4.94
4425 10251 1.226746 GACAAACTCTGAACCACCGG 58.773 55.000 0.00 0.00 0.00 5.28
4426 10252 0.179029 ACAAACTCTGAACCACCGGG 60.179 55.000 6.32 0.00 41.29 5.73
4491 10333 2.272471 GGGCTGGGACAAGCTACC 59.728 66.667 0.00 0.00 38.70 3.18
4493 10335 1.378762 GGCTGGGACAAGCTACCAA 59.621 57.895 0.00 0.00 38.70 3.67
4494 10336 0.960861 GGCTGGGACAAGCTACCAAC 60.961 60.000 0.00 0.57 38.70 3.77
4495 10337 0.036875 GCTGGGACAAGCTACCAACT 59.963 55.000 6.80 0.00 38.70 3.16
4496 10338 1.813513 CTGGGACAAGCTACCAACTG 58.186 55.000 6.80 0.00 38.70 3.16
4497 10339 0.250727 TGGGACAAGCTACCAACTGC 60.251 55.000 6.80 0.00 31.92 4.40
4499 10341 0.960861 GGACAAGCTACCAACTGCCC 60.961 60.000 0.00 0.00 0.00 5.36
4500 10342 0.960861 GACAAGCTACCAACTGCCCC 60.961 60.000 0.00 0.00 0.00 5.80
4501 10343 1.380302 CAAGCTACCAACTGCCCCT 59.620 57.895 0.00 0.00 0.00 4.79
4503 10345 1.133809 AAGCTACCAACTGCCCCTCA 61.134 55.000 0.00 0.00 0.00 3.86
4609 10506 7.835682 TCATCATGTCCAACTCCTGAAATTATT 59.164 33.333 0.00 0.00 0.00 1.40
4610 10507 7.395190 TCATGTCCAACTCCTGAAATTATTG 57.605 36.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.297426 CGGTAATCACATGCTAATCTACTAGAA 58.703 37.037 0.00 0.00 0.00 2.10
12 13 7.094334 CCGGTAATCACATGCTAATCTACTAGA 60.094 40.741 0.00 0.00 0.00 2.43
13 14 7.030165 CCGGTAATCACATGCTAATCTACTAG 58.970 42.308 0.00 0.00 0.00 2.57
14 15 6.571731 GCCGGTAATCACATGCTAATCTACTA 60.572 42.308 1.90 0.00 0.00 1.82
15 16 5.784177 CCGGTAATCACATGCTAATCTACT 58.216 41.667 0.00 0.00 0.00 2.57
16 17 4.389077 GCCGGTAATCACATGCTAATCTAC 59.611 45.833 1.90 0.00 0.00 2.59
17 18 4.562757 GGCCGGTAATCACATGCTAATCTA 60.563 45.833 1.90 0.00 0.00 1.98
18 19 3.403038 GCCGGTAATCACATGCTAATCT 58.597 45.455 1.90 0.00 0.00 2.40
19 20 2.484264 GGCCGGTAATCACATGCTAATC 59.516 50.000 1.90 0.00 0.00 1.75
20 21 2.504367 GGCCGGTAATCACATGCTAAT 58.496 47.619 1.90 0.00 0.00 1.73
21 22 1.476110 GGGCCGGTAATCACATGCTAA 60.476 52.381 1.90 0.00 0.00 3.09
22 23 0.107831 GGGCCGGTAATCACATGCTA 59.892 55.000 1.90 0.00 0.00 3.49
23 24 1.152963 GGGCCGGTAATCACATGCT 60.153 57.895 1.90 0.00 0.00 3.79
24 25 0.823356 ATGGGCCGGTAATCACATGC 60.823 55.000 1.90 0.00 0.00 4.06
25 26 2.559698 TATGGGCCGGTAATCACATG 57.440 50.000 1.90 0.00 0.00 3.21
26 27 3.806949 AATATGGGCCGGTAATCACAT 57.193 42.857 1.90 0.81 0.00 3.21
27 28 4.708576 TTAATATGGGCCGGTAATCACA 57.291 40.909 1.90 0.00 0.00 3.58
28 29 5.007682 ACATTAATATGGGCCGGTAATCAC 58.992 41.667 1.90 0.00 36.01 3.06
29 30 5.007034 CACATTAATATGGGCCGGTAATCA 58.993 41.667 1.90 0.00 36.01 2.57
30 31 4.398044 CCACATTAATATGGGCCGGTAATC 59.602 45.833 4.72 0.00 33.61 1.75
31 32 4.202631 ACCACATTAATATGGGCCGGTAAT 60.203 41.667 17.00 0.00 40.59 1.89
32 33 3.138653 ACCACATTAATATGGGCCGGTAA 59.861 43.478 17.00 0.00 40.59 2.85
33 34 2.712087 ACCACATTAATATGGGCCGGTA 59.288 45.455 17.00 0.00 40.59 4.02
34 35 1.497286 ACCACATTAATATGGGCCGGT 59.503 47.619 17.00 0.00 40.59 5.28
35 36 2.286365 ACCACATTAATATGGGCCGG 57.714 50.000 17.00 0.00 40.59 6.13
36 37 3.187637 CGTAACCACATTAATATGGGCCG 59.812 47.826 17.00 11.19 40.59 6.13
37 38 4.139038 ACGTAACCACATTAATATGGGCC 58.861 43.478 17.00 0.00 40.59 5.80
38 39 6.864360 TTACGTAACCACATTAATATGGGC 57.136 37.500 17.00 6.04 40.59 5.36
74 75 8.927675 TGGTAAGTCAATAAGTGTTACCAAAT 57.072 30.769 9.32 0.00 46.09 2.32
77 78 8.749026 TTTTGGTAAGTCAATAAGTGTTACCA 57.251 30.769 7.94 7.94 46.94 3.25
78 79 9.059260 TCTTTTGGTAAGTCAATAAGTGTTACC 57.941 33.333 0.00 0.00 42.01 2.85
117 118 8.962679 CCTGCCTATTGTTTACTTACCAAATAA 58.037 33.333 0.00 0.00 0.00 1.40
118 119 7.558444 CCCTGCCTATTGTTTACTTACCAAATA 59.442 37.037 0.00 0.00 0.00 1.40
119 120 6.379988 CCCTGCCTATTGTTTACTTACCAAAT 59.620 38.462 0.00 0.00 0.00 2.32
120 121 5.712917 CCCTGCCTATTGTTTACTTACCAAA 59.287 40.000 0.00 0.00 0.00 3.28
121 122 5.222171 ACCCTGCCTATTGTTTACTTACCAA 60.222 40.000 0.00 0.00 0.00 3.67
122 123 4.290196 ACCCTGCCTATTGTTTACTTACCA 59.710 41.667 0.00 0.00 0.00 3.25
123 124 4.851843 ACCCTGCCTATTGTTTACTTACC 58.148 43.478 0.00 0.00 0.00 2.85
124 125 5.526479 GCTACCCTGCCTATTGTTTACTTAC 59.474 44.000 0.00 0.00 0.00 2.34
125 126 5.677567 GCTACCCTGCCTATTGTTTACTTA 58.322 41.667 0.00 0.00 0.00 2.24
126 127 4.524053 GCTACCCTGCCTATTGTTTACTT 58.476 43.478 0.00 0.00 0.00 2.24
127 128 3.431766 CGCTACCCTGCCTATTGTTTACT 60.432 47.826 0.00 0.00 0.00 2.24
128 129 2.870411 CGCTACCCTGCCTATTGTTTAC 59.130 50.000 0.00 0.00 0.00 2.01
129 130 2.767394 TCGCTACCCTGCCTATTGTTTA 59.233 45.455 0.00 0.00 0.00 2.01
130 131 1.557832 TCGCTACCCTGCCTATTGTTT 59.442 47.619 0.00 0.00 0.00 2.83
131 132 1.139058 CTCGCTACCCTGCCTATTGTT 59.861 52.381 0.00 0.00 0.00 2.83
132 133 0.753262 CTCGCTACCCTGCCTATTGT 59.247 55.000 0.00 0.00 0.00 2.71
133 134 0.034059 CCTCGCTACCCTGCCTATTG 59.966 60.000 0.00 0.00 0.00 1.90
134 135 0.105658 TCCTCGCTACCCTGCCTATT 60.106 55.000 0.00 0.00 0.00 1.73
135 136 0.105658 TTCCTCGCTACCCTGCCTAT 60.106 55.000 0.00 0.00 0.00 2.57
136 137 0.324923 TTTCCTCGCTACCCTGCCTA 60.325 55.000 0.00 0.00 0.00 3.93
137 138 0.983378 ATTTCCTCGCTACCCTGCCT 60.983 55.000 0.00 0.00 0.00 4.75
138 139 0.756903 TATTTCCTCGCTACCCTGCC 59.243 55.000 0.00 0.00 0.00 4.85
139 140 2.614829 TTATTTCCTCGCTACCCTGC 57.385 50.000 0.00 0.00 0.00 4.85
140 141 7.562454 TTAATTTTATTTCCTCGCTACCCTG 57.438 36.000 0.00 0.00 0.00 4.45
141 142 8.584063 TTTTAATTTTATTTCCTCGCTACCCT 57.416 30.769 0.00 0.00 0.00 4.34
168 169 9.845214 ACCTATATTCCCTACATTTGTCTATCT 57.155 33.333 0.00 0.00 0.00 1.98
172 173 8.881262 CCTTACCTATATTCCCTACATTTGTCT 58.119 37.037 0.00 0.00 0.00 3.41
173 174 8.657712 ACCTTACCTATATTCCCTACATTTGTC 58.342 37.037 0.00 0.00 0.00 3.18
174 175 8.577164 ACCTTACCTATATTCCCTACATTTGT 57.423 34.615 0.00 0.00 0.00 2.83
175 176 9.503399 GAACCTTACCTATATTCCCTACATTTG 57.497 37.037 0.00 0.00 0.00 2.32
176 177 8.373220 CGAACCTTACCTATATTCCCTACATTT 58.627 37.037 0.00 0.00 0.00 2.32
177 178 7.731688 TCGAACCTTACCTATATTCCCTACATT 59.268 37.037 0.00 0.00 0.00 2.71
178 179 7.178097 GTCGAACCTTACCTATATTCCCTACAT 59.822 40.741 0.00 0.00 0.00 2.29
179 180 6.491403 GTCGAACCTTACCTATATTCCCTACA 59.509 42.308 0.00 0.00 0.00 2.74
180 181 6.348868 CGTCGAACCTTACCTATATTCCCTAC 60.349 46.154 0.00 0.00 0.00 3.18
181 182 5.707298 CGTCGAACCTTACCTATATTCCCTA 59.293 44.000 0.00 0.00 0.00 3.53
182 183 4.522022 CGTCGAACCTTACCTATATTCCCT 59.478 45.833 0.00 0.00 0.00 4.20
183 184 4.520492 TCGTCGAACCTTACCTATATTCCC 59.480 45.833 0.00 0.00 0.00 3.97
184 185 5.695851 TCGTCGAACCTTACCTATATTCC 57.304 43.478 0.00 0.00 0.00 3.01
185 186 9.928236 GTATATCGTCGAACCTTACCTATATTC 57.072 37.037 0.00 0.00 0.00 1.75
186 187 9.678260 AGTATATCGTCGAACCTTACCTATATT 57.322 33.333 0.00 0.00 0.00 1.28
187 188 9.678260 AAGTATATCGTCGAACCTTACCTATAT 57.322 33.333 0.00 0.00 0.00 0.86
188 189 8.939929 CAAGTATATCGTCGAACCTTACCTATA 58.060 37.037 0.00 0.00 0.00 1.31
189 190 7.446625 ACAAGTATATCGTCGAACCTTACCTAT 59.553 37.037 0.00 0.00 0.00 2.57
190 191 6.767902 ACAAGTATATCGTCGAACCTTACCTA 59.232 38.462 0.00 0.00 0.00 3.08
191 192 5.591877 ACAAGTATATCGTCGAACCTTACCT 59.408 40.000 0.00 0.00 0.00 3.08
192 193 5.825507 ACAAGTATATCGTCGAACCTTACC 58.174 41.667 0.00 0.00 0.00 2.85
193 194 7.476802 CGATACAAGTATATCGTCGAACCTTAC 59.523 40.741 0.00 0.00 45.74 2.34
194 195 7.513132 CGATACAAGTATATCGTCGAACCTTA 58.487 38.462 0.00 0.00 45.74 2.69
195 196 6.369005 CGATACAAGTATATCGTCGAACCTT 58.631 40.000 0.00 0.00 45.74 3.50
196 197 5.924786 CGATACAAGTATATCGTCGAACCT 58.075 41.667 0.00 0.00 45.74 3.50
219 220 7.439056 TCCGTCCCATAATATAAGAACGTTTTC 59.561 37.037 0.46 0.00 0.00 2.29
220 221 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
221 222 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
222 223 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
223 224 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
224 225 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
225 226 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
226 227 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
227 228 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
228 229 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
229 230 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
230 231 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
231 232 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
232 233 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
233 234 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
234 235 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
235 236 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
236 237 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
237 238 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
238 239 1.201424 ATTTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
239 240 4.684484 AATATTTGTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
240 241 6.997239 AAAAATATTTGTACTCCCTCCGTC 57.003 37.500 0.39 0.00 0.00 4.79
336 344 1.152383 GGAATAGTGCCTCGCGTTCC 61.152 60.000 5.77 5.47 0.00 3.62
351 359 2.163815 CTCGTCTAGTGACCGTTGGAAT 59.836 50.000 0.00 0.00 39.94 3.01
372 382 1.231958 TTGCCACATTTCGTCCCGAC 61.232 55.000 0.00 0.00 34.89 4.79
379 389 1.987770 GATGCAACTTGCCACATTTCG 59.012 47.619 11.29 0.00 44.23 3.46
825 852 6.551601 AGGAGCGGTTACTACTACTACTACTA 59.448 42.308 0.00 0.00 0.00 1.82
826 853 5.365314 AGGAGCGGTTACTACTACTACTACT 59.635 44.000 0.00 0.00 0.00 2.57
827 854 5.606505 AGGAGCGGTTACTACTACTACTAC 58.393 45.833 0.00 0.00 0.00 2.73
828 855 5.221541 GGAGGAGCGGTTACTACTACTACTA 60.222 48.000 0.00 0.00 28.02 1.82
934 983 1.007842 GAGGAGGAGGGAGGAGTTTCT 59.992 57.143 0.00 0.00 0.00 2.52
1043 1092 2.359107 CGAGCTGCTTCTTGGGCA 60.359 61.111 2.53 0.00 38.10 5.36
1133 1202 2.956964 GGCGTTCGCTCGAGATGG 60.957 66.667 18.75 4.29 0.00 3.51
1135 1204 3.736482 GACGGCGTTCGCTCGAGAT 62.736 63.158 18.75 10.46 43.89 2.75
1259 1340 2.685897 CGAAACAAAAGGAAGTGACCCA 59.314 45.455 0.00 0.00 0.00 4.51
1265 1346 5.638596 AACAAGACGAAACAAAAGGAAGT 57.361 34.783 0.00 0.00 0.00 3.01
1315 1398 0.389817 CTGCATTCCGTCGAACAGGA 60.390 55.000 0.00 1.86 34.19 3.86
1380 1463 1.681264 ACCGAAAAGCACAAAGAAGGG 59.319 47.619 0.00 0.00 0.00 3.95
1390 1473 1.360911 GGCGGAAAACCGAAAAGCA 59.639 52.632 12.85 0.00 34.88 3.91
1422 1505 2.164338 GCCCCAAACAAGACGGAAATA 58.836 47.619 0.00 0.00 0.00 1.40
1442 1525 1.413077 GGGAGAAGATACAAGTCCCCG 59.587 57.143 0.00 0.00 41.09 5.73
1497 1593 3.120086 AACCGCAACTGCTCCTGGT 62.120 57.895 0.00 0.00 39.32 4.00
1506 1602 2.200337 GGGCCAAAGAACCGCAACT 61.200 57.895 4.39 0.00 0.00 3.16
1538 1637 0.240945 AAGCGAAGAAATTGCCGGTG 59.759 50.000 1.90 0.00 39.48 4.94
1540 1639 0.179163 GGAAGCGAAGAAATTGCCGG 60.179 55.000 0.00 0.00 39.48 6.13
1546 1645 2.087646 GGAGCAAGGAAGCGAAGAAAT 58.912 47.619 0.00 0.00 40.15 2.17
1584 1683 5.236282 CCATCCATCATCTTGCTACTGTAG 58.764 45.833 10.48 10.48 0.00 2.74
1615 1720 3.383505 ACAAGGAAGGGGAAAGAAAAACG 59.616 43.478 0.00 0.00 0.00 3.60
1616 1721 5.353394 AACAAGGAAGGGGAAAGAAAAAC 57.647 39.130 0.00 0.00 0.00 2.43
1660 1765 6.127479 GGACAATACTGGGAAATGCATAAACA 60.127 38.462 0.00 0.00 0.00 2.83
1661 1766 6.096846 AGGACAATACTGGGAAATGCATAAAC 59.903 38.462 0.00 0.00 0.00 2.01
1694 1799 2.525381 CCGATCCCCTCCCCTCTG 60.525 72.222 0.00 0.00 0.00 3.35
1704 1809 0.727398 CGAAGAAAACTGCCGATCCC 59.273 55.000 0.00 0.00 0.00 3.85
1730 1835 7.611213 ACAAGATAAACTAAAATCTGGACCG 57.389 36.000 0.00 0.00 32.79 4.79
1825 1932 2.293677 ACGAGTCAGTCACAGACGAAAT 59.706 45.455 0.00 0.00 40.84 2.17
1942 2052 2.444421 AGTCGACCGATTTCTGGTACT 58.556 47.619 13.01 0.00 40.63 2.73
1952 2062 1.409427 GGGATGAGAAAGTCGACCGAT 59.591 52.381 13.01 0.00 0.00 4.18
2085 2199 2.025226 AGTCGGTGACCTCCTTGATCTA 60.025 50.000 0.00 0.00 32.18 1.98
2150 2264 1.881973 GCACTGACCTCTTGAATTGCA 59.118 47.619 0.00 0.00 0.00 4.08
2153 2267 3.777106 TGAGCACTGACCTCTTGAATT 57.223 42.857 0.00 0.00 0.00 2.17
2281 2405 7.497249 ACTGAATTAATACCAGAGCATTCAGAC 59.503 37.037 20.96 0.00 45.53 3.51
2354 2478 4.215965 CGTAATCACGTTTCAGTTTTGGG 58.784 43.478 0.00 0.00 43.31 4.12
2407 2541 3.883830 ACAACCAGATTTGCACAAACA 57.116 38.095 0.00 0.00 32.51 2.83
2408 2542 4.201802 CCAAACAACCAGATTTGCACAAAC 60.202 41.667 0.00 0.00 34.99 2.93
2409 2543 3.937706 CCAAACAACCAGATTTGCACAAA 59.062 39.130 0.00 0.00 34.99 2.83
2410 2544 3.055530 ACCAAACAACCAGATTTGCACAA 60.056 39.130 0.00 0.00 34.99 3.33
2411 2545 2.499289 ACCAAACAACCAGATTTGCACA 59.501 40.909 0.00 0.00 34.99 4.57
2412 2546 3.123050 GACCAAACAACCAGATTTGCAC 58.877 45.455 0.00 0.00 34.99 4.57
2413 2547 2.762887 TGACCAAACAACCAGATTTGCA 59.237 40.909 0.00 0.00 34.99 4.08
2414 2548 3.451141 TGACCAAACAACCAGATTTGC 57.549 42.857 0.00 0.00 34.99 3.68
2415 2549 5.261209 TCTTGACCAAACAACCAGATTTG 57.739 39.130 0.00 0.00 35.89 2.32
2416 2550 7.781324 ATATCTTGACCAAACAACCAGATTT 57.219 32.000 0.00 0.00 0.00 2.17
2417 2551 7.888021 TGTATATCTTGACCAAACAACCAGATT 59.112 33.333 0.00 0.00 0.00 2.40
2458 2599 1.845791 TGTGTGGGCAGGATCATGTAT 59.154 47.619 9.42 0.00 0.00 2.29
2459 2600 1.065491 GTGTGTGGGCAGGATCATGTA 60.065 52.381 9.42 0.00 0.00 2.29
2460 2601 0.322816 GTGTGTGGGCAGGATCATGT 60.323 55.000 9.42 0.00 0.00 3.21
2461 2602 0.034767 AGTGTGTGGGCAGGATCATG 60.035 55.000 2.22 2.22 0.00 3.07
2462 2603 0.254178 GAGTGTGTGGGCAGGATCAT 59.746 55.000 0.00 0.00 0.00 2.45
2463 2604 1.126948 TGAGTGTGTGGGCAGGATCA 61.127 55.000 0.00 0.00 0.00 2.92
2464 2605 0.036732 TTGAGTGTGTGGGCAGGATC 59.963 55.000 0.00 0.00 0.00 3.36
2465 2606 0.478072 TTTGAGTGTGTGGGCAGGAT 59.522 50.000 0.00 0.00 0.00 3.24
2509 2650 8.557450 AGTTACACCCTAAATTCCATAAGACAT 58.443 33.333 0.00 0.00 0.00 3.06
2653 2803 3.627577 GGTTGGGACACATAAGCATGTAG 59.372 47.826 0.00 0.00 43.73 2.74
2671 2821 5.203528 ACAGAGATAATCATTTGGGGGTTG 58.796 41.667 0.00 0.00 0.00 3.77
2693 2843 8.024865 AGTACTTTTTGTTGTTGTACTGGAAAC 58.975 33.333 0.00 0.00 41.21 2.78
2695 2845 7.690952 AGTACTTTTTGTTGTTGTACTGGAA 57.309 32.000 0.00 0.00 41.21 3.53
2753 2903 6.672147 AGTCTATTGTGCAAACAACAATCTC 58.328 36.000 5.14 0.00 35.87 2.75
2874 3049 3.646637 ACAGGCCAGTGACTAAAAGTACT 59.353 43.478 5.01 0.00 0.00 2.73
2916 3091 4.716784 AGGGAAAGGAAAAGGGAATTATGC 59.283 41.667 0.00 0.00 0.00 3.14
3176 3356 8.327941 ACAATTGTGGATCCTATCATTAATCG 57.672 34.615 11.07 0.00 0.00 3.34
3267 3452 1.202722 ACCCGGTTTGACATCTTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
3268 3453 0.395312 ACCCGGTTTGACATCTTCGT 59.605 50.000 0.00 0.00 0.00 3.85
3269 3454 1.519408 AACCCGGTTTGACATCTTCG 58.481 50.000 0.00 0.00 0.00 3.79
3270 3455 3.671716 AGTAACCCGGTTTGACATCTTC 58.328 45.455 8.44 0.00 0.00 2.87
3271 3456 3.782656 AGTAACCCGGTTTGACATCTT 57.217 42.857 8.44 0.00 0.00 2.40
3273 3458 4.748600 GCTATAGTAACCCGGTTTGACATC 59.251 45.833 8.44 0.00 0.00 3.06
3274 3459 4.162698 TGCTATAGTAACCCGGTTTGACAT 59.837 41.667 8.44 0.44 0.00 3.06
3276 3461 4.117685 CTGCTATAGTAACCCGGTTTGAC 58.882 47.826 8.44 1.29 0.00 3.18
3284 5304 5.998363 CCTGAATTTCCTGCTATAGTAACCC 59.002 44.000 0.84 0.00 0.00 4.11
3436 5458 5.004448 ACAGCCATGATGATGATGATTCTC 58.996 41.667 0.00 0.00 0.00 2.87
3437 5459 4.986783 ACAGCCATGATGATGATGATTCT 58.013 39.130 0.00 0.00 0.00 2.40
3438 5460 5.461526 CAACAGCCATGATGATGATGATTC 58.538 41.667 0.00 0.00 31.12 2.52
3439 5461 4.262036 GCAACAGCCATGATGATGATGATT 60.262 41.667 10.83 0.00 31.12 2.57
3442 5491 2.623416 AGCAACAGCCATGATGATGATG 59.377 45.455 10.83 0.00 31.12 3.07
3521 5626 6.014070 TCAGGTTAACAGGAACATGCTAGTAA 60.014 38.462 8.10 0.00 40.14 2.24
3522 5627 5.482526 TCAGGTTAACAGGAACATGCTAGTA 59.517 40.000 8.10 0.00 40.14 1.82
3635 5748 3.137176 TCTTTTCCCCCTATGATGCAGAG 59.863 47.826 0.00 0.00 0.00 3.35
3652 5765 6.443849 TCCCATTAGTATCACCAGAGTCTTTT 59.556 38.462 0.00 0.00 0.00 2.27
3776 5905 7.360691 CGAATCAGATCAACTTTGAAGACACAT 60.361 37.037 0.00 0.00 41.13 3.21
3778 5908 6.073548 ACGAATCAGATCAACTTTGAAGACAC 60.074 38.462 0.00 0.00 41.13 3.67
3786 5916 6.655003 ACCATGTAACGAATCAGATCAACTTT 59.345 34.615 0.00 0.00 0.00 2.66
3828 5958 1.969208 TGGAACAATGCCTGAATGCAA 59.031 42.857 0.00 0.00 45.84 4.08
3862 5992 8.629158 TCCAAGTCATTTAAAATTCCATATCCG 58.371 33.333 0.00 0.00 0.00 4.18
3871 6001 7.117667 GCAACCGATTCCAAGTCATTTAAAATT 59.882 33.333 0.00 0.00 0.00 1.82
3916 6046 1.401931 CGCAATTCTGGTTTGCTCCTG 60.402 52.381 6.80 0.00 45.67 3.86
3980 6110 6.038356 CACAGCAGTTCACAAAGAAAATTCT 58.962 36.000 0.00 0.00 38.13 2.40
3981 6111 6.035843 TCACAGCAGTTCACAAAGAAAATTC 58.964 36.000 0.00 0.00 38.13 2.17
3982 6112 5.964758 TCACAGCAGTTCACAAAGAAAATT 58.035 33.333 0.00 0.00 38.13 1.82
3983 6113 5.581126 TCACAGCAGTTCACAAAGAAAAT 57.419 34.783 0.00 0.00 38.13 1.82
3984 6114 5.125257 TGATCACAGCAGTTCACAAAGAAAA 59.875 36.000 0.00 0.00 38.13 2.29
3985 6115 4.639755 TGATCACAGCAGTTCACAAAGAAA 59.360 37.500 0.00 0.00 38.13 2.52
3986 6116 4.198530 TGATCACAGCAGTTCACAAAGAA 58.801 39.130 0.00 0.00 0.00 2.52
3987 6117 3.807553 TGATCACAGCAGTTCACAAAGA 58.192 40.909 0.00 0.00 0.00 2.52
3988 6118 4.143194 CTGATCACAGCAGTTCACAAAG 57.857 45.455 0.00 0.00 37.33 2.77
4016 6147 9.073368 CAAAGAAAATGCATCATTAGAACTCTG 57.927 33.333 0.00 0.00 32.43 3.35
4017 6148 8.800332 ACAAAGAAAATGCATCATTAGAACTCT 58.200 29.630 0.00 0.00 32.43 3.24
4018 6149 8.857216 CACAAAGAAAATGCATCATTAGAACTC 58.143 33.333 0.00 0.00 32.43 3.01
4023 6154 8.644619 CAGTTCACAAAGAAAATGCATCATTAG 58.355 33.333 0.00 0.00 38.13 1.73
4024 6155 7.116662 GCAGTTCACAAAGAAAATGCATCATTA 59.883 33.333 0.00 0.00 44.53 1.90
4025 6156 6.073440 GCAGTTCACAAAGAAAATGCATCATT 60.073 34.615 0.00 0.00 44.53 2.57
4026 6157 5.407387 GCAGTTCACAAAGAAAATGCATCAT 59.593 36.000 0.00 0.00 44.53 2.45
4027 6158 4.746115 GCAGTTCACAAAGAAAATGCATCA 59.254 37.500 0.00 0.00 44.53 3.07
4028 6159 4.986659 AGCAGTTCACAAAGAAAATGCATC 59.013 37.500 0.00 0.00 46.16 3.91
4029 6160 4.748102 CAGCAGTTCACAAAGAAAATGCAT 59.252 37.500 9.71 0.00 46.16 3.96
4030 6161 4.114073 CAGCAGTTCACAAAGAAAATGCA 58.886 39.130 9.71 0.00 46.16 3.96
4031 6162 4.026310 CACAGCAGTTCACAAAGAAAATGC 60.026 41.667 0.00 0.00 45.04 3.56
4032 6163 5.342433 TCACAGCAGTTCACAAAGAAAATG 58.658 37.500 0.00 0.00 38.13 2.32
4033 6164 5.581126 TCACAGCAGTTCACAAAGAAAAT 57.419 34.783 0.00 0.00 38.13 1.82
4034 6165 5.125257 TGATCACAGCAGTTCACAAAGAAAA 59.875 36.000 0.00 0.00 38.13 2.29
4035 6166 4.639755 TGATCACAGCAGTTCACAAAGAAA 59.360 37.500 0.00 0.00 38.13 2.52
4036 6167 4.198530 TGATCACAGCAGTTCACAAAGAA 58.801 39.130 0.00 0.00 0.00 2.52
4037 6168 3.807553 TGATCACAGCAGTTCACAAAGA 58.192 40.909 0.00 0.00 0.00 2.52
4038 6169 3.811497 TCTGATCACAGCAGTTCACAAAG 59.189 43.478 0.00 0.00 43.17 2.77
4039 6170 3.807553 TCTGATCACAGCAGTTCACAAA 58.192 40.909 0.00 0.00 43.17 2.83
4040 6171 3.396560 CTCTGATCACAGCAGTTCACAA 58.603 45.455 0.00 0.00 43.17 3.33
4041 6172 2.869237 GCTCTGATCACAGCAGTTCACA 60.869 50.000 17.07 0.00 43.17 3.58
4042 6173 1.731160 GCTCTGATCACAGCAGTTCAC 59.269 52.381 17.07 0.00 43.17 3.18
4043 6174 1.670967 CGCTCTGATCACAGCAGTTCA 60.671 52.381 20.93 0.00 43.17 3.18
4044 6175 0.997932 CGCTCTGATCACAGCAGTTC 59.002 55.000 20.93 0.00 43.17 3.01
4045 6176 1.018226 GCGCTCTGATCACAGCAGTT 61.018 55.000 20.93 0.00 43.17 3.16
4046 6177 1.447489 GCGCTCTGATCACAGCAGT 60.447 57.895 20.93 0.00 43.17 4.40
4047 6178 2.172372 GGCGCTCTGATCACAGCAG 61.172 63.158 20.93 14.62 43.17 4.24
4048 6179 2.125391 GGCGCTCTGATCACAGCA 60.125 61.111 20.93 0.00 43.17 4.41
4049 6180 1.427592 GAAGGCGCTCTGATCACAGC 61.428 60.000 12.55 12.55 43.17 4.40
4050 6181 1.144565 CGAAGGCGCTCTGATCACAG 61.145 60.000 7.64 0.00 44.66 3.66
4051 6182 1.153765 CGAAGGCGCTCTGATCACA 60.154 57.895 7.64 0.00 0.00 3.58
4052 6183 3.698382 CGAAGGCGCTCTGATCAC 58.302 61.111 7.64 0.00 0.00 3.06
4062 6193 1.640428 TCATTAGAACTGCGAAGGCG 58.360 50.000 0.00 0.00 44.10 5.52
4063 6194 3.198068 TCATCATTAGAACTGCGAAGGC 58.802 45.455 0.00 0.00 40.52 4.35
4064 6195 5.052481 TGATCATCATTAGAACTGCGAAGG 58.948 41.667 0.00 0.00 0.00 3.46
4107 6350 1.656095 GAGAATTTGACAGCCGAGTCG 59.344 52.381 5.29 5.29 41.41 4.18
4132 6386 3.416156 ACCTCTGTTTTTGCTGAGATCC 58.584 45.455 0.00 0.00 36.82 3.36
4136 6390 3.372206 CCGATACCTCTGTTTTTGCTGAG 59.628 47.826 0.00 0.00 35.21 3.35
4142 6398 1.276989 TCCGCCGATACCTCTGTTTTT 59.723 47.619 0.00 0.00 0.00 1.94
4159 6415 0.248661 CCAGACAGAGCGTATGTCCG 60.249 60.000 13.23 5.60 46.68 4.79
4160 6416 0.528684 GCCAGACAGAGCGTATGTCC 60.529 60.000 13.23 0.00 46.68 4.02
4161 6417 0.173481 TGCCAGACAGAGCGTATGTC 59.827 55.000 10.00 10.00 46.01 3.06
4162 6418 2.276869 TGCCAGACAGAGCGTATGT 58.723 52.632 0.00 0.00 34.91 2.29
4172 6428 1.148949 TTGCTGCTTCTGCCAGACA 59.851 52.632 0.00 0.00 38.71 3.41
4181 6437 2.032178 AGTGTCTTTTCGTTGCTGCTTC 59.968 45.455 0.00 0.00 0.00 3.86
4184 6440 2.475200 AAGTGTCTTTTCGTTGCTGC 57.525 45.000 0.00 0.00 0.00 5.25
4232 6490 7.700022 TGTCTGTCTCTATCTCATCATATGG 57.300 40.000 2.13 0.00 0.00 2.74
4264 6522 2.187958 TGGAACAGAGGGAGTACATGG 58.812 52.381 0.00 0.00 0.00 3.66
4284 6542 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4290 6548 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4292 6550 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
4319 6577 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
4322 6580 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4323 6581 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4325 6583 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4327 6585 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4328 6586 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4330 6588 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4331 6589 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4332 6590 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4333 6591 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4339 10161 1.621814 CTTTGTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
4340 10162 1.066358 CCTTTGTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
4383 10208 3.222173 TGTGTGTAAATCTGCCAGGTT 57.778 42.857 0.00 0.00 0.00 3.50
4404 10230 2.285083 CGGTGGTTCAGAGTTTGTCAA 58.715 47.619 0.00 0.00 0.00 3.18
4412 10238 2.046892 CAGCCCGGTGGTTCAGAG 60.047 66.667 0.00 0.00 0.00 3.35
4413 10239 3.636231 CCAGCCCGGTGGTTCAGA 61.636 66.667 0.00 0.00 32.32 3.27
4416 10242 4.717313 GTCCCAGCCCGGTGGTTC 62.717 72.222 11.76 1.30 35.60 3.62
4419 10245 4.802051 CATGTCCCAGCCCGGTGG 62.802 72.222 5.93 5.93 37.34 4.61
4422 10248 2.947938 CTTAGCATGTCCCAGCCCGG 62.948 65.000 0.00 0.00 0.00 5.73
4423 10249 1.524621 CTTAGCATGTCCCAGCCCG 60.525 63.158 0.00 0.00 0.00 6.13
4424 10250 1.152881 CCTTAGCATGTCCCAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
4425 10251 1.152881 CCCTTAGCATGTCCCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
4426 10252 1.825622 GCCCTTAGCATGTCCCAGC 60.826 63.158 0.00 0.00 42.97 4.85
4497 10339 1.249407 GTCGATAGTAGCCTGAGGGG 58.751 60.000 0.00 0.00 36.09 4.79
4499 10341 1.532007 GACGTCGATAGTAGCCTGAGG 59.468 57.143 0.00 0.00 37.40 3.86
4500 10342 2.210961 TGACGTCGATAGTAGCCTGAG 58.789 52.381 11.62 0.00 37.40 3.35
4501 10343 2.320745 TGACGTCGATAGTAGCCTGA 57.679 50.000 11.62 0.00 37.40 3.86
4503 10345 2.751259 TGTTTGACGTCGATAGTAGCCT 59.249 45.455 11.62 0.00 37.40 4.58
4504 10346 3.106672 CTGTTTGACGTCGATAGTAGCC 58.893 50.000 11.62 0.00 37.40 3.93
4505 10347 3.106672 CCTGTTTGACGTCGATAGTAGC 58.893 50.000 11.62 0.00 37.40 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.