Multiple sequence alignment - TraesCS1B01G317100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G317100 chr1B 100.000 5273 0 0 1 5273 542134631 542139903 0.000000e+00 9738.0
1 TraesCS1B01G317100 chr1B 97.849 93 2 0 4437 4529 258729971 258729879 1.520000e-35 161.0
2 TraesCS1B01G317100 chr1B 96.970 33 1 0 4352 4384 542138932 542138964 7.380000e-04 56.5
3 TraesCS1B01G317100 chr1B 96.970 33 1 0 4302 4334 542138982 542139014 7.380000e-04 56.5
4 TraesCS1B01G317100 chr1A 92.824 3665 156 38 237 3841 498532458 498536075 0.000000e+00 5212.0
5 TraesCS1B01G317100 chr1A 93.111 450 20 2 4827 5265 498537112 498537561 0.000000e+00 649.0
6 TraesCS1B01G317100 chr1A 90.110 273 13 9 3869 4127 498536073 498536345 5.060000e-90 342.0
7 TraesCS1B01G317100 chr1A 96.599 147 5 0 4138 4284 498536440 498536586 1.470000e-60 244.0
8 TraesCS1B01G317100 chr1A 82.353 170 9 8 4282 4434 498536643 498536808 1.540000e-25 128.0
9 TraesCS1B01G317100 chr1A 90.805 87 6 1 4520 4606 498536813 498536897 1.200000e-21 115.0
10 TraesCS1B01G317100 chr1A 96.970 33 1 0 4352 4384 498536659 498536691 7.380000e-04 56.5
11 TraesCS1B01G317100 chr1D 93.580 3536 140 27 109 3588 403272977 403276481 0.000000e+00 5192.0
12 TraesCS1B01G317100 chr1D 93.692 650 34 3 3638 4284 403276485 403277130 0.000000e+00 966.0
13 TraesCS1B01G317100 chr1D 92.222 450 22 5 4824 5268 403281338 403281779 4.480000e-175 625.0
14 TraesCS1B01G317100 chr1D 85.490 255 31 6 1990 2240 367846123 367846375 1.460000e-65 261.0
15 TraesCS1B01G317100 chr1D 82.109 313 38 8 4971 5266 403334273 403333962 8.770000e-63 252.0
16 TraesCS1B01G317100 chr1D 85.714 238 30 4 2004 2238 423862149 423861913 1.130000e-61 248.0
17 TraesCS1B01G317100 chr1D 82.511 223 15 9 4502 4714 403280983 403281191 1.950000e-39 174.0
18 TraesCS1B01G317100 chr1D 98.947 95 1 0 4437 4531 97421641 97421547 2.530000e-38 171.0
19 TraesCS1B01G317100 chr1D 83.938 193 10 9 4282 4457 403277186 403277374 1.170000e-36 165.0
20 TraesCS1B01G317100 chr1D 96.970 33 1 0 4352 4384 403277202 403277234 7.380000e-04 56.5
21 TraesCS1B01G317100 chr5D 87.983 233 21 5 2005 2234 66973808 66974036 8.700000e-68 268.0
22 TraesCS1B01G317100 chr5D 86.809 235 29 2 2005 2238 491433559 491433792 1.460000e-65 261.0
23 TraesCS1B01G317100 chr6B 85.271 258 34 4 1985 2239 715838675 715838419 4.050000e-66 263.0
24 TraesCS1B01G317100 chr5A 85.375 253 28 9 1991 2238 130535256 130535504 2.440000e-63 254.0
25 TraesCS1B01G317100 chr3B 84.706 255 28 9 1990 2239 29284306 29284058 1.470000e-60 244.0
26 TraesCS1B01G317100 chr3B 98.889 90 1 0 4434 4523 42629627 42629538 1.520000e-35 161.0
27 TraesCS1B01G317100 chr5B 99.091 110 1 0 1 110 519649464 519649573 1.160000e-46 198.0
28 TraesCS1B01G317100 chr2A 93.694 111 7 0 3 113 383602572 383602462 3.270000e-37 167.0
29 TraesCS1B01G317100 chr2A 98.876 89 1 0 4434 4522 693209890 693209978 5.470000e-35 159.0
30 TraesCS1B01G317100 chr4D 93.519 108 7 0 2 109 482687449 482687556 1.520000e-35 161.0
31 TraesCS1B01G317100 chr6D 95.918 98 2 2 4433 4528 400294358 400294261 1.970000e-34 158.0
32 TraesCS1B01G317100 chr6D 89.516 124 8 4 4433 4554 439490793 439490673 9.150000e-33 152.0
33 TraesCS1B01G317100 chr3A 96.809 94 3 0 4433 4526 646126919 646126826 1.970000e-34 158.0
34 TraesCS1B01G317100 chr7B 96.809 94 2 1 4437 4529 639040021 639040114 7.070000e-34 156.0
35 TraesCS1B01G317100 chr7B 91.743 109 7 2 4433 4540 702244518 702244411 3.290000e-32 150.0
36 TraesCS1B01G317100 chr7B 90.291 103 10 0 1 103 48968603 48968501 9.210000e-28 135.0
37 TraesCS1B01G317100 chr3D 91.071 112 10 0 1 112 273508252 273508363 9.150000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G317100 chr1B 542134631 542139903 5272 False 3283.666667 9738 97.980000 1 5273 3 chr1B.!!$F1 5272
1 TraesCS1B01G317100 chr1A 498532458 498537561 5103 False 963.785714 5212 91.824571 237 5265 7 chr1A.!!$F1 5028
2 TraesCS1B01G317100 chr1D 403272977 403281779 8802 False 1196.416667 5192 90.485500 109 5268 6 chr1D.!!$F2 5159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.035056 AAATCTCCCTGCCGTGGAAG 60.035 55.000 0.00 0.00 0.0 3.46 F
37 38 0.103937 CTGCCGTGGAAGGAGATCTC 59.896 60.000 14.75 14.75 0.0 2.75 F
86 87 0.178947 TTTGCTCCCCCGGTTTTGAT 60.179 50.000 0.00 0.00 0.0 2.57 F
87 88 0.178947 TTGCTCCCCCGGTTTTGATT 60.179 50.000 0.00 0.00 0.0 2.57 F
88 89 0.610785 TGCTCCCCCGGTTTTGATTC 60.611 55.000 0.00 0.00 0.0 2.52 F
764 792 0.882927 TGCTCGTGTTTTCCTTCCCG 60.883 55.000 0.00 0.00 0.0 5.14 F
1860 1901 1.135402 CCTGTTTTCCTACGCATTGGC 60.135 52.381 0.00 0.00 0.0 4.52 F
3480 3540 0.817013 ACGGCATATGCTTTGGTTGG 59.183 50.000 26.12 8.77 41.7 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1312 0.037882 CCGTCTTCTTGCTCAGCTCA 60.038 55.000 0.00 0.00 0.00 4.26 R
1885 1926 1.057636 CACAAAGCTTTGATGCTGCG 58.942 50.000 38.78 15.51 43.24 5.18 R
1964 2012 9.193806 ACCTAATGATATTCTTGCAATTTGACT 57.806 29.630 0.00 0.00 0.00 3.41 R
2238 2288 0.969149 CTACTCCAGTGGCACAGTCA 59.031 55.000 21.41 0.00 41.96 3.41 R
2304 2354 8.159344 AGAATGCACTAGGTTATTGCTATTTC 57.841 34.615 0.00 5.09 35.62 2.17 R
2660 2718 2.205022 AATGAGATGTGTGGGTGGTG 57.795 50.000 0.00 0.00 0.00 4.17 R
3657 3733 0.178926 TCTGTTGGGTAACTCCGGGA 60.179 55.000 0.00 0.00 37.68 5.14 R
4557 8376 0.034574 TGGCCACATACATGACCACC 60.035 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.225497 GGAAATCTCCCTGCCGTG 57.775 61.111 0.00 0.00 35.42 4.94
26 27 1.452108 GGAAATCTCCCTGCCGTGG 60.452 63.158 0.00 0.00 35.42 4.94
27 28 1.602237 GAAATCTCCCTGCCGTGGA 59.398 57.895 0.00 0.00 0.00 4.02
28 29 0.035439 GAAATCTCCCTGCCGTGGAA 60.035 55.000 0.00 0.00 0.00 3.53
29 30 0.035056 AAATCTCCCTGCCGTGGAAG 60.035 55.000 0.00 0.00 0.00 3.46
30 31 1.915078 AATCTCCCTGCCGTGGAAGG 61.915 60.000 5.87 5.87 40.73 3.46
31 32 2.822643 ATCTCCCTGCCGTGGAAGGA 62.823 60.000 15.10 3.31 43.85 3.36
32 33 3.003173 TCCCTGCCGTGGAAGGAG 61.003 66.667 15.10 4.87 43.85 3.69
33 34 3.003173 CCCTGCCGTGGAAGGAGA 61.003 66.667 15.10 0.00 43.85 3.71
34 35 2.370445 CCCTGCCGTGGAAGGAGAT 61.370 63.158 15.10 0.00 43.85 2.75
35 36 1.144936 CCTGCCGTGGAAGGAGATC 59.855 63.158 7.19 0.00 43.85 2.75
36 37 1.333636 CCTGCCGTGGAAGGAGATCT 61.334 60.000 7.19 0.00 43.85 2.75
37 38 0.103937 CTGCCGTGGAAGGAGATCTC 59.896 60.000 14.75 14.75 0.00 2.75
38 39 0.614697 TGCCGTGGAAGGAGATCTCA 60.615 55.000 23.85 0.68 0.00 3.27
39 40 0.755686 GCCGTGGAAGGAGATCTCAT 59.244 55.000 23.85 15.01 0.00 2.90
40 41 1.964223 GCCGTGGAAGGAGATCTCATA 59.036 52.381 23.85 0.00 0.00 2.15
41 42 2.564947 GCCGTGGAAGGAGATCTCATAT 59.435 50.000 23.85 9.28 0.00 1.78
42 43 3.616076 GCCGTGGAAGGAGATCTCATATG 60.616 52.174 23.85 7.84 0.00 1.78
43 44 3.583806 CGTGGAAGGAGATCTCATATGC 58.416 50.000 23.85 14.11 0.00 3.14
44 45 3.616076 CGTGGAAGGAGATCTCATATGCC 60.616 52.174 23.85 18.06 0.00 4.40
45 46 3.326006 GTGGAAGGAGATCTCATATGCCA 59.674 47.826 23.85 20.14 0.00 4.92
46 47 4.019501 GTGGAAGGAGATCTCATATGCCAT 60.020 45.833 23.85 0.55 0.00 4.40
47 48 4.019591 TGGAAGGAGATCTCATATGCCATG 60.020 45.833 23.85 0.00 0.00 3.66
48 49 4.224594 GGAAGGAGATCTCATATGCCATGA 59.775 45.833 23.85 0.00 0.00 3.07
49 50 5.280368 GGAAGGAGATCTCATATGCCATGAA 60.280 44.000 23.85 0.00 0.00 2.57
50 51 5.837770 AGGAGATCTCATATGCCATGAAA 57.162 39.130 23.85 0.00 0.00 2.69
51 52 6.196918 AGGAGATCTCATATGCCATGAAAA 57.803 37.500 23.85 0.00 0.00 2.29
52 53 6.791371 AGGAGATCTCATATGCCATGAAAAT 58.209 36.000 23.85 0.00 0.00 1.82
53 54 7.239438 AGGAGATCTCATATGCCATGAAAATT 58.761 34.615 23.85 0.00 0.00 1.82
54 55 7.393796 AGGAGATCTCATATGCCATGAAAATTC 59.606 37.037 23.85 0.36 0.00 2.17
55 56 7.362747 GGAGATCTCATATGCCATGAAAATTCC 60.363 40.741 23.85 0.00 0.00 3.01
56 57 6.436532 AGATCTCATATGCCATGAAAATTCCC 59.563 38.462 0.00 0.00 0.00 3.97
57 58 4.834496 TCTCATATGCCATGAAAATTCCCC 59.166 41.667 0.00 0.00 0.00 4.81
58 59 3.903090 TCATATGCCATGAAAATTCCCCC 59.097 43.478 0.00 0.00 0.00 5.40
59 60 1.122227 ATGCCATGAAAATTCCCCCG 58.878 50.000 0.00 0.00 0.00 5.73
60 61 0.975040 TGCCATGAAAATTCCCCCGG 60.975 55.000 0.00 0.00 0.00 5.73
61 62 1.822615 CCATGAAAATTCCCCCGGC 59.177 57.895 0.00 0.00 0.00 6.13
62 63 0.687427 CCATGAAAATTCCCCCGGCT 60.687 55.000 0.00 0.00 0.00 5.52
63 64 0.461135 CATGAAAATTCCCCCGGCTG 59.539 55.000 0.00 0.00 0.00 4.85
64 65 0.687427 ATGAAAATTCCCCCGGCTGG 60.687 55.000 3.88 3.88 0.00 4.85
81 82 4.295199 GGGTTTGCTCCCCCGGTT 62.295 66.667 0.00 0.00 41.54 4.44
82 83 2.203582 GGTTTGCTCCCCCGGTTT 60.204 61.111 0.00 0.00 0.00 3.27
83 84 1.835267 GGTTTGCTCCCCCGGTTTT 60.835 57.895 0.00 0.00 0.00 2.43
84 85 1.365999 GTTTGCTCCCCCGGTTTTG 59.634 57.895 0.00 0.00 0.00 2.44
85 86 1.110518 GTTTGCTCCCCCGGTTTTGA 61.111 55.000 0.00 0.00 0.00 2.69
86 87 0.178947 TTTGCTCCCCCGGTTTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
87 88 0.178947 TTGCTCCCCCGGTTTTGATT 60.179 50.000 0.00 0.00 0.00 2.57
88 89 0.610785 TGCTCCCCCGGTTTTGATTC 60.611 55.000 0.00 0.00 0.00 2.52
89 90 1.654023 GCTCCCCCGGTTTTGATTCG 61.654 60.000 0.00 0.00 0.00 3.34
90 91 1.001887 TCCCCCGGTTTTGATTCGG 60.002 57.895 0.00 0.00 43.05 4.30
91 92 2.706834 CCCCCGGTTTTGATTCGGC 61.707 63.158 0.00 0.00 42.18 5.54
92 93 1.677633 CCCCGGTTTTGATTCGGCT 60.678 57.895 0.00 0.00 42.18 5.52
93 94 1.506262 CCCGGTTTTGATTCGGCTG 59.494 57.895 0.00 0.00 42.18 4.85
94 95 1.154035 CCGGTTTTGATTCGGCTGC 60.154 57.895 0.00 0.00 37.25 5.25
95 96 1.586154 CCGGTTTTGATTCGGCTGCT 61.586 55.000 0.00 0.00 37.25 4.24
96 97 1.083489 CGGTTTTGATTCGGCTGCTA 58.917 50.000 0.00 0.00 0.00 3.49
97 98 1.202031 CGGTTTTGATTCGGCTGCTAC 60.202 52.381 0.00 0.00 0.00 3.58
98 99 1.132453 GGTTTTGATTCGGCTGCTACC 59.868 52.381 0.00 0.00 0.00 3.18
99 100 1.810151 GTTTTGATTCGGCTGCTACCA 59.190 47.619 0.00 0.00 0.00 3.25
100 101 2.192664 TTTGATTCGGCTGCTACCAA 57.807 45.000 0.00 0.00 0.00 3.67
101 102 2.192664 TTGATTCGGCTGCTACCAAA 57.807 45.000 0.00 0.00 0.00 3.28
102 103 2.418368 TGATTCGGCTGCTACCAAAT 57.582 45.000 0.00 0.00 0.00 2.32
103 104 2.722094 TGATTCGGCTGCTACCAAATT 58.278 42.857 0.00 0.00 0.00 1.82
104 105 3.879998 TGATTCGGCTGCTACCAAATTA 58.120 40.909 0.00 0.00 0.00 1.40
105 106 3.876914 TGATTCGGCTGCTACCAAATTAG 59.123 43.478 0.00 0.00 0.00 1.73
106 107 1.663695 TCGGCTGCTACCAAATTAGC 58.336 50.000 0.00 0.00 44.21 3.09
113 114 4.584743 GCTGCTACCAAATTAGCCCTAAAT 59.415 41.667 0.00 0.00 43.43 1.40
128 129 2.440501 CTAAATGCACATCGCCGAAAC 58.559 47.619 0.00 0.00 41.33 2.78
143 144 5.292589 TCGCCGAAACTCCTGAAATAAATAC 59.707 40.000 0.00 0.00 0.00 1.89
162 163 6.764877 AATACGAGATAAATACAAGCACCG 57.235 37.500 0.00 0.00 0.00 4.94
163 164 3.454375 ACGAGATAAATACAAGCACCGG 58.546 45.455 0.00 0.00 0.00 5.28
177 178 1.228154 ACCGGGACTTGAACCTTGC 60.228 57.895 6.32 0.00 0.00 4.01
181 182 1.813862 CGGGACTTGAACCTTGCTGAA 60.814 52.381 0.00 0.00 0.00 3.02
186 187 5.010617 GGGACTTGAACCTTGCTGAATTAAA 59.989 40.000 0.00 0.00 0.00 1.52
231 232 5.365403 TCCGTTGTATTTTGTCCACATTC 57.635 39.130 0.00 0.00 0.00 2.67
326 328 2.727123 TGTTGGAAGCTCAAACTGGA 57.273 45.000 0.00 0.00 0.00 3.86
437 453 2.361104 GTTTCGCATCAGGGCCCA 60.361 61.111 27.56 3.72 0.00 5.36
438 454 1.754234 GTTTCGCATCAGGGCCCAT 60.754 57.895 27.56 6.68 0.00 4.00
520 542 0.921256 CTCCTCCCTTCCCCAATGGT 60.921 60.000 0.00 0.00 34.77 3.55
530 552 2.589540 CCAATGGTAGGCGCCAGA 59.410 61.111 31.54 13.96 42.47 3.86
533 555 1.091771 CAATGGTAGGCGCCAGACTG 61.092 60.000 31.54 15.88 42.47 3.51
612 640 1.673009 GGTGCCCCGTTCAATTCGA 60.673 57.895 0.00 0.00 0.00 3.71
703 731 1.219646 CGTCGTTCCCGGAAGAAAAA 58.780 50.000 0.73 0.00 33.95 1.94
720 748 6.702716 AGAAAAATCGAGGTTGGTTTAACA 57.297 33.333 0.00 0.00 41.18 2.41
764 792 0.882927 TGCTCGTGTTTTCCTTCCCG 60.883 55.000 0.00 0.00 0.00 5.14
782 810 2.416566 CCCGAGTCACTCTGTTCATGAG 60.417 54.545 2.61 0.00 37.55 2.90
785 813 1.889170 AGTCACTCTGTTCATGAGCGA 59.111 47.619 5.02 4.79 35.12 4.93
821 849 4.074259 TCTGATGCAAACATGCTACTGTT 58.926 39.130 0.00 0.00 41.01 3.16
1011 1045 3.736100 CAGGCAATGGCGTCGCAA 61.736 61.111 20.50 8.55 42.47 4.85
1352 1389 2.316372 AGAGAAGTGGTGAGGAGGGTAT 59.684 50.000 0.00 0.00 0.00 2.73
1452 1489 2.042842 TGAAGGGCATTTGAAGGATCCA 59.957 45.455 15.82 0.00 0.00 3.41
1496 1533 1.574702 GCGGTTGGGAGCAGTGTAAC 61.575 60.000 0.00 0.00 0.00 2.50
1860 1901 1.135402 CCTGTTTTCCTACGCATTGGC 60.135 52.381 0.00 0.00 0.00 4.52
1999 2047 8.594550 GCAAGAATATCATTAGGTACTCCCTTA 58.405 37.037 0.00 0.00 42.73 2.69
2439 2489 7.491696 ACTTTGTCTTCTGTTACTGTAACACTC 59.508 37.037 25.14 15.03 43.23 3.51
2568 2625 7.801716 AAGCTATTTTGTTTCACACTAGTCA 57.198 32.000 0.00 0.00 0.00 3.41
2585 2642 7.042658 ACACTAGTCAATCGTTCAACTTCTTTC 60.043 37.037 0.00 0.00 0.00 2.62
2634 2692 9.961265 GTGTAATAAGTGCACTATACTGATGTA 57.039 33.333 22.01 5.64 39.57 2.29
2660 2718 9.561069 AATCATGTTAGTTGATTCCATAGTACC 57.439 33.333 0.00 0.00 39.06 3.34
2673 2731 2.032965 TAGTACCACCACCCACACAT 57.967 50.000 0.00 0.00 0.00 3.21
2687 2745 5.008019 CACCCACACATCTCATTTAGTATGC 59.992 44.000 0.00 0.00 0.00 3.14
2722 2780 8.093307 CCTGTATCTATATTGTCACTGCTGAAT 58.907 37.037 0.00 0.00 0.00 2.57
2731 2789 3.200605 TGTCACTGCTGAATCCCATATGT 59.799 43.478 1.24 0.00 0.00 2.29
2773 2832 8.918202 TGTCCAGTATTGTTGAGAAAACTATT 57.082 30.769 0.00 0.00 0.00 1.73
2797 2856 1.726791 GTTACCATGCTGACAGACACG 59.273 52.381 6.65 0.00 0.00 4.49
2825 2884 7.515684 GCAGTGATCTCATTGTTTGTTTTTGAC 60.516 37.037 0.00 0.00 36.18 3.18
2854 2913 9.944376 TCAAATATCTATTGGAGGCTATGTAAC 57.056 33.333 0.00 0.00 0.00 2.50
2891 2950 9.950680 TCTCAAAGTTATTTTTCTTGCTTACAG 57.049 29.630 0.00 0.00 0.00 2.74
2892 2951 9.950680 CTCAAAGTTATTTTTCTTGCTTACAGA 57.049 29.630 0.00 0.00 0.00 3.41
2893 2952 9.950680 TCAAAGTTATTTTTCTTGCTTACAGAG 57.049 29.630 0.00 0.00 0.00 3.35
2918 2977 6.363357 GCTAACTAAGTTTTGGCATTGACTTG 59.637 38.462 16.23 10.79 34.46 3.16
2919 2978 6.463995 AACTAAGTTTTGGCATTGACTTGA 57.536 33.333 16.23 4.99 34.46 3.02
2920 2979 6.463995 ACTAAGTTTTGGCATTGACTTGAA 57.536 33.333 16.23 2.45 34.46 2.69
2921 2980 6.507023 ACTAAGTTTTGGCATTGACTTGAAG 58.493 36.000 16.23 11.11 34.46 3.02
2922 2981 5.596836 AAGTTTTGGCATTGACTTGAAGA 57.403 34.783 0.00 0.00 31.59 2.87
2923 2982 5.796424 AGTTTTGGCATTGACTTGAAGAT 57.204 34.783 0.00 0.00 0.00 2.40
2929 2988 3.248266 GCATTGACTTGAAGATTGTGCC 58.752 45.455 0.00 0.00 0.00 5.01
2937 2996 3.988379 TGAAGATTGTGCCACACTTTC 57.012 42.857 0.00 2.74 35.11 2.62
2944 3003 4.630894 TTGTGCCACACTTTCTTTACAG 57.369 40.909 0.00 0.00 35.11 2.74
2996 3055 3.165071 ACTGAATGGGGCTAGTTTTTGG 58.835 45.455 0.00 0.00 0.00 3.28
3118 3177 3.134081 ACCCTACTGAATGTATTGACCGG 59.866 47.826 0.00 0.00 0.00 5.28
3167 3226 4.374843 TTGCATGGTGAAGTTGATATGC 57.625 40.909 0.00 0.00 40.81 3.14
3179 3238 1.799544 TGATATGCGCATGGCTACAG 58.200 50.000 32.48 0.00 44.05 2.74
3226 3285 9.683069 CAGAAAAACTGCTATTTAATGACTTGT 57.317 29.630 0.00 0.00 39.86 3.16
3232 3291 9.502091 AACTGCTATTTAATGACTTGTAGTTGA 57.498 29.630 0.00 0.00 30.33 3.18
3233 3292 8.936864 ACTGCTATTTAATGACTTGTAGTTGAC 58.063 33.333 0.00 0.00 0.00 3.18
3254 3313 7.834881 TGACTAGTGGGGTTTGTCTATATAG 57.165 40.000 0.00 3.10 0.00 1.31
3255 3314 7.589081 TGACTAGTGGGGTTTGTCTATATAGA 58.411 38.462 8.44 8.44 0.00 1.98
3256 3315 8.232412 TGACTAGTGGGGTTTGTCTATATAGAT 58.768 37.037 15.43 0.00 34.39 1.98
3257 3316 9.750783 GACTAGTGGGGTTTGTCTATATAGATA 57.249 37.037 15.43 10.27 34.39 1.98
3307 3367 6.708949 ACTCTATTGTTTCGGTTGCTTCTTAA 59.291 34.615 0.00 0.00 0.00 1.85
3308 3368 7.390718 ACTCTATTGTTTCGGTTGCTTCTTAAT 59.609 33.333 0.00 0.00 0.00 1.40
3309 3369 8.780846 TCTATTGTTTCGGTTGCTTCTTAATA 57.219 30.769 0.00 0.00 0.00 0.98
3335 3395 9.095065 AGTAGTTCTTATTAGTTAACAATGCGG 57.905 33.333 8.61 0.00 0.00 5.69
3338 3398 6.671614 TCTTATTAGTTAACAATGCGGGTG 57.328 37.500 8.61 0.00 0.00 4.61
3339 3399 6.408035 TCTTATTAGTTAACAATGCGGGTGA 58.592 36.000 8.61 0.00 0.00 4.02
3397 3457 2.480037 TGTACGAAGAACTGCAGCATTG 59.520 45.455 15.27 4.03 0.00 2.82
3417 3477 8.910944 AGCATTGATTCATAGAACTTTATTGCT 58.089 29.630 0.00 0.00 0.00 3.91
3425 3485 8.939201 TCATAGAACTTTATTGCTCTTCTCTG 57.061 34.615 0.00 0.00 0.00 3.35
3429 3489 3.688673 ACTTTATTGCTCTTCTCTGCAGC 59.311 43.478 9.47 0.00 40.46 5.25
3480 3540 0.817013 ACGGCATATGCTTTGGTTGG 59.183 50.000 26.12 8.77 41.70 3.77
3489 3549 3.244033 TGCTTTGGTTGGTCAAAACTG 57.756 42.857 0.00 0.00 36.37 3.16
3515 3575 7.872881 AGTTGCTGCTGAGAATTGAATATATG 58.127 34.615 0.00 0.00 0.00 1.78
3547 3622 9.674824 GTTATCTTGAATCAATGAATCATGTCC 57.325 33.333 12.11 0.00 0.00 4.02
3563 3638 3.301794 TGTCCCTATACTTGGCGAGTA 57.698 47.619 16.71 16.71 44.62 2.59
3566 3641 3.887716 GTCCCTATACTTGGCGAGTAAGA 59.112 47.826 18.18 10.13 43.76 2.10
3567 3642 4.023021 GTCCCTATACTTGGCGAGTAAGAG 60.023 50.000 18.18 16.60 43.76 2.85
3591 3666 5.652452 GGTGTAATAGAATTGCTTCCCTGTT 59.348 40.000 0.00 0.00 31.27 3.16
3592 3667 6.183360 GGTGTAATAGAATTGCTTCCCTGTTC 60.183 42.308 0.00 0.00 31.27 3.18
3593 3668 6.374333 GTGTAATAGAATTGCTTCCCTGTTCA 59.626 38.462 0.00 0.00 31.27 3.18
3595 3670 3.228188 AGAATTGCTTCCCTGTTCACA 57.772 42.857 0.00 0.00 31.27 3.58
3596 3671 3.565307 AGAATTGCTTCCCTGTTCACAA 58.435 40.909 0.00 0.00 31.27 3.33
3597 3672 4.154942 AGAATTGCTTCCCTGTTCACAAT 58.845 39.130 0.00 0.00 31.27 2.71
3598 3673 4.590222 AGAATTGCTTCCCTGTTCACAATT 59.410 37.500 0.00 0.00 39.65 2.32
3600 3675 1.340889 TGCTTCCCTGTTCACAATTGC 59.659 47.619 5.05 0.00 0.00 3.56
3601 3676 1.340889 GCTTCCCTGTTCACAATTGCA 59.659 47.619 5.05 0.00 0.00 4.08
3602 3677 2.863704 GCTTCCCTGTTCACAATTGCAC 60.864 50.000 5.05 0.61 0.00 4.57
3603 3678 2.064434 TCCCTGTTCACAATTGCACA 57.936 45.000 5.05 5.50 0.00 4.57
3604 3679 1.955778 TCCCTGTTCACAATTGCACAG 59.044 47.619 19.29 19.29 44.13 3.66
3605 3680 1.682854 CCCTGTTCACAATTGCACAGT 59.317 47.619 22.22 0.00 43.30 3.55
3606 3681 2.884012 CCCTGTTCACAATTGCACAGTA 59.116 45.455 22.22 2.00 43.30 2.74
3607 3682 3.058016 CCCTGTTCACAATTGCACAGTAG 60.058 47.826 22.22 14.20 43.30 2.57
3608 3683 3.558505 CTGTTCACAATTGCACAGTAGC 58.441 45.455 18.48 0.00 40.83 3.58
3609 3684 3.213506 TGTTCACAATTGCACAGTAGCT 58.786 40.909 5.05 0.00 34.99 3.32
3610 3685 3.250762 TGTTCACAATTGCACAGTAGCTC 59.749 43.478 5.05 0.00 34.99 4.09
3611 3686 3.407424 TCACAATTGCACAGTAGCTCT 57.593 42.857 5.05 0.00 34.99 4.09
3612 3687 3.329386 TCACAATTGCACAGTAGCTCTC 58.671 45.455 5.05 0.00 34.99 3.20
3613 3688 2.417933 CACAATTGCACAGTAGCTCTCC 59.582 50.000 5.05 0.00 34.99 3.71
3614 3689 2.038952 ACAATTGCACAGTAGCTCTCCA 59.961 45.455 5.05 0.00 34.99 3.86
3660 3736 8.630037 CCCAGTTCTTTATACAATTACAATCCC 58.370 37.037 0.00 0.00 0.00 3.85
3688 3764 2.242043 CCCAACAGATTGCAGTCCTTT 58.758 47.619 5.47 0.00 34.17 3.11
3730 3806 7.394077 ACACATATCATGAACATTGACAGGAAA 59.606 33.333 0.00 0.00 31.05 3.13
3754 3830 5.065988 ACACACTTAACAAACAGATCACCAC 59.934 40.000 0.00 0.00 0.00 4.16
3768 3844 5.007039 CAGATCACCACTGGAAATGAATACG 59.993 44.000 0.71 0.00 0.00 3.06
3787 3863 8.019669 TGAATACGTTAGACTTTGTACTCACTC 58.980 37.037 0.00 0.00 0.00 3.51
3795 3871 6.380190 AGACTTTGTACTCACTCAATCGTAC 58.620 40.000 0.00 0.00 34.37 3.67
3796 3872 6.016527 AGACTTTGTACTCACTCAATCGTACA 60.017 38.462 0.00 0.00 40.07 2.90
3797 3873 6.688578 ACTTTGTACTCACTCAATCGTACAT 58.311 36.000 0.00 0.00 41.03 2.29
3844 3922 6.430000 GGTAAAAGAAAACCACAGAGAGCATA 59.570 38.462 0.00 0.00 35.73 3.14
3846 3924 6.506500 AAAGAAAACCACAGAGAGCATATG 57.493 37.500 0.00 0.00 0.00 1.78
3932 4010 3.695830 TCTGTTAAGACCACATCACCC 57.304 47.619 0.00 0.00 0.00 4.61
4002 4080 7.400627 AGTCCTATTCTTTCTTAGCCTAACACT 59.599 37.037 0.00 0.00 0.00 3.55
4026 4118 4.860072 TGATACTGAGATTTCATCGGTCG 58.140 43.478 0.00 0.00 37.46 4.79
4104 4196 6.866480 TCTTCAATTCAGCAAACAATATCCC 58.134 36.000 0.00 0.00 0.00 3.85
4113 4205 3.509575 GCAAACAATATCCCCACACTTCA 59.490 43.478 0.00 0.00 0.00 3.02
4126 4218 4.142315 CCCACACTTCATTTGGATGCTAAG 60.142 45.833 0.00 0.00 33.14 2.18
4127 4219 4.460382 CCACACTTCATTTGGATGCTAAGT 59.540 41.667 0.00 0.00 33.17 2.24
4128 4220 5.647658 CCACACTTCATTTGGATGCTAAGTA 59.352 40.000 0.00 0.00 31.94 2.24
4129 4221 6.403636 CCACACTTCATTTGGATGCTAAGTAC 60.404 42.308 0.00 0.00 31.94 2.73
4180 4360 1.464997 GTCTGACGCCTTCCATTTCAC 59.535 52.381 0.00 0.00 0.00 3.18
4181 4361 1.071542 TCTGACGCCTTCCATTTCACA 59.928 47.619 0.00 0.00 0.00 3.58
4284 4464 3.488721 CCCCTGTTTGACGTCGATAGTAG 60.489 52.174 11.62 5.30 37.40 2.57
4285 4465 3.106672 CCTGTTTGACGTCGATAGTAGC 58.893 50.000 11.62 0.00 37.40 3.58
4286 4466 3.106672 CTGTTTGACGTCGATAGTAGCC 58.893 50.000 11.62 0.00 37.40 3.93
4288 4468 3.106672 GTTTGACGTCGATAGTAGCCTG 58.893 50.000 11.62 0.00 37.40 4.85
4289 4469 2.320745 TGACGTCGATAGTAGCCTGA 57.679 50.000 11.62 0.00 37.40 3.86
4291 4471 1.532007 GACGTCGATAGTAGCCTGAGG 59.468 57.143 0.00 0.00 37.40 3.86
4292 4472 0.875728 CGTCGATAGTAGCCTGAGGG 59.124 60.000 0.00 0.00 37.40 4.30
4364 4609 1.825622 GCCCTTAGCATGTCCCAGC 60.826 63.158 0.00 0.00 42.97 4.85
4365 4610 1.152881 CCCTTAGCATGTCCCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
4366 4611 1.152881 CCTTAGCATGTCCCAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
4367 4612 1.524621 CTTAGCATGTCCCAGCCCG 60.525 63.158 0.00 0.00 0.00 6.13
4368 4613 2.947938 CTTAGCATGTCCCAGCCCGG 62.948 65.000 0.00 0.00 0.00 5.73
4374 4619 4.717313 GTCCCAGCCCGGTGGTTC 62.717 72.222 11.76 1.30 35.60 3.62
4376 4621 4.722700 CCCAGCCCGGTGGTTCAG 62.723 72.222 11.76 0.00 35.60 3.02
4377 4622 3.636231 CCAGCCCGGTGGTTCAGA 61.636 66.667 0.00 0.00 32.32 3.27
4378 4623 2.046892 CAGCCCGGTGGTTCAGAG 60.047 66.667 0.00 0.00 0.00 3.35
4386 4637 2.285083 CGGTGGTTCAGAGTTTGTCAA 58.715 47.619 0.00 0.00 0.00 3.18
4407 4658 3.222173 TGTGTGTAAATCTGCCAGGTT 57.778 42.857 0.00 0.00 0.00 3.50
4450 4705 1.066358 CCTTTGTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
4451 4706 1.621814 CTTTGTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
4457 4712 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4459 4714 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4461 4716 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4463 4718 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4464 4719 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4465 4720 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4466 4721 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4467 4722 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4468 4723 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4469 4724 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4470 4725 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4471 4726 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
4497 4752 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
4498 4753 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
4499 4754 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
4500 4755 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4501 4756 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
4502 4757 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
4503 4758 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
4504 4759 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
4505 4760 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
4506 4761 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4526 8345 2.187958 TGGAACAGAGGGAGTACATGG 58.812 52.381 0.00 0.00 0.00 3.66
4558 8377 7.700022 TGTCTGTCTCTATCTCATCATATGG 57.300 40.000 2.13 0.00 0.00 2.74
4606 8427 2.475200 AAGTGTCTTTTCGTTGCTGC 57.525 45.000 0.00 0.00 0.00 5.25
4609 8430 2.032178 AGTGTCTTTTCGTTGCTGCTTC 59.968 45.455 0.00 0.00 0.00 3.86
4618 8439 1.148949 TTGCTGCTTCTGCCAGACA 59.851 52.632 0.00 0.00 38.71 3.41
4628 8449 2.276869 TGCCAGACAGAGCGTATGT 58.723 52.632 0.00 0.00 34.91 2.29
4629 8450 0.173481 TGCCAGACAGAGCGTATGTC 59.827 55.000 10.00 10.00 46.01 3.06
4630 8451 0.528684 GCCAGACAGAGCGTATGTCC 60.529 60.000 13.23 0.00 46.68 4.02
4631 8452 0.248661 CCAGACAGAGCGTATGTCCG 60.249 60.000 13.23 5.60 46.68 4.79
4648 8469 1.276989 TCCGCCGATACCTCTGTTTTT 59.723 47.619 0.00 0.00 0.00 1.94
4654 8477 3.372206 CCGATACCTCTGTTTTTGCTGAG 59.628 47.826 0.00 0.00 35.21 3.35
4658 8481 3.416156 ACCTCTGTTTTTGCTGAGATCC 58.584 45.455 0.00 0.00 36.82 3.36
4683 8517 1.656095 GAGAATTTGACAGCCGAGTCG 59.344 52.381 5.29 5.29 41.41 4.18
4726 8672 5.052481 TGATCATCATTAGAACTGCGAAGG 58.948 41.667 0.00 0.00 0.00 3.46
4727 8673 3.198068 TCATCATTAGAACTGCGAAGGC 58.802 45.455 0.00 0.00 40.52 4.35
4728 8674 1.640428 TCATTAGAACTGCGAAGGCG 58.360 50.000 0.00 0.00 44.10 5.52
4738 8684 3.698382 CGAAGGCGCTCTGATCAC 58.302 61.111 7.64 0.00 0.00 3.06
4739 8685 1.153765 CGAAGGCGCTCTGATCACA 60.154 57.895 7.64 0.00 0.00 3.58
4740 8686 1.144565 CGAAGGCGCTCTGATCACAG 61.145 60.000 7.64 0.00 44.66 3.66
4741 8687 1.427592 GAAGGCGCTCTGATCACAGC 61.428 60.000 12.55 12.55 43.17 4.40
4742 8688 2.125391 GGCGCTCTGATCACAGCA 60.125 61.111 20.93 0.00 43.17 4.41
4743 8689 2.172372 GGCGCTCTGATCACAGCAG 61.172 63.158 20.93 14.62 43.17 4.24
4744 8690 1.447489 GCGCTCTGATCACAGCAGT 60.447 57.895 20.93 0.00 43.17 4.40
4745 8691 1.018226 GCGCTCTGATCACAGCAGTT 61.018 55.000 20.93 0.00 43.17 3.16
4746 8692 0.997932 CGCTCTGATCACAGCAGTTC 59.002 55.000 20.93 0.00 43.17 3.01
4747 8693 1.670967 CGCTCTGATCACAGCAGTTCA 60.671 52.381 20.93 0.00 43.17 3.18
4748 8694 1.731160 GCTCTGATCACAGCAGTTCAC 59.269 52.381 17.07 0.00 43.17 3.18
4749 8695 2.869237 GCTCTGATCACAGCAGTTCACA 60.869 50.000 17.07 0.00 43.17 3.58
4750 8696 3.396560 CTCTGATCACAGCAGTTCACAA 58.603 45.455 0.00 0.00 43.17 3.33
4751 8697 3.807553 TCTGATCACAGCAGTTCACAAA 58.192 40.909 0.00 0.00 43.17 2.83
4752 8698 3.811497 TCTGATCACAGCAGTTCACAAAG 59.189 43.478 0.00 0.00 43.17 2.77
4753 8699 3.807553 TGATCACAGCAGTTCACAAAGA 58.192 40.909 0.00 0.00 0.00 2.52
4754 8700 4.198530 TGATCACAGCAGTTCACAAAGAA 58.801 39.130 0.00 0.00 0.00 2.52
4755 8701 4.639755 TGATCACAGCAGTTCACAAAGAAA 59.360 37.500 0.00 0.00 38.13 2.52
4756 8702 5.125257 TGATCACAGCAGTTCACAAAGAAAA 59.875 36.000 0.00 0.00 38.13 2.29
4757 8703 5.581126 TCACAGCAGTTCACAAAGAAAAT 57.419 34.783 0.00 0.00 38.13 1.82
4758 8704 5.342433 TCACAGCAGTTCACAAAGAAAATG 58.658 37.500 0.00 0.00 38.13 2.32
4759 8705 4.026310 CACAGCAGTTCACAAAGAAAATGC 60.026 41.667 0.00 0.00 45.04 3.56
4760 8706 4.114073 CAGCAGTTCACAAAGAAAATGCA 58.886 39.130 9.71 0.00 46.16 3.96
4761 8707 4.748102 CAGCAGTTCACAAAGAAAATGCAT 59.252 37.500 9.71 0.00 46.16 3.96
4762 8708 4.986659 AGCAGTTCACAAAGAAAATGCATC 59.013 37.500 0.00 0.00 46.16 3.91
4763 8709 4.746115 GCAGTTCACAAAGAAAATGCATCA 59.254 37.500 0.00 0.00 44.53 3.07
4764 8710 5.407387 GCAGTTCACAAAGAAAATGCATCAT 59.593 36.000 0.00 0.00 44.53 2.45
4765 8711 6.073440 GCAGTTCACAAAGAAAATGCATCATT 60.073 34.615 0.00 0.00 44.53 2.57
4766 8712 7.116662 GCAGTTCACAAAGAAAATGCATCATTA 59.883 33.333 0.00 0.00 44.53 1.90
4767 8713 8.644619 CAGTTCACAAAGAAAATGCATCATTAG 58.355 33.333 0.00 0.00 38.13 1.73
4768 8714 8.579006 AGTTCACAAAGAAAATGCATCATTAGA 58.421 29.630 0.00 0.00 38.13 2.10
4769 8715 9.195411 GTTCACAAAGAAAATGCATCATTAGAA 57.805 29.630 0.00 0.00 38.13 2.10
4770 8716 8.746922 TCACAAAGAAAATGCATCATTAGAAC 57.253 30.769 0.00 0.00 32.43 3.01
4771 8717 8.579006 TCACAAAGAAAATGCATCATTAGAACT 58.421 29.630 0.00 0.00 32.43 3.01
4772 8718 8.857216 CACAAAGAAAATGCATCATTAGAACTC 58.143 33.333 0.00 0.00 32.43 3.01
4773 8719 8.800332 ACAAAGAAAATGCATCATTAGAACTCT 58.200 29.630 0.00 0.00 32.43 3.24
4774 8720 9.073368 CAAAGAAAATGCATCATTAGAACTCTG 57.927 33.333 0.00 0.00 32.43 3.35
4802 8749 4.143194 CTGATCACAGCAGTTCACAAAG 57.857 45.455 0.00 0.00 37.33 2.77
4803 8750 3.807553 TGATCACAGCAGTTCACAAAGA 58.192 40.909 0.00 0.00 0.00 2.52
4804 8751 4.198530 TGATCACAGCAGTTCACAAAGAA 58.801 39.130 0.00 0.00 0.00 2.52
4805 8752 4.639755 TGATCACAGCAGTTCACAAAGAAA 59.360 37.500 0.00 0.00 38.13 2.52
4806 8753 5.125257 TGATCACAGCAGTTCACAAAGAAAA 59.875 36.000 0.00 0.00 38.13 2.29
4807 8754 5.581126 TCACAGCAGTTCACAAAGAAAAT 57.419 34.783 0.00 0.00 38.13 1.82
4808 8755 5.964758 TCACAGCAGTTCACAAAGAAAATT 58.035 33.333 0.00 0.00 38.13 1.82
4809 8756 6.035843 TCACAGCAGTTCACAAAGAAAATTC 58.964 36.000 0.00 0.00 38.13 2.17
4810 8757 6.038356 CACAGCAGTTCACAAAGAAAATTCT 58.962 36.000 0.00 0.00 38.13 2.40
4874 8821 1.401931 CGCAATTCTGGTTTGCTCCTG 60.402 52.381 6.80 0.00 45.67 3.86
4919 8866 7.117667 GCAACCGATTCCAAGTCATTTAAAATT 59.882 33.333 0.00 0.00 0.00 1.82
4928 8875 8.629158 TCCAAGTCATTTAAAATTCCATATCCG 58.371 33.333 0.00 0.00 0.00 4.18
4962 8909 1.969208 TGGAACAATGCCTGAATGCAA 59.031 42.857 0.00 0.00 45.84 4.08
4980 8927 3.057596 TGCAAAAGTCGAATGATCCCAAC 60.058 43.478 0.00 0.00 0.00 3.77
5004 8951 6.655003 ACCATGTAACGAATCAGATCAACTTT 59.345 34.615 0.00 0.00 0.00 2.66
5012 8959 6.073548 ACGAATCAGATCAACTTTGAAGACAC 60.074 38.462 0.00 0.00 41.13 3.67
5014 8962 7.360691 CGAATCAGATCAACTTTGAAGACACAT 60.361 37.037 0.00 0.00 41.13 3.21
5083 9034 5.437060 ACATATTGGACCACTATCAACACC 58.563 41.667 1.43 0.00 0.00 4.16
5138 9089 6.443849 TCCCATTAGTATCACCAGAGTCTTTT 59.556 38.462 0.00 0.00 0.00 2.27
5155 9106 3.137176 TCTTTTCCCCCTATGATGCAGAG 59.863 47.826 0.00 0.00 0.00 3.35
5268 9227 5.482526 TCAGGTTAACAGGAACATGCTAGTA 59.517 40.000 8.10 0.00 40.14 1.82
5269 9228 6.014070 TCAGGTTAACAGGAACATGCTAGTAA 60.014 38.462 8.10 0.00 40.14 2.24
5270 9229 6.653320 CAGGTTAACAGGAACATGCTAGTAAA 59.347 38.462 8.10 0.00 34.70 2.01
5271 9230 7.336931 CAGGTTAACAGGAACATGCTAGTAAAT 59.663 37.037 8.10 0.00 34.70 1.40
5272 9231 8.545472 AGGTTAACAGGAACATGCTAGTAAATA 58.455 33.333 8.10 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.452108 CCACGGCAGGGAGATTTCC 60.452 63.158 0.00 0.00 43.23 3.13
9 10 0.035439 TTCCACGGCAGGGAGATTTC 60.035 55.000 0.00 0.00 35.46 2.17
10 11 0.035056 CTTCCACGGCAGGGAGATTT 60.035 55.000 0.00 0.00 36.25 2.17
11 12 1.604378 CTTCCACGGCAGGGAGATT 59.396 57.895 0.00 0.00 36.25 2.40
12 13 2.370445 CCTTCCACGGCAGGGAGAT 61.370 63.158 2.90 0.00 36.25 2.75
13 14 3.003173 CCTTCCACGGCAGGGAGA 61.003 66.667 2.90 0.00 36.25 3.71
14 15 3.003173 TCCTTCCACGGCAGGGAG 61.003 66.667 1.70 0.00 35.46 4.30
15 16 2.822643 ATCTCCTTCCACGGCAGGGA 62.823 60.000 1.70 0.00 0.00 4.20
16 17 2.317149 GATCTCCTTCCACGGCAGGG 62.317 65.000 1.70 0.00 0.00 4.45
17 18 1.144936 GATCTCCTTCCACGGCAGG 59.855 63.158 0.00 0.00 0.00 4.85
18 19 0.103937 GAGATCTCCTTCCACGGCAG 59.896 60.000 12.00 0.00 0.00 4.85
19 20 0.614697 TGAGATCTCCTTCCACGGCA 60.615 55.000 20.03 0.00 0.00 5.69
20 21 0.755686 ATGAGATCTCCTTCCACGGC 59.244 55.000 20.03 0.00 0.00 5.68
21 22 3.616076 GCATATGAGATCTCCTTCCACGG 60.616 52.174 20.03 3.14 0.00 4.94
22 23 3.583806 GCATATGAGATCTCCTTCCACG 58.416 50.000 20.03 3.62 0.00 4.94
23 24 3.326006 TGGCATATGAGATCTCCTTCCAC 59.674 47.826 20.03 7.32 0.00 4.02
24 25 3.590714 TGGCATATGAGATCTCCTTCCA 58.409 45.455 20.03 15.49 0.00 3.53
25 26 4.224594 TCATGGCATATGAGATCTCCTTCC 59.775 45.833 20.03 13.34 0.00 3.46
26 27 5.417754 TCATGGCATATGAGATCTCCTTC 57.582 43.478 20.03 4.88 0.00 3.46
27 28 5.837770 TTCATGGCATATGAGATCTCCTT 57.162 39.130 20.03 10.06 0.00 3.36
28 29 5.837770 TTTCATGGCATATGAGATCTCCT 57.162 39.130 20.03 12.81 0.00 3.69
29 30 7.362747 GGAATTTTCATGGCATATGAGATCTCC 60.363 40.741 20.03 4.60 0.00 3.71
30 31 7.362747 GGGAATTTTCATGGCATATGAGATCTC 60.363 40.741 16.21 16.21 0.00 2.75
31 32 6.436532 GGGAATTTTCATGGCATATGAGATCT 59.563 38.462 6.97 0.00 0.00 2.75
32 33 6.350780 GGGGAATTTTCATGGCATATGAGATC 60.351 42.308 6.97 0.00 0.00 2.75
33 34 5.482878 GGGGAATTTTCATGGCATATGAGAT 59.517 40.000 6.97 0.00 0.00 2.75
34 35 4.834496 GGGGAATTTTCATGGCATATGAGA 59.166 41.667 6.97 0.00 0.00 3.27
35 36 4.020839 GGGGGAATTTTCATGGCATATGAG 60.021 45.833 6.97 0.00 0.00 2.90
36 37 3.903090 GGGGGAATTTTCATGGCATATGA 59.097 43.478 6.97 0.00 0.00 2.15
37 38 3.306225 CGGGGGAATTTTCATGGCATATG 60.306 47.826 0.00 0.00 0.00 1.78
38 39 2.899256 CGGGGGAATTTTCATGGCATAT 59.101 45.455 0.00 0.00 0.00 1.78
39 40 2.315176 CGGGGGAATTTTCATGGCATA 58.685 47.619 0.00 0.00 0.00 3.14
40 41 1.122227 CGGGGGAATTTTCATGGCAT 58.878 50.000 0.00 0.00 0.00 4.40
41 42 0.975040 CCGGGGGAATTTTCATGGCA 60.975 55.000 0.00 0.00 0.00 4.92
42 43 1.822615 CCGGGGGAATTTTCATGGC 59.177 57.895 0.00 0.00 0.00 4.40
43 44 0.687427 AGCCGGGGGAATTTTCATGG 60.687 55.000 2.18 0.00 0.00 3.66
44 45 0.461135 CAGCCGGGGGAATTTTCATG 59.539 55.000 2.18 0.00 0.00 3.07
45 46 0.687427 CCAGCCGGGGGAATTTTCAT 60.687 55.000 2.18 0.00 0.00 2.57
46 47 1.304879 CCAGCCGGGGGAATTTTCA 60.305 57.895 2.18 0.00 0.00 2.69
47 48 3.616086 CCAGCCGGGGGAATTTTC 58.384 61.111 2.18 0.00 0.00 2.29
65 66 1.835267 AAAACCGGGGGAGCAAACC 60.835 57.895 6.32 0.00 0.00 3.27
66 67 1.110518 TCAAAACCGGGGGAGCAAAC 61.111 55.000 6.32 0.00 0.00 2.93
67 68 0.178947 ATCAAAACCGGGGGAGCAAA 60.179 50.000 6.32 0.00 0.00 3.68
68 69 0.178947 AATCAAAACCGGGGGAGCAA 60.179 50.000 6.32 0.00 0.00 3.91
69 70 0.610785 GAATCAAAACCGGGGGAGCA 60.611 55.000 6.32 0.00 0.00 4.26
70 71 1.654023 CGAATCAAAACCGGGGGAGC 61.654 60.000 6.32 0.00 0.00 4.70
71 72 1.029947 CCGAATCAAAACCGGGGGAG 61.030 60.000 6.32 0.00 39.59 4.30
72 73 1.001887 CCGAATCAAAACCGGGGGA 60.002 57.895 6.32 0.00 39.59 4.81
73 74 2.706834 GCCGAATCAAAACCGGGGG 61.707 63.158 6.32 0.00 43.17 5.40
74 75 1.677633 AGCCGAATCAAAACCGGGG 60.678 57.895 6.32 0.00 43.17 5.73
75 76 1.506262 CAGCCGAATCAAAACCGGG 59.494 57.895 6.32 0.00 43.17 5.73
76 77 1.154035 GCAGCCGAATCAAAACCGG 60.154 57.895 0.00 0.00 45.51 5.28
77 78 1.083489 TAGCAGCCGAATCAAAACCG 58.917 50.000 0.00 0.00 0.00 4.44
78 79 1.132453 GGTAGCAGCCGAATCAAAACC 59.868 52.381 0.00 0.00 0.00 3.27
79 80 1.810151 TGGTAGCAGCCGAATCAAAAC 59.190 47.619 0.00 0.00 0.00 2.43
80 81 2.192664 TGGTAGCAGCCGAATCAAAA 57.807 45.000 0.00 0.00 0.00 2.44
81 82 2.192664 TTGGTAGCAGCCGAATCAAA 57.807 45.000 0.00 0.00 0.00 2.69
82 83 2.192664 TTTGGTAGCAGCCGAATCAA 57.807 45.000 0.00 0.00 0.00 2.57
83 84 2.418368 ATTTGGTAGCAGCCGAATCA 57.582 45.000 6.30 0.00 37.98 2.57
84 85 3.304057 GCTAATTTGGTAGCAGCCGAATC 60.304 47.826 11.10 0.00 44.94 2.52
85 86 2.618709 GCTAATTTGGTAGCAGCCGAAT 59.381 45.455 6.30 6.30 44.94 3.34
86 87 2.014128 GCTAATTTGGTAGCAGCCGAA 58.986 47.619 0.00 2.30 44.94 4.30
87 88 1.663695 GCTAATTTGGTAGCAGCCGA 58.336 50.000 0.00 0.00 44.94 5.54
88 89 0.663153 GGCTAATTTGGTAGCAGCCG 59.337 55.000 6.40 0.00 46.98 5.52
89 90 1.032794 GGGCTAATTTGGTAGCAGCC 58.967 55.000 12.40 12.40 46.98 4.85
90 91 2.058593 AGGGCTAATTTGGTAGCAGC 57.941 50.000 6.55 0.00 46.98 5.25
91 92 5.507985 GCATTTAGGGCTAATTTGGTAGCAG 60.508 44.000 6.55 0.00 46.98 4.24
92 93 4.340950 GCATTTAGGGCTAATTTGGTAGCA 59.659 41.667 6.55 0.00 46.98 3.49
93 94 4.340950 TGCATTTAGGGCTAATTTGGTAGC 59.659 41.667 0.00 0.00 44.87 3.58
94 95 5.359576 TGTGCATTTAGGGCTAATTTGGTAG 59.640 40.000 0.00 0.00 0.00 3.18
95 96 5.265191 TGTGCATTTAGGGCTAATTTGGTA 58.735 37.500 0.00 0.00 0.00 3.25
96 97 4.093011 TGTGCATTTAGGGCTAATTTGGT 58.907 39.130 0.00 0.00 0.00 3.67
97 98 4.734398 TGTGCATTTAGGGCTAATTTGG 57.266 40.909 0.00 0.00 0.00 3.28
98 99 4.977963 CGATGTGCATTTAGGGCTAATTTG 59.022 41.667 0.00 0.00 0.00 2.32
99 100 4.499696 GCGATGTGCATTTAGGGCTAATTT 60.500 41.667 0.00 0.00 45.45 1.82
100 101 3.004734 GCGATGTGCATTTAGGGCTAATT 59.995 43.478 0.00 0.00 45.45 1.40
101 102 2.554032 GCGATGTGCATTTAGGGCTAAT 59.446 45.455 0.00 0.00 45.45 1.73
102 103 1.946768 GCGATGTGCATTTAGGGCTAA 59.053 47.619 0.00 0.00 45.45 3.09
103 104 1.593196 GCGATGTGCATTTAGGGCTA 58.407 50.000 0.00 0.00 45.45 3.93
104 105 2.408333 GCGATGTGCATTTAGGGCT 58.592 52.632 0.00 0.00 45.45 5.19
143 144 2.800544 CCCGGTGCTTGTATTTATCTCG 59.199 50.000 0.00 0.00 0.00 4.04
162 163 1.981256 TTCAGCAAGGTTCAAGTCCC 58.019 50.000 0.00 0.00 0.00 4.46
163 164 5.705609 TTAATTCAGCAAGGTTCAAGTCC 57.294 39.130 0.00 0.00 0.00 3.85
191 192 6.887545 ACAACGGATGGTTAAAAGGATAATGA 59.112 34.615 0.00 0.00 36.49 2.57
202 203 5.768662 TGGACAAAATACAACGGATGGTTAA 59.231 36.000 0.00 0.00 36.49 2.01
231 232 3.482472 GCTAGTACGATGTCGATGTGTTG 59.518 47.826 9.67 0.00 43.02 3.33
437 453 3.055747 GGAGAAGGAAGAAACTGACGGAT 60.056 47.826 0.00 0.00 0.00 4.18
438 454 2.299297 GGAGAAGGAAGAAACTGACGGA 59.701 50.000 0.00 0.00 0.00 4.69
520 542 3.461773 GGCTCAGTCTGGCGCCTA 61.462 66.667 29.70 13.50 39.42 3.93
530 552 2.644212 CGGTCAGAGCTGGCTCAGT 61.644 63.158 22.21 2.26 44.99 3.41
533 555 4.828925 GGCGGTCAGAGCTGGCTC 62.829 72.222 14.02 14.02 43.03 4.70
690 718 1.626825 ACCTCGATTTTTCTTCCGGGA 59.373 47.619 0.00 0.00 0.00 5.14
691 719 2.109425 ACCTCGATTTTTCTTCCGGG 57.891 50.000 0.00 0.00 0.00 5.73
700 728 6.266786 AGGAATGTTAAACCAACCTCGATTTT 59.733 34.615 0.00 0.00 36.20 1.82
703 731 4.918588 AGGAATGTTAAACCAACCTCGAT 58.081 39.130 0.00 0.00 36.20 3.59
720 748 2.388232 GGACGAACGCGCAAGGAAT 61.388 57.895 5.73 0.00 42.48 3.01
764 792 2.095008 TCGCTCATGAACAGAGTGACTC 60.095 50.000 3.98 3.98 44.94 3.36
782 810 0.734253 AGACAGAATCGCACACTCGC 60.734 55.000 0.00 0.00 0.00 5.03
785 813 2.614779 CATCAGACAGAATCGCACACT 58.385 47.619 0.00 0.00 0.00 3.55
821 849 1.134907 GGCGAACGAACCTCCTATGAA 60.135 52.381 0.00 0.00 0.00 2.57
929 963 0.178533 AAACACCTCGGGAACAACGA 59.821 50.000 0.00 0.00 38.79 3.85
970 1004 1.888436 ATGAACCGGCGCTCTCTTGA 61.888 55.000 7.64 0.00 0.00 3.02
1275 1312 0.037882 CCGTCTTCTTGCTCAGCTCA 60.038 55.000 0.00 0.00 0.00 4.26
1452 1489 3.194116 CCATGTTAGCTGGCAAGTCAATT 59.806 43.478 0.00 0.00 0.00 2.32
1575 1615 3.592059 CAAATGACTTGCCATGAAAGGG 58.408 45.455 11.39 0.00 43.76 3.95
1722 1762 8.103305 ACAACTTTATCAGTTACACCATCTGAT 58.897 33.333 10.84 10.84 44.60 2.90
1746 1786 5.808366 TTCTCTTCTGCCTTCTTTCTACA 57.192 39.130 0.00 0.00 0.00 2.74
1885 1926 1.057636 CACAAAGCTTTGATGCTGCG 58.942 50.000 38.78 15.51 43.24 5.18
1964 2012 9.193806 ACCTAATGATATTCTTGCAATTTGACT 57.806 29.630 0.00 0.00 0.00 3.41
2238 2288 0.969149 CTACTCCAGTGGCACAGTCA 59.031 55.000 21.41 0.00 41.96 3.41
2304 2354 8.159344 AGAATGCACTAGGTTATTGCTATTTC 57.841 34.615 0.00 5.09 35.62 2.17
2306 2356 8.432805 AGTAGAATGCACTAGGTTATTGCTATT 58.567 33.333 0.00 2.98 35.62 1.73
2439 2489 4.848562 AAAAGAAGGGGCGAAAAGTAAG 57.151 40.909 0.00 0.00 0.00 2.34
2568 2625 6.204882 CCCAAGTAGAAAGAAGTTGAACGATT 59.795 38.462 0.00 0.00 30.30 3.34
2585 2642 7.663081 ACACATGATATTATTGAGCCCAAGTAG 59.337 37.037 0.00 0.00 35.48 2.57
2647 2705 2.775384 TGGGTGGTGGTACTATGGAATC 59.225 50.000 0.00 0.00 0.00 2.52
2660 2718 2.205022 AATGAGATGTGTGGGTGGTG 57.795 50.000 0.00 0.00 0.00 4.17
2673 2731 5.586243 GGTCTGCAAAGCATACTAAATGAGA 59.414 40.000 7.32 0.00 38.13 3.27
2687 2745 7.928167 TGACAATATAGATACAGGTCTGCAAAG 59.072 37.037 0.00 0.00 0.00 2.77
2722 2780 7.716799 AAAAAGTAGCAATGAACATATGGGA 57.283 32.000 7.80 0.00 0.00 4.37
2773 2832 4.994852 GTGTCTGTCAGCATGGTAACTAAA 59.005 41.667 0.00 0.00 36.16 1.85
2797 2856 4.494350 ACAAACAATGAGATCACTGCAC 57.506 40.909 0.00 0.00 0.00 4.57
2825 2884 7.604164 ACATAGCCTCCAATAGATATTTGAACG 59.396 37.037 0.00 0.00 0.00 3.95
2854 2913 9.463443 AAAAATAACTTTGAGATTCCACTTTCG 57.537 29.630 0.00 0.00 0.00 3.46
2891 2950 6.072452 AGTCAATGCCAAAACTTAGTTAGCTC 60.072 38.462 13.27 0.32 0.00 4.09
2892 2951 5.770162 AGTCAATGCCAAAACTTAGTTAGCT 59.230 36.000 13.27 0.00 0.00 3.32
2893 2952 6.013842 AGTCAATGCCAAAACTTAGTTAGC 57.986 37.500 0.00 3.04 0.00 3.09
2918 2977 4.574599 AAGAAAGTGTGGCACAATCTTC 57.425 40.909 26.19 24.56 44.16 2.87
2919 2978 5.359576 TGTAAAGAAAGTGTGGCACAATCTT 59.640 36.000 26.19 26.19 44.16 2.40
2920 2979 4.887071 TGTAAAGAAAGTGTGGCACAATCT 59.113 37.500 23.90 21.49 44.16 2.40
2921 2980 5.181690 TGTAAAGAAAGTGTGGCACAATC 57.818 39.130 23.90 19.65 44.16 2.67
2922 2981 4.037923 CCTGTAAAGAAAGTGTGGCACAAT 59.962 41.667 23.90 19.81 44.16 2.71
2923 2982 3.380004 CCTGTAAAGAAAGTGTGGCACAA 59.620 43.478 23.90 3.54 44.16 3.33
2929 2988 2.582052 TGGCCCTGTAAAGAAAGTGTG 58.418 47.619 0.00 0.00 0.00 3.82
2937 2996 3.426615 TGGTATGTTTGGCCCTGTAAAG 58.573 45.455 0.00 0.00 0.00 1.85
2944 3003 7.954666 ATATACATTATGGTATGTTTGGCCC 57.045 36.000 0.00 0.00 39.39 5.80
2973 3032 4.770010 CCAAAAACTAGCCCCATTCAGTTA 59.230 41.667 0.00 0.00 31.20 2.24
3134 3193 5.718724 TCACCATGCAAAACATTGACATA 57.281 34.783 0.00 0.00 36.64 2.29
3167 3226 2.282701 AAAATTGCTGTAGCCATGCG 57.717 45.000 0.80 0.00 41.18 4.73
3179 3238 8.876275 TTCTGCTTCCATATCATTAAAATTGC 57.124 30.769 0.00 0.00 0.00 3.56
3226 3285 4.228824 AGACAAACCCCACTAGTCAACTA 58.771 43.478 0.00 0.00 0.00 2.24
3227 3286 3.046374 AGACAAACCCCACTAGTCAACT 58.954 45.455 0.00 0.00 0.00 3.16
3228 3287 3.487120 AGACAAACCCCACTAGTCAAC 57.513 47.619 0.00 0.00 0.00 3.18
3229 3288 8.063153 TCTATATAGACAAACCCCACTAGTCAA 58.937 37.037 8.44 0.00 0.00 3.18
3230 3289 7.589081 TCTATATAGACAAACCCCACTAGTCA 58.411 38.462 8.44 0.00 0.00 3.41
3231 3290 8.653036 ATCTATATAGACAAACCCCACTAGTC 57.347 38.462 14.71 0.00 34.72 2.59
3257 3316 9.787532 GTACAACATATGTGCTTTCAACAATAT 57.212 29.630 9.63 0.00 43.77 1.28
3309 3369 9.095065 CCGCATTGTTAACTAATAAGAACTACT 57.905 33.333 7.22 0.00 30.41 2.57
3335 3395 0.807496 GGCACTGCTGAAATCTCACC 59.193 55.000 0.00 0.00 0.00 4.02
3350 3410 4.389374 TGCTTATTAGGAATAGCAGGCAC 58.611 43.478 0.00 0.00 0.00 5.01
3352 3412 4.646572 ACTGCTTATTAGGAATAGCAGGC 58.353 43.478 22.34 6.50 42.86 4.85
3354 3414 7.559590 ACAAACTGCTTATTAGGAATAGCAG 57.440 36.000 18.36 18.36 43.44 4.24
3417 3477 0.603065 TTGCTACGCTGCAGAGAAGA 59.397 50.000 25.03 7.78 44.27 2.87
3425 3485 4.536364 TCTTAATGAATTGCTACGCTGC 57.464 40.909 0.00 0.00 0.00 5.25
3429 3489 5.911280 CCAAGCATCTTAATGAATTGCTACG 59.089 40.000 1.76 0.00 42.50 3.51
3468 3528 3.450457 TCAGTTTTGACCAACCAAAGCAT 59.550 39.130 0.00 0.00 38.95 3.79
3480 3540 2.355756 TCAGCAGCAACTCAGTTTTGAC 59.644 45.455 0.00 0.00 0.00 3.18
3489 3549 4.698583 ATTCAATTCTCAGCAGCAACTC 57.301 40.909 0.00 0.00 0.00 3.01
3547 3622 3.890147 ACCTCTTACTCGCCAAGTATAGG 59.110 47.826 14.93 14.93 43.40 2.57
3563 3638 6.069381 AGGGAAGCAATTCTATTACACCTCTT 60.069 38.462 0.00 0.00 0.00 2.85
3566 3641 5.044846 ACAGGGAAGCAATTCTATTACACCT 60.045 40.000 0.00 0.00 0.00 4.00
3567 3642 5.193679 ACAGGGAAGCAATTCTATTACACC 58.806 41.667 0.00 0.00 0.00 4.16
3591 3666 3.329386 GAGAGCTACTGTGCAATTGTGA 58.671 45.455 7.40 0.00 34.99 3.58
3592 3667 2.417933 GGAGAGCTACTGTGCAATTGTG 59.582 50.000 7.40 0.00 34.99 3.33
3593 3668 2.038952 TGGAGAGCTACTGTGCAATTGT 59.961 45.455 7.40 0.00 34.99 2.71
3595 3670 3.641434 ATGGAGAGCTACTGTGCAATT 57.359 42.857 0.00 0.00 28.25 2.32
3596 3671 3.452264 TGTATGGAGAGCTACTGTGCAAT 59.548 43.478 0.00 0.00 28.25 3.56
3597 3672 2.831526 TGTATGGAGAGCTACTGTGCAA 59.168 45.455 0.00 0.00 28.25 4.08
3598 3673 2.456577 TGTATGGAGAGCTACTGTGCA 58.543 47.619 0.00 0.00 34.99 4.57
3600 3675 5.528043 AGATTGTATGGAGAGCTACTGTG 57.472 43.478 0.00 0.00 0.00 3.66
3601 3676 7.661536 TTTAGATTGTATGGAGAGCTACTGT 57.338 36.000 0.00 0.00 0.00 3.55
3602 3677 8.948631 TTTTTAGATTGTATGGAGAGCTACTG 57.051 34.615 0.00 0.00 0.00 2.74
3603 3678 9.553064 CATTTTTAGATTGTATGGAGAGCTACT 57.447 33.333 0.00 0.00 0.00 2.57
3604 3679 9.547753 TCATTTTTAGATTGTATGGAGAGCTAC 57.452 33.333 0.00 0.00 0.00 3.58
3606 3681 9.466497 TTTCATTTTTAGATTGTATGGAGAGCT 57.534 29.630 0.00 0.00 0.00 4.09
3610 3685 9.586435 GGGTTTTCATTTTTAGATTGTATGGAG 57.414 33.333 0.00 0.00 0.00 3.86
3611 3686 9.094578 TGGGTTTTCATTTTTAGATTGTATGGA 57.905 29.630 0.00 0.00 0.00 3.41
3612 3687 9.369904 CTGGGTTTTCATTTTTAGATTGTATGG 57.630 33.333 0.00 0.00 0.00 2.74
3613 3688 9.927668 ACTGGGTTTTCATTTTTAGATTGTATG 57.072 29.630 0.00 0.00 0.00 2.39
3657 3733 0.178926 TCTGTTGGGTAACTCCGGGA 60.179 55.000 0.00 0.00 37.68 5.14
3660 3736 1.737793 GCAATCTGTTGGGTAACTCCG 59.262 52.381 0.00 0.00 37.68 4.63
3730 3806 5.065988 GTGGTGATCTGTTTGTTAAGTGTGT 59.934 40.000 0.00 0.00 0.00 3.72
3754 3830 8.029642 ACAAAGTCTAACGTATTCATTTCCAG 57.970 34.615 0.00 0.00 0.00 3.86
3768 3844 6.862090 ACGATTGAGTGAGTACAAAGTCTAAC 59.138 38.462 0.00 0.00 0.00 2.34
3787 3863 1.393196 TGCTTCACGCATGTACGATTG 59.607 47.619 0.00 0.00 45.47 2.67
3844 3922 7.264221 TCAAAATACAGAAAACACAAGCACAT 58.736 30.769 0.00 0.00 0.00 3.21
3846 3924 6.751888 ACTCAAAATACAGAAAACACAAGCAC 59.248 34.615 0.00 0.00 0.00 4.40
3932 4010 8.789762 TGATTAATATCACCAGCATCATCTTTG 58.210 33.333 0.00 0.00 35.87 2.77
3989 4067 8.397575 TCTCAGTATCATAGTGTTAGGCTAAG 57.602 38.462 7.33 0.00 0.00 2.18
4002 4080 6.206829 ACGACCGATGAAATCTCAGTATCATA 59.793 38.462 0.00 0.00 42.58 2.15
4021 4113 0.511221 CAGCCACAAAGTAACGACCG 59.489 55.000 0.00 0.00 0.00 4.79
4073 4165 6.629128 TGTTTGCTGAATTGAAGAACAAGAA 58.371 32.000 0.00 0.00 42.02 2.52
4104 4196 4.460382 ACTTAGCATCCAAATGAAGTGTGG 59.540 41.667 0.00 0.00 31.94 4.17
4113 4205 5.277857 AGCTACGTACTTAGCATCCAAAT 57.722 39.130 27.34 7.50 46.04 2.32
4144 4324 6.815641 GGCGTCAGACATGAGATGAATATAAT 59.184 38.462 0.00 0.00 35.66 1.28
4155 4335 0.247460 TGGAAGGCGTCAGACATGAG 59.753 55.000 0.00 0.00 35.66 2.90
4180 4360 7.395190 TCATGTCCAACTCCTGAAATTATTG 57.605 36.000 0.00 0.00 0.00 1.90
4181 4361 7.835682 TCATCATGTCCAACTCCTGAAATTATT 59.164 33.333 0.00 0.00 0.00 1.40
4288 4468 0.678048 CAAGCTACCAACTGCCCCTC 60.678 60.000 0.00 0.00 0.00 4.30
4289 4469 1.380302 CAAGCTACCAACTGCCCCT 59.620 57.895 0.00 0.00 0.00 4.79
4291 4471 0.960861 GGACAAGCTACCAACTGCCC 60.961 60.000 0.00 0.00 0.00 5.36
4292 4472 0.960861 GGGACAAGCTACCAACTGCC 60.961 60.000 6.80 0.00 0.00 4.85
4294 4474 1.813513 CTGGGACAAGCTACCAACTG 58.186 55.000 6.80 0.00 38.70 3.16
4296 4476 0.960861 GGCTGGGACAAGCTACCAAC 60.961 60.000 0.00 0.57 38.70 3.77
4298 4478 2.602676 GGGCTGGGACAAGCTACCA 61.603 63.158 0.00 3.64 38.70 3.25
4299 4479 2.272471 GGGCTGGGACAAGCTACC 59.728 66.667 0.00 0.00 38.70 3.18
4364 4609 0.179029 ACAAACTCTGAACCACCGGG 60.179 55.000 6.32 0.00 41.29 5.73
4365 4610 1.226746 GACAAACTCTGAACCACCGG 58.773 55.000 0.00 0.00 0.00 5.28
4366 4611 1.948104 TGACAAACTCTGAACCACCG 58.052 50.000 0.00 0.00 0.00 4.94
4367 4612 3.632145 ACATTGACAAACTCTGAACCACC 59.368 43.478 0.00 0.00 0.00 4.61
4368 4613 4.096382 ACACATTGACAAACTCTGAACCAC 59.904 41.667 0.00 0.00 0.00 4.16
4369 4614 4.096231 CACACATTGACAAACTCTGAACCA 59.904 41.667 0.00 0.00 0.00 3.67
4370 4615 4.096382 ACACACATTGACAAACTCTGAACC 59.904 41.667 0.00 0.00 0.00 3.62
4373 4618 6.993786 TTTACACACATTGACAAACTCTGA 57.006 33.333 0.00 0.00 0.00 3.27
4374 4619 7.588854 CAGATTTACACACATTGACAAACTCTG 59.411 37.037 0.00 0.00 0.00 3.35
4375 4620 7.642669 CAGATTTACACACATTGACAAACTCT 58.357 34.615 0.00 0.00 0.00 3.24
4376 4621 6.360681 GCAGATTTACACACATTGACAAACTC 59.639 38.462 0.00 0.00 0.00 3.01
4377 4622 6.208644 GCAGATTTACACACATTGACAAACT 58.791 36.000 0.00 0.00 0.00 2.66
4378 4623 5.402270 GGCAGATTTACACACATTGACAAAC 59.598 40.000 0.00 0.00 0.00 2.93
4386 4637 3.439857 ACCTGGCAGATTTACACACAT 57.560 42.857 17.94 0.00 0.00 3.21
4471 4726 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
4472 4727 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
4473 4728 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
4474 4729 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
4475 4730 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
4477 4732 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
4479 4734 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
4480 4735 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4481 4736 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4482 4737 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4483 4738 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4484 4739 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4485 4740 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4486 4741 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4487 4742 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
4488 4743 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
4490 4745 5.710099 TCTGTTCCAAAATAGATGACCCAAC 59.290 40.000 0.00 0.00 28.72 3.77
4491 4746 5.886609 TCTGTTCCAAAATAGATGACCCAA 58.113 37.500 0.00 0.00 28.72 4.12
4492 4747 5.500234 CTCTGTTCCAAAATAGATGACCCA 58.500 41.667 0.00 0.00 32.88 4.51
4494 4749 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
4495 4750 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
4496 4751 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
4497 4752 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
4498 4753 6.443849 TGTACTCCCTCTGTTCCAAAATAGAT 59.556 38.462 0.00 0.00 32.88 1.98
4499 4754 5.783360 TGTACTCCCTCTGTTCCAAAATAGA 59.217 40.000 0.00 0.00 32.42 1.98
4500 4755 6.049955 TGTACTCCCTCTGTTCCAAAATAG 57.950 41.667 0.00 0.00 0.00 1.73
4501 4756 6.414732 CATGTACTCCCTCTGTTCCAAAATA 58.585 40.000 0.00 0.00 0.00 1.40
4502 4757 4.993705 TGTACTCCCTCTGTTCCAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
4503 4758 4.506625 CCATGTACTCCCTCTGTTCCAAAA 60.507 45.833 0.00 0.00 0.00 2.44
4504 4759 3.009033 CCATGTACTCCCTCTGTTCCAAA 59.991 47.826 0.00 0.00 0.00 3.28
4505 4760 2.571653 CCATGTACTCCCTCTGTTCCAA 59.428 50.000 0.00 0.00 0.00 3.53
4506 4761 2.187958 CCATGTACTCCCTCTGTTCCA 58.812 52.381 0.00 0.00 0.00 3.53
4557 8376 0.034574 TGGCCACATACATGACCACC 60.035 55.000 0.00 0.00 0.00 4.61
4558 8377 1.677576 CATGGCCACATACATGACCAC 59.322 52.381 8.16 0.00 45.55 4.16
4609 8430 0.174389 ACATACGCTCTGTCTGGCAG 59.826 55.000 8.58 8.58 46.34 4.85
4622 8443 0.109873 GAGGTATCGGCGGACATACG 60.110 60.000 7.21 0.00 0.00 3.06
4623 8444 1.068472 CAGAGGTATCGGCGGACATAC 60.068 57.143 7.21 7.88 0.00 2.39
4624 8445 1.244816 CAGAGGTATCGGCGGACATA 58.755 55.000 7.21 0.00 0.00 2.29
4625 8446 0.755698 ACAGAGGTATCGGCGGACAT 60.756 55.000 7.21 2.95 0.00 3.06
4626 8447 0.968901 AACAGAGGTATCGGCGGACA 60.969 55.000 7.21 0.00 0.00 4.02
4627 8448 0.175073 AAACAGAGGTATCGGCGGAC 59.825 55.000 7.21 5.61 0.00 4.79
4628 8449 0.899720 AAAACAGAGGTATCGGCGGA 59.100 50.000 7.21 0.00 0.00 5.54
4629 8450 1.396996 CAAAAACAGAGGTATCGGCGG 59.603 52.381 7.21 0.00 0.00 6.13
4630 8451 1.202031 GCAAAAACAGAGGTATCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
4631 8452 2.084546 AGCAAAAACAGAGGTATCGGC 58.915 47.619 0.00 0.00 0.00 5.54
4632 8453 3.334691 TCAGCAAAAACAGAGGTATCGG 58.665 45.455 0.00 0.00 0.00 4.18
4633 8454 4.245660 TCTCAGCAAAAACAGAGGTATCG 58.754 43.478 0.00 0.00 0.00 2.92
4634 8455 5.295540 GGATCTCAGCAAAAACAGAGGTATC 59.704 44.000 0.00 0.00 0.00 2.24
4635 8456 5.189180 GGATCTCAGCAAAAACAGAGGTAT 58.811 41.667 0.00 0.00 0.00 2.73
4636 8457 4.579869 GGATCTCAGCAAAAACAGAGGTA 58.420 43.478 0.00 0.00 0.00 3.08
4648 8469 0.614697 TTCTCACCCGGATCTCAGCA 60.615 55.000 0.73 0.00 0.00 4.41
4654 8477 2.939103 CTGTCAAATTCTCACCCGGATC 59.061 50.000 0.73 0.00 0.00 3.36
4658 8481 0.804989 GGCTGTCAAATTCTCACCCG 59.195 55.000 0.00 0.00 0.00 5.28
4683 8517 6.864685 TGATCAAAACTTCATGCTGATTTCAC 59.135 34.615 0.00 0.00 0.00 3.18
4703 8537 5.052481 CCTTCGCAGTTCTAATGATGATCA 58.948 41.667 0.00 0.00 0.00 2.92
4704 8538 4.084118 GCCTTCGCAGTTCTAATGATGATC 60.084 45.833 0.00 0.00 34.03 2.92
4705 8539 3.812053 GCCTTCGCAGTTCTAATGATGAT 59.188 43.478 0.00 0.00 34.03 2.45
4706 8540 3.198068 GCCTTCGCAGTTCTAATGATGA 58.802 45.455 0.00 0.00 34.03 2.92
4728 8674 1.731160 GTGAACTGCTGTGATCAGAGC 59.269 52.381 32.12 32.12 46.64 4.09
4729 8675 3.036075 TGTGAACTGCTGTGATCAGAG 57.964 47.619 15.36 15.36 43.76 3.35
4730 8676 3.473923 TTGTGAACTGCTGTGATCAGA 57.526 42.857 0.00 0.00 43.76 3.27
4732 8678 3.807553 TCTTTGTGAACTGCTGTGATCA 58.192 40.909 0.00 0.00 0.00 2.92
4733 8679 4.818534 TTCTTTGTGAACTGCTGTGATC 57.181 40.909 0.00 0.00 0.00 2.92
4734 8680 5.581126 TTTTCTTTGTGAACTGCTGTGAT 57.419 34.783 0.00 0.00 33.88 3.06
4735 8681 5.342433 CATTTTCTTTGTGAACTGCTGTGA 58.658 37.500 0.00 0.00 33.88 3.58
4736 8682 4.026310 GCATTTTCTTTGTGAACTGCTGTG 60.026 41.667 0.00 0.00 39.02 3.66
4737 8683 4.114794 GCATTTTCTTTGTGAACTGCTGT 58.885 39.130 0.00 0.00 39.02 4.40
4738 8684 4.114073 TGCATTTTCTTTGTGAACTGCTG 58.886 39.130 11.03 0.00 40.96 4.41
4739 8685 4.389890 TGCATTTTCTTTGTGAACTGCT 57.610 36.364 11.03 0.00 40.96 4.24
4740 8686 4.746115 TGATGCATTTTCTTTGTGAACTGC 59.254 37.500 0.00 0.00 40.84 4.40
4741 8687 7.416154 AATGATGCATTTTCTTTGTGAACTG 57.584 32.000 0.00 0.00 33.88 3.16
4742 8688 8.579006 TCTAATGATGCATTTTCTTTGTGAACT 58.421 29.630 0.00 0.00 35.54 3.01
4743 8689 8.746922 TCTAATGATGCATTTTCTTTGTGAAC 57.253 30.769 0.00 0.00 35.54 3.18
4744 8690 9.195411 GTTCTAATGATGCATTTTCTTTGTGAA 57.805 29.630 0.00 1.66 35.54 3.18
4745 8691 8.579006 AGTTCTAATGATGCATTTTCTTTGTGA 58.421 29.630 0.00 0.00 35.54 3.58
4746 8692 8.752766 AGTTCTAATGATGCATTTTCTTTGTG 57.247 30.769 0.00 0.00 35.54 3.33
4747 8693 8.800332 AGAGTTCTAATGATGCATTTTCTTTGT 58.200 29.630 0.00 0.00 35.54 2.83
4748 8694 9.073368 CAGAGTTCTAATGATGCATTTTCTTTG 57.927 33.333 0.00 0.00 35.54 2.77
4749 8695 9.017509 TCAGAGTTCTAATGATGCATTTTCTTT 57.982 29.630 0.00 0.00 35.54 2.52
4750 8696 8.571461 TCAGAGTTCTAATGATGCATTTTCTT 57.429 30.769 0.00 0.00 35.54 2.52
4751 8697 8.571461 TTCAGAGTTCTAATGATGCATTTTCT 57.429 30.769 0.00 0.00 35.54 2.52
4752 8698 7.914346 CCTTCAGAGTTCTAATGATGCATTTTC 59.086 37.037 0.00 0.00 35.54 2.29
4753 8699 7.630082 GCCTTCAGAGTTCTAATGATGCATTTT 60.630 37.037 0.00 0.52 35.54 1.82
4754 8700 6.183360 GCCTTCAGAGTTCTAATGATGCATTT 60.183 38.462 0.00 0.00 35.54 2.32
4755 8701 5.298777 GCCTTCAGAGTTCTAATGATGCATT 59.701 40.000 0.00 0.00 37.80 3.56
4756 8702 4.820716 GCCTTCAGAGTTCTAATGATGCAT 59.179 41.667 0.00 0.00 0.00 3.96
4757 8703 4.194640 GCCTTCAGAGTTCTAATGATGCA 58.805 43.478 0.00 0.00 0.00 3.96
4758 8704 3.247173 CGCCTTCAGAGTTCTAATGATGC 59.753 47.826 0.00 0.00 0.00 3.91
4759 8705 3.247173 GCGCCTTCAGAGTTCTAATGATG 59.753 47.826 0.00 0.00 0.00 3.07
4760 8706 3.133721 AGCGCCTTCAGAGTTCTAATGAT 59.866 43.478 2.29 0.00 0.00 2.45
4761 8707 2.497675 AGCGCCTTCAGAGTTCTAATGA 59.502 45.455 2.29 0.00 0.00 2.57
4762 8708 2.606725 CAGCGCCTTCAGAGTTCTAATG 59.393 50.000 2.29 0.00 0.00 1.90
4763 8709 2.497675 TCAGCGCCTTCAGAGTTCTAAT 59.502 45.455 2.29 0.00 0.00 1.73
4764 8710 1.893137 TCAGCGCCTTCAGAGTTCTAA 59.107 47.619 2.29 0.00 0.00 2.10
4765 8711 1.545841 TCAGCGCCTTCAGAGTTCTA 58.454 50.000 2.29 0.00 0.00 2.10
4766 8712 0.901124 ATCAGCGCCTTCAGAGTTCT 59.099 50.000 2.29 0.00 0.00 3.01
4767 8713 1.285578 GATCAGCGCCTTCAGAGTTC 58.714 55.000 2.29 0.00 0.00 3.01
4768 8714 0.610174 TGATCAGCGCCTTCAGAGTT 59.390 50.000 2.29 0.00 0.00 3.01
4769 8715 0.108424 GTGATCAGCGCCTTCAGAGT 60.108 55.000 2.29 0.00 0.00 3.24
4770 8716 0.108472 TGTGATCAGCGCCTTCAGAG 60.108 55.000 2.29 0.00 0.00 3.35
4771 8717 0.108472 CTGTGATCAGCGCCTTCAGA 60.108 55.000 2.29 2.41 34.79 3.27
4772 8718 2.381109 CTGTGATCAGCGCCTTCAG 58.619 57.895 2.29 0.83 34.79 3.02
4773 8719 4.604114 CTGTGATCAGCGCCTTCA 57.396 55.556 2.29 1.39 34.79 3.02
4808 8755 9.620660 GTTTTGTTTACTTCAACTTCTCAAAGA 57.379 29.630 0.00 0.00 36.30 2.52
4809 8756 9.405587 TGTTTTGTTTACTTCAACTTCTCAAAG 57.594 29.630 0.00 0.00 38.54 2.77
4810 8757 9.921637 ATGTTTTGTTTACTTCAACTTCTCAAA 57.078 25.926 0.00 0.00 0.00 2.69
4811 8758 9.352784 CATGTTTTGTTTACTTCAACTTCTCAA 57.647 29.630 0.00 0.00 0.00 3.02
4812 8759 7.487829 GCATGTTTTGTTTACTTCAACTTCTCA 59.512 33.333 0.00 0.00 0.00 3.27
4813 8760 7.487829 TGCATGTTTTGTTTACTTCAACTTCTC 59.512 33.333 0.00 0.00 0.00 2.87
4814 8761 7.319646 TGCATGTTTTGTTTACTTCAACTTCT 58.680 30.769 0.00 0.00 0.00 2.85
4815 8762 7.518731 TGCATGTTTTGTTTACTTCAACTTC 57.481 32.000 0.00 0.00 0.00 3.01
4816 8763 7.763528 TCATGCATGTTTTGTTTACTTCAACTT 59.236 29.630 25.43 0.00 0.00 2.66
4817 8764 7.264221 TCATGCATGTTTTGTTTACTTCAACT 58.736 30.769 25.43 0.00 0.00 3.16
4818 8765 7.462109 TCATGCATGTTTTGTTTACTTCAAC 57.538 32.000 25.43 0.00 0.00 3.18
4819 8766 8.484641 TTTCATGCATGTTTTGTTTACTTCAA 57.515 26.923 25.43 5.18 0.00 2.69
4820 8767 8.386606 GTTTTCATGCATGTTTTGTTTACTTCA 58.613 29.630 25.43 0.00 0.00 3.02
4821 8768 7.578736 CGTTTTCATGCATGTTTTGTTTACTTC 59.421 33.333 25.43 4.13 0.00 3.01
4822 8769 7.397970 CGTTTTCATGCATGTTTTGTTTACTT 58.602 30.769 25.43 0.00 0.00 2.24
4823 8770 6.509358 GCGTTTTCATGCATGTTTTGTTTACT 60.509 34.615 25.43 0.00 34.70 2.24
4824 8771 5.615181 GCGTTTTCATGCATGTTTTGTTTAC 59.385 36.000 25.43 12.15 34.70 2.01
4825 8772 5.521735 AGCGTTTTCATGCATGTTTTGTTTA 59.478 32.000 25.43 1.24 37.39 2.01
4893 8840 3.575965 AAATGACTTGGAATCGGTTGC 57.424 42.857 0.00 0.00 0.00 4.17
4919 8866 6.448852 CATTTGAATTGATTGCGGATATGGA 58.551 36.000 0.00 0.00 0.00 3.41
4928 8875 6.025280 GCATTGTTCCATTTGAATTGATTGC 58.975 36.000 0.00 0.00 34.90 3.56
4960 8907 3.505680 TGGTTGGGATCATTCGACTTTTG 59.494 43.478 0.00 0.00 0.00 2.44
4962 8909 3.433306 TGGTTGGGATCATTCGACTTT 57.567 42.857 0.00 0.00 0.00 2.66
4980 8927 6.668541 AAGTTGATCTGATTCGTTACATGG 57.331 37.500 0.00 0.00 0.00 3.66
5083 9034 1.680651 TATTGGGGGTGCAAAGGCG 60.681 57.895 0.00 0.00 45.35 5.52
5138 9089 2.050144 GTTCTCTGCATCATAGGGGGA 58.950 52.381 0.00 0.00 0.00 4.81
5155 9106 4.174762 GGTGATACTTCTGGAAGACGTTC 58.825 47.826 16.06 7.96 43.62 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.