Multiple sequence alignment - TraesCS1B01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G317000 chr1B 100.000 4872 0 0 1 4872 541470854 541465983 0.000000e+00 8997.0
1 TraesCS1B01G317000 chr1D 92.488 2689 115 47 62 2731 403239691 403237071 0.000000e+00 3766.0
2 TraesCS1B01G317000 chr1D 92.462 1048 52 13 3561 4606 403236541 403235519 0.000000e+00 1472.0
3 TraesCS1B01G317000 chr1D 96.732 459 14 1 2882 3339 403237046 403236588 0.000000e+00 763.0
4 TraesCS1B01G317000 chr1D 94.382 267 15 0 3320 3586 423924757 423924491 1.260000e-110 411.0
5 TraesCS1B01G317000 chr1D 93.358 271 17 1 3316 3585 158109725 158109995 2.730000e-107 399.0
6 TraesCS1B01G317000 chr1D 82.759 116 20 0 4755 4870 118471213 118471328 2.400000e-18 104.0
7 TraesCS1B01G317000 chr1A 92.375 1718 77 27 77 1783 498455030 498453356 0.000000e+00 2398.0
8 TraesCS1B01G317000 chr1A 89.705 1185 74 17 3582 4747 498451673 498450518 0.000000e+00 1469.0
9 TraesCS1B01G317000 chr1A 86.011 722 43 18 1706 2403 498453471 498452784 0.000000e+00 721.0
10 TraesCS1B01G317000 chr1A 96.418 335 12 0 2401 2735 498452670 498452336 1.980000e-153 553.0
11 TraesCS1B01G317000 chr1A 95.833 288 12 0 2831 3118 498452332 498452045 2.660000e-127 466.0
12 TraesCS1B01G317000 chr1A 88.983 118 12 1 4754 4870 498449250 498449133 1.410000e-30 145.0
13 TraesCS1B01G317000 chr1A 81.452 124 21 2 4748 4870 130126780 130126902 3.100000e-17 100.0
14 TraesCS1B01G317000 chr4A 99.248 266 2 0 3315 3580 237242292 237242557 9.480000e-132 481.0
15 TraesCS1B01G317000 chr3B 99.251 267 1 1 3319 3585 781759687 781759952 9.480000e-132 481.0
16 TraesCS1B01G317000 chr3B 94.578 166 9 0 989 1154 581026436 581026601 1.740000e-64 257.0
17 TraesCS1B01G317000 chr3B 90.551 127 12 0 2481 2607 581029964 581030090 8.390000e-38 169.0
18 TraesCS1B01G317000 chr3B 95.402 87 3 1 2727 2813 755174885 755174800 2.370000e-28 137.0
19 TraesCS1B01G317000 chr3B 95.402 87 3 1 2727 2813 756117487 756117572 2.370000e-28 137.0
20 TraesCS1B01G317000 chr3B 91.000 100 7 2 2731 2830 113917064 113917161 3.060000e-27 134.0
21 TraesCS1B01G317000 chr2D 95.094 265 12 1 3320 3583 638340611 638340875 2.710000e-112 416.0
22 TraesCS1B01G317000 chr2D 94.030 268 15 1 3320 3587 6206075 6206341 5.870000e-109 405.0
23 TraesCS1B01G317000 chr2D 88.957 163 16 2 991 1153 277672710 277672870 2.970000e-47 200.0
24 TraesCS1B01G317000 chr2D 92.784 97 5 2 2725 2819 643235917 643235821 6.580000e-29 139.0
25 TraesCS1B01G317000 chr7A 94.382 267 15 0 3319 3585 558085164 558084898 1.260000e-110 411.0
26 TraesCS1B01G317000 chr6D 94.074 270 14 2 3319 3587 151317474 151317206 4.540000e-110 409.0
27 TraesCS1B01G317000 chr2B 94.074 270 14 2 3319 3587 570832664 570832932 4.540000e-110 409.0
28 TraesCS1B01G317000 chr3D 95.181 166 8 0 989 1154 443258967 443259132 3.740000e-66 263.0
29 TraesCS1B01G317000 chr3D 89.706 136 12 2 2481 2614 443259706 443259841 6.480000e-39 172.0
30 TraesCS1B01G317000 chr3D 95.402 87 4 0 2727 2813 567196558 567196644 6.580000e-29 139.0
31 TraesCS1B01G317000 chr3A 93.976 166 10 0 989 1154 584276532 584276697 8.100000e-63 252.0
32 TraesCS1B01G317000 chr3A 91.339 127 11 0 2481 2607 584277248 584277374 1.800000e-39 174.0
33 TraesCS1B01G317000 chr5A 91.463 164 14 0 991 1154 645261070 645261233 4.910000e-55 226.0
34 TraesCS1B01G317000 chr5D 90.854 164 15 0 991 1154 517840464 517840627 2.280000e-53 220.0
35 TraesCS1B01G317000 chr5D 84.800 125 18 1 4748 4872 542589018 542588895 1.840000e-24 124.0
36 TraesCS1B01G317000 chr5D 80.645 124 24 0 4747 4870 443851702 443851579 4.010000e-16 97.1
37 TraesCS1B01G317000 chr5B 90.854 164 15 0 991 1154 650546192 650546355 2.280000e-53 220.0
38 TraesCS1B01G317000 chr7B 89.744 117 12 0 4752 4868 438981045 438981161 3.040000e-32 150.0
39 TraesCS1B01G317000 chrUn 95.402 87 3 1 2727 2813 320256093 320256178 2.370000e-28 137.0
40 TraesCS1B01G317000 chrUn 95.402 87 3 1 2727 2813 357700743 357700828 2.370000e-28 137.0
41 TraesCS1B01G317000 chr4B 85.714 126 9 7 2726 2848 660877080 660877199 1.840000e-24 124.0
42 TraesCS1B01G317000 chr4B 85.714 126 9 7 2726 2848 660907327 660907446 1.840000e-24 124.0
43 TraesCS1B01G317000 chr4B 82.203 118 21 0 4748 4865 390411876 390411993 8.630000e-18 102.0
44 TraesCS1B01G317000 chr4B 100.000 29 0 0 34 62 601795119 601795091 2.000000e-03 54.7
45 TraesCS1B01G317000 chr2A 81.897 116 20 1 4754 4868 8556071 8556186 4.010000e-16 97.1
46 TraesCS1B01G317000 chr7D 80.000 105 16 3 4748 4852 185724536 185724635 6.760000e-09 73.1
47 TraesCS1B01G317000 chr6B 100.000 29 0 0 34 62 598545085 598545057 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G317000 chr1B 541465983 541470854 4871 True 8997.000000 8997 100.000000 1 4872 1 chr1B.!!$R1 4871
1 TraesCS1B01G317000 chr1D 403235519 403239691 4172 True 2000.333333 3766 93.894000 62 4606 3 chr1D.!!$R2 4544
2 TraesCS1B01G317000 chr1A 498449133 498455030 5897 True 958.666667 2398 91.554167 77 4870 6 chr1A.!!$R1 4793
3 TraesCS1B01G317000 chr3B 581026436 581030090 3654 False 213.000000 257 92.564500 989 2607 2 chr3B.!!$F4 1618
4 TraesCS1B01G317000 chr3D 443258967 443259841 874 False 217.500000 263 92.443500 989 2614 2 chr3D.!!$F2 1625
5 TraesCS1B01G317000 chr3A 584276532 584277374 842 False 213.000000 252 92.657500 989 2607 2 chr3A.!!$F1 1618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 914 0.035439 GGGTGGCTTCGATTCTGGAA 60.035 55.0 0.0 0.0 0.00 3.53 F
1811 4813 0.541392 AAGGTGTGTCAGCACTGTCA 59.459 50.0 0.0 0.0 45.44 3.58 F
2030 5052 0.029834 GCTGTTGCTGTGTGTTCAGG 59.970 55.0 0.0 0.0 36.12 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 5023 0.179009 ACACAGCAACAGCATGAGGT 60.179 50.0 0.00 0.0 39.69 3.85 R
3552 6939 0.179174 CCGTTCCAAAATGTAGCGCC 60.179 55.0 2.29 0.0 0.00 6.53 R
3997 7385 0.179215 CAATCGAGCAAGACGCCAAC 60.179 55.0 0.00 0.0 44.04 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.794335 ATTCTTTGTAAAGATTCCACTAGGAC 57.206 34.615 7.80 0.00 43.92 3.85
36 37 7.554959 TCTTTGTAAAGATTCCACTAGGACT 57.445 36.000 3.05 0.00 40.90 3.85
37 38 7.974504 TCTTTGTAAAGATTCCACTAGGACTT 58.025 34.615 3.05 0.00 40.90 3.01
38 39 9.096823 TCTTTGTAAAGATTCCACTAGGACTTA 57.903 33.333 3.05 0.00 40.90 2.24
39 40 9.152595 CTTTGTAAAGATTCCACTAGGACTTAC 57.847 37.037 0.00 0.00 40.08 2.34
40 41 7.786046 TGTAAAGATTCCACTAGGACTTACA 57.214 36.000 0.00 0.00 45.73 2.41
41 42 8.375493 TGTAAAGATTCCACTAGGACTTACAT 57.625 34.615 0.00 0.00 45.73 2.29
42 43 8.822805 TGTAAAGATTCCACTAGGACTTACATT 58.177 33.333 0.00 0.00 45.73 2.71
43 44 9.668497 GTAAAGATTCCACTAGGACTTACATTT 57.332 33.333 0.00 0.00 45.73 2.32
45 46 9.892130 AAAGATTCCACTAGGACTTACATTTAG 57.108 33.333 0.00 0.00 45.73 1.85
46 47 8.024145 AGATTCCACTAGGACTTACATTTAGG 57.976 38.462 0.00 0.00 45.73 2.69
47 48 7.844779 AGATTCCACTAGGACTTACATTTAGGA 59.155 37.037 0.00 0.00 45.73 2.94
48 49 7.801893 TTCCACTAGGACTTACATTTAGGAA 57.198 36.000 0.00 0.00 45.73 3.36
49 50 7.179076 TCCACTAGGACTTACATTTAGGAAC 57.821 40.000 0.00 0.00 39.61 3.62
50 51 6.040878 CCACTAGGACTTACATTTAGGAACG 58.959 44.000 0.00 0.00 36.89 3.95
51 52 6.040878 CACTAGGACTTACATTTAGGAACGG 58.959 44.000 0.00 0.00 0.00 4.44
52 53 5.954150 ACTAGGACTTACATTTAGGAACGGA 59.046 40.000 0.00 0.00 0.00 4.69
53 54 5.340439 AGGACTTACATTTAGGAACGGAG 57.660 43.478 0.00 0.00 0.00 4.63
54 55 4.161754 AGGACTTACATTTAGGAACGGAGG 59.838 45.833 0.00 0.00 0.00 4.30
55 56 4.081254 GGACTTACATTTAGGAACGGAGGT 60.081 45.833 0.00 0.00 0.00 3.85
56 57 5.127682 GGACTTACATTTAGGAACGGAGGTA 59.872 44.000 0.00 0.00 0.00 3.08
57 58 6.218108 ACTTACATTTAGGAACGGAGGTAG 57.782 41.667 0.00 0.00 0.00 3.18
58 59 5.718607 ACTTACATTTAGGAACGGAGGTAGT 59.281 40.000 0.00 0.00 0.00 2.73
59 60 6.891908 ACTTACATTTAGGAACGGAGGTAGTA 59.108 38.462 0.00 0.00 0.00 1.82
60 61 5.848833 ACATTTAGGAACGGAGGTAGTAG 57.151 43.478 0.00 0.00 0.00 2.57
61 62 5.267587 ACATTTAGGAACGGAGGTAGTAGT 58.732 41.667 0.00 0.00 0.00 2.73
62 63 6.426587 ACATTTAGGAACGGAGGTAGTAGTA 58.573 40.000 0.00 0.00 0.00 1.82
63 64 6.319911 ACATTTAGGAACGGAGGTAGTAGTAC 59.680 42.308 0.00 0.00 0.00 2.73
64 65 5.435686 TTAGGAACGGAGGTAGTAGTACA 57.564 43.478 9.89 0.00 0.00 2.90
65 66 3.883669 AGGAACGGAGGTAGTAGTACAG 58.116 50.000 9.89 1.13 0.00 2.74
66 67 3.265479 AGGAACGGAGGTAGTAGTACAGT 59.735 47.826 9.89 1.69 0.00 3.55
67 68 4.471386 AGGAACGGAGGTAGTAGTACAGTA 59.529 45.833 9.89 0.00 0.00 2.74
68 69 4.572795 GGAACGGAGGTAGTAGTACAGTAC 59.427 50.000 9.89 2.05 32.96 2.73
69 70 4.826274 ACGGAGGTAGTAGTACAGTACA 57.174 45.455 13.37 0.00 35.09 2.90
70 71 5.365021 ACGGAGGTAGTAGTACAGTACAT 57.635 43.478 13.37 1.39 35.09 2.29
125 126 7.624360 ATGTTGAATCACCGCTATTTTCTAA 57.376 32.000 0.00 0.00 0.00 2.10
300 304 3.949113 CCTCCCTATATAGACTTCCTCGC 59.051 52.174 11.53 0.00 0.00 5.03
330 334 2.277072 CGGCCTCCCTCTCTCTCA 59.723 66.667 0.00 0.00 0.00 3.27
341 345 4.078688 TCCCTCTCTCTCATCCATTTCTCT 60.079 45.833 0.00 0.00 0.00 3.10
342 346 4.281688 CCCTCTCTCTCATCCATTTCTCTC 59.718 50.000 0.00 0.00 0.00 3.20
343 347 4.281688 CCTCTCTCTCATCCATTTCTCTCC 59.718 50.000 0.00 0.00 0.00 3.71
476 480 1.548081 TCTCGGTAACCACCATTCGA 58.452 50.000 0.00 0.00 46.14 3.71
487 491 1.678627 CACCATTCGACGGATCTCTCT 59.321 52.381 7.06 0.00 0.00 3.10
576 602 4.260620 CGGCCGATTCGTGATCTTATTTTT 60.261 41.667 24.07 0.00 32.30 1.94
604 630 1.667177 CGTGATCGTGTTCAGTCTGCT 60.667 52.381 0.00 0.00 0.00 4.24
624 650 2.124695 GTTCTGGTGGATCGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
637 663 1.218047 CGGGGCTGTTCGATCTCAA 59.782 57.895 0.00 0.00 0.00 3.02
644 670 3.247173 GGCTGTTCGATCTCAATCATCAC 59.753 47.826 0.00 0.00 31.76 3.06
674 700 2.025727 CGGTAGATGCGGTCGGTC 59.974 66.667 0.00 0.00 0.00 4.79
707 733 0.392998 ATTTGAGGAATCTGCCGCGT 60.393 50.000 4.92 0.00 0.00 6.01
745 771 0.947244 CTCAGCTTTGTTTCCACGCT 59.053 50.000 0.00 0.00 0.00 5.07
836 862 3.200593 CAGTGCAGCGGATCTGGC 61.201 66.667 3.14 2.31 43.06 4.85
888 914 0.035439 GGGTGGCTTCGATTCTGGAA 60.035 55.000 0.00 0.00 0.00 3.53
890 916 1.468914 GGTGGCTTCGATTCTGGAAAC 59.531 52.381 0.00 0.00 0.00 2.78
952 986 2.916269 TGTGTGGATCTATGGGGTTGAA 59.084 45.455 0.00 0.00 0.00 2.69
958 992 3.885901 GGATCTATGGGGTTGAAGCTTTC 59.114 47.826 0.00 0.00 0.00 2.62
1196 3490 7.680442 TTCTGTTAGCAGCATGTTGTTTATA 57.320 32.000 11.44 0.00 42.29 0.98
1214 4209 9.834628 TTGTTTATATTGCTGTTACTTTGTAGC 57.165 29.630 0.00 0.00 36.72 3.58
1296 4293 3.305335 GGTGTTCCATGGTAAGCAAGTTG 60.305 47.826 12.58 0.00 0.00 3.16
1477 4474 5.414454 ACTTCACGTGCCATGTTATTTGTAT 59.586 36.000 11.67 0.00 0.00 2.29
1513 4510 9.546428 AACTTTTATATTTGAAAAGCAGCAAGT 57.454 25.926 8.48 0.00 44.32 3.16
1514 4511 9.546428 ACTTTTATATTTGAAAAGCAGCAAGTT 57.454 25.926 8.48 0.00 44.32 2.66
1555 4555 7.577426 GCCTAATTGAAGACAAACCATTCATGA 60.577 37.037 0.00 0.00 39.54 3.07
1650 4650 3.701542 CAGTCAAGGCAGGATAGACTGTA 59.298 47.826 11.55 0.00 46.72 2.74
1663 4663 7.170489 CAGGATAGACTGTATGCACTGTAATTG 59.830 40.741 0.00 0.00 37.01 2.32
1664 4664 6.986817 GGATAGACTGTATGCACTGTAATTGT 59.013 38.462 0.00 0.00 37.01 2.71
1665 4665 7.042456 GGATAGACTGTATGCACTGTAATTGTG 60.042 40.741 0.00 0.00 37.01 3.33
1666 4666 5.551233 AGACTGTATGCACTGTAATTGTGT 58.449 37.500 0.00 0.00 37.01 3.72
1667 4667 6.697395 AGACTGTATGCACTGTAATTGTGTA 58.303 36.000 0.00 0.00 37.01 2.90
1795 4797 9.823647 ACTGTCATAGTGATTACTGATTTAAGG 57.176 33.333 0.00 0.00 38.49 2.69
1796 4798 9.823647 CTGTCATAGTGATTACTGATTTAAGGT 57.176 33.333 0.00 0.00 37.78 3.50
1797 4799 9.599866 TGTCATAGTGATTACTGATTTAAGGTG 57.400 33.333 0.00 0.00 37.78 4.00
1798 4800 9.601217 GTCATAGTGATTACTGATTTAAGGTGT 57.399 33.333 0.00 0.00 37.78 4.16
1799 4801 9.599866 TCATAGTGATTACTGATTTAAGGTGTG 57.400 33.333 0.00 0.00 37.78 3.82
1800 4802 9.383519 CATAGTGATTACTGATTTAAGGTGTGT 57.616 33.333 0.00 0.00 37.78 3.72
1801 4803 7.907214 AGTGATTACTGATTTAAGGTGTGTC 57.093 36.000 0.00 0.00 35.34 3.67
1802 4804 7.450074 AGTGATTACTGATTTAAGGTGTGTCA 58.550 34.615 0.00 0.00 35.34 3.58
1803 4805 7.604164 AGTGATTACTGATTTAAGGTGTGTCAG 59.396 37.037 0.00 0.00 41.47 3.51
1804 4806 6.371548 TGATTACTGATTTAAGGTGTGTCAGC 59.628 38.462 0.00 0.00 39.83 4.26
1805 4807 4.085357 ACTGATTTAAGGTGTGTCAGCA 57.915 40.909 0.00 0.00 39.83 4.41
1806 4808 3.815401 ACTGATTTAAGGTGTGTCAGCAC 59.185 43.478 0.00 0.00 45.44 4.40
1807 4809 4.067896 CTGATTTAAGGTGTGTCAGCACT 58.932 43.478 2.00 0.00 45.44 4.40
1808 4810 3.814842 TGATTTAAGGTGTGTCAGCACTG 59.185 43.478 2.00 0.00 45.44 3.66
1809 4811 3.275617 TTTAAGGTGTGTCAGCACTGT 57.724 42.857 0.00 0.00 45.44 3.55
1810 4812 2.526304 TAAGGTGTGTCAGCACTGTC 57.474 50.000 0.00 0.00 45.44 3.51
1811 4813 0.541392 AAGGTGTGTCAGCACTGTCA 59.459 50.000 0.00 0.00 45.44 3.58
1812 4814 0.761187 AGGTGTGTCAGCACTGTCAT 59.239 50.000 1.08 0.00 45.44 3.06
1813 4815 1.970640 AGGTGTGTCAGCACTGTCATA 59.029 47.619 1.08 0.00 45.44 2.15
1814 4816 2.028658 AGGTGTGTCAGCACTGTCATAG 60.029 50.000 1.08 0.00 45.44 2.23
1815 4817 2.289072 GGTGTGTCAGCACTGTCATAGT 60.289 50.000 1.08 0.00 45.44 2.12
1852 4854 8.991243 ACACTCATTAATGTCATTTTGATTGG 57.009 30.769 14.97 12.58 0.00 3.16
1865 4871 9.965824 GTCATTTTGATTGGTACTTATATTGGG 57.034 33.333 0.00 0.00 0.00 4.12
1905 4911 8.617809 GTTTAATAACCATGAATCCTAGCGAAA 58.382 33.333 0.00 0.00 0.00 3.46
1951 4961 1.141657 TCATGAGCAGCATAACCTCCC 59.858 52.381 0.00 0.00 34.82 4.30
1952 4962 1.142465 CATGAGCAGCATAACCTCCCT 59.858 52.381 0.00 0.00 34.82 4.20
2030 5052 0.029834 GCTGTTGCTGTGTGTTCAGG 59.970 55.000 0.00 0.00 36.12 3.86
2235 5261 3.421844 GGTCAGGACAAGGTAAGCAAAT 58.578 45.455 1.41 0.00 0.00 2.32
2255 5281 7.047271 GCAAATTTCCTGAAGGCCAATAATTA 58.953 34.615 5.01 0.00 34.44 1.40
2335 5425 1.567357 TACACTGAGGTGCATGCCTA 58.433 50.000 16.68 0.00 46.57 3.93
2337 5427 1.306148 CACTGAGGTGCATGCCTATG 58.694 55.000 16.68 4.88 39.34 2.23
2392 5482 7.678837 TCTAATTGGAATTTTGAAACATGCCT 58.321 30.769 0.00 0.00 0.00 4.75
2614 5822 2.205074 GCTGAATGAGGTATCACCACG 58.795 52.381 0.00 0.00 41.95 4.94
2706 5914 4.978083 TCACTAGGTTGTCGGATACTTC 57.022 45.455 0.00 0.00 0.00 3.01
2743 5951 9.967451 TCTCTTGTCTATTATACTCCCTCTATG 57.033 37.037 0.00 0.00 0.00 2.23
2744 5952 9.967451 CTCTTGTCTATTATACTCCCTCTATGA 57.033 37.037 0.00 0.00 0.00 2.15
2759 5967 9.632807 CTCCCTCTATGAAGAAATATAAGAACG 57.367 37.037 0.00 0.00 0.00 3.95
2760 5968 9.144298 TCCCTCTATGAAGAAATATAAGAACGT 57.856 33.333 0.00 0.00 0.00 3.99
2761 5969 9.765795 CCCTCTATGAAGAAATATAAGAACGTT 57.234 33.333 0.00 0.00 0.00 3.99
2811 6019 9.525826 AATGCTCTTATATTTCTTTATGGAGGG 57.474 33.333 0.00 0.00 0.00 4.30
2812 6020 8.275187 TGCTCTTATATTTCTTTATGGAGGGA 57.725 34.615 0.00 0.00 0.00 4.20
2813 6021 8.723365 TGCTCTTATATTTCTTTATGGAGGGAA 58.277 33.333 0.00 0.00 0.00 3.97
2814 6022 9.746457 GCTCTTATATTTCTTTATGGAGGGAAT 57.254 33.333 0.00 0.00 0.00 3.01
2872 6080 6.201591 AGTCTCTCTCTGACAAGGGAATATT 58.798 40.000 0.00 0.00 36.94 1.28
3002 6210 2.028043 GTGCTGCTGGTGTTTGCC 59.972 61.111 0.00 0.00 0.00 4.52
3097 6305 1.732259 GCGACACTGGTATGGTTTCTG 59.268 52.381 0.00 0.00 0.00 3.02
3145 6353 4.856487 CACTGTTGCACCATATTTTTACGG 59.144 41.667 0.00 0.00 0.00 4.02
3182 6390 7.015226 TCTTCAATAACATGCCTATTTCGTG 57.985 36.000 0.00 0.00 0.00 4.35
3225 6595 5.046304 TGGGAAGGAACAAAAACATGAAACA 60.046 36.000 0.00 0.00 0.00 2.83
3229 6599 7.201522 GGAAGGAACAAAAACATGAAACACTTC 60.202 37.037 0.00 0.00 0.00 3.01
3329 6716 1.490490 GCATCCAACATACTCCCTCCA 59.510 52.381 0.00 0.00 0.00 3.86
3335 6722 3.545703 CAACATACTCCCTCCATTCCAC 58.454 50.000 0.00 0.00 0.00 4.02
3339 6726 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
3340 6727 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
3342 6729 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
3343 6730 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
3344 6731 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
3346 6733 3.346315 CTCCATTCCACAATGTAGTGCA 58.654 45.455 0.00 0.00 38.22 4.57
3347 6734 3.949754 CTCCATTCCACAATGTAGTGCAT 59.050 43.478 0.00 0.00 38.22 3.96
3349 6736 5.693961 TCCATTCCACAATGTAGTGCATAT 58.306 37.500 0.00 0.00 38.22 1.78
3350 6737 6.836242 TCCATTCCACAATGTAGTGCATATA 58.164 36.000 0.00 0.00 38.22 0.86
3351 6738 6.936335 TCCATTCCACAATGTAGTGCATATAG 59.064 38.462 0.00 0.00 38.22 1.31
3352 6739 6.936335 CCATTCCACAATGTAGTGCATATAGA 59.064 38.462 0.00 0.00 38.22 1.98
3354 6741 9.006839 CATTCCACAATGTAGTGCATATAGATT 57.993 33.333 0.00 0.00 36.67 2.40
3356 6743 8.978874 TCCACAATGTAGTGCATATAGATTTT 57.021 30.769 0.00 0.00 36.67 1.82
3357 6744 9.407380 TCCACAATGTAGTGCATATAGATTTTT 57.593 29.630 0.00 0.00 36.67 1.94
3358 6745 9.454585 CCACAATGTAGTGCATATAGATTTTTG 57.545 33.333 0.00 0.00 36.67 2.44
3367 6754 9.890629 AGTGCATATAGATTTTTGTAGAAGTCA 57.109 29.630 0.00 0.00 0.00 3.41
3375 6762 8.634475 AGATTTTTGTAGAAGTCAAACTTTGC 57.366 30.769 0.00 0.00 38.80 3.68
3376 6763 7.706607 AGATTTTTGTAGAAGTCAAACTTTGCC 59.293 33.333 0.00 0.00 38.80 4.52
3377 6764 5.906113 TTTGTAGAAGTCAAACTTTGCCA 57.094 34.783 0.00 0.00 38.80 4.92
3378 6765 5.906113 TTGTAGAAGTCAAACTTTGCCAA 57.094 34.783 0.00 0.00 38.80 4.52
3379 6766 5.243426 TGTAGAAGTCAAACTTTGCCAAC 57.757 39.130 0.00 0.00 38.80 3.77
3380 6767 4.947388 TGTAGAAGTCAAACTTTGCCAACT 59.053 37.500 0.00 0.00 38.80 3.16
3381 6768 5.417580 TGTAGAAGTCAAACTTTGCCAACTT 59.582 36.000 6.74 6.74 38.80 2.66
3383 6770 5.170748 AGAAGTCAAACTTTGCCAACTTTG 58.829 37.500 7.95 1.84 38.80 2.77
3384 6771 4.799564 AGTCAAACTTTGCCAACTTTGA 57.200 36.364 5.68 5.68 31.68 2.69
3385 6772 4.494484 AGTCAAACTTTGCCAACTTTGAC 58.506 39.130 21.64 21.64 46.84 3.18
3386 6773 3.616821 GTCAAACTTTGCCAACTTTGACC 59.383 43.478 19.93 9.30 43.35 4.02
3387 6774 3.259374 TCAAACTTTGCCAACTTTGACCA 59.741 39.130 5.68 0.00 29.66 4.02
3388 6775 3.971245 AACTTTGCCAACTTTGACCAA 57.029 38.095 0.00 0.00 0.00 3.67
3389 6776 3.525268 ACTTTGCCAACTTTGACCAAG 57.475 42.857 0.00 0.00 38.64 3.61
3391 6778 2.957491 TTGCCAACTTTGACCAAGTG 57.043 45.000 0.00 0.00 45.77 3.16
3392 6779 1.846007 TGCCAACTTTGACCAAGTGT 58.154 45.000 0.00 0.00 45.77 3.55
3393 6780 3.006112 TGCCAACTTTGACCAAGTGTA 57.994 42.857 0.00 0.00 45.77 2.90
3394 6781 3.561143 TGCCAACTTTGACCAAGTGTAT 58.439 40.909 0.00 0.00 45.77 2.29
3395 6782 4.720046 TGCCAACTTTGACCAAGTGTATA 58.280 39.130 0.00 0.00 45.77 1.47
3396 6783 4.517453 TGCCAACTTTGACCAAGTGTATAC 59.483 41.667 0.00 0.00 45.77 1.47
3397 6784 4.517453 GCCAACTTTGACCAAGTGTATACA 59.483 41.667 0.08 0.08 45.77 2.29
3398 6785 5.334879 GCCAACTTTGACCAAGTGTATACAG 60.335 44.000 5.62 0.00 45.77 2.74
3399 6786 5.995282 CCAACTTTGACCAAGTGTATACAGA 59.005 40.000 5.62 0.00 45.77 3.41
3400 6787 6.485313 CCAACTTTGACCAAGTGTATACAGAA 59.515 38.462 5.62 0.00 45.77 3.02
3401 6788 7.012894 CCAACTTTGACCAAGTGTATACAGAAA 59.987 37.037 5.62 0.00 45.77 2.52
3402 6789 8.402472 CAACTTTGACCAAGTGTATACAGAAAA 58.598 33.333 5.62 1.70 45.77 2.29
3403 6790 7.927048 ACTTTGACCAAGTGTATACAGAAAAC 58.073 34.615 5.62 0.00 44.70 2.43
3404 6791 7.554835 ACTTTGACCAAGTGTATACAGAAAACA 59.445 33.333 5.62 0.60 44.70 2.83
3405 6792 7.490962 TTGACCAAGTGTATACAGAAAACAG 57.509 36.000 5.62 0.00 0.00 3.16
3406 6793 6.588204 TGACCAAGTGTATACAGAAAACAGT 58.412 36.000 5.62 0.00 0.00 3.55
3407 6794 6.704493 TGACCAAGTGTATACAGAAAACAGTC 59.296 38.462 5.62 7.83 0.00 3.51
3408 6795 6.827727 ACCAAGTGTATACAGAAAACAGTCT 58.172 36.000 5.62 0.00 0.00 3.24
3409 6796 7.959175 ACCAAGTGTATACAGAAAACAGTCTA 58.041 34.615 5.62 0.00 0.00 2.59
3410 6797 7.871463 ACCAAGTGTATACAGAAAACAGTCTAC 59.129 37.037 5.62 0.00 0.00 2.59
3411 6798 7.870954 CCAAGTGTATACAGAAAACAGTCTACA 59.129 37.037 5.62 0.00 0.00 2.74
3412 6799 9.424319 CAAGTGTATACAGAAAACAGTCTACAT 57.576 33.333 5.62 0.00 32.41 2.29
3413 6800 9.640963 AAGTGTATACAGAAAACAGTCTACATC 57.359 33.333 5.62 0.00 32.41 3.06
3414 6801 9.026121 AGTGTATACAGAAAACAGTCTACATCT 57.974 33.333 5.62 0.00 32.41 2.90
3421 6808 9.640963 ACAGAAAACAGTCTACATCTACAATAC 57.359 33.333 0.00 0.00 0.00 1.89
3422 6809 9.862371 CAGAAAACAGTCTACATCTACAATACT 57.138 33.333 0.00 0.00 0.00 2.12
3451 6838 9.725019 ACATGTACATTCTGAAAATAGAACTCA 57.275 29.630 5.37 0.00 39.33 3.41
3454 6841 9.942850 TGTACATTCTGAAAATAGAACTCATGA 57.057 29.630 0.00 0.00 39.33 3.07
3457 6844 9.458727 ACATTCTGAAAATAGAACTCATGATGT 57.541 29.630 0.00 0.00 39.33 3.06
3461 6848 9.770097 TCTGAAAATAGAACTCATGATGTATCC 57.230 33.333 0.00 0.00 0.00 2.59
3462 6849 9.551734 CTGAAAATAGAACTCATGATGTATCCA 57.448 33.333 0.00 0.00 0.00 3.41
3463 6850 9.904198 TGAAAATAGAACTCATGATGTATCCAA 57.096 29.630 0.00 0.00 0.00 3.53
3468 6855 7.981102 AGAACTCATGATGTATCCAATGATG 57.019 36.000 0.00 0.00 32.18 3.07
3469 6856 7.515586 AGAACTCATGATGTATCCAATGATGT 58.484 34.615 0.00 0.00 32.18 3.06
3470 6857 7.444487 AGAACTCATGATGTATCCAATGATGTG 59.556 37.037 0.00 0.00 32.18 3.21
3471 6858 5.472478 ACTCATGATGTATCCAATGATGTGC 59.528 40.000 0.00 0.00 32.18 4.57
3472 6859 5.378332 TCATGATGTATCCAATGATGTGCA 58.622 37.500 0.00 0.00 32.18 4.57
3473 6860 6.007703 TCATGATGTATCCAATGATGTGCAT 58.992 36.000 0.00 0.00 39.43 3.96
3475 6862 6.718522 TGATGTATCCAATGATGTGCATTT 57.281 33.333 0.00 0.00 44.68 2.32
3476 6863 6.508777 TGATGTATCCAATGATGTGCATTTG 58.491 36.000 0.00 0.00 44.68 2.32
3477 6864 5.265350 TGTATCCAATGATGTGCATTTGG 57.735 39.130 8.57 8.57 44.68 3.28
3478 6865 4.710865 TGTATCCAATGATGTGCATTTGGT 59.289 37.500 12.63 6.06 44.68 3.67
3479 6866 5.890419 TGTATCCAATGATGTGCATTTGGTA 59.110 36.000 12.63 5.40 44.68 3.25
3480 6867 6.550481 TGTATCCAATGATGTGCATTTGGTAT 59.450 34.615 12.63 9.03 44.68 2.73
3481 6868 5.936187 TCCAATGATGTGCATTTGGTATT 57.064 34.783 12.63 0.00 44.68 1.89
3482 6869 5.904941 TCCAATGATGTGCATTTGGTATTC 58.095 37.500 12.63 0.00 44.68 1.75
3483 6870 5.657745 TCCAATGATGTGCATTTGGTATTCT 59.342 36.000 12.63 0.00 44.68 2.40
3484 6871 6.832900 TCCAATGATGTGCATTTGGTATTCTA 59.167 34.615 12.63 0.00 44.68 2.10
3485 6872 7.013559 TCCAATGATGTGCATTTGGTATTCTAG 59.986 37.037 12.63 0.00 44.68 2.43
3486 6873 7.013559 CCAATGATGTGCATTTGGTATTCTAGA 59.986 37.037 0.00 0.00 44.68 2.43
3487 6874 8.573885 CAATGATGTGCATTTGGTATTCTAGAT 58.426 33.333 0.00 0.00 44.68 1.98
3488 6875 7.500720 TGATGTGCATTTGGTATTCTAGATG 57.499 36.000 0.00 0.00 0.00 2.90
3489 6876 7.056006 TGATGTGCATTTGGTATTCTAGATGT 58.944 34.615 0.00 0.00 0.00 3.06
3490 6877 8.210265 TGATGTGCATTTGGTATTCTAGATGTA 58.790 33.333 0.00 0.00 0.00 2.29
3491 6878 7.786178 TGTGCATTTGGTATTCTAGATGTAC 57.214 36.000 0.00 0.27 32.91 2.90
3492 6879 6.765989 TGTGCATTTGGTATTCTAGATGTACC 59.234 38.462 20.29 20.29 38.65 3.34
3493 6880 6.992715 GTGCATTTGGTATTCTAGATGTACCT 59.007 38.462 24.31 10.63 38.89 3.08
3494 6881 8.148351 GTGCATTTGGTATTCTAGATGTACCTA 58.852 37.037 24.31 18.45 38.89 3.08
3495 6882 8.880244 TGCATTTGGTATTCTAGATGTACCTAT 58.120 33.333 24.31 17.95 38.89 2.57
3496 6883 9.726438 GCATTTGGTATTCTAGATGTACCTATT 57.274 33.333 24.31 15.73 38.89 1.73
3540 6927 9.243637 TCAAAGTTTGTAATGTTTGACTATTGC 57.756 29.630 15.08 0.00 34.72 3.56
3541 6928 9.029243 CAAAGTTTGTAATGTTTGACTATTGCA 57.971 29.630 7.48 0.00 32.65 4.08
3542 6929 9.593134 AAAGTTTGTAATGTTTGACTATTGCAA 57.407 25.926 0.00 0.00 37.19 4.08
3543 6930 9.593134 AAGTTTGTAATGTTTGACTATTGCAAA 57.407 25.926 1.71 8.44 42.45 3.68
3544 6931 9.593134 AGTTTGTAATGTTTGACTATTGCAAAA 57.407 25.926 1.71 0.00 44.46 2.44
3548 6935 9.979578 TGTAATGTTTGACTATTGCAAAAATCT 57.020 25.926 1.71 0.00 37.03 2.40
3554 6941 9.237846 GTTTGACTATTGCAAAAATCTATAGGC 57.762 33.333 1.71 1.09 37.03 3.93
3555 6942 7.189693 TGACTATTGCAAAAATCTATAGGCG 57.810 36.000 1.71 0.00 32.39 5.52
3556 6943 6.002062 ACTATTGCAAAAATCTATAGGCGC 57.998 37.500 1.71 0.00 0.00 6.53
3557 6944 5.765182 ACTATTGCAAAAATCTATAGGCGCT 59.235 36.000 7.64 0.00 0.00 5.92
3558 6945 6.934645 ACTATTGCAAAAATCTATAGGCGCTA 59.065 34.615 7.64 0.00 0.00 4.26
3559 6946 5.418310 TTGCAAAAATCTATAGGCGCTAC 57.582 39.130 7.64 0.00 0.00 3.58
3580 6967 3.270877 CATTTTGGAACGGAGGGAGTAG 58.729 50.000 0.00 0.00 0.00 2.57
3584 6971 4.524802 TTGGAACGGAGGGAGTAGTATA 57.475 45.455 0.00 0.00 0.00 1.47
3591 6978 9.247861 GGAACGGAGGGAGTAGTATATTTTATA 57.752 37.037 0.00 0.00 0.00 0.98
3646 7034 8.697846 ATGTGCTTTGATCTTATGTTTTGATG 57.302 30.769 0.00 0.00 0.00 3.07
3756 7144 2.980233 GTGCGTCAGCTGGCCTTT 60.980 61.111 13.81 0.00 45.42 3.11
3758 7146 1.827789 TGCGTCAGCTGGCCTTTTT 60.828 52.632 13.81 0.00 45.42 1.94
3832 7220 8.817876 GGAAGCTAGGTCCATTCTATACTTTAT 58.182 37.037 0.00 0.00 35.05 1.40
3892 7280 4.290622 CCCAAGCTGCCACCTGGT 62.291 66.667 0.00 0.00 37.57 4.00
3893 7281 2.674380 CCAAGCTGCCACCTGGTC 60.674 66.667 0.00 0.00 37.57 4.02
3908 7296 5.505780 CACCTGGTCCATGGAAATAAACTA 58.494 41.667 18.20 0.00 0.00 2.24
3940 7328 7.040823 GGCAGCTTTAGTATATGAAAATGCTCT 60.041 37.037 0.00 0.00 32.20 4.09
3972 7360 7.466590 GCATCTTTCTCTTCTATTGTTGCTACC 60.467 40.741 0.00 0.00 0.00 3.18
3997 7385 6.846325 AGTTTTACTCTGTTTTTCCTCTCG 57.154 37.500 0.00 0.00 0.00 4.04
4002 7390 2.218603 TCTGTTTTTCCTCTCGTTGGC 58.781 47.619 0.00 0.00 0.00 4.52
4049 7437 5.235516 ACTAACCACCTGTCTGTAATTTCG 58.764 41.667 0.00 0.00 0.00 3.46
4282 7670 4.839121 TCATGGTTTTACTATGTCCGCTT 58.161 39.130 0.00 0.00 38.13 4.68
4402 7790 5.417811 TGTGTTGATTTCATGTGCAAAGTT 58.582 33.333 0.00 0.00 0.00 2.66
4446 7834 2.821378 TGATCAACTGGAAATGCTGTGG 59.179 45.455 0.00 0.00 0.00 4.17
4530 7918 8.446599 AAATGGTTTAGACAGTAATATTCCCG 57.553 34.615 0.00 0.00 0.00 5.14
4533 7921 8.076910 TGGTTTAGACAGTAATATTCCCGTTA 57.923 34.615 0.00 0.00 0.00 3.18
4539 7927 6.064735 ACAGTAATATTCCCGTTACCCAAA 57.935 37.500 0.00 0.00 32.54 3.28
4554 7942 2.815503 ACCCAAATTACCAACACGCTAC 59.184 45.455 0.00 0.00 0.00 3.58
4570 7958 2.284417 CGCTACTGGAAATAGGAAACGC 59.716 50.000 0.00 0.00 0.00 4.84
4572 7960 3.309954 GCTACTGGAAATAGGAAACGCTG 59.690 47.826 0.00 0.00 0.00 5.18
4573 7961 3.418684 ACTGGAAATAGGAAACGCTGT 57.581 42.857 0.00 0.00 0.00 4.40
4597 7985 1.795768 TTCAACACTCGCATCAGGTC 58.204 50.000 0.00 0.00 0.00 3.85
4602 7990 0.171231 CACTCGCATCAGGTCGAAGA 59.829 55.000 0.00 0.00 34.07 2.87
4618 8006 3.490759 GACGTGGCTGCGGACATG 61.491 66.667 19.55 19.55 42.90 3.21
4647 8035 2.330041 CGTTTCCACGGTTGCACC 59.670 61.111 0.00 0.00 43.16 5.01
4648 8036 2.184167 CGTTTCCACGGTTGCACCT 61.184 57.895 0.00 0.00 43.16 4.00
4650 8038 1.826054 TTTCCACGGTTGCACCTGG 60.826 57.895 0.00 6.32 37.68 4.45
4651 8039 2.559922 TTTCCACGGTTGCACCTGGT 62.560 55.000 15.96 0.00 37.62 4.00
4652 8040 2.518349 CCACGGTTGCACCTGGTT 60.518 61.111 0.00 0.00 35.66 3.67
4654 8042 1.821759 CACGGTTGCACCTGGTTGA 60.822 57.895 0.00 0.00 35.66 3.18
4655 8043 1.077357 ACGGTTGCACCTGGTTGAA 60.077 52.632 0.00 0.00 35.66 2.69
4663 8069 0.954452 CACCTGGTTGAAAGAGCCAC 59.046 55.000 0.00 0.00 0.00 5.01
4699 8105 7.546667 AGTTGCAATTTATGTCATTTTAGGCTG 59.453 33.333 0.59 0.00 0.00 4.85
4704 8110 7.716799 ATTTATGTCATTTTAGGCTGGACAA 57.283 32.000 0.00 0.00 41.30 3.18
4709 8115 3.831333 TCATTTTAGGCTGGACAATGCAA 59.169 39.130 0.00 0.00 0.00 4.08
4717 8123 2.738314 GCTGGACAATGCAAAATTCACC 59.262 45.455 0.00 0.00 0.00 4.02
4718 8124 3.328505 CTGGACAATGCAAAATTCACCC 58.671 45.455 0.00 0.00 0.00 4.61
4722 8128 2.224499 ACAATGCAAAATTCACCCCCAC 60.224 45.455 0.00 0.00 0.00 4.61
4747 8153 3.064931 GCACCACTTAGCTCGTTAAAGT 58.935 45.455 0.00 0.00 33.82 2.66
4748 8154 3.123116 GCACCACTTAGCTCGTTAAAGTC 59.877 47.826 0.00 0.00 31.21 3.01
4749 8155 3.364023 CACCACTTAGCTCGTTAAAGTCG 59.636 47.826 0.00 0.00 31.21 4.18
4750 8156 3.005155 ACCACTTAGCTCGTTAAAGTCGT 59.995 43.478 0.00 0.00 31.21 4.34
4751 8157 3.364023 CCACTTAGCTCGTTAAAGTCGTG 59.636 47.826 0.00 0.00 31.21 4.35
4786 9453 0.623723 TTCCAATCTCCCTTTCCCCG 59.376 55.000 0.00 0.00 0.00 5.73
4791 9458 0.252742 ATCTCCCTTTCCCCGTCACT 60.253 55.000 0.00 0.00 0.00 3.41
4796 9463 1.374252 CTTTCCCCGTCACTGGTCG 60.374 63.158 0.00 0.00 0.00 4.79
4806 9473 2.043248 ACTGGTCGGCCGGAGTAT 60.043 61.111 27.83 5.73 43.97 2.12
4822 9489 1.457643 TATGAGTGCTAGCGGGGCT 60.458 57.895 10.77 5.45 43.41 5.19
4829 9496 3.706373 CTAGCGGGGCTGGTGTGT 61.706 66.667 0.00 0.00 40.10 3.72
4830 9497 2.284039 TAGCGGGGCTGGTGTGTA 60.284 61.111 0.00 0.00 40.10 2.90
4831 9498 1.686325 CTAGCGGGGCTGGTGTGTAT 61.686 60.000 0.00 0.00 40.10 2.29
4854 9522 1.407437 CGTGGGAAGGAAAGGATGAGG 60.407 57.143 0.00 0.00 0.00 3.86
4856 9524 0.106469 GGGAAGGAAAGGATGAGGGC 60.106 60.000 0.00 0.00 0.00 5.19
4859 9527 0.914417 AAGGAAAGGATGAGGGCGGA 60.914 55.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.232473 GTCCTAGTGGAATCTTTACAAAGAATT 57.768 33.333 8.39 4.39 45.18 2.17
11 12 7.974504 AGTCCTAGTGGAATCTTTACAAAGAA 58.025 34.615 8.39 0.00 45.18 2.52
12 13 7.554959 AGTCCTAGTGGAATCTTTACAAAGA 57.445 36.000 6.85 6.85 45.18 2.52
13 14 9.152595 GTAAGTCCTAGTGGAATCTTTACAAAG 57.847 37.037 0.00 0.00 45.18 2.77
14 15 8.653191 TGTAAGTCCTAGTGGAATCTTTACAAA 58.347 33.333 0.00 0.00 45.18 2.83
15 16 8.197592 TGTAAGTCCTAGTGGAATCTTTACAA 57.802 34.615 0.00 0.00 45.18 2.41
16 17 7.786046 TGTAAGTCCTAGTGGAATCTTTACA 57.214 36.000 0.00 0.00 45.18 2.41
17 18 9.668497 AAATGTAAGTCCTAGTGGAATCTTTAC 57.332 33.333 0.00 0.00 45.18 2.01
19 20 9.892130 CTAAATGTAAGTCCTAGTGGAATCTTT 57.108 33.333 0.00 0.00 45.18 2.52
20 21 8.487028 CCTAAATGTAAGTCCTAGTGGAATCTT 58.513 37.037 0.00 0.00 45.18 2.40
21 22 7.844779 TCCTAAATGTAAGTCCTAGTGGAATCT 59.155 37.037 0.00 0.00 45.18 2.40
22 23 8.019656 TCCTAAATGTAAGTCCTAGTGGAATC 57.980 38.462 0.00 0.00 45.18 2.52
23 24 7.989947 TCCTAAATGTAAGTCCTAGTGGAAT 57.010 36.000 0.00 0.00 45.18 3.01
24 25 7.578189 CGTTCCTAAATGTAAGTCCTAGTGGAA 60.578 40.741 0.00 0.00 45.18 3.53
25 26 6.127535 CGTTCCTAAATGTAAGTCCTAGTGGA 60.128 42.308 0.00 0.00 40.69 4.02
26 27 6.040878 CGTTCCTAAATGTAAGTCCTAGTGG 58.959 44.000 0.00 0.00 0.00 4.00
27 28 6.040878 CCGTTCCTAAATGTAAGTCCTAGTG 58.959 44.000 0.00 0.00 0.00 2.74
28 29 5.954150 TCCGTTCCTAAATGTAAGTCCTAGT 59.046 40.000 0.00 0.00 0.00 2.57
29 30 6.461110 TCCGTTCCTAAATGTAAGTCCTAG 57.539 41.667 0.00 0.00 0.00 3.02
30 31 5.361857 CCTCCGTTCCTAAATGTAAGTCCTA 59.638 44.000 0.00 0.00 0.00 2.94
31 32 4.161754 CCTCCGTTCCTAAATGTAAGTCCT 59.838 45.833 0.00 0.00 0.00 3.85
32 33 4.081254 ACCTCCGTTCCTAAATGTAAGTCC 60.081 45.833 0.00 0.00 0.00 3.85
33 34 5.082251 ACCTCCGTTCCTAAATGTAAGTC 57.918 43.478 0.00 0.00 0.00 3.01
34 35 5.718607 ACTACCTCCGTTCCTAAATGTAAGT 59.281 40.000 0.00 0.00 0.00 2.24
35 36 6.218108 ACTACCTCCGTTCCTAAATGTAAG 57.782 41.667 0.00 0.00 0.00 2.34
36 37 6.891908 ACTACTACCTCCGTTCCTAAATGTAA 59.108 38.462 0.00 0.00 0.00 2.41
37 38 6.426587 ACTACTACCTCCGTTCCTAAATGTA 58.573 40.000 0.00 0.00 0.00 2.29
38 39 5.267587 ACTACTACCTCCGTTCCTAAATGT 58.732 41.667 0.00 0.00 0.00 2.71
39 40 5.848833 ACTACTACCTCCGTTCCTAAATG 57.151 43.478 0.00 0.00 0.00 2.32
40 41 6.426587 TGTACTACTACCTCCGTTCCTAAAT 58.573 40.000 0.00 0.00 0.00 1.40
41 42 5.815581 TGTACTACTACCTCCGTTCCTAAA 58.184 41.667 0.00 0.00 0.00 1.85
42 43 5.045578 ACTGTACTACTACCTCCGTTCCTAA 60.046 44.000 0.00 0.00 0.00 2.69
43 44 4.471386 ACTGTACTACTACCTCCGTTCCTA 59.529 45.833 0.00 0.00 0.00 2.94
44 45 3.265479 ACTGTACTACTACCTCCGTTCCT 59.735 47.826 0.00 0.00 0.00 3.36
45 46 3.615155 ACTGTACTACTACCTCCGTTCC 58.385 50.000 0.00 0.00 0.00 3.62
46 47 5.178797 TGTACTGTACTACTACCTCCGTTC 58.821 45.833 17.98 0.00 0.00 3.95
47 48 5.165961 TGTACTGTACTACTACCTCCGTT 57.834 43.478 17.98 0.00 0.00 4.44
48 49 4.826274 TGTACTGTACTACTACCTCCGT 57.174 45.455 17.98 0.00 0.00 4.69
49 50 5.363101 TCATGTACTGTACTACTACCTCCG 58.637 45.833 17.98 0.00 0.00 4.63
50 51 7.636150 TTTCATGTACTGTACTACTACCTCC 57.364 40.000 17.98 0.00 0.00 4.30
62 63 9.283768 TGACATTACAGATTTTTCATGTACTGT 57.716 29.630 7.12 7.12 42.46 3.55
103 104 6.745907 GGTTTAGAAAATAGCGGTGATTCAAC 59.254 38.462 0.00 0.00 0.00 3.18
125 126 2.417379 CGTGTCCATCGAGAATCAGGTT 60.417 50.000 0.00 0.00 33.17 3.50
225 229 1.019278 TTCTTCGTGGAAGGCGCATC 61.019 55.000 10.83 6.84 39.82 3.91
330 334 3.586429 GAGGAGGAGGAGAGAAATGGAT 58.414 50.000 0.00 0.00 0.00 3.41
341 345 2.039624 GTGGCAGGAGGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
342 346 3.086600 GGTGGCAGGAGGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
343 347 3.465403 CGGTGGCAGGAGGAGGAG 61.465 72.222 0.00 0.00 0.00 3.69
476 480 1.539665 GGGGAGGAGAGAGATCCGT 59.460 63.158 0.00 0.00 44.65 4.69
513 517 3.781770 GAGGAGGTGCCGCATCGAG 62.782 68.421 0.00 0.00 43.43 4.04
514 518 3.838271 GAGGAGGTGCCGCATCGA 61.838 66.667 0.00 0.00 43.43 3.59
515 519 3.842923 AGAGGAGGTGCCGCATCG 61.843 66.667 0.00 0.00 43.43 3.84
516 520 2.037620 ATCAGAGGAGGTGCCGCATC 62.038 60.000 0.00 0.00 43.43 3.91
517 521 2.037620 GATCAGAGGAGGTGCCGCAT 62.038 60.000 0.00 0.00 43.43 4.73
518 522 2.685017 ATCAGAGGAGGTGCCGCA 60.685 61.111 0.00 0.00 43.43 5.69
519 523 2.107953 GATCAGAGGAGGTGCCGC 59.892 66.667 0.00 0.00 43.43 6.53
520 524 2.818132 GGATCAGAGGAGGTGCCG 59.182 66.667 0.00 0.00 43.43 5.69
521 525 1.118356 ATCGGATCAGAGGAGGTGCC 61.118 60.000 1.20 0.00 0.00 5.01
522 526 0.316841 GATCGGATCAGAGGAGGTGC 59.683 60.000 13.02 0.00 0.00 5.01
523 527 0.595588 CGATCGGATCAGAGGAGGTG 59.404 60.000 17.53 0.00 0.00 4.00
524 528 0.538516 CCGATCGGATCAGAGGAGGT 60.539 60.000 30.62 0.00 37.50 3.85
525 529 1.872197 GCCGATCGGATCAGAGGAGG 61.872 65.000 37.64 6.78 37.50 4.30
549 575 2.351336 GATCACGAATCGGCCGACCT 62.351 60.000 33.75 21.60 0.00 3.85
576 602 0.249699 AACACGATCACGGCAACAGA 60.250 50.000 0.00 0.00 44.46 3.41
604 630 1.682849 CCCGATCCACCAGAACCAA 59.317 57.895 0.00 0.00 0.00 3.67
624 650 3.806521 GGGTGATGATTGAGATCGAACAG 59.193 47.826 0.00 0.00 34.91 3.16
674 700 3.563808 TCCTCAAATCACACCGTCAAAAG 59.436 43.478 0.00 0.00 0.00 2.27
904 938 7.272978 ACACAGGCTCGTTGTATAAGAATTAT 58.727 34.615 0.00 0.00 44.82 1.28
915 949 0.530650 CACAGACACAGGCTCGTTGT 60.531 55.000 0.00 0.00 0.00 3.32
916 950 0.530650 ACACAGACACAGGCTCGTTG 60.531 55.000 0.00 0.00 0.00 4.10
958 992 4.504826 ACCAAACGAAACAAAATTAAGGCG 59.495 37.500 0.00 0.00 0.00 5.52
1296 4293 6.404074 CCATCTTTGCACTAAATTGGTCTCTC 60.404 42.308 0.00 0.00 31.60 3.20
1508 4505 3.306973 GCTTCTTTTGGACAACAACTTGC 59.693 43.478 0.00 0.00 39.19 4.01
1512 4509 3.801114 AGGCTTCTTTTGGACAACAAC 57.199 42.857 0.00 0.00 39.19 3.32
1513 4510 6.097554 TCAATTAGGCTTCTTTTGGACAACAA 59.902 34.615 0.00 0.00 37.28 2.83
1514 4511 5.596361 TCAATTAGGCTTCTTTTGGACAACA 59.404 36.000 0.00 0.00 0.00 3.33
1555 4555 5.972107 AGCAGACAACTTGCAATCTTAAT 57.028 34.783 0.00 0.00 0.00 1.40
1650 4650 6.092670 GTGATCACTACACAATTACAGTGCAT 59.907 38.462 18.83 0.00 40.59 3.96
1783 4785 4.994852 GTGCTGACACACCTTAAATCAGTA 59.005 41.667 0.00 0.00 46.61 2.74
1785 4787 4.410492 GTGCTGACACACCTTAAATCAG 57.590 45.455 0.00 0.00 46.61 2.90
1805 4807 8.481314 AGTGTAATGATTCATCACTATGACAGT 58.519 33.333 15.65 6.10 41.87 3.55
1806 4808 8.883954 AGTGTAATGATTCATCACTATGACAG 57.116 34.615 15.65 0.00 41.87 3.51
1807 4809 8.477256 TGAGTGTAATGATTCATCACTATGACA 58.523 33.333 16.68 10.31 41.87 3.58
1808 4810 8.877808 TGAGTGTAATGATTCATCACTATGAC 57.122 34.615 16.68 8.50 41.87 3.06
1884 4890 4.757149 GCTTTCGCTAGGATTCATGGTTAT 59.243 41.667 0.00 0.00 0.00 1.89
1894 4900 3.827008 TGATTCAGCTTTCGCTAGGAT 57.173 42.857 0.00 0.00 46.99 3.24
1905 4911 2.494870 GCCACTTTGGAATGATTCAGCT 59.505 45.455 7.56 0.00 40.96 4.24
1951 4961 6.018669 GTCAAACACCAGTCAGAACTCTTAAG 60.019 42.308 0.00 0.00 31.71 1.85
1952 4962 5.815740 GTCAAACACCAGTCAGAACTCTTAA 59.184 40.000 0.00 0.00 31.71 1.85
2004 5023 0.179009 ACACAGCAACAGCATGAGGT 60.179 50.000 0.00 0.00 39.69 3.85
2005 5024 0.240145 CACACAGCAACAGCATGAGG 59.760 55.000 0.00 0.00 39.69 3.86
2235 5261 7.732222 ACAATAATTATTGGCCTTCAGGAAA 57.268 32.000 31.69 0.00 45.54 3.13
2255 5281 8.224720 ACTAAGGTATATATGTGGCCAAACAAT 58.775 33.333 7.24 1.76 32.81 2.71
2335 5425 4.612264 AACAGCAATTCAAAGAAGGCAT 57.388 36.364 8.30 0.00 0.00 4.40
2337 5427 5.532557 AGTTAACAGCAATTCAAAGAAGGC 58.467 37.500 8.61 0.00 0.00 4.35
2338 5428 7.202526 TGAAGTTAACAGCAATTCAAAGAAGG 58.797 34.615 8.61 0.00 0.00 3.46
2339 5429 8.807667 ATGAAGTTAACAGCAATTCAAAGAAG 57.192 30.769 8.61 0.00 33.91 2.85
2383 5473 4.277174 TCAATACAACACGAAGGCATGTTT 59.723 37.500 0.00 0.00 36.92 2.83
2424 5630 4.437390 GCACACAAGGAAAATAGATCACGG 60.437 45.833 0.00 0.00 0.00 4.94
2614 5822 4.021544 TGTGTTGACATTGCTTTATTCCCC 60.022 41.667 0.00 0.00 0.00 4.81
2661 5869 5.310451 AGGAATCTACAAAACGTAAGCCAA 58.690 37.500 0.00 0.00 45.62 4.52
2735 5943 9.765795 AACGTTCTTATATTTCTTCATAGAGGG 57.234 33.333 0.00 0.00 0.00 4.30
2785 5993 9.525826 CCCTCCATAAAGAAATATAAGAGCATT 57.474 33.333 0.00 0.00 0.00 3.56
2786 5994 8.894592 TCCCTCCATAAAGAAATATAAGAGCAT 58.105 33.333 0.00 0.00 0.00 3.79
2787 5995 8.275187 TCCCTCCATAAAGAAATATAAGAGCA 57.725 34.615 0.00 0.00 0.00 4.26
2788 5996 9.746457 ATTCCCTCCATAAAGAAATATAAGAGC 57.254 33.333 0.00 0.00 0.00 4.09
2796 6004 8.502738 TGCTAAGTATTCCCTCCATAAAGAAAT 58.497 33.333 0.00 0.00 0.00 2.17
2797 6005 7.867921 TGCTAAGTATTCCCTCCATAAAGAAA 58.132 34.615 0.00 0.00 0.00 2.52
2798 6006 7.446106 TGCTAAGTATTCCCTCCATAAAGAA 57.554 36.000 0.00 0.00 0.00 2.52
2799 6007 7.633018 ATGCTAAGTATTCCCTCCATAAAGA 57.367 36.000 0.00 0.00 0.00 2.52
2800 6008 9.965902 ATTATGCTAAGTATTCCCTCCATAAAG 57.034 33.333 0.00 0.00 30.60 1.85
2805 6013 9.111519 TGATTATTATGCTAAGTATTCCCTCCA 57.888 33.333 0.00 0.00 0.00 3.86
2834 6042 9.820725 TCAGAGAGAGACTAGTACATTTACTAC 57.179 37.037 0.00 0.00 39.43 2.73
2851 6059 7.069331 ACAGTAATATTCCCTTGTCAGAGAGAG 59.931 40.741 0.00 0.00 0.00 3.20
2872 6080 5.048782 CACAAGGCAGCATCTTAAAACAGTA 60.049 40.000 0.00 0.00 0.00 2.74
3002 6210 5.338365 GCATTAGGAAGATCTTGCTTGTTG 58.662 41.667 31.06 24.38 41.53 3.33
3097 6305 6.749118 GCACAAACTTTCATTCACCATAGATC 59.251 38.462 0.00 0.00 0.00 2.75
3145 6353 8.638565 CATGTTATTGAAGAAACGGAAATCAAC 58.361 33.333 0.00 0.00 33.29 3.18
3225 6595 6.882656 AGACAATGCTATACACAGATGAAGT 58.117 36.000 0.00 0.00 0.00 3.01
3229 6599 6.202379 CCTCAAGACAATGCTATACACAGATG 59.798 42.308 0.00 0.00 0.00 2.90
3295 6682 3.301794 TGGATGCTGCCAAATGAGTAT 57.698 42.857 0.00 0.00 34.31 2.12
3329 6716 9.578576 AAATCTATATGCACTACATTGTGGAAT 57.421 29.630 7.20 1.01 41.34 3.01
3349 6736 9.730420 GCAAAGTTTGACTTCTACAAAAATCTA 57.270 29.630 19.82 0.00 37.47 1.98
3350 6737 7.706607 GGCAAAGTTTGACTTCTACAAAAATCT 59.293 33.333 19.82 0.00 37.47 2.40
3351 6738 7.491048 TGGCAAAGTTTGACTTCTACAAAAATC 59.509 33.333 21.83 0.00 37.47 2.17
3352 6739 7.327214 TGGCAAAGTTTGACTTCTACAAAAAT 58.673 30.769 21.83 0.00 37.47 1.82
3354 6741 6.274157 TGGCAAAGTTTGACTTCTACAAAA 57.726 33.333 21.83 0.00 37.47 2.44
3356 6743 5.417580 AGTTGGCAAAGTTTGACTTCTACAA 59.582 36.000 21.83 4.37 37.47 2.41
3357 6744 4.947388 AGTTGGCAAAGTTTGACTTCTACA 59.053 37.500 21.83 0.00 37.47 2.74
3358 6745 5.500645 AGTTGGCAAAGTTTGACTTCTAC 57.499 39.130 21.83 13.77 37.47 2.59
3359 6746 6.524101 AAAGTTGGCAAAGTTTGACTTCTA 57.476 33.333 21.83 0.00 37.47 2.10
3367 6754 3.971245 TGGTCAAAGTTGGCAAAGTTT 57.029 38.095 0.00 0.42 39.10 2.66
3369 6756 3.525268 CTTGGTCAAAGTTGGCAAAGT 57.475 42.857 0.00 0.00 38.66 2.66
3379 6766 7.925993 TGTTTTCTGTATACACTTGGTCAAAG 58.074 34.615 0.08 0.00 42.07 2.77
3380 6767 7.554835 ACTGTTTTCTGTATACACTTGGTCAAA 59.445 33.333 0.08 0.00 0.00 2.69
3381 6768 7.051623 ACTGTTTTCTGTATACACTTGGTCAA 58.948 34.615 0.08 0.00 0.00 3.18
3383 6770 6.929606 AGACTGTTTTCTGTATACACTTGGTC 59.070 38.462 0.08 4.84 32.26 4.02
3384 6771 6.827727 AGACTGTTTTCTGTATACACTTGGT 58.172 36.000 0.08 0.00 32.26 3.67
3385 6772 7.870954 TGTAGACTGTTTTCTGTATACACTTGG 59.129 37.037 0.08 0.00 44.85 3.61
3386 6773 8.812147 TGTAGACTGTTTTCTGTATACACTTG 57.188 34.615 0.08 0.00 44.85 3.16
3395 6782 9.640963 GTATTGTAGATGTAGACTGTTTTCTGT 57.359 33.333 0.00 0.00 34.75 3.41
3396 6783 9.862371 AGTATTGTAGATGTAGACTGTTTTCTG 57.138 33.333 0.00 0.00 0.00 3.02
3425 6812 9.725019 TGAGTTCTATTTTCAGAATGTACATGT 57.275 29.630 9.63 2.69 36.93 3.21
3428 6815 9.942850 TCATGAGTTCTATTTTCAGAATGTACA 57.057 29.630 0.00 0.00 36.93 2.90
3431 6818 9.458727 ACATCATGAGTTCTATTTTCAGAATGT 57.541 29.630 0.09 0.00 36.93 2.71
3435 6822 9.770097 GGATACATCATGAGTTCTATTTTCAGA 57.230 33.333 0.09 0.00 0.00 3.27
3436 6823 9.551734 TGGATACATCATGAGTTCTATTTTCAG 57.448 33.333 0.09 0.00 46.17 3.02
3456 6843 5.266733 ACCAAATGCACATCATTGGATAC 57.733 39.130 17.12 0.00 44.23 2.24
3457 6844 7.506599 AGAATACCAAATGCACATCATTGGATA 59.493 33.333 17.12 8.79 44.23 2.59
3458 6845 6.325545 AGAATACCAAATGCACATCATTGGAT 59.674 34.615 17.12 6.97 44.23 3.41
3459 6846 5.657745 AGAATACCAAATGCACATCATTGGA 59.342 36.000 17.12 5.42 44.23 3.53
3460 6847 5.909477 AGAATACCAAATGCACATCATTGG 58.091 37.500 11.02 11.02 44.23 3.16
3461 6848 7.933396 TCTAGAATACCAAATGCACATCATTG 58.067 34.615 0.00 0.00 44.23 2.82
3462 6849 8.573885 CATCTAGAATACCAAATGCACATCATT 58.426 33.333 0.00 0.00 46.82 2.57
3463 6850 7.722728 ACATCTAGAATACCAAATGCACATCAT 59.277 33.333 0.00 0.00 36.87 2.45
3464 6851 7.056006 ACATCTAGAATACCAAATGCACATCA 58.944 34.615 0.00 0.00 0.00 3.07
3465 6852 7.502120 ACATCTAGAATACCAAATGCACATC 57.498 36.000 0.00 0.00 0.00 3.06
3466 6853 7.445402 GGTACATCTAGAATACCAAATGCACAT 59.555 37.037 22.87 0.00 38.61 3.21
3467 6854 6.765989 GGTACATCTAGAATACCAAATGCACA 59.234 38.462 22.87 0.00 38.61 4.57
3468 6855 6.992715 AGGTACATCTAGAATACCAAATGCAC 59.007 38.462 26.72 9.05 40.81 4.57
3469 6856 7.136822 AGGTACATCTAGAATACCAAATGCA 57.863 36.000 26.72 0.00 40.81 3.96
3470 6857 9.726438 AATAGGTACATCTAGAATACCAAATGC 57.274 33.333 26.72 8.98 40.81 3.56
3508 6895 9.691362 GTCAAACATTACAAACTTTGACCATAT 57.309 29.630 8.55 0.00 43.35 1.78
3514 6901 9.243637 GCAATAGTCAAACATTACAAACTTTGA 57.756 29.630 8.55 0.00 31.68 2.69
3515 6902 9.029243 TGCAATAGTCAAACATTACAAACTTTG 57.971 29.630 0.00 0.00 0.00 2.77
3516 6903 9.593134 TTGCAATAGTCAAACATTACAAACTTT 57.407 25.926 0.00 0.00 0.00 2.66
3517 6904 9.593134 TTTGCAATAGTCAAACATTACAAACTT 57.407 25.926 0.00 0.00 27.62 2.66
3518 6905 9.593134 TTTTGCAATAGTCAAACATTACAAACT 57.407 25.926 0.00 0.00 30.75 2.66
3522 6909 9.979578 AGATTTTTGCAATAGTCAAACATTACA 57.020 25.926 13.34 0.00 33.66 2.41
3528 6915 9.237846 GCCTATAGATTTTTGCAATAGTCAAAC 57.762 33.333 13.34 1.79 33.66 2.93
3529 6916 8.128582 CGCCTATAGATTTTTGCAATAGTCAAA 58.871 33.333 13.34 5.60 0.00 2.69
3530 6917 7.639039 CGCCTATAGATTTTTGCAATAGTCAA 58.361 34.615 13.34 0.00 0.00 3.18
3531 6918 6.293407 GCGCCTATAGATTTTTGCAATAGTCA 60.293 38.462 13.34 2.41 0.00 3.41
3532 6919 6.073003 AGCGCCTATAGATTTTTGCAATAGTC 60.073 38.462 2.29 1.64 0.00 2.59
3533 6920 5.765182 AGCGCCTATAGATTTTTGCAATAGT 59.235 36.000 2.29 0.00 0.00 2.12
3534 6921 6.246420 AGCGCCTATAGATTTTTGCAATAG 57.754 37.500 2.29 0.00 0.00 1.73
3535 6922 6.708502 TGTAGCGCCTATAGATTTTTGCAATA 59.291 34.615 2.29 0.00 0.00 1.90
3536 6923 5.530915 TGTAGCGCCTATAGATTTTTGCAAT 59.469 36.000 2.29 0.00 0.00 3.56
3537 6924 4.878971 TGTAGCGCCTATAGATTTTTGCAA 59.121 37.500 2.29 0.00 0.00 4.08
3538 6925 4.447290 TGTAGCGCCTATAGATTTTTGCA 58.553 39.130 2.29 0.00 0.00 4.08
3539 6926 5.613358 ATGTAGCGCCTATAGATTTTTGC 57.387 39.130 2.29 0.00 0.00 3.68
3540 6927 7.379529 CCAAAATGTAGCGCCTATAGATTTTTG 59.620 37.037 15.76 14.19 32.79 2.44
3541 6928 7.284489 TCCAAAATGTAGCGCCTATAGATTTTT 59.716 33.333 15.76 5.80 0.00 1.94
3542 6929 6.770785 TCCAAAATGTAGCGCCTATAGATTTT 59.229 34.615 13.74 13.74 0.00 1.82
3543 6930 6.296026 TCCAAAATGTAGCGCCTATAGATTT 58.704 36.000 2.29 4.04 0.00 2.17
3544 6931 5.865085 TCCAAAATGTAGCGCCTATAGATT 58.135 37.500 2.29 0.00 0.00 2.40
3545 6932 5.483685 TCCAAAATGTAGCGCCTATAGAT 57.516 39.130 2.29 0.00 0.00 1.98
3546 6933 4.948341 TCCAAAATGTAGCGCCTATAGA 57.052 40.909 2.29 0.00 0.00 1.98
3547 6934 4.084537 CGTTCCAAAATGTAGCGCCTATAG 60.085 45.833 2.29 0.00 0.00 1.31
3548 6935 3.805422 CGTTCCAAAATGTAGCGCCTATA 59.195 43.478 2.29 0.00 0.00 1.31
3549 6936 2.612212 CGTTCCAAAATGTAGCGCCTAT 59.388 45.455 2.29 0.00 0.00 2.57
3550 6937 2.004017 CGTTCCAAAATGTAGCGCCTA 58.996 47.619 2.29 0.00 0.00 3.93
3551 6938 0.802494 CGTTCCAAAATGTAGCGCCT 59.198 50.000 2.29 0.00 0.00 5.52
3552 6939 0.179174 CCGTTCCAAAATGTAGCGCC 60.179 55.000 2.29 0.00 0.00 6.53
3553 6940 0.800012 TCCGTTCCAAAATGTAGCGC 59.200 50.000 0.00 0.00 0.00 5.92
3554 6941 1.396996 CCTCCGTTCCAAAATGTAGCG 59.603 52.381 0.00 0.00 0.00 4.26
3555 6942 1.743394 CCCTCCGTTCCAAAATGTAGC 59.257 52.381 0.00 0.00 0.00 3.58
3556 6943 3.270877 CTCCCTCCGTTCCAAAATGTAG 58.729 50.000 0.00 0.00 0.00 2.74
3557 6944 2.640826 ACTCCCTCCGTTCCAAAATGTA 59.359 45.455 0.00 0.00 0.00 2.29
3558 6945 1.423921 ACTCCCTCCGTTCCAAAATGT 59.576 47.619 0.00 0.00 0.00 2.71
3559 6946 2.200373 ACTCCCTCCGTTCCAAAATG 57.800 50.000 0.00 0.00 0.00 2.32
3591 6978 7.486407 AAATTGAGTCATTATGGAAAAGGCT 57.514 32.000 0.00 0.00 0.00 4.58
3646 7034 4.754114 GCTCTGGATGTACCTGAAATGATC 59.246 45.833 0.00 0.00 44.02 2.92
3833 7221 9.202273 GCACTAATTCAAAACCATCAAATGTTA 57.798 29.630 0.00 0.00 0.00 2.41
3838 7226 7.550551 TGTTTGCACTAATTCAAAACCATCAAA 59.449 29.630 0.00 0.00 34.44 2.69
3892 7280 6.126332 TGCCAGGTATAGTTTATTTCCATGGA 60.126 38.462 11.44 11.44 0.00 3.41
3893 7281 6.068010 TGCCAGGTATAGTTTATTTCCATGG 58.932 40.000 4.97 4.97 0.00 3.66
3908 7296 6.935240 TCATATACTAAAGCTGCCAGGTAT 57.065 37.500 0.00 3.55 0.00 2.73
3940 7328 8.072321 ACAATAGAAGAGAAAGATGCAGACTA 57.928 34.615 0.00 0.00 0.00 2.59
3944 7332 6.093771 AGCAACAATAGAAGAGAAAGATGCAG 59.906 38.462 0.00 0.00 0.00 4.41
3972 7360 7.652507 ACGAGAGGAAAAACAGAGTAAAACTAG 59.347 37.037 0.00 0.00 0.00 2.57
3997 7385 0.179215 CAATCGAGCAAGACGCCAAC 60.179 55.000 0.00 0.00 44.04 3.77
4002 7390 2.069273 AGAAACCAATCGAGCAAGACG 58.931 47.619 0.00 0.00 0.00 4.18
4049 7437 6.475076 CGAGATGCTTCAAGCCTATATATCAC 59.525 42.308 7.01 0.00 41.51 3.06
4282 7670 2.486982 GAGTGGCGAGTACAGAGTACAA 59.513 50.000 9.68 0.00 0.00 2.41
4402 7790 3.057876 CGTTGTTTCGGGATGGAAAATGA 60.058 43.478 0.00 0.00 37.63 2.57
4446 7834 0.685458 AGACCATGCAATGCCCCTTC 60.685 55.000 1.53 0.00 44.97 3.46
4530 7918 3.253921 AGCGTGTTGGTAATTTGGGTAAC 59.746 43.478 0.00 0.00 0.00 2.50
4533 7921 1.989706 AGCGTGTTGGTAATTTGGGT 58.010 45.000 0.00 0.00 0.00 4.51
4539 7927 3.688694 TTCCAGTAGCGTGTTGGTAAT 57.311 42.857 0.00 0.00 33.65 1.89
4554 7942 3.621715 GGTACAGCGTTTCCTATTTCCAG 59.378 47.826 0.00 0.00 0.00 3.86
4570 7958 2.479837 TGCGAGTGTTGAAAGGTACAG 58.520 47.619 0.00 0.00 0.00 2.74
4572 7960 3.064207 TGATGCGAGTGTTGAAAGGTAC 58.936 45.455 0.00 0.00 0.00 3.34
4573 7961 3.325870 CTGATGCGAGTGTTGAAAGGTA 58.674 45.455 0.00 0.00 0.00 3.08
4597 7985 4.717629 TCCGCAGCCACGTCTTCG 62.718 66.667 0.00 0.00 43.34 3.79
4618 8006 4.410743 GAAACGCAGGCAGGCAGC 62.411 66.667 0.56 0.56 44.65 5.25
4622 8010 3.726517 CGTGGAAACGCAGGCAGG 61.727 66.667 0.00 0.00 42.37 4.85
4645 8033 0.550914 TGTGGCTCTTTCAACCAGGT 59.449 50.000 0.00 0.00 33.12 4.00
4646 8034 1.542915 CATGTGGCTCTTTCAACCAGG 59.457 52.381 0.00 0.00 33.12 4.45
4647 8035 2.507484 TCATGTGGCTCTTTCAACCAG 58.493 47.619 0.00 0.00 33.12 4.00
4648 8036 2.655090 TCATGTGGCTCTTTCAACCA 57.345 45.000 0.00 0.00 0.00 3.67
4674 8080 7.201548 CCAGCCTAAAATGACATAAATTGCAAC 60.202 37.037 0.00 0.00 0.00 4.17
4675 8081 6.817641 CCAGCCTAAAATGACATAAATTGCAA 59.182 34.615 0.00 0.00 0.00 4.08
4677 8083 6.476706 GTCCAGCCTAAAATGACATAAATTGC 59.523 38.462 0.00 0.00 0.00 3.56
4699 8105 2.615240 GGGGGTGAATTTTGCATTGTCC 60.615 50.000 0.00 0.00 0.00 4.02
4704 8110 2.028561 AGTGGGGGTGAATTTTGCAT 57.971 45.000 0.00 0.00 0.00 3.96
4709 8115 2.525368 GTGCTTAGTGGGGGTGAATTT 58.475 47.619 0.00 0.00 0.00 1.82
4786 9453 4.436998 CTCCGGCCGACCAGTGAC 62.437 72.222 30.73 0.00 34.57 3.67
4791 9458 2.043752 TCATACTCCGGCCGACCA 60.044 61.111 30.73 9.20 34.57 4.02
4796 9463 0.315568 CTAGCACTCATACTCCGGCC 59.684 60.000 0.00 0.00 0.00 6.13
4799 9466 0.039978 CCGCTAGCACTCATACTCCG 60.040 60.000 16.45 0.00 0.00 4.63
4806 9473 3.774528 CAGCCCCGCTAGCACTCA 61.775 66.667 16.45 0.00 36.40 3.41
4822 9489 1.769716 TTCCCACGGCATACACACCA 61.770 55.000 0.00 0.00 0.00 4.17
4829 9496 0.254747 CCTTTCCTTCCCACGGCATA 59.745 55.000 0.00 0.00 0.00 3.14
4830 9497 1.000896 CCTTTCCTTCCCACGGCAT 60.001 57.895 0.00 0.00 0.00 4.40
4831 9498 1.497309 ATCCTTTCCTTCCCACGGCA 61.497 55.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.