Multiple sequence alignment - TraesCS1B01G316800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G316800 chr1B 100.000 5233 0 0 1 5233 541020534 541015302 0.000000e+00 9664.0
1 TraesCS1B01G316800 chr1B 82.281 903 148 4 4331 5233 95364024 95363134 0.000000e+00 771.0
2 TraesCS1B01G316800 chr1A 92.322 1628 87 18 2492 4100 498178571 498176963 0.000000e+00 2279.0
3 TraesCS1B01G316800 chr1A 91.794 1109 51 15 957 2046 498180435 498179348 0.000000e+00 1507.0
4 TraesCS1B01G316800 chr1A 97.619 420 10 0 2056 2475 498179125 498178706 0.000000e+00 721.0
5 TraesCS1B01G316800 chr1A 87.755 196 8 5 4148 4327 498176729 498176534 1.140000e-51 215.0
6 TraesCS1B01G316800 chr1A 83.682 239 21 7 3271 3491 62255945 62255707 5.310000e-50 209.0
7 TraesCS1B01G316800 chr1A 82.203 236 24 4 3271 3488 523109940 523109705 2.490000e-43 187.0
8 TraesCS1B01G316800 chr1A 98.000 50 1 0 4101 4150 498176833 498176784 2.600000e-13 87.9
9 TraesCS1B01G316800 chr1D 93.016 1217 54 13 831 2046 403066434 403065248 0.000000e+00 1748.0
10 TraesCS1B01G316800 chr1D 94.816 868 38 3 2050 2915 403065194 403064332 0.000000e+00 1347.0
11 TraesCS1B01G316800 chr1D 92.749 331 24 0 2922 3252 403064295 403063965 3.670000e-131 479.0
12 TraesCS1B01G316800 chr1D 87.228 368 22 6 3791 4150 403061654 403061304 3.800000e-106 396.0
13 TraesCS1B01G316800 chr1D 84.942 259 17 8 3264 3501 58870662 58870919 5.240000e-60 243.0
14 TraesCS1B01G316800 chr1D 86.842 190 10 3 4153 4327 403061243 403061054 1.150000e-46 198.0
15 TraesCS1B01G316800 chr1D 85.437 103 6 7 3483 3585 403063967 403063874 1.200000e-16 99.0
16 TraesCS1B01G316800 chr6D 91.916 903 72 1 4331 5233 82243436 82244337 0.000000e+00 1262.0
17 TraesCS1B01G316800 chr6D 87.708 903 110 1 4331 5233 34517771 34516870 0.000000e+00 1051.0
18 TraesCS1B01G316800 chr7D 91.131 902 72 1 4331 5232 213368248 213369141 0.000000e+00 1216.0
19 TraesCS1B01G316800 chr7D 86.131 137 18 1 5097 5233 418390327 418390462 4.220000e-31 147.0
20 TraesCS1B01G316800 chr2D 87.154 903 116 0 4331 5233 414991451 414992353 0.000000e+00 1026.0
21 TraesCS1B01G316800 chr2D 82.225 692 93 15 1 672 420980357 420979676 2.110000e-158 569.0
22 TraesCS1B01G316800 chr2D 81.719 640 95 12 1 628 157403647 157404276 1.000000e-141 514.0
23 TraesCS1B01G316800 chr2D 84.562 434 63 2 5 435 168582083 168581651 1.350000e-115 427.0
24 TraesCS1B01G316800 chr2D 79.701 468 73 14 193 642 617759205 617759668 8.460000e-83 318.0
25 TraesCS1B01G316800 chr2D 78.049 533 86 18 182 691 617886377 617886901 1.830000e-79 307.0
26 TraesCS1B01G316800 chr4D 86.704 895 84 21 2044 2915 318495459 318494577 0.000000e+00 961.0
27 TraesCS1B01G316800 chr4D 85.868 559 65 9 1320 1875 318496244 318495697 2.720000e-162 582.0
28 TraesCS1B01G316800 chr4D 79.595 642 98 21 110 734 368700052 368699427 3.740000e-116 429.0
29 TraesCS1B01G316800 chr4D 86.707 331 31 5 2922 3252 318494535 318494218 6.450000e-94 355.0
30 TraesCS1B01G316800 chr4D 82.412 199 23 7 1136 1333 318496460 318496273 4.190000e-36 163.0
31 TraesCS1B01G316800 chr5D 84.845 904 136 1 4331 5233 246282424 246281521 0.000000e+00 909.0
32 TraesCS1B01G316800 chr5D 94.805 154 8 0 3265 3418 279292893 279293046 1.880000e-59 241.0
33 TraesCS1B01G316800 chr4A 89.720 535 48 4 2044 2572 155832723 155832190 0.000000e+00 676.0
34 TraesCS1B01G316800 chr4A 84.879 701 71 21 2145 2825 12695015 12694330 0.000000e+00 675.0
35 TraesCS1B01G316800 chr4A 81.818 759 91 25 1315 2043 155833509 155832768 1.250000e-165 593.0
36 TraesCS1B01G316800 chr4A 80.135 594 88 19 1477 2046 12731819 12731232 2.920000e-112 416.0
37 TraesCS1B01G316800 chr4A 86.970 330 30 5 2926 3255 155830118 155829802 4.980000e-95 359.0
38 TraesCS1B01G316800 chr4A 90.037 271 25 2 2645 2915 155830428 155830160 3.000000e-92 350.0
39 TraesCS1B01G316800 chr4A 83.333 204 22 7 1121 1323 155833729 155833537 1.500000e-40 178.0
40 TraesCS1B01G316800 chr4B 83.058 726 80 26 1315 2010 395820584 395819872 2.070000e-173 619.0
41 TraesCS1B01G316800 chr4B 93.062 418 29 0 2044 2461 395819796 395819379 3.460000e-171 612.0
42 TraesCS1B01G316800 chr4B 81.805 698 89 27 6 677 192697542 192698227 7.660000e-153 551.0
43 TraesCS1B01G316800 chr4B 81.845 672 88 28 42 691 192693932 192694591 7.710000e-148 534.0
44 TraesCS1B01G316800 chr4B 85.323 402 52 6 1478 1875 223382327 223382725 4.880000e-110 409.0
45 TraesCS1B01G316800 chr4B 83.144 439 44 22 2486 2905 395819190 395818763 1.780000e-99 374.0
46 TraesCS1B01G316800 chr4B 87.311 331 29 5 2922 3252 395818711 395818394 2.980000e-97 366.0
47 TraesCS1B01G316800 chr4B 82.028 217 22 11 1119 1333 395820809 395820608 9.010000e-38 169.0
48 TraesCS1B01G316800 chr5A 82.033 718 91 25 1 691 88672202 88671496 1.260000e-160 577.0
49 TraesCS1B01G316800 chr3D 81.570 586 84 17 42 610 98786254 98786832 3.690000e-126 462.0
50 TraesCS1B01G316800 chr5B 77.964 776 125 30 1 758 583908648 583907901 1.340000e-120 444.0
51 TraesCS1B01G316800 chr5B 88.542 192 18 3 3265 3454 473912900 473912711 4.080000e-56 230.0
52 TraesCS1B01G316800 chr2B 80.808 594 84 19 1478 2046 758095719 758096307 6.220000e-119 438.0
53 TraesCS1B01G316800 chr2B 84.065 433 65 3 1 433 493640912 493640484 1.050000e-111 414.0
54 TraesCS1B01G316800 chr2B 77.311 595 106 13 4 576 750028974 750028387 1.820000e-84 324.0
55 TraesCS1B01G316800 chr2B 87.083 240 13 6 3264 3485 723031707 723031946 6.720000e-64 255.0
56 TraesCS1B01G316800 chr6B 85.608 403 51 6 1477 1875 264115 263716 2.920000e-112 416.0
57 TraesCS1B01G316800 chr6B 88.889 189 17 3 3271 3458 20708793 20708978 4.080000e-56 230.0
58 TraesCS1B01G316800 chr6B 88.889 189 17 3 3271 3458 20949238 20949423 4.080000e-56 230.0
59 TraesCS1B01G316800 chrUn 87.387 222 27 1 3265 3485 105423963 105424184 2.420000e-63 254.0
60 TraesCS1B01G316800 chr3B 85.650 223 28 3 3271 3492 367385786 367386005 1.130000e-56 231.0
61 TraesCS1B01G316800 chr6A 86.700 203 25 2 3270 3470 41668087 41667885 1.900000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G316800 chr1B 541015302 541020534 5232 True 9664.000000 9664 100.000000 1 5233 1 chr1B.!!$R2 5232
1 TraesCS1B01G316800 chr1B 95363134 95364024 890 True 771.000000 771 82.281000 4331 5233 1 chr1B.!!$R1 902
2 TraesCS1B01G316800 chr1A 498176534 498180435 3901 True 961.980000 2279 93.498000 957 4327 5 chr1A.!!$R3 3370
3 TraesCS1B01G316800 chr1D 403061054 403066434 5380 True 711.166667 1748 90.014667 831 4327 6 chr1D.!!$R1 3496
4 TraesCS1B01G316800 chr6D 82243436 82244337 901 False 1262.000000 1262 91.916000 4331 5233 1 chr6D.!!$F1 902
5 TraesCS1B01G316800 chr6D 34516870 34517771 901 True 1051.000000 1051 87.708000 4331 5233 1 chr6D.!!$R1 902
6 TraesCS1B01G316800 chr7D 213368248 213369141 893 False 1216.000000 1216 91.131000 4331 5232 1 chr7D.!!$F1 901
7 TraesCS1B01G316800 chr2D 414991451 414992353 902 False 1026.000000 1026 87.154000 4331 5233 1 chr2D.!!$F2 902
8 TraesCS1B01G316800 chr2D 420979676 420980357 681 True 569.000000 569 82.225000 1 672 1 chr2D.!!$R2 671
9 TraesCS1B01G316800 chr2D 157403647 157404276 629 False 514.000000 514 81.719000 1 628 1 chr2D.!!$F1 627
10 TraesCS1B01G316800 chr2D 617886377 617886901 524 False 307.000000 307 78.049000 182 691 1 chr2D.!!$F4 509
11 TraesCS1B01G316800 chr4D 318494218 318496460 2242 True 515.250000 961 85.422750 1136 3252 4 chr4D.!!$R2 2116
12 TraesCS1B01G316800 chr4D 368699427 368700052 625 True 429.000000 429 79.595000 110 734 1 chr4D.!!$R1 624
13 TraesCS1B01G316800 chr5D 246281521 246282424 903 True 909.000000 909 84.845000 4331 5233 1 chr5D.!!$R1 902
14 TraesCS1B01G316800 chr4A 12694330 12695015 685 True 675.000000 675 84.879000 2145 2825 1 chr4A.!!$R1 680
15 TraesCS1B01G316800 chr4A 155829802 155833729 3927 True 431.200000 676 86.375600 1121 3255 5 chr4A.!!$R3 2134
16 TraesCS1B01G316800 chr4A 12731232 12731819 587 True 416.000000 416 80.135000 1477 2046 1 chr4A.!!$R2 569
17 TraesCS1B01G316800 chr4B 192693932 192698227 4295 False 542.500000 551 81.825000 6 691 2 chr4B.!!$F2 685
18 TraesCS1B01G316800 chr4B 395818394 395820809 2415 True 428.000000 619 85.720600 1119 3252 5 chr4B.!!$R1 2133
19 TraesCS1B01G316800 chr5A 88671496 88672202 706 True 577.000000 577 82.033000 1 691 1 chr5A.!!$R1 690
20 TraesCS1B01G316800 chr3D 98786254 98786832 578 False 462.000000 462 81.570000 42 610 1 chr3D.!!$F1 568
21 TraesCS1B01G316800 chr5B 583907901 583908648 747 True 444.000000 444 77.964000 1 758 1 chr5B.!!$R2 757
22 TraesCS1B01G316800 chr2B 758095719 758096307 588 False 438.000000 438 80.808000 1478 2046 1 chr2B.!!$F2 568
23 TraesCS1B01G316800 chr2B 750028387 750028974 587 True 324.000000 324 77.311000 4 576 1 chr2B.!!$R2 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 4413 0.031449 CAAACGGACAAAATGGGCGT 59.969 50.0 0.0 0.0 0.0 5.68 F
766 4415 0.031449 AACGGACAAAATGGGCGTTG 59.969 50.0 0.0 0.0 0.0 4.10 F
773 4422 0.033366 AAAATGGGCGTTGGAGTTGC 59.967 50.0 0.0 0.0 0.0 4.17 F
785 4434 0.179234 GGAGTTGCTCTAAGAGGCCC 59.821 60.0 0.0 0.0 0.0 5.80 F
2341 6345 0.321919 TGCCTCTGGTGCTGACATTC 60.322 55.0 0.0 0.0 0.0 2.67 F
3157 9187 0.335361 AGGAAGAAGAGGAGGCGGTA 59.665 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2685 8680 1.059098 AGTCTTGCATCCACTGGTCA 58.941 50.000 0.00 0.0 0.00 4.02 R
2795 8790 1.986378 CTCCAACAGAGCGTAGTTTCG 59.014 52.381 0.00 0.0 35.31 3.46 R
3123 9153 0.611062 TTCCTCCTCGTCCACATCGT 60.611 55.000 0.00 0.0 0.00 3.73 R
3157 9187 4.836825 TCTCGCAAAATCTGAAATCCTCT 58.163 39.130 0.00 0.0 0.00 3.69 R
4208 12512 0.669318 AATCAATGGCGTCACGTCGT 60.669 50.000 0.00 0.0 32.50 4.34 R
5114 13434 0.457166 CCGCCATGACGTCGTTCTTA 60.457 55.000 7.76 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 3712 6.992664 AGCTGATGTTATCTATCCTCAGTT 57.007 37.500 0.00 0.00 34.13 3.16
100 3717 7.720442 TGATGTTATCTATCCTCAGTTGACTG 58.280 38.462 4.77 4.77 45.08 3.51
102 3719 5.163405 TGTTATCTATCCTCAGTTGACTGCC 60.163 44.000 6.27 0.00 43.46 4.85
103 3720 3.107402 TCTATCCTCAGTTGACTGCCT 57.893 47.619 6.27 0.00 43.46 4.75
107 3724 1.768275 TCCTCAGTTGACTGCCTTTGA 59.232 47.619 6.27 0.00 43.46 2.69
125 3742 4.387026 TTGACAAGACAATCCCCAATCT 57.613 40.909 0.00 0.00 0.00 2.40
156 3773 5.363580 AGAGAAGAGGCAGAGATTTTCCTAG 59.636 44.000 0.00 0.00 0.00 3.02
179 3796 3.594134 CACAAGAGAGTGCTAGAAAGGG 58.406 50.000 0.00 0.00 32.04 3.95
191 3808 1.070786 GAAAGGGTGTGGAGCGTGA 59.929 57.895 0.00 0.00 0.00 4.35
232 3849 2.795329 GATGGGGCATCATTCGGTATT 58.205 47.619 0.00 0.00 40.28 1.89
282 3899 1.028868 GGGAGGTGATGACTGCTTGC 61.029 60.000 0.00 0.00 0.00 4.01
292 3909 1.081892 GACTGCTTGCGTGATCATGT 58.918 50.000 16.18 0.00 0.00 3.21
334 3953 6.407412 GGATGAGTGTGAGGATGAAATCTACA 60.407 42.308 0.00 0.00 44.71 2.74
335 3954 6.550938 TGAGTGTGAGGATGAAATCTACAT 57.449 37.500 0.00 0.00 44.71 2.29
354 3973 5.885449 ACATTCAGGGGTTTCAATTTCAA 57.115 34.783 0.00 0.00 0.00 2.69
420 4039 4.913924 GCACAGTTCACTGAATTTCATCAC 59.086 41.667 14.00 0.00 46.59 3.06
508 4137 7.062749 ACCAATAGATGTATCGGCTCTTTTA 57.937 36.000 0.00 0.00 0.00 1.52
509 4138 7.680730 ACCAATAGATGTATCGGCTCTTTTAT 58.319 34.615 0.00 0.00 0.00 1.40
510 4139 7.819900 ACCAATAGATGTATCGGCTCTTTTATC 59.180 37.037 0.00 0.00 0.00 1.75
614 4259 9.469807 GATGTTTGTATTTGGTTGAATTGTGTA 57.530 29.630 0.00 0.00 0.00 2.90
616 4261 9.088512 TGTTTGTATTTGGTTGAATTGTGTAAC 57.911 29.630 0.00 0.00 37.35 2.50
618 4263 5.915758 TGTATTTGGTTGAATTGTGTAACGC 59.084 36.000 0.00 0.00 42.39 4.84
628 4277 0.878416 TGTGTAACGCTGGGCAATTC 59.122 50.000 0.00 0.00 42.39 2.17
630 4279 1.539827 GTGTAACGCTGGGCAATTCTT 59.460 47.619 0.00 0.00 0.00 2.52
635 4284 1.000274 ACGCTGGGCAATTCTTTTGAC 60.000 47.619 0.00 0.00 0.00 3.18
640 4289 4.321899 GCTGGGCAATTCTTTTGACATGTA 60.322 41.667 0.00 0.00 0.00 2.29
641 4290 5.132897 TGGGCAATTCTTTTGACATGTAC 57.867 39.130 0.00 0.00 0.00 2.90
642 4291 4.586421 TGGGCAATTCTTTTGACATGTACA 59.414 37.500 0.00 0.00 0.00 2.90
643 4292 5.163513 GGGCAATTCTTTTGACATGTACAG 58.836 41.667 0.00 0.00 0.00 2.74
649 4298 9.734620 CAATTCTTTTGACATGTACAGAAAAGA 57.265 29.630 20.15 20.15 39.62 2.52
650 4299 9.956720 AATTCTTTTGACATGTACAGAAAAGAG 57.043 29.630 21.55 11.55 41.33 2.85
651 4300 8.731275 TTCTTTTGACATGTACAGAAAAGAGA 57.269 30.769 21.55 12.96 41.33 3.10
653 4302 8.830580 TCTTTTGACATGTACAGAAAAGAGAAG 58.169 33.333 20.15 10.93 37.59 2.85
675 4324 1.846007 AAAAATGGCCGCATACCAGA 58.154 45.000 0.00 0.00 41.46 3.86
676 4325 1.102978 AAAATGGCCGCATACCAGAC 58.897 50.000 0.00 0.00 41.46 3.51
677 4326 1.095228 AAATGGCCGCATACCAGACG 61.095 55.000 0.00 0.00 41.46 4.18
678 4327 4.830765 TGGCCGCATACCAGACGC 62.831 66.667 0.00 0.00 32.06 5.19
679 4328 4.530857 GGCCGCATACCAGACGCT 62.531 66.667 0.00 0.00 0.00 5.07
680 4329 2.962253 GCCGCATACCAGACGCTC 60.962 66.667 0.00 0.00 0.00 5.03
681 4330 2.655364 CCGCATACCAGACGCTCG 60.655 66.667 0.00 0.00 0.00 5.03
682 4331 2.407616 CGCATACCAGACGCTCGA 59.592 61.111 0.00 0.00 0.00 4.04
683 4332 1.939785 CGCATACCAGACGCTCGAC 60.940 63.158 0.00 0.00 0.00 4.20
695 4344 3.949313 GCTCGACGAAAATGTGTCC 57.051 52.632 0.00 0.00 0.00 4.02
696 4345 0.093026 GCTCGACGAAAATGTGTCCG 59.907 55.000 0.00 0.00 0.00 4.79
697 4346 0.093026 CTCGACGAAAATGTGTCCGC 59.907 55.000 0.00 0.00 0.00 5.54
698 4347 0.597898 TCGACGAAAATGTGTCCGCA 60.598 50.000 0.00 0.00 0.00 5.69
699 4348 0.442310 CGACGAAAATGTGTCCGCAT 59.558 50.000 0.00 0.00 0.00 4.73
700 4349 1.786575 CGACGAAAATGTGTCCGCATG 60.787 52.381 0.00 0.00 0.00 4.06
701 4350 1.196808 GACGAAAATGTGTCCGCATGT 59.803 47.619 0.00 0.00 0.00 3.21
702 4351 1.606668 ACGAAAATGTGTCCGCATGTT 59.393 42.857 0.00 0.00 0.00 2.71
703 4352 1.978097 CGAAAATGTGTCCGCATGTTG 59.022 47.619 1.10 0.00 0.00 3.33
704 4353 2.327568 GAAAATGTGTCCGCATGTTGG 58.672 47.619 1.10 0.00 0.00 3.77
705 4354 1.327303 AAATGTGTCCGCATGTTGGT 58.673 45.000 6.10 0.00 0.00 3.67
706 4355 0.881118 AATGTGTCCGCATGTTGGTC 59.119 50.000 6.10 2.07 0.00 4.02
707 4356 1.298157 ATGTGTCCGCATGTTGGTCG 61.298 55.000 6.10 0.00 0.00 4.79
708 4357 3.047280 TGTCCGCATGTTGGTCGC 61.047 61.111 6.10 0.00 0.00 5.19
709 4358 3.047280 GTCCGCATGTTGGTCGCA 61.047 61.111 6.10 0.00 0.00 5.10
710 4359 3.047280 TCCGCATGTTGGTCGCAC 61.047 61.111 6.10 0.00 0.00 5.34
711 4360 3.049674 CCGCATGTTGGTCGCACT 61.050 61.111 0.00 0.00 0.00 4.40
712 4361 1.739929 CCGCATGTTGGTCGCACTA 60.740 57.895 0.00 0.00 0.00 2.74
713 4362 1.089481 CCGCATGTTGGTCGCACTAT 61.089 55.000 0.00 0.00 0.00 2.12
714 4363 0.301687 CGCATGTTGGTCGCACTATC 59.698 55.000 0.00 0.00 0.00 2.08
715 4364 1.368641 GCATGTTGGTCGCACTATCA 58.631 50.000 0.00 0.00 0.00 2.15
716 4365 1.737236 GCATGTTGGTCGCACTATCAA 59.263 47.619 0.00 0.00 0.00 2.57
717 4366 2.476185 GCATGTTGGTCGCACTATCAAC 60.476 50.000 0.00 0.00 39.68 3.18
718 4367 2.831685 TGTTGGTCGCACTATCAACT 57.168 45.000 7.95 0.00 39.87 3.16
719 4368 2.683968 TGTTGGTCGCACTATCAACTC 58.316 47.619 7.95 0.00 39.87 3.01
720 4369 2.036604 TGTTGGTCGCACTATCAACTCA 59.963 45.455 7.95 0.00 39.87 3.41
721 4370 3.064207 GTTGGTCGCACTATCAACTCAA 58.936 45.455 0.00 0.00 37.21 3.02
722 4371 3.394674 TGGTCGCACTATCAACTCAAA 57.605 42.857 0.00 0.00 0.00 2.69
723 4372 3.064207 TGGTCGCACTATCAACTCAAAC 58.936 45.455 0.00 0.00 0.00 2.93
724 4373 2.092211 GGTCGCACTATCAACTCAAACG 59.908 50.000 0.00 0.00 0.00 3.60
725 4374 1.724623 TCGCACTATCAACTCAAACGC 59.275 47.619 0.00 0.00 0.00 4.84
726 4375 1.524986 CGCACTATCAACTCAAACGCG 60.525 52.381 3.53 3.53 0.00 6.01
727 4376 1.201921 GCACTATCAACTCAAACGCGG 60.202 52.381 12.47 0.00 0.00 6.46
728 4377 2.333926 CACTATCAACTCAAACGCGGA 58.666 47.619 12.47 0.00 0.00 5.54
729 4378 2.930040 CACTATCAACTCAAACGCGGAT 59.070 45.455 12.47 3.04 0.00 4.18
730 4379 3.000322 CACTATCAACTCAAACGCGGATC 60.000 47.826 12.47 0.00 0.00 3.36
731 4380 0.999406 ATCAACTCAAACGCGGATCG 59.001 50.000 12.47 0.00 45.38 3.69
732 4381 1.011968 TCAACTCAAACGCGGATCGG 61.012 55.000 12.47 0.00 43.86 4.18
733 4382 1.740296 AACTCAAACGCGGATCGGG 60.740 57.895 12.47 0.00 45.13 5.14
734 4383 2.162338 AACTCAAACGCGGATCGGGA 62.162 55.000 12.47 0.00 42.31 5.14
735 4384 2.125832 TCAAACGCGGATCGGGAC 60.126 61.111 12.47 0.00 42.31 4.46
736 4385 2.433491 CAAACGCGGATCGGGACA 60.433 61.111 12.47 0.00 42.31 4.02
737 4386 2.433664 AAACGCGGATCGGGACAC 60.434 61.111 12.47 0.00 42.31 3.67
738 4387 4.789075 AACGCGGATCGGGACACG 62.789 66.667 12.47 0.00 42.31 4.49
742 4391 3.822192 CGGATCGGGACACGCTGA 61.822 66.667 0.00 0.00 43.86 4.26
743 4392 2.815308 GGATCGGGACACGCTGAT 59.185 61.111 0.00 0.00 43.86 2.90
744 4393 1.300233 GGATCGGGACACGCTGATC 60.300 63.158 0.00 0.00 43.86 2.92
745 4394 1.300233 GATCGGGACACGCTGATCC 60.300 63.158 0.00 0.00 43.86 3.36
746 4395 2.016393 GATCGGGACACGCTGATCCA 62.016 60.000 0.00 0.00 43.86 3.41
747 4396 1.613317 ATCGGGACACGCTGATCCAA 61.613 55.000 0.00 0.00 43.86 3.53
748 4397 1.375396 CGGGACACGCTGATCCAAA 60.375 57.895 0.00 0.00 36.65 3.28
749 4398 1.635663 CGGGACACGCTGATCCAAAC 61.636 60.000 0.00 0.00 36.65 2.93
750 4399 1.635663 GGGACACGCTGATCCAAACG 61.636 60.000 0.00 0.00 36.65 3.60
751 4400 1.635663 GGACACGCTGATCCAAACGG 61.636 60.000 0.00 0.00 34.87 4.44
752 4401 0.669318 GACACGCTGATCCAAACGGA 60.669 55.000 0.00 0.00 36.85 4.69
753 4402 0.949105 ACACGCTGATCCAAACGGAC 60.949 55.000 0.00 0.00 34.62 4.79
754 4403 0.948623 CACGCTGATCCAAACGGACA 60.949 55.000 0.00 0.00 34.62 4.02
755 4404 0.250124 ACGCTGATCCAAACGGACAA 60.250 50.000 0.00 0.00 34.62 3.18
756 4405 0.871722 CGCTGATCCAAACGGACAAA 59.128 50.000 0.00 0.00 34.62 2.83
757 4406 1.265635 CGCTGATCCAAACGGACAAAA 59.734 47.619 0.00 0.00 34.62 2.44
758 4407 2.095263 CGCTGATCCAAACGGACAAAAT 60.095 45.455 0.00 0.00 34.62 1.82
759 4408 3.244976 GCTGATCCAAACGGACAAAATG 58.755 45.455 0.00 0.00 34.62 2.32
760 4409 3.836949 CTGATCCAAACGGACAAAATGG 58.163 45.455 0.00 0.00 34.62 3.16
761 4410 2.560542 TGATCCAAACGGACAAAATGGG 59.439 45.455 0.00 0.00 34.62 4.00
762 4411 0.676736 TCCAAACGGACAAAATGGGC 59.323 50.000 0.00 0.00 0.00 5.36
763 4412 0.665972 CCAAACGGACAAAATGGGCG 60.666 55.000 0.00 0.00 0.00 6.13
764 4413 0.031449 CAAACGGACAAAATGGGCGT 59.969 50.000 0.00 0.00 0.00 5.68
765 4414 0.747852 AAACGGACAAAATGGGCGTT 59.252 45.000 0.00 0.00 0.00 4.84
766 4415 0.031449 AACGGACAAAATGGGCGTTG 59.969 50.000 0.00 0.00 0.00 4.10
767 4416 1.080839 CGGACAAAATGGGCGTTGG 60.081 57.895 0.00 0.00 0.00 3.77
768 4417 1.519751 CGGACAAAATGGGCGTTGGA 61.520 55.000 0.00 0.00 0.00 3.53
769 4418 0.243636 GGACAAAATGGGCGTTGGAG 59.756 55.000 0.00 0.00 0.00 3.86
770 4419 0.958822 GACAAAATGGGCGTTGGAGT 59.041 50.000 0.00 0.00 0.00 3.85
771 4420 1.339929 GACAAAATGGGCGTTGGAGTT 59.660 47.619 0.00 0.00 0.00 3.01
772 4421 1.068434 ACAAAATGGGCGTTGGAGTTG 59.932 47.619 0.00 0.00 0.00 3.16
773 4422 0.033366 AAAATGGGCGTTGGAGTTGC 59.967 50.000 0.00 0.00 0.00 4.17
774 4423 0.827507 AAATGGGCGTTGGAGTTGCT 60.828 50.000 0.00 0.00 0.00 3.91
775 4424 1.244019 AATGGGCGTTGGAGTTGCTC 61.244 55.000 0.00 0.00 0.00 4.26
776 4425 2.032681 GGGCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
777 4426 1.295423 GGGCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
778 4427 0.321298 GGGCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
779 4428 1.079503 GGCGTTGGAGTTGCTCTAAG 58.920 55.000 0.00 0.00 31.92 2.18
780 4429 1.337823 GGCGTTGGAGTTGCTCTAAGA 60.338 52.381 0.00 0.00 31.92 2.10
781 4430 1.996191 GCGTTGGAGTTGCTCTAAGAG 59.004 52.381 0.00 0.00 31.92 2.85
782 4431 2.611518 CGTTGGAGTTGCTCTAAGAGG 58.388 52.381 0.00 0.00 31.92 3.69
783 4432 2.351455 GTTGGAGTTGCTCTAAGAGGC 58.649 52.381 0.00 0.00 31.92 4.70
784 4433 0.905357 TGGAGTTGCTCTAAGAGGCC 59.095 55.000 0.00 0.00 0.00 5.19
785 4434 0.179234 GGAGTTGCTCTAAGAGGCCC 59.821 60.000 0.00 0.00 0.00 5.80
786 4435 1.199615 GAGTTGCTCTAAGAGGCCCT 58.800 55.000 0.00 0.00 0.00 5.19
787 4436 1.138069 GAGTTGCTCTAAGAGGCCCTC 59.862 57.143 1.26 1.26 0.00 4.30
788 4437 1.199615 GTTGCTCTAAGAGGCCCTCT 58.800 55.000 7.68 7.68 43.37 3.69
789 4438 1.134551 GTTGCTCTAAGAGGCCCTCTG 60.135 57.143 15.55 2.46 40.28 3.35
790 4439 1.333636 TGCTCTAAGAGGCCCTCTGC 61.334 60.000 15.55 13.82 40.28 4.26
791 4440 1.048160 GCTCTAAGAGGCCCTCTGCT 61.048 60.000 15.55 1.47 40.28 4.24
792 4441 1.494960 CTCTAAGAGGCCCTCTGCTT 58.505 55.000 15.55 0.62 40.28 3.91
793 4442 1.836802 CTCTAAGAGGCCCTCTGCTTT 59.163 52.381 15.55 0.20 40.28 3.51
794 4443 2.238395 CTCTAAGAGGCCCTCTGCTTTT 59.762 50.000 15.55 0.00 40.28 2.27
795 4444 2.237392 TCTAAGAGGCCCTCTGCTTTTC 59.763 50.000 15.55 0.00 40.28 2.29
796 4445 1.071434 AAGAGGCCCTCTGCTTTTCT 58.929 50.000 15.55 0.00 40.28 2.52
797 4446 1.071434 AGAGGCCCTCTGCTTTTCTT 58.929 50.000 13.83 0.00 39.62 2.52
798 4447 1.426983 AGAGGCCCTCTGCTTTTCTTT 59.573 47.619 13.83 0.00 39.62 2.52
799 4448 2.158400 AGAGGCCCTCTGCTTTTCTTTT 60.158 45.455 13.83 0.00 39.62 2.27
800 4449 2.230025 GAGGCCCTCTGCTTTTCTTTTC 59.770 50.000 2.64 0.00 40.92 2.29
801 4450 2.158400 AGGCCCTCTGCTTTTCTTTTCT 60.158 45.455 0.00 0.00 40.92 2.52
802 4451 2.630098 GGCCCTCTGCTTTTCTTTTCTT 59.370 45.455 0.00 0.00 40.92 2.52
803 4452 3.070159 GGCCCTCTGCTTTTCTTTTCTTT 59.930 43.478 0.00 0.00 40.92 2.52
804 4453 4.443457 GGCCCTCTGCTTTTCTTTTCTTTT 60.443 41.667 0.00 0.00 40.92 2.27
805 4454 5.118990 GCCCTCTGCTTTTCTTTTCTTTTT 58.881 37.500 0.00 0.00 36.87 1.94
833 4482 4.826274 TTGAAACTGAGAGACCCTATGG 57.174 45.455 0.00 0.00 37.80 2.74
852 4501 3.341823 TGGTGCAAGCAACAACATTTTT 58.658 36.364 10.84 0.00 44.10 1.94
874 4523 1.447317 GCATATGGGCCAGGTTCACG 61.447 60.000 13.78 0.00 0.00 4.35
904 4553 1.564818 TGGGCCATTAACGGATGGTTA 59.435 47.619 0.00 1.98 46.74 2.85
905 4554 2.227194 GGGCCATTAACGGATGGTTAG 58.773 52.381 4.39 0.00 46.74 2.34
906 4555 2.422377 GGGCCATTAACGGATGGTTAGT 60.422 50.000 4.39 0.00 46.74 2.24
907 4556 2.876550 GGCCATTAACGGATGGTTAGTC 59.123 50.000 13.86 0.75 46.74 2.59
908 4557 2.876550 GCCATTAACGGATGGTTAGTCC 59.123 50.000 13.86 0.00 46.74 3.85
909 4558 3.433173 GCCATTAACGGATGGTTAGTCCT 60.433 47.826 13.86 0.00 46.74 3.85
910 4559 4.777463 CCATTAACGGATGGTTAGTCCTT 58.223 43.478 6.57 0.00 41.87 3.36
933 4582 4.704833 CACCGGTGTGGCCTGGAG 62.705 72.222 26.95 0.00 43.94 3.86
934 4583 4.954118 ACCGGTGTGGCCTGGAGA 62.954 66.667 6.12 0.00 43.94 3.71
1185 4834 4.093291 CCCGCTGAGAGCAAGCCT 62.093 66.667 0.00 0.00 42.58 4.58
1243 4892 1.966451 CGCCCAGCCTTTTCTTCGT 60.966 57.895 0.00 0.00 0.00 3.85
1248 4897 2.162681 CCAGCCTTTTCTTCGTGGAAT 58.837 47.619 0.00 0.00 0.00 3.01
1327 4993 4.111053 GCCGAGGGGAAGGGGAAC 62.111 72.222 0.00 0.00 34.06 3.62
1462 5170 3.057386 TCGTTCGCCACTATTCAGTTACA 60.057 43.478 0.00 0.00 30.46 2.41
1464 5172 4.243270 GTTCGCCACTATTCAGTTACAGT 58.757 43.478 0.00 0.00 30.46 3.55
1465 5173 5.404946 GTTCGCCACTATTCAGTTACAGTA 58.595 41.667 0.00 0.00 30.46 2.74
1498 5206 3.536917 TACGGATGGCCCAGCGAG 61.537 66.667 0.00 0.00 34.14 5.03
1513 5222 0.721718 GCGAGCCTGTGACATGTTAC 59.278 55.000 13.55 13.55 0.00 2.50
1682 5396 1.001020 ATGACGCTGCCATTTGGGA 60.001 52.632 0.00 0.00 40.01 4.37
1812 5527 5.672194 AGTTTGATGAGGTACCCATCCTATT 59.328 40.000 27.11 15.87 43.24 1.73
1814 5529 5.825593 TGATGAGGTACCCATCCTATTTC 57.174 43.478 27.11 11.36 43.24 2.17
1847 5562 7.413475 ACGTCTAGAATGATAATGTGCATTC 57.587 36.000 0.00 0.00 46.64 2.67
2025 5769 3.755965 TGATTGCGCGTTGAATAATGT 57.244 38.095 8.43 0.00 0.00 2.71
2046 5833 7.704789 ATGTCAACTTCTTTCTGCAAAATTC 57.295 32.000 0.00 0.00 0.00 2.17
2268 6272 1.463553 CCCAGGTCAACAAACCCTGC 61.464 60.000 0.00 0.00 43.61 4.85
2341 6345 0.321919 TGCCTCTGGTGCTGACATTC 60.322 55.000 0.00 0.00 0.00 2.67
2357 6361 6.514870 GCTGACATTCAACAAGGTTGATGTAA 60.515 38.462 12.09 10.43 33.32 2.41
2549 6841 1.689984 TTTGAGTTGCCATGCTGACA 58.310 45.000 0.00 0.00 0.00 3.58
2625 8590 5.262588 ACAAACAGGGTTTTCATCTGTTC 57.737 39.130 8.15 0.00 46.92 3.18
2674 8669 5.669164 AGTTTTTGTAACTTGGCCTTCAA 57.331 34.783 3.32 0.00 0.00 2.69
2795 8790 5.106157 CCCTTGTGTTGGATGAATTCTACAC 60.106 44.000 7.05 12.38 38.85 2.90
2799 8794 5.760743 TGTGTTGGATGAATTCTACACGAAA 59.239 36.000 7.05 0.00 40.05 3.46
2889 8884 4.142093 GCAAGTGCCAAAGAATACATGGAT 60.142 41.667 0.00 0.00 36.27 3.41
3123 9153 5.722172 ATTCCCTCTTCAGAAATGATGGA 57.278 39.130 0.00 0.00 0.00 3.41
3157 9187 0.335361 AGGAAGAAGAGGAGGCGGTA 59.665 55.000 0.00 0.00 0.00 4.02
3268 9309 0.679321 GTACTCCCTCCGTTCTCCGT 60.679 60.000 0.00 0.00 33.66 4.69
3283 9324 4.119442 TCTCCGTGTATTAGCTTTGGTC 57.881 45.455 0.00 0.00 0.00 4.02
3311 9352 7.547227 AGTCAAGCTTTGTAAACTTTGACAAT 58.453 30.769 20.02 7.72 35.57 2.71
3464 9506 6.161855 TCAGTCAAATCTAATATGCGGAGT 57.838 37.500 0.00 0.00 0.00 3.85
3481 9523 4.939439 GCGGAGTAAATAAAAACAGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
3486 9528 9.682465 GGAGTAAATAAAAACAGAGGGAGTATT 57.318 33.333 0.00 0.00 0.00 1.89
3573 9615 3.767711 TCTATCTATCACAGCCATCCGT 58.232 45.455 0.00 0.00 0.00 4.69
3654 11750 6.417503 TCCTCAAGGGATATACATAGGCTA 57.582 41.667 0.00 0.00 39.58 3.93
3655 11751 6.998112 TCCTCAAGGGATATACATAGGCTAT 58.002 40.000 0.00 0.00 39.58 2.97
3758 11855 1.168714 GCCGGCTTGAGATGACTTTT 58.831 50.000 22.15 0.00 0.00 2.27
3760 11857 2.096013 GCCGGCTTGAGATGACTTTTAC 59.904 50.000 22.15 0.00 0.00 2.01
3761 11858 3.334691 CCGGCTTGAGATGACTTTTACA 58.665 45.455 0.00 0.00 0.00 2.41
3763 11860 3.997021 CGGCTTGAGATGACTTTTACAGT 59.003 43.478 0.00 0.00 39.07 3.55
3764 11861 4.452455 CGGCTTGAGATGACTTTTACAGTT 59.548 41.667 0.00 0.00 35.01 3.16
3765 11862 5.615544 CGGCTTGAGATGACTTTTACAGTTG 60.616 44.000 0.00 0.00 35.01 3.16
3766 11863 5.239525 GGCTTGAGATGACTTTTACAGTTGT 59.760 40.000 0.00 0.00 35.01 3.32
3782 11879 5.869579 ACAGTTGTTGTTGATAGGATGAGT 58.130 37.500 0.00 0.00 36.31 3.41
3783 11880 5.702670 ACAGTTGTTGTTGATAGGATGAGTG 59.297 40.000 0.00 0.00 36.31 3.51
3784 11881 5.702670 CAGTTGTTGTTGATAGGATGAGTGT 59.297 40.000 0.00 0.00 0.00 3.55
3785 11882 6.873605 CAGTTGTTGTTGATAGGATGAGTGTA 59.126 38.462 0.00 0.00 0.00 2.90
3786 11883 7.550551 CAGTTGTTGTTGATAGGATGAGTGTAT 59.449 37.037 0.00 0.00 0.00 2.29
3844 11942 2.927028 TCACTCCATTCTGATGCCATG 58.073 47.619 0.00 0.00 31.67 3.66
3847 11945 3.066342 CACTCCATTCTGATGCCATGAAC 59.934 47.826 0.00 0.00 31.67 3.18
3856 11954 2.040145 TGATGCCATGAACCTGTCTTGA 59.960 45.455 0.00 0.00 34.09 3.02
3869 11968 3.735237 TGTCTTGACTCTTGACAGGTC 57.265 47.619 2.35 0.00 36.03 3.85
3924 12023 2.665603 GACCCTGTCAGGAGTGGC 59.334 66.667 21.23 1.67 37.67 5.01
3926 12025 4.767255 CCCTGTCAGGAGTGGCGC 62.767 72.222 21.23 0.00 37.67 6.53
3932 12031 3.123620 CAGGAGTGGCGCTTCTGC 61.124 66.667 22.60 11.44 43.34 4.26
3942 12041 1.916697 GCGCTTCTGCTTCCAGGTTC 61.917 60.000 0.00 0.00 39.61 3.62
3946 12045 3.412386 GCTTCTGCTTCCAGGTTCTTAA 58.588 45.455 0.00 0.00 39.61 1.85
3959 12058 5.183904 CCAGGTTCTTAAGGTGGAAATGAAG 59.816 44.000 1.85 0.00 0.00 3.02
3965 12064 2.664402 AGGTGGAAATGAAGTGCTGT 57.336 45.000 0.00 0.00 0.00 4.40
4072 12175 0.478072 TCAATCCCATTCCCATCCCG 59.522 55.000 0.00 0.00 0.00 5.14
4254 12558 2.029844 GAAAGAAGGCACGCGCTCT 61.030 57.895 5.73 0.00 38.60 4.09
4267 12571 2.058798 CGCGCTCTACTTTGAAACTGA 58.941 47.619 5.56 0.00 0.00 3.41
4349 12660 1.074775 TTTCCCGGATGTGCTGCTT 59.925 52.632 0.73 0.00 0.00 3.91
4374 12685 1.546029 CACTCTCCACCAACATCTCGA 59.454 52.381 0.00 0.00 0.00 4.04
4379 12690 3.452264 TCTCCACCAACATCTCGAATCAT 59.548 43.478 0.00 0.00 0.00 2.45
4388 12699 1.318576 TCTCGAATCATGCGCCTCTA 58.681 50.000 4.18 0.00 0.00 2.43
4391 12702 0.855349 CGAATCATGCGCCTCTACAC 59.145 55.000 4.18 0.00 0.00 2.90
4451 12762 4.320870 TCCGTTTTGAGTTATTCTGGACC 58.679 43.478 0.00 0.00 0.00 4.46
4453 12764 4.069304 CGTTTTGAGTTATTCTGGACCCA 58.931 43.478 0.00 0.00 0.00 4.51
4502 12813 0.884704 ATGCGTGGGTGTGTGAAGAC 60.885 55.000 0.00 0.00 0.00 3.01
4556 12867 4.688879 CAGTTACTTAGAAACACCGCATCA 59.311 41.667 0.00 0.00 0.00 3.07
4568 12879 2.042259 CGCATCAGCCCTTCAAGCA 61.042 57.895 0.00 0.00 37.52 3.91
4574 12885 2.761213 GCCCTTCAAGCATGGGGG 60.761 66.667 13.86 13.86 39.56 5.40
4589 12900 0.112412 GGGGGCAAAAGAAGACTGGA 59.888 55.000 0.00 0.00 0.00 3.86
4604 12915 8.519799 AGAAGACTGGAAACATTAAAGTTCAA 57.480 30.769 0.00 0.00 41.51 2.69
4622 12933 1.745087 CAATTGGCTGTGGCGAACTAT 59.255 47.619 0.00 0.00 38.86 2.12
4643 12954 2.571653 TGTCATCCTTAGGTTGGACAGG 59.428 50.000 14.61 0.00 36.30 4.00
4691 13002 1.127343 GGGAGAGATGGTTGAGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
4712 13023 0.970937 CCCTCAAGCACTCGGTCCTA 60.971 60.000 0.00 0.00 0.00 2.94
4735 13046 2.826777 CTTGCCTCCCTCCAACGCAT 62.827 60.000 0.00 0.00 0.00 4.73
4751 13062 1.906966 CGCATCATTGAAAGACAACGC 59.093 47.619 0.00 0.00 41.52 4.84
4847 13166 8.601546 AGGTCTAAGAATTTCATCCCTCATATC 58.398 37.037 0.00 0.00 0.00 1.63
4849 13168 9.784531 GTCTAAGAATTTCATCCCTCATATCAA 57.215 33.333 0.00 0.00 0.00 2.57
4872 13192 3.181418 ACACAATGGGGAGTTGATTTCCT 60.181 43.478 0.00 0.00 35.01 3.36
4947 13267 0.398696 TGCCGTTGCTAGGGAAGAAA 59.601 50.000 11.18 0.00 38.71 2.52
5002 13322 1.335415 CGATCTCGCGGATCTTGATGT 60.335 52.381 25.02 0.94 46.33 3.06
5084 13404 2.481471 GCCTGATGGGTTTAGCGCC 61.481 63.158 2.29 0.00 37.43 6.53
5114 13434 4.751767 TCAAAAAGCTTGGTCCACAATT 57.248 36.364 0.00 0.00 38.65 2.32
5126 13446 3.122445 GGTCCACAATTAAGAACGACGTC 59.878 47.826 5.18 5.18 0.00 4.34
5160 13480 4.721776 TCCTAAAGCTCTATGTGGGTGATT 59.278 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 3630 3.620488 GCCATCAACATTAACCTCTGGA 58.380 45.455 0.00 0.00 0.00 3.86
33 3639 2.512692 AGTGCTGGCCATCAACATTA 57.487 45.000 11.63 0.00 0.00 1.90
95 3712 2.708216 TGTCTTGTCAAAGGCAGTCA 57.292 45.000 0.00 0.00 43.06 3.41
100 3717 1.546029 GGGGATTGTCTTGTCAAAGGC 59.454 52.381 0.00 0.00 38.58 4.35
102 3719 4.768968 AGATTGGGGATTGTCTTGTCAAAG 59.231 41.667 0.00 0.00 34.45 2.77
103 3720 4.523943 CAGATTGGGGATTGTCTTGTCAAA 59.476 41.667 0.00 0.00 0.00 2.69
107 3724 4.598036 ATCAGATTGGGGATTGTCTTGT 57.402 40.909 0.00 0.00 0.00 3.16
125 3742 5.122707 TCTCTGCCTCTTCTCTTCTATCA 57.877 43.478 0.00 0.00 0.00 2.15
179 3796 0.949105 ACCGAAATCACGCTCCACAC 60.949 55.000 0.00 0.00 0.00 3.82
191 3808 4.566004 TCGAGATTGAAGAACACCGAAAT 58.434 39.130 0.00 0.00 0.00 2.17
232 3849 1.276421 GGTGCTCCAAGTTCTAGCAGA 59.724 52.381 8.57 0.00 46.26 4.26
292 3909 7.093333 ACACTCATCCTCTACAATCATGTTGTA 60.093 37.037 15.45 15.45 41.05 2.41
303 3920 3.739401 TCCTCACACTCATCCTCTACA 57.261 47.619 0.00 0.00 0.00 2.74
334 3953 4.907269 ACCTTGAAATTGAAACCCCTGAAT 59.093 37.500 0.00 0.00 0.00 2.57
335 3954 4.100808 CACCTTGAAATTGAAACCCCTGAA 59.899 41.667 0.00 0.00 0.00 3.02
354 3973 2.884639 CTCGGGAACAACATTTTCACCT 59.115 45.455 0.00 0.00 0.00 4.00
381 4000 4.103103 GCAAACCTTCCCGCTCGC 62.103 66.667 0.00 0.00 0.00 5.03
389 4008 2.682856 TCAGTGAACTGTGCAAACCTTC 59.317 45.455 10.14 0.00 44.12 3.46
392 4011 3.715628 ATTCAGTGAACTGTGCAAACC 57.284 42.857 7.96 0.00 44.12 3.27
420 4039 7.819644 TGTGACTTTCTCAATCACATATTTGG 58.180 34.615 2.28 0.00 45.89 3.28
467 4096 2.344592 TGGTTACCAAGGTGAGTCCAT 58.655 47.619 0.00 0.00 39.02 3.41
614 4259 1.686052 TCAAAAGAATTGCCCAGCGTT 59.314 42.857 0.00 0.00 0.00 4.84
616 4261 1.000385 TGTCAAAAGAATTGCCCAGCG 60.000 47.619 0.00 0.00 0.00 5.18
618 4263 4.261578 ACATGTCAAAAGAATTGCCCAG 57.738 40.909 0.00 0.00 0.00 4.45
628 4277 8.830580 TCTTCTCTTTTCTGTACATGTCAAAAG 58.169 33.333 17.82 17.82 36.02 2.27
630 4279 8.731275 TTCTTCTCTTTTCTGTACATGTCAAA 57.269 30.769 0.00 0.00 0.00 2.69
659 4308 1.523711 CGTCTGGTATGCGGCCATT 60.524 57.895 2.24 0.00 35.19 3.16
660 4309 2.108976 CGTCTGGTATGCGGCCAT 59.891 61.111 2.24 0.00 35.19 4.40
661 4310 4.830765 GCGTCTGGTATGCGGCCA 62.831 66.667 2.24 0.00 34.42 5.36
662 4311 4.530857 AGCGTCTGGTATGCGGCC 62.531 66.667 0.00 0.00 45.38 6.13
665 4314 1.939785 GTCGAGCGTCTGGTATGCG 60.940 63.158 0.00 0.00 45.38 4.73
666 4315 1.939785 CGTCGAGCGTCTGGTATGC 60.940 63.158 0.00 0.00 40.71 3.14
667 4316 0.098200 TTCGTCGAGCGTCTGGTATG 59.902 55.000 0.00 0.00 42.13 2.39
668 4317 0.806868 TTTCGTCGAGCGTCTGGTAT 59.193 50.000 0.00 0.00 42.13 2.73
669 4318 0.592637 TTTTCGTCGAGCGTCTGGTA 59.407 50.000 0.00 0.00 42.13 3.25
670 4319 0.038526 ATTTTCGTCGAGCGTCTGGT 60.039 50.000 0.00 0.00 42.13 4.00
671 4320 0.366871 CATTTTCGTCGAGCGTCTGG 59.633 55.000 0.00 0.00 42.13 3.86
673 4322 1.060713 CACATTTTCGTCGAGCGTCT 58.939 50.000 0.00 0.00 42.13 4.18
674 4323 0.782384 ACACATTTTCGTCGAGCGTC 59.218 50.000 0.00 0.00 42.13 5.19
675 4324 0.782384 GACACATTTTCGTCGAGCGT 59.218 50.000 0.00 0.00 42.13 5.07
676 4325 0.093026 GGACACATTTTCGTCGAGCG 59.907 55.000 0.00 0.00 43.01 5.03
677 4326 0.093026 CGGACACATTTTCGTCGAGC 59.907 55.000 0.00 0.00 32.74 5.03
678 4327 0.093026 GCGGACACATTTTCGTCGAG 59.907 55.000 0.00 0.00 32.74 4.04
679 4328 0.597898 TGCGGACACATTTTCGTCGA 60.598 50.000 0.00 0.00 32.74 4.20
680 4329 0.442310 ATGCGGACACATTTTCGTCG 59.558 50.000 0.00 0.00 32.74 5.12
681 4330 1.196808 ACATGCGGACACATTTTCGTC 59.803 47.619 0.00 0.00 0.00 4.20
682 4331 1.234821 ACATGCGGACACATTTTCGT 58.765 45.000 0.00 0.00 0.00 3.85
683 4332 1.978097 CAACATGCGGACACATTTTCG 59.022 47.619 0.00 0.00 0.00 3.46
684 4333 2.288152 ACCAACATGCGGACACATTTTC 60.288 45.455 8.71 0.00 0.00 2.29
685 4334 1.686052 ACCAACATGCGGACACATTTT 59.314 42.857 8.71 0.00 0.00 1.82
686 4335 1.269448 GACCAACATGCGGACACATTT 59.731 47.619 8.71 0.00 0.00 2.32
687 4336 0.881118 GACCAACATGCGGACACATT 59.119 50.000 8.71 0.00 0.00 2.71
688 4337 1.298157 CGACCAACATGCGGACACAT 61.298 55.000 8.71 0.00 0.00 3.21
689 4338 1.958715 CGACCAACATGCGGACACA 60.959 57.895 8.71 0.00 0.00 3.72
690 4339 2.860293 CGACCAACATGCGGACAC 59.140 61.111 8.71 0.10 0.00 3.67
691 4340 3.047280 GCGACCAACATGCGGACA 61.047 61.111 8.71 0.00 0.00 4.02
692 4341 3.047280 TGCGACCAACATGCGGAC 61.047 61.111 8.71 1.82 0.00 4.79
693 4342 2.161078 TAGTGCGACCAACATGCGGA 62.161 55.000 8.71 0.00 0.00 5.54
694 4343 1.089481 ATAGTGCGACCAACATGCGG 61.089 55.000 0.00 0.00 0.00 5.69
695 4344 0.301687 GATAGTGCGACCAACATGCG 59.698 55.000 0.00 0.00 0.00 4.73
696 4345 1.368641 TGATAGTGCGACCAACATGC 58.631 50.000 0.00 0.00 0.00 4.06
697 4346 3.002791 AGTTGATAGTGCGACCAACATG 58.997 45.455 0.00 0.00 40.77 3.21
698 4347 3.262420 GAGTTGATAGTGCGACCAACAT 58.738 45.455 0.00 0.00 40.77 2.71
699 4348 2.036604 TGAGTTGATAGTGCGACCAACA 59.963 45.455 0.00 0.00 40.77 3.33
700 4349 2.683968 TGAGTTGATAGTGCGACCAAC 58.316 47.619 0.00 0.00 39.17 3.77
701 4350 3.394674 TTGAGTTGATAGTGCGACCAA 57.605 42.857 0.00 0.00 0.00 3.67
702 4351 3.064207 GTTTGAGTTGATAGTGCGACCA 58.936 45.455 0.00 0.00 0.00 4.02
703 4352 2.092211 CGTTTGAGTTGATAGTGCGACC 59.908 50.000 0.00 0.00 0.00 4.79
704 4353 2.472397 GCGTTTGAGTTGATAGTGCGAC 60.472 50.000 0.00 0.00 0.00 5.19
705 4354 1.724623 GCGTTTGAGTTGATAGTGCGA 59.275 47.619 0.00 0.00 0.00 5.10
706 4355 1.524986 CGCGTTTGAGTTGATAGTGCG 60.525 52.381 0.00 0.00 36.96 5.34
707 4356 1.201921 CCGCGTTTGAGTTGATAGTGC 60.202 52.381 4.92 0.00 0.00 4.40
708 4357 2.333926 TCCGCGTTTGAGTTGATAGTG 58.666 47.619 4.92 0.00 0.00 2.74
709 4358 2.736144 TCCGCGTTTGAGTTGATAGT 57.264 45.000 4.92 0.00 0.00 2.12
710 4359 2.216488 CGATCCGCGTTTGAGTTGATAG 59.784 50.000 4.92 0.00 34.64 2.08
711 4360 2.190161 CGATCCGCGTTTGAGTTGATA 58.810 47.619 4.92 0.00 34.64 2.15
712 4361 0.999406 CGATCCGCGTTTGAGTTGAT 59.001 50.000 4.92 0.00 34.64 2.57
713 4362 1.011968 CCGATCCGCGTTTGAGTTGA 61.012 55.000 4.92 0.00 38.67 3.18
714 4363 1.419922 CCGATCCGCGTTTGAGTTG 59.580 57.895 4.92 0.00 38.67 3.16
715 4364 1.740296 CCCGATCCGCGTTTGAGTT 60.740 57.895 4.92 0.00 38.67 3.01
716 4365 2.125673 CCCGATCCGCGTTTGAGT 60.126 61.111 4.92 0.00 38.67 3.41
717 4366 2.165301 GTCCCGATCCGCGTTTGAG 61.165 63.158 4.92 0.00 38.67 3.02
718 4367 2.125832 GTCCCGATCCGCGTTTGA 60.126 61.111 4.92 0.00 38.67 2.69
719 4368 2.433491 TGTCCCGATCCGCGTTTG 60.433 61.111 4.92 0.00 38.67 2.93
720 4369 2.433664 GTGTCCCGATCCGCGTTT 60.434 61.111 4.92 0.00 38.67 3.60
721 4370 4.789075 CGTGTCCCGATCCGCGTT 62.789 66.667 4.92 0.00 39.56 4.84
725 4374 3.138930 ATCAGCGTGTCCCGATCCG 62.139 63.158 0.00 0.00 39.56 4.18
726 4375 1.300233 GATCAGCGTGTCCCGATCC 60.300 63.158 0.00 0.00 39.56 3.36
727 4376 1.300233 GGATCAGCGTGTCCCGATC 60.300 63.158 0.00 0.00 39.56 3.69
728 4377 1.613317 TTGGATCAGCGTGTCCCGAT 61.613 55.000 0.00 0.00 39.56 4.18
729 4378 1.822114 TTTGGATCAGCGTGTCCCGA 61.822 55.000 0.00 0.00 39.56 5.14
730 4379 1.375396 TTTGGATCAGCGTGTCCCG 60.375 57.895 0.00 0.00 40.40 5.14
731 4380 1.635663 CGTTTGGATCAGCGTGTCCC 61.636 60.000 0.00 0.00 33.45 4.46
732 4381 1.635663 CCGTTTGGATCAGCGTGTCC 61.636 60.000 0.00 0.00 37.49 4.02
733 4382 0.669318 TCCGTTTGGATCAGCGTGTC 60.669 55.000 0.00 0.00 40.17 3.67
734 4383 1.369692 TCCGTTTGGATCAGCGTGT 59.630 52.632 0.00 0.00 40.17 4.49
735 4384 4.277239 TCCGTTTGGATCAGCGTG 57.723 55.556 0.00 0.00 40.17 5.34
743 4392 0.676736 GCCCATTTTGTCCGTTTGGA 59.323 50.000 0.00 0.00 43.88 3.53
744 4393 0.665972 CGCCCATTTTGTCCGTTTGG 60.666 55.000 0.00 0.00 0.00 3.28
745 4394 0.031449 ACGCCCATTTTGTCCGTTTG 59.969 50.000 0.00 0.00 0.00 2.93
746 4395 0.747852 AACGCCCATTTTGTCCGTTT 59.252 45.000 0.00 0.00 38.79 3.60
747 4396 0.031449 CAACGCCCATTTTGTCCGTT 59.969 50.000 0.00 0.00 42.09 4.44
748 4397 1.657556 CAACGCCCATTTTGTCCGT 59.342 52.632 0.00 0.00 0.00 4.69
749 4398 1.080839 CCAACGCCCATTTTGTCCG 60.081 57.895 0.00 0.00 0.00 4.79
750 4399 0.243636 CTCCAACGCCCATTTTGTCC 59.756 55.000 0.00 0.00 0.00 4.02
751 4400 0.958822 ACTCCAACGCCCATTTTGTC 59.041 50.000 0.00 0.00 0.00 3.18
752 4401 1.068434 CAACTCCAACGCCCATTTTGT 59.932 47.619 0.00 0.00 0.00 2.83
753 4402 1.782044 CAACTCCAACGCCCATTTTG 58.218 50.000 0.00 0.00 0.00 2.44
754 4403 0.033366 GCAACTCCAACGCCCATTTT 59.967 50.000 0.00 0.00 0.00 1.82
755 4404 0.827507 AGCAACTCCAACGCCCATTT 60.828 50.000 0.00 0.00 0.00 2.32
756 4405 1.228552 AGCAACTCCAACGCCCATT 60.229 52.632 0.00 0.00 0.00 3.16
757 4406 1.675641 GAGCAACTCCAACGCCCAT 60.676 57.895 0.00 0.00 0.00 4.00
758 4407 1.476845 TAGAGCAACTCCAACGCCCA 61.477 55.000 0.00 0.00 0.00 5.36
759 4408 0.321298 TTAGAGCAACTCCAACGCCC 60.321 55.000 0.00 0.00 0.00 6.13
760 4409 1.079503 CTTAGAGCAACTCCAACGCC 58.920 55.000 0.00 0.00 0.00 5.68
761 4410 1.996191 CTCTTAGAGCAACTCCAACGC 59.004 52.381 0.00 0.00 0.00 4.84
762 4411 2.611518 CCTCTTAGAGCAACTCCAACG 58.388 52.381 3.26 0.00 0.00 4.10
763 4412 2.351455 GCCTCTTAGAGCAACTCCAAC 58.649 52.381 3.26 0.00 0.00 3.77
764 4413 1.279271 GGCCTCTTAGAGCAACTCCAA 59.721 52.381 3.26 0.00 0.00 3.53
765 4414 0.905357 GGCCTCTTAGAGCAACTCCA 59.095 55.000 3.26 0.00 0.00 3.86
766 4415 0.179234 GGGCCTCTTAGAGCAACTCC 59.821 60.000 0.84 0.00 0.00 3.85
767 4416 1.138069 GAGGGCCTCTTAGAGCAACTC 59.862 57.143 26.44 6.63 0.00 3.01
768 4417 1.199615 GAGGGCCTCTTAGAGCAACT 58.800 55.000 26.44 0.81 0.00 3.16
769 4418 1.134551 CAGAGGGCCTCTTAGAGCAAC 60.135 57.143 33.30 3.07 38.99 4.17
770 4419 1.198713 CAGAGGGCCTCTTAGAGCAA 58.801 55.000 33.30 0.00 38.99 3.91
771 4420 1.333636 GCAGAGGGCCTCTTAGAGCA 61.334 60.000 33.30 0.00 38.99 4.26
772 4421 1.048160 AGCAGAGGGCCTCTTAGAGC 61.048 60.000 33.30 29.95 46.50 4.09
773 4422 1.494960 AAGCAGAGGGCCTCTTAGAG 58.505 55.000 33.30 22.20 46.50 2.43
774 4423 1.958288 AAAGCAGAGGGCCTCTTAGA 58.042 50.000 33.30 0.00 46.50 2.10
775 4424 2.238395 AGAAAAGCAGAGGGCCTCTTAG 59.762 50.000 33.30 23.30 46.50 2.18
776 4425 2.269940 AGAAAAGCAGAGGGCCTCTTA 58.730 47.619 33.30 0.00 46.50 2.10
777 4426 1.071434 AGAAAAGCAGAGGGCCTCTT 58.929 50.000 33.30 18.96 46.50 2.85
778 4427 1.071434 AAGAAAAGCAGAGGGCCTCT 58.929 50.000 30.46 30.46 46.50 3.69
779 4428 1.916506 AAAGAAAAGCAGAGGGCCTC 58.083 50.000 26.42 26.42 46.50 4.70
780 4429 2.158400 AGAAAAGAAAAGCAGAGGGCCT 60.158 45.455 5.25 5.25 46.50 5.19
781 4430 2.242926 AGAAAAGAAAAGCAGAGGGCC 58.757 47.619 0.00 0.00 46.50 5.80
782 4431 4.327982 AAAGAAAAGAAAAGCAGAGGGC 57.672 40.909 0.00 0.00 45.30 5.19
809 4458 6.003950 CCATAGGGTCTCTCAGTTTCAAAAA 58.996 40.000 0.00 0.00 0.00 1.94
810 4459 5.560724 CCATAGGGTCTCTCAGTTTCAAAA 58.439 41.667 0.00 0.00 0.00 2.44
811 4460 5.165961 CCATAGGGTCTCTCAGTTTCAAA 57.834 43.478 0.00 0.00 0.00 2.69
812 4461 4.826274 CCATAGGGTCTCTCAGTTTCAA 57.174 45.455 0.00 0.00 0.00 2.69
826 4475 1.067635 GTTGTTGCTTGCACCATAGGG 60.068 52.381 0.00 0.00 41.29 3.53
827 4476 1.612950 TGTTGTTGCTTGCACCATAGG 59.387 47.619 0.00 0.00 0.00 2.57
828 4477 3.581024 ATGTTGTTGCTTGCACCATAG 57.419 42.857 0.00 0.00 0.00 2.23
829 4478 4.333913 AAATGTTGTTGCTTGCACCATA 57.666 36.364 0.00 0.00 0.00 2.74
830 4479 2.914695 AATGTTGTTGCTTGCACCAT 57.085 40.000 0.00 0.00 0.00 3.55
831 4480 2.687700 AAATGTTGTTGCTTGCACCA 57.312 40.000 0.00 0.00 0.00 4.17
832 4481 3.373439 TCAAAAATGTTGTTGCTTGCACC 59.627 39.130 0.00 0.00 0.00 5.01
833 4482 4.580528 CTCAAAAATGTTGTTGCTTGCAC 58.419 39.130 0.00 0.00 0.00 4.57
834 4483 3.063725 GCTCAAAAATGTTGTTGCTTGCA 59.936 39.130 0.00 0.00 0.00 4.08
852 4501 0.183492 GAACCTGGCCCATATGCTCA 59.817 55.000 0.00 0.00 0.00 4.26
892 4541 4.637483 CGTAAGGACTAACCATCCGTTA 57.363 45.455 0.00 0.00 41.52 3.18
893 4542 3.515330 CGTAAGGACTAACCATCCGTT 57.485 47.619 0.00 0.00 41.52 4.44
908 4557 1.373748 CCACACCGGTGTCCGTAAG 60.374 63.158 36.92 23.53 46.80 2.34
909 4558 2.735883 CCACACCGGTGTCCGTAA 59.264 61.111 36.92 0.00 46.80 3.18
910 4559 3.993584 GCCACACCGGTGTCCGTA 61.994 66.667 36.92 0.00 46.80 4.02
916 4565 4.704833 CTCCAGGCCACACCGGTG 62.705 72.222 32.83 32.83 46.52 4.94
928 4577 2.279069 ACCGCACTCCAGTCTCCAG 61.279 63.158 0.00 0.00 0.00 3.86
929 4578 2.203640 ACCGCACTCCAGTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
930 4579 2.262915 CACCGCACTCCAGTCTCC 59.737 66.667 0.00 0.00 0.00 3.71
931 4580 2.433318 GCACCGCACTCCAGTCTC 60.433 66.667 0.00 0.00 0.00 3.36
932 4581 4.363990 CGCACCGCACTCCAGTCT 62.364 66.667 0.00 0.00 0.00 3.24
1173 4822 0.252239 TCTGGGTAGGCTTGCTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
1185 4834 0.106167 CCTCGAGGTCCATCTGGGTA 60.106 60.000 24.04 0.00 38.11 3.69
1231 4880 3.575630 GGAAATTCCACGAAGAAAAGGC 58.424 45.455 7.23 0.00 36.28 4.35
1464 5172 7.255242 GCCATCCGTACTACTGTAATTGTAGTA 60.255 40.741 9.21 9.21 45.86 1.82
1481 5189 3.536917 CTCGCTGGGCCATCCGTA 61.537 66.667 21.22 10.80 38.76 4.02
1498 5206 3.857010 GCAAAAGGTAACATGTCACAGGC 60.857 47.826 0.59 0.00 41.41 4.85
1513 5222 3.828451 TCCCAAATTCTCTCAGCAAAAGG 59.172 43.478 0.00 0.00 0.00 3.11
1682 5396 2.210116 GTCGCGGATATCAATGTTGGT 58.790 47.619 6.13 0.00 0.00 3.67
1835 5550 9.182214 ACAGAGTATTTCAAGAATGCACATTAT 57.818 29.630 0.00 0.00 0.00 1.28
1878 5595 3.187022 CGCATGAAACAGTTCAGTCATCA 59.813 43.478 0.00 0.00 46.75 3.07
2025 5769 7.322664 ACAAGAATTTTGCAGAAAGAAGTTGA 58.677 30.769 0.00 0.00 0.00 3.18
2268 6272 5.957798 ACATCATGTTGCTCATAAAGGTTG 58.042 37.500 3.61 0.00 34.67 3.77
2549 6841 9.768662 ATTATTCGATAAACCTAAACCATACGT 57.231 29.630 0.00 0.00 0.00 3.57
2624 8589 2.849294 TGAAACATCATGGACACGGA 57.151 45.000 0.00 0.00 0.00 4.69
2625 8590 3.691118 AGAATGAAACATCATGGACACGG 59.309 43.478 0.00 0.00 0.00 4.94
2685 8680 1.059098 AGTCTTGCATCCACTGGTCA 58.941 50.000 0.00 0.00 0.00 4.02
2795 8790 1.986378 CTCCAACAGAGCGTAGTTTCG 59.014 52.381 0.00 0.00 35.31 3.46
3123 9153 0.611062 TTCCTCCTCGTCCACATCGT 60.611 55.000 0.00 0.00 0.00 3.73
3157 9187 4.836825 TCTCGCAAAATCTGAAATCCTCT 58.163 39.130 0.00 0.00 0.00 3.69
3418 9459 8.006298 TGAAGTCAAACTTGGTATTGATTTGT 57.994 30.769 0.00 0.00 38.80 2.83
3419 9460 8.137437 ACTGAAGTCAAACTTGGTATTGATTTG 58.863 33.333 0.00 0.00 38.80 2.32
3420 9461 8.237811 ACTGAAGTCAAACTTGGTATTGATTT 57.762 30.769 0.00 0.00 38.80 2.17
3421 9462 7.823745 ACTGAAGTCAAACTTGGTATTGATT 57.176 32.000 0.00 0.00 38.80 2.57
3422 9463 7.440523 GACTGAAGTCAAACTTGGTATTGAT 57.559 36.000 5.58 0.00 44.18 2.57
3459 9501 6.171213 ACTCCCTCTGTTTTTATTTACTCCG 58.829 40.000 0.00 0.00 0.00 4.63
3549 9591 5.592282 ACGGATGGCTGTGATAGATAGATAG 59.408 44.000 0.00 0.00 30.79 2.08
3550 9592 5.510430 ACGGATGGCTGTGATAGATAGATA 58.490 41.667 0.00 0.00 30.79 1.98
3551 9593 4.348486 ACGGATGGCTGTGATAGATAGAT 58.652 43.478 0.00 0.00 30.79 1.98
3552 9594 3.767711 ACGGATGGCTGTGATAGATAGA 58.232 45.455 0.00 0.00 30.79 1.98
3596 11685 8.359642 CGAACCCCATTAATTCATGATTATGTT 58.640 33.333 0.00 0.00 35.73 2.71
3691 11788 8.770828 AGATTTCAGATTTGCAAAATGAAACTG 58.229 29.630 34.59 25.54 38.90 3.16
3758 11855 6.873605 CACTCATCCTATCAACAACAACTGTA 59.126 38.462 0.00 0.00 37.23 2.74
3760 11857 5.702670 ACACTCATCCTATCAACAACAACTG 59.297 40.000 0.00 0.00 0.00 3.16
3761 11858 5.869579 ACACTCATCCTATCAACAACAACT 58.130 37.500 0.00 0.00 0.00 3.16
3763 11860 7.549134 GTCATACACTCATCCTATCAACAACAA 59.451 37.037 0.00 0.00 0.00 2.83
3764 11861 7.041721 GTCATACACTCATCCTATCAACAACA 58.958 38.462 0.00 0.00 0.00 3.33
3765 11862 7.223582 CAGTCATACACTCATCCTATCAACAAC 59.776 40.741 0.00 0.00 30.26 3.32
3766 11863 7.093333 ACAGTCATACACTCATCCTATCAACAA 60.093 37.037 0.00 0.00 30.26 2.83
3782 11879 9.685276 ATTCATAGGAAAATCAACAGTCATACA 57.315 29.630 0.00 0.00 36.43 2.29
3783 11880 9.941664 CATTCATAGGAAAATCAACAGTCATAC 57.058 33.333 0.00 0.00 36.43 2.39
3784 11881 9.123902 CCATTCATAGGAAAATCAACAGTCATA 57.876 33.333 0.00 0.00 36.43 2.15
3785 11882 7.835682 TCCATTCATAGGAAAATCAACAGTCAT 59.164 33.333 0.00 0.00 36.43 3.06
3786 11883 7.174413 TCCATTCATAGGAAAATCAACAGTCA 58.826 34.615 0.00 0.00 36.43 3.41
3844 11942 4.060038 TGTCAAGAGTCAAGACAGGTTC 57.940 45.455 12.10 0.00 37.36 3.62
3856 11954 1.924731 TCCATCGACCTGTCAAGAGT 58.075 50.000 0.00 0.00 0.00 3.24
3926 12025 4.006319 CCTTAAGAACCTGGAAGCAGAAG 58.994 47.826 3.36 0.00 0.00 2.85
3932 12031 4.367039 TTCCACCTTAAGAACCTGGAAG 57.633 45.455 3.36 0.00 36.33 3.46
3942 12041 4.520492 ACAGCACTTCATTTCCACCTTAAG 59.480 41.667 0.00 0.00 0.00 1.85
3946 12045 2.664402 ACAGCACTTCATTTCCACCT 57.336 45.000 0.00 0.00 0.00 4.00
3959 12058 3.775202 ACAGAGTGATATCGAACAGCAC 58.225 45.455 9.94 9.94 0.00 4.40
3965 12064 3.250280 GCGACCTACAGAGTGATATCGAA 59.750 47.826 0.00 0.00 0.00 3.71
4072 12175 5.495412 CGCGAAAACAATTCAATTCATCGAC 60.495 40.000 0.00 0.80 0.00 4.20
4080 12183 5.410439 ACCTAGTACGCGAAAACAATTCAAT 59.590 36.000 15.93 0.00 0.00 2.57
4081 12184 4.751098 ACCTAGTACGCGAAAACAATTCAA 59.249 37.500 15.93 0.00 0.00 2.69
4208 12512 0.669318 AATCAATGGCGTCACGTCGT 60.669 50.000 0.00 0.00 32.50 4.34
4279 12584 2.249535 CGGGCAGGCATTCAGATCG 61.250 63.158 0.00 0.00 0.00 3.69
4327 12638 1.303317 AGCACATCCGGGAAACACC 60.303 57.895 0.00 0.00 38.08 4.16
4328 12639 1.875963 CAGCACATCCGGGAAACAC 59.124 57.895 0.00 0.00 0.00 3.32
4329 12640 1.971167 GCAGCACATCCGGGAAACA 60.971 57.895 0.00 0.00 0.00 2.83
4349 12660 0.836606 TGTTGGTGGAGAGTGCTTGA 59.163 50.000 0.00 0.00 0.00 3.02
4355 12666 1.924731 TCGAGATGTTGGTGGAGAGT 58.075 50.000 0.00 0.00 0.00 3.24
4374 12685 0.833287 AGGTGTAGAGGCGCATGATT 59.167 50.000 10.83 0.00 0.00 2.57
4379 12690 1.295423 GGAAAGGTGTAGAGGCGCA 59.705 57.895 10.83 0.00 0.00 6.09
4388 12699 1.228154 GGCCGAAGTGGAAAGGTGT 60.228 57.895 0.00 0.00 42.00 4.16
4391 12702 2.361230 GGGGCCGAAGTGGAAAGG 60.361 66.667 0.00 0.00 42.00 3.11
4424 12735 5.334879 CCAGAATAACTCAAAACGGAACCTG 60.335 44.000 0.00 0.00 0.00 4.00
4451 12762 1.030457 GCTCAAATCCATCCAGCTGG 58.970 55.000 27.87 27.87 37.66 4.85
4453 12764 1.409802 CCTGCTCAAATCCATCCAGCT 60.410 52.381 0.00 0.00 0.00 4.24
4502 12813 6.512415 GCCTCTTGAAAGGATCAACAATATCG 60.512 42.308 0.00 0.00 43.08 2.92
4556 12867 2.361771 CCCCATGCTTGAAGGGCT 59.638 61.111 0.22 0.00 41.42 5.19
4568 12879 1.550869 CCAGTCTTCTTTTGCCCCCAT 60.551 52.381 0.00 0.00 0.00 4.00
4574 12885 7.706607 ACTTTAATGTTTCCAGTCTTCTTTTGC 59.293 33.333 0.00 0.00 0.00 3.68
4589 12900 6.482973 CCACAGCCAATTGAACTTTAATGTTT 59.517 34.615 7.12 0.00 0.00 2.83
4604 12915 1.340017 ACATAGTTCGCCACAGCCAAT 60.340 47.619 0.00 0.00 34.57 3.16
4622 12933 2.571653 CCTGTCCAACCTAAGGATGACA 59.428 50.000 0.00 0.00 37.52 3.58
4691 13002 1.079750 GACCGAGTGCTTGAGGGAC 60.080 63.158 0.00 0.00 36.48 4.46
4735 13046 4.923871 GTCTAGAGCGTTGTCTTTCAATGA 59.076 41.667 0.00 0.00 43.50 2.57
4751 13062 4.002982 CTCGGATCCATCTCAGTCTAGAG 58.997 52.174 13.41 1.56 36.97 2.43
4815 13134 6.126623 GGGATGAAATTCTTAGACCTCCTTCT 60.127 42.308 0.00 0.00 0.00 2.85
4847 13166 4.605640 AATCAACTCCCCATTGTGTTTG 57.394 40.909 0.00 0.00 0.00 2.93
4849 13168 3.578282 GGAAATCAACTCCCCATTGTGTT 59.422 43.478 0.00 0.00 0.00 3.32
4872 13192 3.791320 TCTCCTCCTTCCTTTCTTGCTA 58.209 45.455 0.00 0.00 0.00 3.49
4947 13267 5.044919 TGTCAAGGAAGTCCATATCCACATT 60.045 40.000 0.00 0.00 38.23 2.71
5002 13322 3.450096 CACCTCATCCTCTGTGAAGATCA 59.550 47.826 0.00 0.00 0.00 2.92
5069 13389 2.813226 AAGCGGCGCTAAACCCATCA 62.813 55.000 36.59 0.00 38.25 3.07
5106 13426 3.979948 TGACGTCGTTCTTAATTGTGGA 58.020 40.909 11.62 0.00 0.00 4.02
5114 13434 0.457166 CCGCCATGACGTCGTTCTTA 60.457 55.000 7.76 0.00 0.00 2.10
5126 13446 2.397751 CTTTAGGAGCACCGCCATG 58.602 57.895 0.00 0.00 41.83 3.66
5160 13480 3.283684 CTTGCCGAAACCACGCCA 61.284 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.