Multiple sequence alignment - TraesCS1B01G316600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G316600 chr1B 100.000 4663 0 0 1 4663 541005631 541010293 0.000000e+00 8612.0
1 TraesCS1B01G316600 chr1B 87.778 90 3 5 4392 4474 533854928 533855016 1.070000e-16 99.0
2 TraesCS1B01G316600 chr1D 89.822 3999 204 77 254 4182 403054261 403058126 0.000000e+00 4942.0
3 TraesCS1B01G316600 chr1D 95.288 191 9 0 4473 4663 389600700 389600510 2.110000e-78 303.0
4 TraesCS1B01G316600 chr1D 94.737 190 10 0 4473 4662 418610882 418611071 3.530000e-76 296.0
5 TraesCS1B01G316600 chr1D 82.738 168 8 3 4233 4390 403058454 403058610 3.790000e-26 130.0
6 TraesCS1B01G316600 chr1D 90.361 83 3 1 4397 4474 28624684 28624766 2.300000e-18 104.0
7 TraesCS1B01G316600 chr1A 88.253 2639 198 61 5 2593 498169225 498171801 0.000000e+00 3053.0
8 TraesCS1B01G316600 chr1A 95.519 1205 45 3 2645 3841 498171802 498173005 0.000000e+00 1917.0
9 TraesCS1B01G316600 chr1A 97.701 87 2 0 4147 4233 498173383 498173469 2.910000e-32 150.0
10 TraesCS1B01G316600 chr1A 91.304 46 0 3 4233 4278 498173513 498173554 5.040000e-05 60.2
11 TraesCS1B01G316600 chr1A 100.000 31 0 0 4360 4390 14256245 14256215 1.810000e-04 58.4
12 TraesCS1B01G316600 chr7D 95.288 191 9 0 4473 4663 262707822 262707632 2.110000e-78 303.0
13 TraesCS1B01G316600 chr7D 94.764 191 10 0 4473 4663 46531581 46531771 9.810000e-77 298.0
14 TraesCS1B01G316600 chr7D 87.912 91 3 3 4391 4474 612014351 612014262 2.970000e-17 100.0
15 TraesCS1B01G316600 chr2A 95.263 190 9 0 4473 4662 645957396 645957207 7.580000e-78 302.0
16 TraesCS1B01G316600 chr7B 94.764 191 10 0 4473 4663 606146909 606147099 9.810000e-77 298.0
17 TraesCS1B01G316600 chr7B 94.286 35 2 0 271 305 719069762 719069796 2.000000e-03 54.7
18 TraesCS1B01G316600 chr2D 94.764 191 10 0 4473 4663 114347680 114347870 9.810000e-77 298.0
19 TraesCS1B01G316600 chr2D 94.444 72 4 0 4405 4476 7067017 7066946 1.370000e-20 111.0
20 TraesCS1B01G316600 chr4A 94.241 191 11 0 4473 4663 560966597 560966787 4.560000e-75 292.0
21 TraesCS1B01G316600 chr4A 92.308 78 2 1 4401 4474 608230666 608230589 1.770000e-19 108.0
22 TraesCS1B01G316600 chr4A 87.640 89 5 1 4392 4474 706469550 706469638 1.070000e-16 99.0
23 TraesCS1B01G316600 chr4B 93.717 191 12 0 4473 4663 408179133 408178943 2.120000e-73 287.0
24 TraesCS1B01G316600 chr3B 91.765 85 0 3 4398 4476 759005589 759005506 1.370000e-20 111.0
25 TraesCS1B01G316600 chr5A 95.652 69 2 1 4405 4473 566559920 566559987 4.930000e-20 110.0
26 TraesCS1B01G316600 chr3A 93.243 74 3 2 4405 4476 9975963 9975890 1.770000e-19 108.0
27 TraesCS1B01G316600 chr2B 100.000 31 0 0 4360 4390 59004676 59004646 1.810000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G316600 chr1B 541005631 541010293 4662 False 8612.00 8612 100.00000 1 4663 1 chr1B.!!$F2 4662
1 TraesCS1B01G316600 chr1D 403054261 403058610 4349 False 2536.00 4942 86.28000 254 4390 2 chr1D.!!$F3 4136
2 TraesCS1B01G316600 chr1A 498169225 498173554 4329 False 1295.05 3053 93.19425 5 4278 4 chr1A.!!$F1 4273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 306 0.250989 GTGAAACCAACCCATCCGGA 60.251 55.0 6.61 6.61 34.64 5.14 F
852 877 0.257039 CCTCCATTCCCCTGAACCTG 59.743 60.0 0.00 0.00 32.13 4.00 F
2469 2537 0.107165 GGGTTAGGAGCCATGGTGTC 60.107 60.0 14.67 10.56 43.10 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2165 0.872388 CACAGTTTGGTTAGGTCCGC 59.128 55.0 0.00 0.0 0.00 5.54 R
2588 2656 1.219646 TAAAGGTCGTTTCACGGTGC 58.780 50.0 2.51 0.0 42.81 5.01 R
4356 4962 0.114560 TCAGGAACGGAGGGAGTTCT 59.885 55.0 8.66 0.0 45.20 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 102 6.040729 TCCACAATTTGTGTTTCATCACATCT 59.959 34.615 24.01 0.00 46.45 2.90
135 138 3.350219 AAAACCATCGCATCACTACCT 57.650 42.857 0.00 0.00 0.00 3.08
150 153 5.368145 TCACTACCTATGCCATAAAAGCTG 58.632 41.667 0.00 0.00 0.00 4.24
190 193 9.868277 TTAATTCAACAAAACACAAGACTTCAT 57.132 25.926 0.00 0.00 0.00 2.57
203 206 4.965119 AGACTTCATAAATCAAACGGGC 57.035 40.909 0.00 0.00 0.00 6.13
219 222 2.624364 ACGGGCGTTTTAACCTGAAAAT 59.376 40.909 0.00 0.00 36.12 1.82
236 239 7.406031 CTGAAAATCAGGTCTACAGGTAGTA 57.594 40.000 6.37 0.00 40.71 1.82
243 246 7.403837 TCAGGTCTACAGGTAGTATAGGAAT 57.596 40.000 6.37 0.00 34.84 3.01
247 250 8.902881 AGGTCTACAGGTAGTATAGGAATACAT 58.097 37.037 6.37 0.00 40.49 2.29
302 306 0.250989 GTGAAACCAACCCATCCGGA 60.251 55.000 6.61 6.61 34.64 5.14
305 309 1.476488 GAAACCAACCCATCCGGATTG 59.524 52.381 16.19 11.97 34.64 2.67
314 318 4.295407 TCCGGATTGGAGCCCTAG 57.705 61.111 0.00 0.00 43.74 3.02
337 341 3.061697 ACTCGACACGTTCTTGTGAAAAC 59.938 43.478 0.24 0.00 42.55 2.43
338 342 2.994578 TCGACACGTTCTTGTGAAAACA 59.005 40.909 0.24 0.00 42.55 2.83
341 351 4.493382 CGACACGTTCTTGTGAAAACATCA 60.493 41.667 0.24 0.00 42.55 3.07
394 404 2.101582 GAGTCTGGATAGGCATCACGTT 59.898 50.000 0.00 0.00 32.32 3.99
403 413 5.177696 GGATAGGCATCACGTTCAATCTTAC 59.822 44.000 0.00 0.00 32.32 2.34
404 414 3.937814 AGGCATCACGTTCAATCTTACA 58.062 40.909 0.00 0.00 0.00 2.41
406 416 4.154195 AGGCATCACGTTCAATCTTACAAC 59.846 41.667 0.00 0.00 0.00 3.32
412 423 6.259638 TCACGTTCAATCTTACAACAAAACC 58.740 36.000 0.00 0.00 0.00 3.27
426 446 4.649088 ACAAAACCTTGCCAGTTACTTC 57.351 40.909 0.00 0.00 35.84 3.01
451 471 2.182284 CGGTTATGGCCACGACGA 59.818 61.111 8.16 0.00 0.00 4.20
460 480 3.968568 CCACGACGACGGTGTCCA 61.969 66.667 12.58 0.00 44.46 4.02
469 489 2.262915 CGGTGTCCAGTGCTCTCC 59.737 66.667 0.00 0.00 0.00 3.71
562 583 8.485392 TGATTTCAAAGATCAGAAAGGGTTTTT 58.515 29.630 11.77 0.00 37.19 1.94
633 658 8.412456 TCAAAGATTTGATGCAGACTTTTAACA 58.588 29.630 3.91 0.00 41.88 2.41
657 682 0.678684 ATAAAAACTCCACGGGGCCG 60.679 55.000 0.00 0.00 46.03 6.13
678 703 2.724977 TGGAACACGACATCTCTGTC 57.275 50.000 0.00 0.00 46.89 3.51
685 710 3.756739 GACATCTCTGTCTGCCAGG 57.243 57.895 0.00 0.00 46.84 4.45
686 711 0.461693 GACATCTCTGTCTGCCAGGC 60.462 60.000 3.66 3.66 46.84 4.85
687 712 1.521010 CATCTCTGTCTGCCAGGCG 60.521 63.158 7.03 1.56 41.83 5.52
688 713 3.382803 ATCTCTGTCTGCCAGGCGC 62.383 63.158 7.03 0.00 41.83 6.53
728 753 2.710902 GCCCTTGGTGATTTCGCCC 61.711 63.158 7.66 0.00 45.66 6.13
759 784 1.128611 CGTTTCTTCGCTGCGTGAG 59.871 57.895 22.48 19.52 0.00 3.51
761 786 0.944311 GTTTCTTCGCTGCGTGAGGA 60.944 55.000 22.48 12.94 0.00 3.71
810 835 3.532155 GGCGCAGATCTCTCCCGT 61.532 66.667 10.83 0.00 0.00 5.28
849 874 0.548510 CTCCCTCCATTCCCCTGAAC 59.451 60.000 0.00 0.00 32.13 3.18
850 875 0.919289 TCCCTCCATTCCCCTGAACC 60.919 60.000 0.00 0.00 32.13 3.62
851 876 0.921256 CCCTCCATTCCCCTGAACCT 60.921 60.000 0.00 0.00 32.13 3.50
852 877 0.257039 CCTCCATTCCCCTGAACCTG 59.743 60.000 0.00 0.00 32.13 4.00
853 878 1.289160 CTCCATTCCCCTGAACCTGA 58.711 55.000 0.00 0.00 32.13 3.86
854 879 1.635487 CTCCATTCCCCTGAACCTGAA 59.365 52.381 0.00 0.00 32.13 3.02
917 942 4.959596 GCCGCATCTCCGCTCTCC 62.960 72.222 0.00 0.00 0.00 3.71
918 943 4.637489 CCGCATCTCCGCTCTCCG 62.637 72.222 0.00 0.00 0.00 4.63
920 945 4.959596 GCATCTCCGCTCTCCGCC 62.960 72.222 0.00 0.00 35.03 6.13
921 946 3.531207 CATCTCCGCTCTCCGCCA 61.531 66.667 0.00 0.00 35.03 5.69
922 947 3.532155 ATCTCCGCTCTCCGCCAC 61.532 66.667 0.00 0.00 35.03 5.01
984 1017 2.029743 CTAGACAGCGAGGGAGAGC 58.970 63.158 0.00 0.00 0.00 4.09
1002 1035 1.482955 CGTCGGCTTAATCGCGATG 59.517 57.895 24.47 11.65 32.30 3.84
1003 1036 1.853319 GTCGGCTTAATCGCGATGG 59.147 57.895 24.47 16.41 0.00 3.51
1004 1037 1.954146 TCGGCTTAATCGCGATGGC 60.954 57.895 24.47 24.29 0.00 4.40
1056 1089 2.477176 CGCTCTGTCCCTCCTCTCG 61.477 68.421 0.00 0.00 0.00 4.04
1060 1093 1.755008 CTGTCCCTCCTCTCGGTCC 60.755 68.421 0.00 0.00 0.00 4.46
1071 1104 0.327287 TCTCGGTCCTCCTCCTCCTA 60.327 60.000 0.00 0.00 0.00 2.94
1158 1200 1.982395 CTACCCGCACCACTCCAGA 60.982 63.158 0.00 0.00 0.00 3.86
1207 1250 3.481180 TTTTTCCGACCGCCCCTA 58.519 55.556 0.00 0.00 0.00 3.53
1290 1333 0.577269 GATACGTGCTTCATGGCGTC 59.423 55.000 0.00 0.00 38.56 5.19
1440 1485 2.555664 TCTGATTCTGGGCTTCTCCTT 58.444 47.619 0.00 0.00 34.39 3.36
1452 1497 2.416893 GCTTCTCCTTCTTGTTTAGGCG 59.583 50.000 0.00 0.00 0.00 5.52
1589 1634 6.081872 GCTTTTCAGCTCATAGGCATTATT 57.918 37.500 0.00 0.00 43.51 1.40
1642 1689 4.934001 TCTCTCTTGCATGTTTCATCTGAC 59.066 41.667 0.00 0.00 0.00 3.51
1726 1778 7.612244 TCATATGTACTCTCTTATAGGGCACTC 59.388 40.741 0.00 0.00 0.00 3.51
1887 1952 3.058293 TGATCAATCGTGTCCAAACTTGC 60.058 43.478 0.00 0.00 0.00 4.01
2086 2153 1.198408 GCACCTTTGTTAGCCGGTTAC 59.802 52.381 1.90 0.00 0.00 2.50
2098 2165 2.012051 GCCGGTTACAATCCAGTCCAG 61.012 57.143 1.90 0.00 0.00 3.86
2131 2198 5.954296 CAAACTGTGGACAGATCTTCATT 57.046 39.130 13.74 0.00 46.59 2.57
2306 2373 9.548208 GAAAAAGAGCTAAAACATCATACTGTC 57.452 33.333 0.00 0.00 0.00 3.51
2307 2374 8.854614 AAAAGAGCTAAAACATCATACTGTCT 57.145 30.769 0.00 0.00 0.00 3.41
2308 2375 7.840342 AAGAGCTAAAACATCATACTGTCTG 57.160 36.000 0.00 0.00 0.00 3.51
2309 2376 6.940739 AGAGCTAAAACATCATACTGTCTGT 58.059 36.000 0.00 0.00 0.00 3.41
2335 2402 3.448660 AGTTACCCTACGGTGGTACATTC 59.551 47.826 0.00 0.00 44.40 2.67
2342 2409 4.023365 CCTACGGTGGTACATTCTACTAGC 60.023 50.000 0.00 0.00 44.52 3.42
2368 2435 5.125417 GGCCAAATTCTATGCTCAAACTACA 59.875 40.000 0.00 0.00 0.00 2.74
2370 2437 7.260603 GCCAAATTCTATGCTCAAACTACAAT 58.739 34.615 0.00 0.00 0.00 2.71
2428 2496 8.810652 TGTTTTCCTAATTGTATTTTGTGCTC 57.189 30.769 0.00 0.00 0.00 4.26
2456 2524 6.018832 CACAAGTTTTCAATGCAAAGGGTTAG 60.019 38.462 0.00 0.00 0.00 2.34
2469 2537 0.107165 GGGTTAGGAGCCATGGTGTC 60.107 60.000 14.67 10.56 43.10 3.67
2588 2656 3.058016 CACTCAAACCCAATGCACTACAG 60.058 47.826 0.00 0.00 0.00 2.74
2626 2694 6.267699 ACCTTTATATGGCCTAATTTGGAAGC 59.732 38.462 10.34 0.00 0.00 3.86
2797 2865 8.617809 GTGTATGGTAGAAAGTTGAACTTCAAA 58.382 33.333 11.44 0.00 37.47 2.69
2821 2889 5.367060 AGGGTCTGAGAGTCTTACTGTTTTT 59.633 40.000 0.00 0.00 0.00 1.94
2861 2929 6.370718 GTGTTATAAAATGACCAGAGAACGGT 59.629 38.462 0.00 0.00 40.30 4.83
2882 2950 5.235186 CGGTGAAGATATGCAAGTTCTAAGG 59.765 44.000 0.00 0.00 0.00 2.69
2909 2977 1.403647 CGCGGTGAGAAGTATGAACCA 60.404 52.381 0.00 0.00 0.00 3.67
2913 2981 3.306088 CGGTGAGAAGTATGAACCACACT 60.306 47.826 0.00 0.00 0.00 3.55
3251 3327 3.565482 GTCAGAATGTGCACAGAAAGGAA 59.435 43.478 25.84 4.44 37.40 3.36
3269 3345 9.034800 AGAAAGGAATTGCAGGTATAATTTTCA 57.965 29.630 0.00 0.00 0.00 2.69
3300 3376 2.159435 CCTTTTTGGCGGTCCTAATTCG 60.159 50.000 0.00 0.00 0.00 3.34
3410 3486 2.808543 CCTTCTGTTCTTCAACCTTCGG 59.191 50.000 0.00 0.00 0.00 4.30
3413 3489 0.882927 TGTTCTTCAACCTTCGGCCG 60.883 55.000 22.12 22.12 0.00 6.13
3473 3549 1.488393 GAGGTCATCAAGGGGGAGAAG 59.512 57.143 0.00 0.00 0.00 2.85
3527 3603 4.055360 CGTTTGACAAGGTCTATCACACA 58.945 43.478 0.00 0.00 33.15 3.72
3550 3626 1.431440 GCAACTGCACGGACAACAA 59.569 52.632 0.00 0.00 41.59 2.83
3663 3739 1.217882 GAGCTGCAACGTGTGTTAGT 58.782 50.000 1.02 0.00 36.28 2.24
3700 3776 2.892334 GAACGCCGCTTGTTGCTGA 61.892 57.895 0.00 0.00 40.11 4.26
3714 3790 1.619654 TGCTGAAGTTGGGGTTCATG 58.380 50.000 0.00 0.00 33.49 3.07
3715 3791 0.890683 GCTGAAGTTGGGGTTCATGG 59.109 55.000 0.00 0.00 33.49 3.66
3722 3798 1.139498 TTGGGGTTCATGGAGGAGCA 61.139 55.000 0.00 0.00 0.00 4.26
3749 3825 1.592400 CGGGTCGAACTGAGCTGGTA 61.592 60.000 2.04 0.00 45.73 3.25
3781 3857 0.251877 TGGTCGTCCAGATGGTACCA 60.252 55.000 18.99 18.99 39.03 3.25
3790 3866 2.749621 CCAGATGGTACCAGTTTCTTGC 59.250 50.000 21.41 2.20 0.00 4.01
3841 3982 7.995289 TGGCTACCAGTGTTTATTTATTGATG 58.005 34.615 0.00 0.00 0.00 3.07
3842 3983 7.831690 TGGCTACCAGTGTTTATTTATTGATGA 59.168 33.333 0.00 0.00 0.00 2.92
3843 3984 8.682710 GGCTACCAGTGTTTATTTATTGATGAA 58.317 33.333 0.00 0.00 0.00 2.57
3863 4004 9.460019 TGATGAATGTCTAGATAGTATCAGAGG 57.540 37.037 12.66 0.23 0.00 3.69
3864 4005 9.679661 GATGAATGTCTAGATAGTATCAGAGGA 57.320 37.037 12.66 2.41 0.00 3.71
3865 4006 8.856153 TGAATGTCTAGATAGTATCAGAGGAC 57.144 38.462 12.66 12.97 0.00 3.85
3866 4007 8.440771 TGAATGTCTAGATAGTATCAGAGGACA 58.559 37.037 19.56 19.56 0.00 4.02
3867 4008 8.862325 AATGTCTAGATAGTATCAGAGGACAG 57.138 38.462 20.74 7.26 0.00 3.51
3868 4009 7.619512 TGTCTAGATAGTATCAGAGGACAGA 57.380 40.000 12.66 1.18 0.00 3.41
3869 4010 7.446769 TGTCTAGATAGTATCAGAGGACAGAC 58.553 42.308 12.66 11.46 0.00 3.51
3870 4011 6.877322 GTCTAGATAGTATCAGAGGACAGACC 59.123 46.154 12.66 0.00 39.35 3.85
3871 4012 4.993028 AGATAGTATCAGAGGACAGACCC 58.007 47.826 12.66 0.00 40.05 4.46
3872 4013 4.667858 AGATAGTATCAGAGGACAGACCCT 59.332 45.833 12.66 0.00 40.05 4.34
3873 4014 3.025322 AGTATCAGAGGACAGACCCTG 57.975 52.381 0.00 0.00 40.05 4.45
3875 4016 2.334006 ATCAGAGGACAGACCCTGTT 57.666 50.000 0.82 0.00 45.44 3.16
3876 4017 1.342074 TCAGAGGACAGACCCTGTTG 58.658 55.000 0.82 0.00 45.44 3.33
3877 4018 1.133167 TCAGAGGACAGACCCTGTTGA 60.133 52.381 0.82 0.00 45.44 3.18
3878 4019 1.905215 CAGAGGACAGACCCTGTTGAT 59.095 52.381 0.82 0.00 45.44 2.57
3879 4020 2.304180 CAGAGGACAGACCCTGTTGATT 59.696 50.000 0.82 0.00 45.44 2.57
3880 4021 3.515502 CAGAGGACAGACCCTGTTGATTA 59.484 47.826 0.82 0.00 45.44 1.75
3881 4022 3.772025 AGAGGACAGACCCTGTTGATTAG 59.228 47.826 0.82 0.00 45.44 1.73
3882 4023 3.515901 GAGGACAGACCCTGTTGATTAGT 59.484 47.826 0.82 0.00 45.44 2.24
3883 4024 3.261897 AGGACAGACCCTGTTGATTAGTG 59.738 47.826 0.82 0.00 45.44 2.74
3884 4025 3.008049 GGACAGACCCTGTTGATTAGTGT 59.992 47.826 0.82 0.00 45.44 3.55
3885 4026 4.505039 GGACAGACCCTGTTGATTAGTGTT 60.505 45.833 0.82 0.00 45.44 3.32
3886 4027 4.642429 ACAGACCCTGTTGATTAGTGTTC 58.358 43.478 0.00 0.00 42.59 3.18
3887 4028 3.679980 CAGACCCTGTTGATTAGTGTTCG 59.320 47.826 0.00 0.00 0.00 3.95
3888 4029 3.323979 AGACCCTGTTGATTAGTGTTCGT 59.676 43.478 0.00 0.00 0.00 3.85
3889 4030 3.399330 ACCCTGTTGATTAGTGTTCGTG 58.601 45.455 0.00 0.00 0.00 4.35
3890 4031 2.742053 CCCTGTTGATTAGTGTTCGTGG 59.258 50.000 0.00 0.00 0.00 4.94
3891 4032 3.399330 CCTGTTGATTAGTGTTCGTGGT 58.601 45.455 0.00 0.00 0.00 4.16
3918 4059 0.540923 AGGCAGGCAGAGATGAGTTC 59.459 55.000 0.00 0.00 0.00 3.01
3919 4060 0.809241 GGCAGGCAGAGATGAGTTCG 60.809 60.000 0.00 0.00 0.00 3.95
3939 4080 2.742053 CGTTGTTAGAGTTGGTCCATGG 59.258 50.000 4.97 4.97 0.00 3.66
3970 4111 2.137523 GAGCTTGTGGTGCCATTTTTG 58.862 47.619 0.00 0.00 0.00 2.44
3976 4118 3.291584 TGTGGTGCCATTTTTGTCTGTA 58.708 40.909 0.00 0.00 0.00 2.74
3977 4119 3.317711 TGTGGTGCCATTTTTGTCTGTAG 59.682 43.478 0.00 0.00 0.00 2.74
3978 4120 3.568007 GTGGTGCCATTTTTGTCTGTAGA 59.432 43.478 0.00 0.00 0.00 2.59
4019 4161 4.375272 TCTCTTTTCTCACTCTTGTGCTG 58.625 43.478 0.00 0.00 43.49 4.41
4023 4165 2.706555 TCTCACTCTTGTGCTGTACG 57.293 50.000 0.00 0.00 43.49 3.67
4043 4185 5.762825 ACGGGTATATATATGTAGCACCG 57.237 43.478 17.21 17.55 0.00 4.94
4073 4215 5.180492 TGTTACCCTGAATTTGACGAACATC 59.820 40.000 0.00 0.00 0.00 3.06
4077 4219 3.062639 CCTGAATTTGACGAACATCTCCG 59.937 47.826 0.00 0.00 0.00 4.63
4141 4460 9.250624 GCTACTATTAGAACGAACTGAATCATT 57.749 33.333 0.00 0.00 0.00 2.57
4144 4463 9.823647 ACTATTAGAACGAACTGAATCATTCAT 57.176 29.630 0.00 0.00 39.30 2.57
4205 4757 3.076621 GTGGTGTGATGATGCTGAAGAA 58.923 45.455 0.00 0.00 0.00 2.52
4268 4864 4.178540 CCTTTCATTCATTGCAATCGCTT 58.821 39.130 9.53 0.00 39.64 4.68
4290 4886 2.417379 GCAGAAAGTATCGAGCACTCCA 60.417 50.000 3.17 0.00 35.08 3.86
4291 4887 3.849911 CAGAAAGTATCGAGCACTCCAA 58.150 45.455 3.17 0.00 0.00 3.53
4292 4888 4.437239 CAGAAAGTATCGAGCACTCCAAT 58.563 43.478 3.17 0.00 0.00 3.16
4293 4889 4.505922 CAGAAAGTATCGAGCACTCCAATC 59.494 45.833 3.17 1.62 0.00 2.67
4294 4890 3.460857 AAGTATCGAGCACTCCAATCC 57.539 47.619 3.17 0.00 0.00 3.01
4313 4919 2.050442 CGCAACCAACCGCCTTTC 60.050 61.111 0.00 0.00 0.00 2.62
4332 4938 3.425577 TCAATTCAATGCTTCATCGCC 57.574 42.857 0.00 0.00 0.00 5.54
4333 4939 2.099592 TCAATTCAATGCTTCATCGCCC 59.900 45.455 0.00 0.00 0.00 6.13
4334 4940 1.035139 ATTCAATGCTTCATCGCCCC 58.965 50.000 0.00 0.00 0.00 5.80
4335 4941 1.037030 TTCAATGCTTCATCGCCCCC 61.037 55.000 0.00 0.00 0.00 5.40
4336 4942 1.753848 CAATGCTTCATCGCCCCCA 60.754 57.895 0.00 0.00 0.00 4.96
4337 4943 1.000233 AATGCTTCATCGCCCCCAA 60.000 52.632 0.00 0.00 0.00 4.12
4338 4944 0.614415 AATGCTTCATCGCCCCCAAA 60.614 50.000 0.00 0.00 0.00 3.28
4340 4946 3.051392 GCTTCATCGCCCCCAAACG 62.051 63.158 0.00 0.00 0.00 3.60
4341 4947 1.674322 CTTCATCGCCCCCAAACGT 60.674 57.895 0.00 0.00 0.00 3.99
4342 4948 1.922135 CTTCATCGCCCCCAAACGTG 61.922 60.000 0.00 0.00 0.00 4.49
4343 4949 3.439540 CATCGCCCCCAAACGTGG 61.440 66.667 0.00 0.00 45.53 4.94
4368 4974 3.294038 TCCTACTAAGAACTCCCTCCG 57.706 52.381 0.00 0.00 0.00 4.63
4379 4985 2.108970 ACTCCCTCCGTTCCTGAATAC 58.891 52.381 0.00 0.00 0.00 1.89
4390 4996 6.204108 TCCGTTCCTGAATACAAGTCTTTTTC 59.796 38.462 0.00 0.00 0.00 2.29
4391 4997 6.017440 CCGTTCCTGAATACAAGTCTTTTTCA 60.017 38.462 3.57 3.57 0.00 2.69
4392 4998 7.414436 CGTTCCTGAATACAAGTCTTTTTCAA 58.586 34.615 4.70 0.00 0.00 2.69
4393 4999 8.076178 CGTTCCTGAATACAAGTCTTTTTCAAT 58.924 33.333 4.70 0.00 0.00 2.57
4428 5034 4.652679 TTTTAGAAAAGGAGGAGGACCC 57.347 45.455 0.00 0.00 36.73 4.46
4436 5042 4.390341 AGGAGGACCCTCTGCATC 57.610 61.111 15.03 0.00 43.31 3.91
4437 5043 1.709082 AGGAGGACCCTCTGCATCT 59.291 57.895 15.03 1.58 43.31 2.90
4438 5044 0.690411 AGGAGGACCCTCTGCATCTG 60.690 60.000 15.03 0.00 43.31 2.90
4439 5045 1.694133 GGAGGACCCTCTGCATCTGG 61.694 65.000 15.03 0.00 42.38 3.86
4440 5046 1.692042 AGGACCCTCTGCATCTGGG 60.692 63.158 14.84 14.84 46.07 4.45
4441 5047 2.191641 GACCCTCTGCATCTGGGC 59.808 66.667 15.96 2.55 44.56 5.36
4442 5048 3.746949 GACCCTCTGCATCTGGGCG 62.747 68.421 15.96 0.00 44.56 6.13
4443 5049 3.473647 CCCTCTGCATCTGGGCGA 61.474 66.667 5.97 0.00 36.28 5.54
4444 5050 2.815945 CCCTCTGCATCTGGGCGAT 61.816 63.158 5.97 0.00 36.28 4.58
4451 5057 2.156542 CATCTGGGCGATGCATACG 58.843 57.895 0.00 6.68 42.75 3.06
4452 5058 1.004560 ATCTGGGCGATGCATACGG 60.005 57.895 16.56 6.65 0.00 4.02
4457 5063 2.588877 GCGATGCATACGGCCACT 60.589 61.111 16.56 0.00 43.89 4.00
4458 5064 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
4459 5065 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
4460 5066 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
4461 5067 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
4462 5068 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
4463 5069 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
4464 5070 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
4465 5071 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
4466 5072 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
4467 5073 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
4468 5074 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
4469 5075 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
4470 5076 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
4471 5077 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
4473 5079 9.787435 ATACGGCCACTTTATTAATTATTCTCA 57.213 29.630 2.24 0.00 0.00 3.27
4474 5080 8.691661 ACGGCCACTTTATTAATTATTCTCAT 57.308 30.769 2.24 0.00 0.00 2.90
4475 5081 9.787435 ACGGCCACTTTATTAATTATTCTCATA 57.213 29.630 2.24 0.00 0.00 2.15
4478 5084 9.760660 GCCACTTTATTAATTATTCTCATAGCG 57.239 33.333 0.00 0.00 0.00 4.26
4557 5163 3.785859 CTAGCCCAGCGCCTTCCA 61.786 66.667 2.29 0.00 38.78 3.53
4558 5164 3.089874 TAGCCCAGCGCCTTCCAT 61.090 61.111 2.29 0.00 38.78 3.41
4559 5165 3.106986 TAGCCCAGCGCCTTCCATC 62.107 63.158 2.29 0.00 38.78 3.51
4561 5167 4.161295 CCCAGCGCCTTCCATCGA 62.161 66.667 2.29 0.00 0.00 3.59
4562 5168 2.109799 CCAGCGCCTTCCATCGAT 59.890 61.111 2.29 0.00 0.00 3.59
4563 5169 1.958205 CCAGCGCCTTCCATCGATC 60.958 63.158 2.29 0.00 0.00 3.69
4564 5170 1.068753 CAGCGCCTTCCATCGATCT 59.931 57.895 2.29 0.00 0.00 2.75
4565 5171 1.068753 AGCGCCTTCCATCGATCTG 59.931 57.895 2.29 0.00 0.00 2.90
4566 5172 1.958205 GCGCCTTCCATCGATCTGG 60.958 63.158 0.00 0.00 37.66 3.86
4567 5173 1.958205 CGCCTTCCATCGATCTGGC 60.958 63.158 14.05 14.05 36.16 4.85
4568 5174 1.599240 GCCTTCCATCGATCTGGCC 60.599 63.158 13.41 0.00 36.16 5.36
4569 5175 1.301244 CCTTCCATCGATCTGGCCG 60.301 63.158 0.00 0.00 36.16 6.13
4570 5176 1.443407 CTTCCATCGATCTGGCCGT 59.557 57.895 0.00 0.00 36.16 5.68
4571 5177 0.598680 CTTCCATCGATCTGGCCGTC 60.599 60.000 0.00 0.00 36.16 4.79
4572 5178 2.028125 TTCCATCGATCTGGCCGTCC 62.028 60.000 0.00 0.00 36.16 4.79
4573 5179 2.502492 CCATCGATCTGGCCGTCCT 61.502 63.158 0.00 0.00 0.00 3.85
4574 5180 1.300465 CATCGATCTGGCCGTCCTG 60.300 63.158 0.00 0.00 0.00 3.86
4575 5181 1.758514 ATCGATCTGGCCGTCCTGT 60.759 57.895 0.00 0.00 33.50 4.00
4576 5182 2.021068 ATCGATCTGGCCGTCCTGTG 62.021 60.000 0.00 0.00 33.50 3.66
4577 5183 2.512515 GATCTGGCCGTCCTGTGC 60.513 66.667 0.00 0.00 33.50 4.57
4584 5190 4.641645 CCGTCCTGTGCCAGCCAA 62.642 66.667 0.00 0.00 0.00 4.52
4585 5191 2.594303 CGTCCTGTGCCAGCCAAA 60.594 61.111 0.00 0.00 0.00 3.28
4586 5192 2.908073 CGTCCTGTGCCAGCCAAAC 61.908 63.158 0.00 0.00 0.00 2.93
4587 5193 2.594303 TCCTGTGCCAGCCAAACG 60.594 61.111 0.00 0.00 0.00 3.60
4588 5194 2.594303 CCTGTGCCAGCCAAACGA 60.594 61.111 0.00 0.00 0.00 3.85
4589 5195 2.639286 CTGTGCCAGCCAAACGAC 59.361 61.111 0.00 0.00 0.00 4.34
4590 5196 3.240606 CTGTGCCAGCCAAACGACG 62.241 63.158 0.00 0.00 0.00 5.12
4591 5197 2.970324 GTGCCAGCCAAACGACGA 60.970 61.111 0.00 0.00 0.00 4.20
4592 5198 2.203084 TGCCAGCCAAACGACGAA 60.203 55.556 0.00 0.00 0.00 3.85
4593 5199 2.250939 TGCCAGCCAAACGACGAAG 61.251 57.895 0.00 0.00 0.00 3.79
4594 5200 2.966309 GCCAGCCAAACGACGAAGG 61.966 63.158 0.00 0.87 0.00 3.46
4595 5201 2.325082 CCAGCCAAACGACGAAGGG 61.325 63.158 0.00 0.03 0.00 3.95
4596 5202 2.032071 AGCCAAACGACGAAGGGG 59.968 61.111 0.00 0.00 0.00 4.79
4597 5203 2.031465 GCCAAACGACGAAGGGGA 59.969 61.111 0.00 0.00 0.00 4.81
4598 5204 2.033194 GCCAAACGACGAAGGGGAG 61.033 63.158 0.00 0.00 0.00 4.30
4599 5205 1.669440 CCAAACGACGAAGGGGAGA 59.331 57.895 0.00 0.00 0.00 3.71
4600 5206 0.389948 CCAAACGACGAAGGGGAGAG 60.390 60.000 0.00 0.00 0.00 3.20
4601 5207 0.389948 CAAACGACGAAGGGGAGAGG 60.390 60.000 0.00 0.00 0.00 3.69
4602 5208 2.168666 AAACGACGAAGGGGAGAGGC 62.169 60.000 0.00 0.00 0.00 4.70
4603 5209 4.194720 CGACGAAGGGGAGAGGCG 62.195 72.222 0.00 0.00 0.00 5.52
4604 5210 3.069318 GACGAAGGGGAGAGGCGT 61.069 66.667 0.00 0.00 37.97 5.68
4605 5211 3.066233 GACGAAGGGGAGAGGCGTC 62.066 68.421 0.00 0.00 43.37 5.19
4606 5212 3.839432 CGAAGGGGAGAGGCGTCC 61.839 72.222 2.06 0.54 35.64 4.79
4607 5213 2.683933 GAAGGGGAGAGGCGTCCA 60.684 66.667 10.61 0.00 38.52 4.02
4608 5214 2.685380 AAGGGGAGAGGCGTCCAG 60.685 66.667 10.61 0.00 38.52 3.86
4632 5238 4.290622 CCCACACCAGGCAGGCTT 62.291 66.667 0.00 0.00 43.14 4.35
4633 5239 2.674380 CCACACCAGGCAGGCTTC 60.674 66.667 0.00 0.00 43.14 3.86
4634 5240 3.052082 CACACCAGGCAGGCTTCG 61.052 66.667 0.00 0.00 43.14 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 8.915057 AATCCTTTATCATTCGACATCATCTT 57.085 30.769 0.00 0.00 0.00 2.40
38 40 8.040727 TCTGAACTCAAATCCTTTATCATTCGA 58.959 33.333 0.00 0.00 0.00 3.71
39 41 8.201554 TCTGAACTCAAATCCTTTATCATTCG 57.798 34.615 0.00 0.00 0.00 3.34
106 109 3.526931 TGCGATGGTTTTTGGTCAAAA 57.473 38.095 4.92 4.92 38.40 2.44
110 113 2.228822 AGTGATGCGATGGTTTTTGGTC 59.771 45.455 0.00 0.00 0.00 4.02
119 122 2.341257 GCATAGGTAGTGATGCGATGG 58.659 52.381 0.00 0.00 39.15 3.51
135 138 2.223548 CGCAAGCAGCTTTTATGGCATA 60.224 45.455 4.38 2.32 42.61 3.14
150 153 9.804547 TTTGTTGAATTAATTTAAATCGCAAGC 57.195 25.926 6.95 0.00 37.18 4.01
163 166 9.868277 TGAAGTCTTGTGTTTTGTTGAATTAAT 57.132 25.926 0.00 0.00 0.00 1.40
166 169 9.868277 TTATGAAGTCTTGTGTTTTGTTGAATT 57.132 25.926 0.00 0.00 0.00 2.17
168 171 9.868277 ATTTATGAAGTCTTGTGTTTTGTTGAA 57.132 25.926 0.00 0.00 0.00 2.69
185 188 3.757745 ACGCCCGTTTGATTTATGAAG 57.242 42.857 0.00 0.00 0.00 3.02
190 193 4.277921 AGGTTAAAACGCCCGTTTGATTTA 59.722 37.500 18.08 5.63 46.22 1.40
199 202 2.778187 TTTTCAGGTTAAAACGCCCG 57.222 45.000 0.00 0.00 0.00 6.13
219 222 6.836714 TTCCTATACTACCTGTAGACCTGA 57.163 41.667 11.14 0.00 36.97 3.86
247 250 8.915036 GCTAGCCACTATATTAGGATTAGCTTA 58.085 37.037 2.29 0.00 35.77 3.09
250 253 7.354751 AGCTAGCCACTATATTAGGATTAGC 57.645 40.000 12.13 0.00 37.38 3.09
255 258 5.905088 AGGAAGCTAGCCACTATATTAGGA 58.095 41.667 12.13 0.00 0.00 2.94
260 263 4.040952 CCACAAGGAAGCTAGCCACTATAT 59.959 45.833 12.13 0.00 36.89 0.86
262 265 2.171448 CCACAAGGAAGCTAGCCACTAT 59.829 50.000 12.13 0.00 36.89 2.12
269 273 2.814336 GGTTTCACCACAAGGAAGCTAG 59.186 50.000 0.00 0.00 38.42 3.42
297 301 0.759436 GTCTAGGGCTCCAATCCGGA 60.759 60.000 6.61 6.61 43.61 5.14
299 303 0.676736 GAGTCTAGGGCTCCAATCCG 59.323 60.000 4.53 0.00 0.00 4.18
302 306 1.342076 TGTCGAGTCTAGGGCTCCAAT 60.342 52.381 8.84 0.00 0.00 3.16
305 309 1.716826 CGTGTCGAGTCTAGGGCTCC 61.717 65.000 8.84 0.00 0.00 4.70
311 315 3.059120 TCACAAGAACGTGTCGAGTCTAG 60.059 47.826 0.00 0.00 38.12 2.43
314 318 2.115348 TCACAAGAACGTGTCGAGTC 57.885 50.000 0.00 0.00 38.12 3.36
338 342 4.931601 CCATCCGATTCAACATCGTATGAT 59.068 41.667 10.36 0.00 39.27 2.45
341 351 3.067106 GCCATCCGATTCAACATCGTAT 58.933 45.455 3.72 0.00 39.67 3.06
349 359 6.826231 TCTGTATTTAAAGCCATCCGATTCAA 59.174 34.615 0.00 0.00 0.00 2.69
356 366 5.529060 CCAGACTCTGTATTTAAAGCCATCC 59.471 44.000 5.32 0.00 0.00 3.51
394 404 5.127845 TGGCAAGGTTTTGTTGTAAGATTGA 59.872 36.000 0.00 0.00 36.65 2.57
403 413 4.385358 AGTAACTGGCAAGGTTTTGTTG 57.615 40.909 0.00 0.00 36.65 3.33
404 414 4.464597 TGAAGTAACTGGCAAGGTTTTGTT 59.535 37.500 0.00 0.00 36.65 2.83
406 416 4.647424 TGAAGTAACTGGCAAGGTTTTG 57.353 40.909 0.00 0.00 37.36 2.44
412 423 4.666655 CGTCGATTTGAAGTAACTGGCAAG 60.667 45.833 0.00 0.00 0.00 4.01
426 446 1.063469 GTGGCCATAACCGTCGATTTG 59.937 52.381 9.72 0.00 0.00 2.32
451 471 2.574955 GGAGAGCACTGGACACCGT 61.575 63.158 0.00 0.00 0.00 4.83
460 480 3.374402 CGACGTGGGGAGAGCACT 61.374 66.667 0.00 0.00 0.00 4.40
492 512 6.251376 GTCGTTTGATGAAATAATTGTGCTCC 59.749 38.462 0.00 0.00 0.00 4.70
493 513 6.251376 GGTCGTTTGATGAAATAATTGTGCTC 59.749 38.462 0.00 0.00 0.00 4.26
562 583 7.883217 AGTTGAACATCGACTTTCTAACTAGA 58.117 34.615 15.92 0.00 37.87 2.43
609 630 8.416329 AGTGTTAAAAGTCTGCATCAAATCTTT 58.584 29.630 0.00 0.00 0.00 2.52
633 658 3.760151 GCCCCGTGGAGTTTTTATTTAGT 59.240 43.478 0.00 0.00 0.00 2.24
657 682 1.000955 ACAGAGATGTCGTGTTCCACC 59.999 52.381 0.00 0.00 0.00 4.61
714 739 1.969064 CACCGGGCGAAATCACCAA 60.969 57.895 6.32 0.00 0.00 3.67
715 740 2.359354 CACCGGGCGAAATCACCA 60.359 61.111 6.32 0.00 0.00 4.17
716 741 2.359478 ACACCGGGCGAAATCACC 60.359 61.111 6.32 0.00 0.00 4.02
717 742 2.867472 CACACCGGGCGAAATCAC 59.133 61.111 6.32 0.00 0.00 3.06
849 874 3.114616 CAGTCGCCACGCTTCAGG 61.115 66.667 0.00 0.00 0.00 3.86
850 875 3.114616 CCAGTCGCCACGCTTCAG 61.115 66.667 0.00 0.00 0.00 3.02
933 958 1.912043 ACCAATGGAGGTGGAGAAGAG 59.088 52.381 6.16 0.00 41.30 2.85
984 1017 1.482955 CATCGCGATTAAGCCGACG 59.517 57.895 21.14 0.22 0.00 5.12
1036 1069 2.043852 GAGGAGGGACAGAGCGGA 60.044 66.667 0.00 0.00 0.00 5.54
1056 1089 0.179012 CGACTAGGAGGAGGAGGACC 60.179 65.000 0.00 0.00 0.00 4.46
1060 1093 1.529713 GGCCGACTAGGAGGAGGAG 60.530 68.421 9.60 0.00 45.00 3.69
1108 1141 1.988406 GGTACACGGAGCTTCCCCT 60.988 63.158 0.00 0.00 31.13 4.79
1110 1143 2.582978 GGGTACACGGAGCTTCCC 59.417 66.667 0.00 0.00 31.13 3.97
1207 1250 2.046892 ATGAAGCAAGGCGAGCGT 60.047 55.556 0.00 0.00 37.01 5.07
1411 1456 1.421646 CCCAGAATCAGATACACCCCC 59.578 57.143 0.00 0.00 0.00 5.40
1440 1485 1.079405 CGCCCTCGCCTAAACAAGA 60.079 57.895 0.00 0.00 0.00 3.02
1452 1497 2.498726 CTCTTGAGCTCCGCCCTC 59.501 66.667 12.15 0.00 0.00 4.30
1488 1533 1.961277 CTTGCTCTTGCCCGACGTT 60.961 57.895 0.00 0.00 38.71 3.99
1808 1860 6.912951 ACCTGAACTGTACTGTACTAATGT 57.087 37.500 17.98 9.30 0.00 2.71
1856 1921 6.581712 TGGACACGATTGATCATTTAGATGA 58.418 36.000 0.00 0.00 45.81 2.92
1857 1922 6.849588 TGGACACGATTGATCATTTAGATG 57.150 37.500 0.00 0.00 37.00 2.90
1858 1923 7.554118 AGTTTGGACACGATTGATCATTTAGAT 59.446 33.333 0.00 0.00 40.48 1.98
1859 1924 6.878923 AGTTTGGACACGATTGATCATTTAGA 59.121 34.615 0.00 0.00 0.00 2.10
1861 1926 7.304735 CAAGTTTGGACACGATTGATCATTTA 58.695 34.615 0.00 0.00 0.00 1.40
1862 1927 5.964958 AGTTTGGACACGATTGATCATTT 57.035 34.783 0.00 0.00 0.00 2.32
1863 1928 5.702865 CAAGTTTGGACACGATTGATCATT 58.297 37.500 0.00 0.00 0.00 2.57
1874 1939 1.541588 GGATCCTGCAAGTTTGGACAC 59.458 52.381 3.84 0.00 32.16 3.67
1887 1952 2.173519 ACCAGCAACAATTGGATCCTG 58.826 47.619 14.23 5.56 37.89 3.86
2040 2106 8.292444 TCCCCTATCAAACTCAAATACAATTG 57.708 34.615 3.24 3.24 0.00 2.32
2098 2165 0.872388 CACAGTTTGGTTAGGTCCGC 59.128 55.000 0.00 0.00 0.00 5.54
2146 2213 6.294010 GCAAAAGTTCTACCTCTTTCGGATTT 60.294 38.462 0.00 0.00 33.53 2.17
2152 2219 6.392625 AAAGGCAAAAGTTCTACCTCTTTC 57.607 37.500 0.00 0.00 33.53 2.62
2237 2304 2.030457 CACTTGTGTCTCCGTGTGAAAC 59.970 50.000 0.00 0.00 37.35 2.78
2238 2305 2.276201 CACTTGTGTCTCCGTGTGAAA 58.724 47.619 0.00 0.00 0.00 2.69
2251 2318 6.127591 ACCTTGAGCTACTAGATACACTTGTG 60.128 42.308 0.00 0.00 36.20 3.33
2259 2326 8.818622 TTTTCTACACCTTGAGCTACTAGATA 57.181 34.615 0.00 0.00 0.00 1.98
2266 2333 5.238583 GCTCTTTTTCTACACCTTGAGCTA 58.761 41.667 0.00 0.00 41.42 3.32
2326 2393 2.698797 GGCCAGCTAGTAGAATGTACCA 59.301 50.000 0.00 0.00 0.00 3.25
2335 2402 4.453819 GCATAGAATTTGGCCAGCTAGTAG 59.546 45.833 5.11 0.00 0.00 2.57
2342 2409 4.159135 AGTTTGAGCATAGAATTTGGCCAG 59.841 41.667 5.11 0.00 0.00 4.85
2368 2435 7.094805 GGTGAACATAGTGTGTGACATGTTATT 60.095 37.037 0.00 0.00 41.14 1.40
2370 2437 5.699001 GGTGAACATAGTGTGTGACATGTTA 59.301 40.000 0.00 0.00 41.14 2.41
2428 2496 4.260456 CCTTTGCATTGAAAACTTGTGCAG 60.260 41.667 0.00 0.00 45.31 4.41
2456 2524 1.771255 AGGATAAGACACCATGGCTCC 59.229 52.381 13.04 6.88 31.94 4.70
2469 2537 6.351711 TGTGGACATGATCAAAGAGGATAAG 58.648 40.000 0.00 0.00 0.00 1.73
2528 2596 9.464714 AACAGATACATGATATGTCGAAGTAAC 57.535 33.333 0.00 0.00 39.09 2.50
2535 2603 5.985530 ACCACAACAGATACATGATATGTCG 59.014 40.000 0.00 0.00 39.09 4.35
2588 2656 1.219646 TAAAGGTCGTTTCACGGTGC 58.780 50.000 2.51 0.00 42.81 5.01
2593 2661 4.196971 AGGCCATATAAAGGTCGTTTCAC 58.803 43.478 5.01 0.00 35.42 3.18
2611 2679 4.466370 AGGTTTAAGCTTCCAAATTAGGCC 59.534 41.667 0.00 0.00 0.00 5.19
2612 2680 5.661056 AGGTTTAAGCTTCCAAATTAGGC 57.339 39.130 0.00 0.00 0.00 3.93
2626 2694 6.920210 CAGCAAAAAGAAGAGGAAGGTTTAAG 59.080 38.462 0.00 0.00 0.00 1.85
2702 2770 6.153340 CCTGAAAAATCCTCTTTATCAAGCCA 59.847 38.462 0.00 0.00 0.00 4.75
2797 2865 3.818295 ACAGTAAGACTCTCAGACCCT 57.182 47.619 0.00 0.00 0.00 4.34
2882 2950 2.205307 ACTTCTCACCGCGCTTATAC 57.795 50.000 5.56 0.00 0.00 1.47
2909 2977 5.147330 TGTCGGTGAAGAAATCATAGTGT 57.853 39.130 0.00 0.00 40.97 3.55
2987 3055 1.738099 CCCTCCTTCTGCAACGTCG 60.738 63.158 0.00 0.00 0.00 5.12
3251 3327 7.592885 AGAGCATGAAAATTATACCTGCAAT 57.407 32.000 0.00 0.00 0.00 3.56
3269 3345 2.289010 CCGCCAAAAAGGAAAAGAGCAT 60.289 45.455 0.00 0.00 41.22 3.79
3300 3376 5.284079 TCGGGTGTCTAATTAATAACTCGC 58.716 41.667 7.96 5.49 0.00 5.03
3413 3489 4.131088 GGGTCTGTCTCGGCGTCC 62.131 72.222 6.85 0.00 0.00 4.79
3527 3603 3.872603 TCCGTGCAGTTGCCTGGT 61.873 61.111 1.06 0.00 41.18 4.00
3663 3739 1.640149 TCCAAGGATTCCATTCCAGCA 59.360 47.619 5.29 0.00 38.32 4.41
3700 3776 1.355720 CTCCTCCATGAACCCCAACTT 59.644 52.381 0.00 0.00 0.00 2.66
3714 3790 3.207669 CGCCATTGCTGCTCCTCC 61.208 66.667 0.00 0.00 34.43 4.30
3715 3791 3.207669 CCGCCATTGCTGCTCCTC 61.208 66.667 0.00 0.00 34.43 3.71
3722 3798 2.746277 GTTCGACCCGCCATTGCT 60.746 61.111 0.00 0.00 34.43 3.91
3749 3825 1.295423 CGACCAAACCTCGTGGGAT 59.705 57.895 8.63 0.00 40.75 3.85
3781 3857 3.840666 TCATCAGGGAGTAGCAAGAAACT 59.159 43.478 0.00 0.00 0.00 2.66
3790 3866 3.261897 ACCAACTTGTCATCAGGGAGTAG 59.738 47.826 0.00 0.00 0.00 2.57
3841 3982 8.856153 TGTCCTCTGATACTATCTAGACATTC 57.144 38.462 0.00 0.00 0.00 2.67
3842 3983 8.664992 TCTGTCCTCTGATACTATCTAGACATT 58.335 37.037 0.00 0.00 0.00 2.71
3843 3984 8.100791 GTCTGTCCTCTGATACTATCTAGACAT 58.899 40.741 0.00 0.00 32.27 3.06
3844 3985 7.446769 GTCTGTCCTCTGATACTATCTAGACA 58.553 42.308 0.00 0.00 32.27 3.41
3845 3986 6.877322 GGTCTGTCCTCTGATACTATCTAGAC 59.123 46.154 0.00 0.00 0.00 2.59
3846 3987 6.013206 GGGTCTGTCCTCTGATACTATCTAGA 60.013 46.154 0.00 0.00 36.25 2.43
3847 3988 6.012858 AGGGTCTGTCCTCTGATACTATCTAG 60.013 46.154 0.00 0.00 36.25 2.43
3848 3989 5.852807 AGGGTCTGTCCTCTGATACTATCTA 59.147 44.000 0.00 0.00 36.25 1.98
3849 3990 4.667858 AGGGTCTGTCCTCTGATACTATCT 59.332 45.833 0.00 0.00 36.25 1.98
3850 3991 4.764823 CAGGGTCTGTCCTCTGATACTATC 59.235 50.000 4.34 0.00 36.96 2.08
3851 3992 4.169068 ACAGGGTCTGTCCTCTGATACTAT 59.831 45.833 13.25 0.00 41.21 2.12
3852 3993 3.528078 ACAGGGTCTGTCCTCTGATACTA 59.472 47.826 13.25 0.00 41.21 1.82
3853 3994 2.313342 ACAGGGTCTGTCCTCTGATACT 59.687 50.000 13.25 0.00 41.21 2.12
3854 3995 2.741145 ACAGGGTCTGTCCTCTGATAC 58.259 52.381 13.25 0.00 41.21 2.24
3855 3996 3.099905 CAACAGGGTCTGTCCTCTGATA 58.900 50.000 13.25 0.00 44.62 2.15
3856 3997 1.905215 CAACAGGGTCTGTCCTCTGAT 59.095 52.381 13.25 2.89 44.62 2.90
3857 3998 1.133167 TCAACAGGGTCTGTCCTCTGA 60.133 52.381 13.25 0.00 44.62 3.27
3858 3999 1.342074 TCAACAGGGTCTGTCCTCTG 58.658 55.000 0.75 7.49 44.62 3.35
3859 4000 2.334006 ATCAACAGGGTCTGTCCTCT 57.666 50.000 0.75 0.00 44.62 3.69
3860 4001 3.515901 ACTAATCAACAGGGTCTGTCCTC 59.484 47.826 0.75 0.00 44.62 3.71
3861 4002 3.261897 CACTAATCAACAGGGTCTGTCCT 59.738 47.826 0.75 0.00 44.62 3.85
3862 4003 3.008049 ACACTAATCAACAGGGTCTGTCC 59.992 47.826 0.75 0.00 44.62 4.02
3863 4004 4.273148 ACACTAATCAACAGGGTCTGTC 57.727 45.455 0.75 0.00 44.62 3.51
3865 4006 3.679980 CGAACACTAATCAACAGGGTCTG 59.320 47.826 0.00 0.00 37.52 3.51
3866 4007 3.323979 ACGAACACTAATCAACAGGGTCT 59.676 43.478 0.00 0.00 0.00 3.85
3867 4008 3.432252 CACGAACACTAATCAACAGGGTC 59.568 47.826 0.00 0.00 0.00 4.46
3868 4009 3.399330 CACGAACACTAATCAACAGGGT 58.601 45.455 0.00 0.00 0.00 4.34
3869 4010 2.742053 CCACGAACACTAATCAACAGGG 59.258 50.000 0.00 0.00 0.00 4.45
3870 4011 3.399330 ACCACGAACACTAATCAACAGG 58.601 45.455 0.00 0.00 0.00 4.00
3871 4012 5.204833 CAAACCACGAACACTAATCAACAG 58.795 41.667 0.00 0.00 0.00 3.16
3872 4013 4.636648 ACAAACCACGAACACTAATCAACA 59.363 37.500 0.00 0.00 0.00 3.33
3873 4014 4.967575 CACAAACCACGAACACTAATCAAC 59.032 41.667 0.00 0.00 0.00 3.18
3874 4015 4.496673 GCACAAACCACGAACACTAATCAA 60.497 41.667 0.00 0.00 0.00 2.57
3875 4016 3.002862 GCACAAACCACGAACACTAATCA 59.997 43.478 0.00 0.00 0.00 2.57
3876 4017 3.250040 AGCACAAACCACGAACACTAATC 59.750 43.478 0.00 0.00 0.00 1.75
3877 4018 3.211045 AGCACAAACCACGAACACTAAT 58.789 40.909 0.00 0.00 0.00 1.73
3878 4019 2.634600 AGCACAAACCACGAACACTAA 58.365 42.857 0.00 0.00 0.00 2.24
3879 4020 2.319136 AGCACAAACCACGAACACTA 57.681 45.000 0.00 0.00 0.00 2.74
3880 4021 2.210116 CTAGCACAAACCACGAACACT 58.790 47.619 0.00 0.00 0.00 3.55
3881 4022 1.263217 CCTAGCACAAACCACGAACAC 59.737 52.381 0.00 0.00 0.00 3.32
3882 4023 1.588674 CCTAGCACAAACCACGAACA 58.411 50.000 0.00 0.00 0.00 3.18
3883 4024 0.237498 GCCTAGCACAAACCACGAAC 59.763 55.000 0.00 0.00 0.00 3.95
3884 4025 0.179043 TGCCTAGCACAAACCACGAA 60.179 50.000 0.00 0.00 31.71 3.85
3885 4026 0.602638 CTGCCTAGCACAAACCACGA 60.603 55.000 0.00 0.00 33.79 4.35
3886 4027 1.577328 CCTGCCTAGCACAAACCACG 61.577 60.000 0.00 0.00 33.79 4.94
3887 4028 1.866853 GCCTGCCTAGCACAAACCAC 61.867 60.000 0.00 0.00 33.79 4.16
3888 4029 1.603455 GCCTGCCTAGCACAAACCA 60.603 57.895 0.00 0.00 33.79 3.67
3889 4030 1.589716 CTGCCTGCCTAGCACAAACC 61.590 60.000 0.00 0.00 36.01 3.27
3890 4031 0.606401 TCTGCCTGCCTAGCACAAAC 60.606 55.000 0.00 0.00 36.01 2.93
3891 4032 0.321919 CTCTGCCTGCCTAGCACAAA 60.322 55.000 0.00 0.00 36.01 2.83
3918 4059 2.742053 CCATGGACCAACTCTAACAACG 59.258 50.000 5.56 0.00 0.00 4.10
3919 4060 2.488153 GCCATGGACCAACTCTAACAAC 59.512 50.000 18.40 0.00 0.00 3.32
3939 4080 2.490903 ACCACAAGCTCATGAAATCTGC 59.509 45.455 0.00 0.00 0.00 4.26
3976 4118 5.833340 AGATTACAGTCCCTACAGTCTTCT 58.167 41.667 0.00 0.00 0.00 2.85
3977 4119 5.889289 AGAGATTACAGTCCCTACAGTCTTC 59.111 44.000 0.00 0.00 0.00 2.87
3978 4120 5.833340 AGAGATTACAGTCCCTACAGTCTT 58.167 41.667 0.00 0.00 0.00 3.01
4019 4161 6.483307 TCGGTGCTACATATATATACCCGTAC 59.517 42.308 6.18 0.00 0.00 3.67
4023 4165 6.501781 GTGTCGGTGCTACATATATATACCC 58.498 44.000 6.18 0.00 0.00 3.69
4043 4185 3.810941 TCAAATTCAGGGTAACACGTGTC 59.189 43.478 23.61 10.46 39.74 3.67
4073 4215 3.857010 GCACAAAACCAAAGGAATCGGAG 60.857 47.826 0.00 0.00 0.00 4.63
4077 4219 4.320608 TGAGCACAAAACCAAAGGAATC 57.679 40.909 0.00 0.00 0.00 2.52
4141 4460 3.007182 TCTCTTCTGTGCACATGACATGA 59.993 43.478 22.00 10.19 0.00 3.07
4142 4461 3.332034 TCTCTTCTGTGCACATGACATG 58.668 45.455 22.00 14.02 0.00 3.21
4143 4462 3.690475 TCTCTTCTGTGCACATGACAT 57.310 42.857 22.00 0.00 0.00 3.06
4144 4463 3.473923 TTCTCTTCTGTGCACATGACA 57.526 42.857 22.00 4.36 0.00 3.58
4145 4464 3.750130 ACATTCTCTTCTGTGCACATGAC 59.250 43.478 22.00 0.00 0.00 3.06
4205 4757 3.469863 TTCCGTGCAAACCGCCTCT 62.470 57.895 0.00 0.00 41.33 3.69
4268 4864 2.417379 GGAGTGCTCGATACTTTCTGCA 60.417 50.000 4.25 0.00 31.88 4.41
4290 4886 2.332654 GCGGTTGGTTGCGAGGATT 61.333 57.895 0.00 0.00 0.00 3.01
4291 4887 2.746277 GCGGTTGGTTGCGAGGAT 60.746 61.111 0.00 0.00 0.00 3.24
4294 4890 2.458006 GAAAGGCGGTTGGTTGCGAG 62.458 60.000 0.00 0.00 0.00 5.03
4313 4919 2.466846 GGGCGATGAAGCATTGAATTG 58.533 47.619 0.00 0.00 39.27 2.32
4332 4938 1.627864 AGGAATTTCCACGTTTGGGG 58.372 50.000 17.57 0.00 44.11 4.96
4333 4939 3.418047 AGTAGGAATTTCCACGTTTGGG 58.582 45.455 17.57 0.00 44.11 4.12
4334 4940 5.935789 TCTTAGTAGGAATTTCCACGTTTGG 59.064 40.000 17.57 2.79 45.56 3.28
4335 4941 7.172703 AGTTCTTAGTAGGAATTTCCACGTTTG 59.827 37.037 17.57 4.12 39.61 2.93
4336 4942 7.222161 AGTTCTTAGTAGGAATTTCCACGTTT 58.778 34.615 17.57 0.00 39.61 3.60
4337 4943 6.766429 AGTTCTTAGTAGGAATTTCCACGTT 58.234 36.000 17.57 0.00 39.61 3.99
4338 4944 6.356186 AGTTCTTAGTAGGAATTTCCACGT 57.644 37.500 17.57 3.78 39.61 4.49
4340 4946 6.070136 AGGGAGTTCTTAGTAGGAATTTCCAC 60.070 42.308 17.57 12.62 39.61 4.02
4341 4947 6.030082 AGGGAGTTCTTAGTAGGAATTTCCA 58.970 40.000 17.57 1.22 39.61 3.53
4342 4948 6.408320 GGAGGGAGTTCTTAGTAGGAATTTCC 60.408 46.154 7.39 7.39 36.58 3.13
4343 4949 6.584488 GGAGGGAGTTCTTAGTAGGAATTTC 58.416 44.000 0.00 0.56 0.00 2.17
4344 4950 5.128991 CGGAGGGAGTTCTTAGTAGGAATTT 59.871 44.000 0.00 0.00 0.00 1.82
4345 4951 4.650131 CGGAGGGAGTTCTTAGTAGGAATT 59.350 45.833 0.00 0.00 0.00 2.17
4346 4952 4.216708 CGGAGGGAGTTCTTAGTAGGAAT 58.783 47.826 0.00 0.00 0.00 3.01
4347 4953 3.011032 ACGGAGGGAGTTCTTAGTAGGAA 59.989 47.826 0.00 0.00 0.00 3.36
4348 4954 2.579860 ACGGAGGGAGTTCTTAGTAGGA 59.420 50.000 0.00 0.00 0.00 2.94
4349 4955 3.015675 ACGGAGGGAGTTCTTAGTAGG 57.984 52.381 0.00 0.00 0.00 3.18
4350 4956 3.380954 GGAACGGAGGGAGTTCTTAGTAG 59.619 52.174 8.66 0.00 45.20 2.57
4351 4957 3.011032 AGGAACGGAGGGAGTTCTTAGTA 59.989 47.826 8.66 0.00 45.20 1.82
4352 4958 2.177734 GGAACGGAGGGAGTTCTTAGT 58.822 52.381 8.66 0.00 45.20 2.24
4353 4959 2.166664 CAGGAACGGAGGGAGTTCTTAG 59.833 54.545 8.66 0.00 45.20 2.18
4354 4960 2.176889 CAGGAACGGAGGGAGTTCTTA 58.823 52.381 8.66 0.00 45.20 2.10
4355 4961 0.977395 CAGGAACGGAGGGAGTTCTT 59.023 55.000 8.66 0.00 45.20 2.52
4356 4962 0.114560 TCAGGAACGGAGGGAGTTCT 59.885 55.000 8.66 0.00 45.20 3.01
4406 5012 4.668335 AGGGTCCTCCTCCTTTTCTAAAAA 59.332 41.667 0.00 0.00 44.06 1.94
4407 5013 4.248652 AGGGTCCTCCTCCTTTTCTAAAA 58.751 43.478 0.00 0.00 44.06 1.52
4408 5014 3.883135 AGGGTCCTCCTCCTTTTCTAAA 58.117 45.455 0.00 0.00 44.06 1.85
4409 5015 3.579742 AGGGTCCTCCTCCTTTTCTAA 57.420 47.619 0.00 0.00 44.06 2.10
4420 5026 1.694133 CCAGATGCAGAGGGTCCTCC 61.694 65.000 12.99 0.42 43.70 4.30
4421 5027 1.694133 CCCAGATGCAGAGGGTCCTC 61.694 65.000 8.91 8.91 43.03 3.71
4422 5028 1.692042 CCCAGATGCAGAGGGTCCT 60.692 63.158 11.69 0.00 37.81 3.85
4423 5029 2.914289 CCCAGATGCAGAGGGTCC 59.086 66.667 11.69 0.00 37.81 4.46
4424 5030 2.191641 GCCCAGATGCAGAGGGTC 59.808 66.667 18.81 9.94 44.69 4.46
4425 5031 3.790437 CGCCCAGATGCAGAGGGT 61.790 66.667 18.81 0.00 44.69 4.34
4426 5032 2.815945 ATCGCCCAGATGCAGAGGG 61.816 63.158 14.79 14.79 45.68 4.30
4427 5033 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
4434 5040 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
4435 5041 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
4436 5042 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
4437 5043 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
4438 5044 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
4439 5045 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
4440 5046 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
4441 5047 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
4442 5048 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
4443 5049 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
4444 5050 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
4445 5051 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
4447 5053 9.787435 TGAGAATAATTAATAAAGTGGCCGTAT 57.213 29.630 0.00 0.00 0.00 3.06
4448 5054 9.787435 ATGAGAATAATTAATAAAGTGGCCGTA 57.213 29.630 0.00 0.00 0.00 4.02
4449 5055 8.691661 ATGAGAATAATTAATAAAGTGGCCGT 57.308 30.769 0.00 0.00 0.00 5.68
4452 5058 9.760660 CGCTATGAGAATAATTAATAAAGTGGC 57.239 33.333 0.00 0.00 0.00 5.01
4544 5150 3.466791 ATCGATGGAAGGCGCTGGG 62.467 63.158 7.64 0.00 0.00 4.45
4545 5151 1.958205 GATCGATGGAAGGCGCTGG 60.958 63.158 7.64 0.00 0.00 4.85
4546 5152 1.068753 AGATCGATGGAAGGCGCTG 59.931 57.895 7.64 0.00 0.00 5.18
4547 5153 1.068753 CAGATCGATGGAAGGCGCT 59.931 57.895 7.64 0.00 0.00 5.92
4548 5154 1.958205 CCAGATCGATGGAAGGCGC 60.958 63.158 0.54 0.00 43.57 6.53
4549 5155 1.958205 GCCAGATCGATGGAAGGCG 60.958 63.158 9.29 0.00 43.57 5.52
4550 5156 1.599240 GGCCAGATCGATGGAAGGC 60.599 63.158 9.29 12.68 43.57 4.35
4551 5157 1.301244 CGGCCAGATCGATGGAAGG 60.301 63.158 9.29 3.73 43.57 3.46
4552 5158 0.598680 GACGGCCAGATCGATGGAAG 60.599 60.000 9.29 4.28 43.57 3.46
4553 5159 1.441729 GACGGCCAGATCGATGGAA 59.558 57.895 9.29 0.00 43.57 3.53
4554 5160 2.498941 GGACGGCCAGATCGATGGA 61.499 63.158 0.00 0.00 43.57 3.41
4555 5161 2.029666 GGACGGCCAGATCGATGG 59.970 66.667 0.00 0.44 43.72 3.51
4556 5162 1.300465 CAGGACGGCCAGATCGATG 60.300 63.158 11.69 0.00 36.29 3.84
4557 5163 1.758514 ACAGGACGGCCAGATCGAT 60.759 57.895 11.69 0.00 36.29 3.59
4558 5164 2.362503 ACAGGACGGCCAGATCGA 60.363 61.111 11.69 0.00 36.29 3.59
4559 5165 2.202797 CACAGGACGGCCAGATCG 60.203 66.667 11.69 0.00 36.29 3.69
4560 5166 2.512515 GCACAGGACGGCCAGATC 60.513 66.667 11.69 0.00 36.29 2.75
4573 5179 3.276091 CGTCGTTTGGCTGGCACA 61.276 61.111 2.29 0.00 0.00 4.57
4574 5180 2.443957 CTTCGTCGTTTGGCTGGCAC 62.444 60.000 2.29 0.00 0.00 5.01
4575 5181 2.203084 TTCGTCGTTTGGCTGGCA 60.203 55.556 0.00 0.00 0.00 4.92
4576 5182 2.556287 CTTCGTCGTTTGGCTGGC 59.444 61.111 0.00 0.00 0.00 4.85
4577 5183 2.325082 CCCTTCGTCGTTTGGCTGG 61.325 63.158 0.00 0.00 0.00 4.85
4578 5184 2.325082 CCCCTTCGTCGTTTGGCTG 61.325 63.158 0.00 0.00 0.00 4.85
4579 5185 2.032071 CCCCTTCGTCGTTTGGCT 59.968 61.111 0.00 0.00 0.00 4.75
4580 5186 2.031465 TCCCCTTCGTCGTTTGGC 59.969 61.111 0.00 0.00 0.00 4.52
4581 5187 0.389948 CTCTCCCCTTCGTCGTTTGG 60.390 60.000 0.00 0.00 0.00 3.28
4582 5188 0.389948 CCTCTCCCCTTCGTCGTTTG 60.390 60.000 0.00 0.00 0.00 2.93
4583 5189 1.972978 CCTCTCCCCTTCGTCGTTT 59.027 57.895 0.00 0.00 0.00 3.60
4584 5190 2.647158 GCCTCTCCCCTTCGTCGTT 61.647 63.158 0.00 0.00 0.00 3.85
4585 5191 3.069318 GCCTCTCCCCTTCGTCGT 61.069 66.667 0.00 0.00 0.00 4.34
4586 5192 4.194720 CGCCTCTCCCCTTCGTCG 62.195 72.222 0.00 0.00 0.00 5.12
4587 5193 3.066233 GACGCCTCTCCCCTTCGTC 62.066 68.421 0.00 0.00 41.80 4.20
4588 5194 3.069318 GACGCCTCTCCCCTTCGT 61.069 66.667 0.00 0.00 35.98 3.85
4589 5195 3.839432 GGACGCCTCTCCCCTTCG 61.839 72.222 0.00 0.00 0.00 3.79
4590 5196 2.683933 TGGACGCCTCTCCCCTTC 60.684 66.667 0.00 0.00 0.00 3.46
4591 5197 2.685380 CTGGACGCCTCTCCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
4615 5221 4.290622 AAGCCTGCCTGGTGTGGG 62.291 66.667 0.00 0.00 38.35 4.61
4616 5222 2.674380 GAAGCCTGCCTGGTGTGG 60.674 66.667 0.00 0.00 38.35 4.17
4617 5223 3.052082 CGAAGCCTGCCTGGTGTG 61.052 66.667 0.00 0.00 38.35 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.