Multiple sequence alignment - TraesCS1B01G315400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G315400 chr1B 100.000 3145 0 0 1 3145 539850489 539847345 0 5808
1 TraesCS1B01G315400 chr3B 95.365 2632 86 7 548 3145 726424352 726426981 0 4152
2 TraesCS1B01G315400 chr3B 96.796 1748 46 4 547 2286 13529175 13530920 0 2909
3 TraesCS1B01G315400 chr3B 96.613 1742 47 5 547 2286 13510172 13511903 0 2880
4 TraesCS1B01G315400 chr3B 95.956 1632 29 7 1528 3144 521412783 521411174 0 2614
5 TraesCS1B01G315400 chr3B 91.837 882 36 11 2282 3145 13545487 13546350 0 1197
6 TraesCS1B01G315400 chr3B 91.114 889 27 9 2282 3145 13517463 13518324 0 1157
7 TraesCS1B01G315400 chr3B 92.899 690 35 5 544 1225 575259571 575260254 0 990
8 TraesCS1B01G315400 chr7D 91.879 2635 138 22 549 3145 525733739 525736335 0 3611
9 TraesCS1B01G315400 chr1D 90.913 2652 153 26 547 3145 42897257 42894641 0 3482
10 TraesCS1B01G315400 chr1D 90.170 2299 133 31 887 3145 7180831 7183076 0 2907
11 TraesCS1B01G315400 chr1D 84.788 1111 90 31 2090 3145 392708462 392707376 0 1042
12 TraesCS1B01G315400 chr5A 90.286 2656 154 27 542 3145 634624164 634626767 0 3380
13 TraesCS1B01G315400 chr5A 87.500 808 45 10 2377 3145 552242117 552241327 0 881
14 TraesCS1B01G315400 chr1A 90.248 2666 143 27 544 3145 572001400 571998788 0 3374
15 TraesCS1B01G315400 chr6A 89.985 2656 157 28 548 3145 116690038 116692642 0 3330
16 TraesCS1B01G315400 chr4D 89.932 2632 168 41 548 3145 108842224 108844792 0 3302
17 TraesCS1B01G315400 chr4D 90.818 2407 133 48 763 3145 488848778 488851120 0 3140
18 TraesCS1B01G315400 chr2A 90.153 2356 144 26 549 2876 38507331 38505036 0 2985
19 TraesCS1B01G315400 chr2A 96.081 1633 27 8 1528 3145 704019426 704017816 0 2627
20 TraesCS1B01G315400 chr5B 90.865 2255 121 18 943 3145 418362129 418359908 0 2944
21 TraesCS1B01G315400 chr4A 87.057 2627 219 42 548 3145 85532114 85529580 0 2856
22 TraesCS1B01G315400 chr5D 89.711 2284 136 37 887 3145 449488170 449490379 0 2824
23 TraesCS1B01G315400 chr5D 92.894 1956 94 18 541 2476 388593166 388595096 0 2800
24 TraesCS1B01G315400 chr3A 91.035 2097 124 25 548 2624 22779068 22777016 0 2772
25 TraesCS1B01G315400 chr2B 92.562 1842 102 12 548 2378 80552660 80550843 0 2610
26 TraesCS1B01G315400 chr6B 86.990 2106 207 22 1068 3145 417302256 417304322 0 2309
27 TraesCS1B01G315400 chr6D 88.688 1821 134 19 1360 3145 45727752 45729535 0 2156
28 TraesCS1B01G315400 chr6D 91.657 827 47 9 547 1365 45675921 45676733 0 1125


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G315400 chr1B 539847345 539850489 3144 True 5808 5808 100.000 1 3145 1 chr1B.!!$R1 3144
1 TraesCS1B01G315400 chr3B 726424352 726426981 2629 False 4152 4152 95.365 548 3145 1 chr3B.!!$F6 2597
2 TraesCS1B01G315400 chr3B 13529175 13530920 1745 False 2909 2909 96.796 547 2286 1 chr3B.!!$F3 1739
3 TraesCS1B01G315400 chr3B 13510172 13511903 1731 False 2880 2880 96.613 547 2286 1 chr3B.!!$F1 1739
4 TraesCS1B01G315400 chr3B 521411174 521412783 1609 True 2614 2614 95.956 1528 3144 1 chr3B.!!$R1 1616
5 TraesCS1B01G315400 chr3B 13545487 13546350 863 False 1197 1197 91.837 2282 3145 1 chr3B.!!$F4 863
6 TraesCS1B01G315400 chr3B 13517463 13518324 861 False 1157 1157 91.114 2282 3145 1 chr3B.!!$F2 863
7 TraesCS1B01G315400 chr3B 575259571 575260254 683 False 990 990 92.899 544 1225 1 chr3B.!!$F5 681
8 TraesCS1B01G315400 chr7D 525733739 525736335 2596 False 3611 3611 91.879 549 3145 1 chr7D.!!$F1 2596
9 TraesCS1B01G315400 chr1D 42894641 42897257 2616 True 3482 3482 90.913 547 3145 1 chr1D.!!$R1 2598
10 TraesCS1B01G315400 chr1D 7180831 7183076 2245 False 2907 2907 90.170 887 3145 1 chr1D.!!$F1 2258
11 TraesCS1B01G315400 chr1D 392707376 392708462 1086 True 1042 1042 84.788 2090 3145 1 chr1D.!!$R2 1055
12 TraesCS1B01G315400 chr5A 634624164 634626767 2603 False 3380 3380 90.286 542 3145 1 chr5A.!!$F1 2603
13 TraesCS1B01G315400 chr5A 552241327 552242117 790 True 881 881 87.500 2377 3145 1 chr5A.!!$R1 768
14 TraesCS1B01G315400 chr1A 571998788 572001400 2612 True 3374 3374 90.248 544 3145 1 chr1A.!!$R1 2601
15 TraesCS1B01G315400 chr6A 116690038 116692642 2604 False 3330 3330 89.985 548 3145 1 chr6A.!!$F1 2597
16 TraesCS1B01G315400 chr4D 108842224 108844792 2568 False 3302 3302 89.932 548 3145 1 chr4D.!!$F1 2597
17 TraesCS1B01G315400 chr4D 488848778 488851120 2342 False 3140 3140 90.818 763 3145 1 chr4D.!!$F2 2382
18 TraesCS1B01G315400 chr2A 38505036 38507331 2295 True 2985 2985 90.153 549 2876 1 chr2A.!!$R1 2327
19 TraesCS1B01G315400 chr2A 704017816 704019426 1610 True 2627 2627 96.081 1528 3145 1 chr2A.!!$R2 1617
20 TraesCS1B01G315400 chr5B 418359908 418362129 2221 True 2944 2944 90.865 943 3145 1 chr5B.!!$R1 2202
21 TraesCS1B01G315400 chr4A 85529580 85532114 2534 True 2856 2856 87.057 548 3145 1 chr4A.!!$R1 2597
22 TraesCS1B01G315400 chr5D 449488170 449490379 2209 False 2824 2824 89.711 887 3145 1 chr5D.!!$F2 2258
23 TraesCS1B01G315400 chr5D 388593166 388595096 1930 False 2800 2800 92.894 541 2476 1 chr5D.!!$F1 1935
24 TraesCS1B01G315400 chr3A 22777016 22779068 2052 True 2772 2772 91.035 548 2624 1 chr3A.!!$R1 2076
25 TraesCS1B01G315400 chr2B 80550843 80552660 1817 True 2610 2610 92.562 548 2378 1 chr2B.!!$R1 1830
26 TraesCS1B01G315400 chr6B 417302256 417304322 2066 False 2309 2309 86.990 1068 3145 1 chr6B.!!$F1 2077
27 TraesCS1B01G315400 chr6D 45727752 45729535 1783 False 2156 2156 88.688 1360 3145 1 chr6D.!!$F2 1785
28 TraesCS1B01G315400 chr6D 45675921 45676733 812 False 1125 1125 91.657 547 1365 1 chr6D.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.036577 CTGTGAAGGCTGCTGCTACT 60.037 55.0 15.64 1.96 39.59 2.57 F
886 899 0.036858 GCCCTCACTCACTCTGTTCC 60.037 60.0 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 1991 4.834496 TCCATTTGAACCTCAATCTTTGCT 59.166 37.500 0.0 0.0 36.11 3.91 R
2724 2936 3.733337 ACAAAGATGACGAAGAACAGCT 58.267 40.909 0.0 0.0 36.11 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.413309 CTGTCCCAAGTGAGATAAACTCT 57.587 43.478 0.00 0.00 45.13 3.24
23 24 5.152623 TGTCCCAAGTGAGATAAACTCTG 57.847 43.478 0.00 0.00 45.13 3.35
24 25 3.935828 GTCCCAAGTGAGATAAACTCTGC 59.064 47.826 0.00 0.00 45.13 4.26
25 26 3.055094 TCCCAAGTGAGATAAACTCTGCC 60.055 47.826 0.00 0.00 45.13 4.85
26 27 3.274288 CCAAGTGAGATAAACTCTGCCC 58.726 50.000 0.00 0.00 45.13 5.36
27 28 3.307691 CCAAGTGAGATAAACTCTGCCCA 60.308 47.826 0.00 0.00 45.13 5.36
28 29 4.521146 CAAGTGAGATAAACTCTGCCCAT 58.479 43.478 0.00 0.00 45.13 4.00
29 30 4.851639 AGTGAGATAAACTCTGCCCATT 57.148 40.909 0.00 0.00 45.13 3.16
30 31 4.521146 AGTGAGATAAACTCTGCCCATTG 58.479 43.478 0.00 0.00 45.13 2.82
31 32 3.065925 GTGAGATAAACTCTGCCCATTGC 59.934 47.826 0.00 0.00 45.13 3.56
32 33 2.289002 GAGATAAACTCTGCCCATTGCG 59.711 50.000 0.00 0.00 41.94 4.85
33 34 0.740737 ATAAACTCTGCCCATTGCGC 59.259 50.000 0.00 0.00 45.60 6.09
34 35 0.607762 TAAACTCTGCCCATTGCGCA 60.608 50.000 5.66 5.66 45.60 6.09
35 36 1.462731 AAACTCTGCCCATTGCGCAA 61.463 50.000 27.24 27.24 45.60 4.85
36 37 1.252904 AACTCTGCCCATTGCGCAAT 61.253 50.000 29.36 29.36 45.60 3.56
37 38 1.065273 CTCTGCCCATTGCGCAATC 59.935 57.895 31.88 21.13 45.60 2.67
38 39 2.278336 CTGCCCATTGCGCAATCG 60.278 61.111 31.88 25.36 45.60 3.34
39 40 3.761445 CTGCCCATTGCGCAATCGG 62.761 63.158 34.18 34.18 45.60 4.18
40 41 3.517140 GCCCATTGCGCAATCGGA 61.517 61.111 39.91 15.97 31.75 4.55
41 42 2.717485 CCCATTGCGCAATCGGAG 59.283 61.111 34.90 22.61 37.35 4.63
42 43 1.819208 CCCATTGCGCAATCGGAGA 60.819 57.895 34.90 9.67 45.75 3.71
43 44 1.645455 CCATTGCGCAATCGGAGAG 59.355 57.895 31.88 19.16 43.63 3.20
44 45 1.010350 CATTGCGCAATCGGAGAGC 60.010 57.895 31.88 0.00 43.63 4.09
45 46 1.153289 ATTGCGCAATCGGAGAGCT 60.153 52.632 29.36 5.46 43.63 4.09
46 47 1.156645 ATTGCGCAATCGGAGAGCTC 61.157 55.000 29.36 5.27 43.63 4.09
47 48 2.964389 GCGCAATCGGAGAGCTCC 60.964 66.667 10.93 6.46 43.63 4.70
56 57 4.434685 GAGAGCTCCAAGATGGCG 57.565 61.111 10.93 0.00 37.47 5.69
57 58 1.819229 GAGAGCTCCAAGATGGCGA 59.181 57.895 10.93 0.00 37.47 5.54
58 59 0.249405 GAGAGCTCCAAGATGGCGAG 60.249 60.000 10.93 0.00 37.47 5.03
59 60 1.227497 GAGCTCCAAGATGGCGAGG 60.227 63.158 0.87 0.00 37.47 4.63
60 61 2.203126 GCTCCAAGATGGCGAGGG 60.203 66.667 0.00 0.00 37.47 4.30
61 62 2.203126 CTCCAAGATGGCGAGGGC 60.203 66.667 0.00 0.00 37.47 5.19
62 63 2.688666 TCCAAGATGGCGAGGGCT 60.689 61.111 0.00 0.00 37.47 5.19
63 64 2.515523 CCAAGATGGCGAGGGCTG 60.516 66.667 0.00 0.00 39.81 4.85
64 65 3.207669 CAAGATGGCGAGGGCTGC 61.208 66.667 0.00 0.00 39.81 5.25
73 74 4.008933 GAGGGCTGCCTCGTGTGT 62.009 66.667 19.68 0.00 0.00 3.72
74 75 3.941657 GAGGGCTGCCTCGTGTGTC 62.942 68.421 19.68 0.00 0.00 3.67
75 76 4.008933 GGGCTGCCTCGTGTGTCT 62.009 66.667 19.68 0.00 0.00 3.41
76 77 2.433318 GGCTGCCTCGTGTGTCTC 60.433 66.667 12.43 0.00 0.00 3.36
77 78 2.433318 GCTGCCTCGTGTGTCTCC 60.433 66.667 0.00 0.00 0.00 3.71
78 79 3.051210 CTGCCTCGTGTGTCTCCA 58.949 61.111 0.00 0.00 0.00 3.86
79 80 1.367471 CTGCCTCGTGTGTCTCCAA 59.633 57.895 0.00 0.00 0.00 3.53
80 81 0.668706 CTGCCTCGTGTGTCTCCAAG 60.669 60.000 0.00 0.00 0.00 3.61
81 82 1.374758 GCCTCGTGTGTCTCCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
82 83 1.374758 CCTCGTGTGTCTCCAAGGC 60.375 63.158 0.00 0.00 0.00 4.35
83 84 1.374758 CTCGTGTGTCTCCAAGGCC 60.375 63.158 0.00 0.00 0.00 5.19
84 85 2.738521 CGTGTGTCTCCAAGGCCG 60.739 66.667 0.00 0.00 0.00 6.13
85 86 3.050275 GTGTGTCTCCAAGGCCGC 61.050 66.667 0.00 0.00 0.00 6.53
86 87 4.680237 TGTGTCTCCAAGGCCGCG 62.680 66.667 0.00 0.00 0.00 6.46
94 95 3.055719 CAAGGCCGCGGTGTGAAT 61.056 61.111 28.70 4.52 0.00 2.57
95 96 3.055719 AAGGCCGCGGTGTGAATG 61.056 61.111 28.70 0.00 0.00 2.67
96 97 3.842925 AAGGCCGCGGTGTGAATGT 62.843 57.895 28.70 0.44 0.00 2.71
97 98 3.799755 GGCCGCGGTGTGAATGTC 61.800 66.667 28.70 5.99 0.00 3.06
98 99 3.799755 GCCGCGGTGTGAATGTCC 61.800 66.667 28.70 0.93 0.00 4.02
99 100 3.487202 CCGCGGTGTGAATGTCCG 61.487 66.667 19.50 0.00 45.94 4.79
102 103 2.047274 CGGTGTGAATGTCCGCCT 60.047 61.111 0.00 0.00 37.90 5.52
103 104 2.390599 CGGTGTGAATGTCCGCCTG 61.391 63.158 0.00 0.00 37.90 4.85
104 105 2.040544 GGTGTGAATGTCCGCCTGG 61.041 63.158 0.00 0.00 0.00 4.45
105 106 1.003839 GTGTGAATGTCCGCCTGGA 60.004 57.895 0.00 0.00 43.88 3.86
113 114 3.003173 TCCGCCTGGAAGTCTGGG 61.003 66.667 0.00 0.00 42.85 4.45
114 115 3.322466 CCGCCTGGAAGTCTGGGT 61.322 66.667 0.00 0.00 37.49 4.51
115 116 2.046892 CGCCTGGAAGTCTGGGTG 60.047 66.667 0.00 0.00 35.30 4.61
116 117 2.360475 GCCTGGAAGTCTGGGTGC 60.360 66.667 0.00 0.00 35.30 5.01
117 118 2.900106 GCCTGGAAGTCTGGGTGCT 61.900 63.158 0.00 0.00 35.30 4.40
118 119 1.002868 CCTGGAAGTCTGGGTGCTG 60.003 63.158 0.00 0.00 0.00 4.41
119 120 1.002868 CTGGAAGTCTGGGTGCTGG 60.003 63.158 0.00 0.00 0.00 4.85
120 121 1.461268 TGGAAGTCTGGGTGCTGGA 60.461 57.895 0.00 0.00 0.00 3.86
121 122 1.298014 GGAAGTCTGGGTGCTGGAG 59.702 63.158 0.00 0.00 0.00 3.86
122 123 1.298014 GAAGTCTGGGTGCTGGAGG 59.702 63.158 0.00 0.00 0.00 4.30
123 124 1.152030 AAGTCTGGGTGCTGGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
124 125 1.197430 AAGTCTGGGTGCTGGAGGAG 61.197 60.000 0.00 0.00 0.00 3.69
125 126 2.284921 TCTGGGTGCTGGAGGAGG 60.285 66.667 0.00 0.00 0.00 4.30
126 127 2.284921 CTGGGTGCTGGAGGAGGA 60.285 66.667 0.00 0.00 0.00 3.71
127 128 2.284921 TGGGTGCTGGAGGAGGAG 60.285 66.667 0.00 0.00 0.00 3.69
128 129 3.086600 GGGTGCTGGAGGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
129 130 2.039624 GGTGCTGGAGGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
130 131 2.063378 GGTGCTGGAGGAGGAGGAG 61.063 68.421 0.00 0.00 0.00 3.69
131 132 2.063378 GTGCTGGAGGAGGAGGAGG 61.063 68.421 0.00 0.00 0.00 4.30
132 133 3.160748 GCTGGAGGAGGAGGAGGC 61.161 72.222 0.00 0.00 0.00 4.70
133 134 2.837291 CTGGAGGAGGAGGAGGCG 60.837 72.222 0.00 0.00 0.00 5.52
134 135 3.347590 TGGAGGAGGAGGAGGCGA 61.348 66.667 0.00 0.00 0.00 5.54
135 136 2.042843 GGAGGAGGAGGAGGCGAA 60.043 66.667 0.00 0.00 0.00 4.70
136 137 2.428085 GGAGGAGGAGGAGGCGAAC 61.428 68.421 0.00 0.00 0.00 3.95
137 138 1.682684 GAGGAGGAGGAGGCGAACA 60.683 63.158 0.00 0.00 0.00 3.18
138 139 1.002274 AGGAGGAGGAGGCGAACAT 59.998 57.895 0.00 0.00 0.00 2.71
139 140 0.261991 AGGAGGAGGAGGCGAACATA 59.738 55.000 0.00 0.00 0.00 2.29
140 141 1.133009 AGGAGGAGGAGGCGAACATAT 60.133 52.381 0.00 0.00 0.00 1.78
141 142 1.001406 GGAGGAGGAGGCGAACATATG 59.999 57.143 0.00 0.00 0.00 1.78
142 143 1.689273 GAGGAGGAGGCGAACATATGT 59.311 52.381 1.41 1.41 0.00 2.29
143 144 2.103263 GAGGAGGAGGCGAACATATGTT 59.897 50.000 20.93 20.93 41.64 2.71
144 145 2.158900 AGGAGGAGGCGAACATATGTTG 60.159 50.000 25.42 17.19 38.56 3.33
145 146 2.213499 GAGGAGGCGAACATATGTTGG 58.787 52.381 25.42 23.63 38.56 3.77
146 147 1.837439 AGGAGGCGAACATATGTTGGA 59.163 47.619 28.41 0.00 38.56 3.53
147 148 2.439507 AGGAGGCGAACATATGTTGGAT 59.560 45.455 28.41 18.01 38.56 3.41
148 149 3.117888 AGGAGGCGAACATATGTTGGATT 60.118 43.478 28.41 17.34 38.56 3.01
149 150 3.251004 GGAGGCGAACATATGTTGGATTC 59.749 47.826 28.41 22.59 38.56 2.52
150 151 4.130118 GAGGCGAACATATGTTGGATTCT 58.870 43.478 28.41 21.27 38.56 2.40
151 152 3.879295 AGGCGAACATATGTTGGATTCTG 59.121 43.478 28.41 11.49 38.56 3.02
152 153 3.876914 GGCGAACATATGTTGGATTCTGA 59.123 43.478 28.41 0.00 38.56 3.27
153 154 4.335315 GGCGAACATATGTTGGATTCTGAA 59.665 41.667 28.41 0.00 38.56 3.02
154 155 5.163663 GGCGAACATATGTTGGATTCTGAAA 60.164 40.000 28.41 0.00 38.56 2.69
155 156 5.739161 GCGAACATATGTTGGATTCTGAAAC 59.261 40.000 28.41 9.41 38.56 2.78
156 157 6.622679 GCGAACATATGTTGGATTCTGAAACA 60.623 38.462 28.41 0.00 38.56 2.83
157 158 6.963242 CGAACATATGTTGGATTCTGAAACAG 59.037 38.462 25.42 0.00 38.56 3.16
158 159 7.148423 CGAACATATGTTGGATTCTGAAACAGA 60.148 37.037 25.42 0.00 38.56 3.41
159 160 8.408043 AACATATGTTGGATTCTGAAACAGAA 57.592 30.769 20.19 14.94 44.06 3.02
160 161 8.299570 AACATATGTTGGATTCTGAAACAGAAC 58.700 33.333 20.19 9.73 43.44 3.01
167 168 2.814280 TCTGAAACAGAACGTCCTCC 57.186 50.000 0.00 0.00 37.57 4.30
168 169 2.317040 TCTGAAACAGAACGTCCTCCT 58.683 47.619 0.00 0.00 37.57 3.69
169 170 2.035961 TCTGAAACAGAACGTCCTCCTG 59.964 50.000 0.00 0.00 37.57 3.86
170 171 2.035961 CTGAAACAGAACGTCCTCCTGA 59.964 50.000 12.18 0.00 32.44 3.86
171 172 2.035961 TGAAACAGAACGTCCTCCTGAG 59.964 50.000 12.18 0.00 0.00 3.35
172 173 6.871603 CTGAAACAGAACGTCCTCCTGAGG 62.872 54.167 6.88 6.88 40.94 3.86
182 183 2.835580 CCTCCTGAGGCAGATATGTG 57.164 55.000 0.00 0.00 42.44 3.21
183 184 2.323599 CCTCCTGAGGCAGATATGTGA 58.676 52.381 3.61 0.00 42.44 3.58
184 185 2.702478 CCTCCTGAGGCAGATATGTGAA 59.298 50.000 3.61 0.00 42.44 3.18
185 186 3.135348 CCTCCTGAGGCAGATATGTGAAA 59.865 47.826 3.61 0.00 42.44 2.69
186 187 4.384537 CCTCCTGAGGCAGATATGTGAAAA 60.385 45.833 3.61 0.00 42.44 2.29
187 188 4.774124 TCCTGAGGCAGATATGTGAAAAG 58.226 43.478 3.61 0.00 32.44 2.27
188 189 4.225942 TCCTGAGGCAGATATGTGAAAAGT 59.774 41.667 3.61 0.00 32.44 2.66
189 190 4.574013 CCTGAGGCAGATATGTGAAAAGTC 59.426 45.833 3.61 0.00 32.44 3.01
190 191 4.517285 TGAGGCAGATATGTGAAAAGTCC 58.483 43.478 3.61 0.00 0.00 3.85
191 192 3.879892 GAGGCAGATATGTGAAAAGTCCC 59.120 47.826 3.61 0.00 0.00 4.46
192 193 2.614057 GGCAGATATGTGAAAAGTCCCG 59.386 50.000 3.61 0.00 0.00 5.14
193 194 2.614057 GCAGATATGTGAAAAGTCCCGG 59.386 50.000 3.61 0.00 0.00 5.73
194 195 3.206150 CAGATATGTGAAAAGTCCCGGG 58.794 50.000 16.85 16.85 0.00 5.73
195 196 2.844348 AGATATGTGAAAAGTCCCGGGT 59.156 45.455 22.86 0.00 0.00 5.28
196 197 2.483014 TATGTGAAAAGTCCCGGGTG 57.517 50.000 22.86 0.00 0.00 4.61
197 198 0.476771 ATGTGAAAAGTCCCGGGTGT 59.523 50.000 22.86 5.85 0.00 4.16
198 199 0.464735 TGTGAAAAGTCCCGGGTGTG 60.465 55.000 22.86 0.00 0.00 3.82
199 200 1.527380 TGAAAAGTCCCGGGTGTGC 60.527 57.895 22.86 9.65 0.00 4.57
200 201 2.203437 AAAAGTCCCGGGTGTGCC 60.203 61.111 22.86 4.55 0.00 5.01
201 202 2.969300 GAAAAGTCCCGGGTGTGCCA 62.969 60.000 22.86 0.00 36.17 4.92
202 203 2.366153 AAAAGTCCCGGGTGTGCCAT 62.366 55.000 22.86 0.00 36.17 4.40
203 204 3.567579 AAGTCCCGGGTGTGCCATG 62.568 63.158 22.86 0.00 36.17 3.66
204 205 4.344865 GTCCCGGGTGTGCCATGT 62.345 66.667 22.86 0.00 36.17 3.21
205 206 4.028490 TCCCGGGTGTGCCATGTC 62.028 66.667 22.86 0.00 36.17 3.06
207 208 4.386951 CCGGGTGTGCCATGTCGA 62.387 66.667 0.00 0.00 36.17 4.20
208 209 2.125147 CGGGTGTGCCATGTCGAT 60.125 61.111 0.00 0.00 36.17 3.59
209 210 1.142965 CGGGTGTGCCATGTCGATA 59.857 57.895 0.00 0.00 36.17 2.92
210 211 0.461163 CGGGTGTGCCATGTCGATAA 60.461 55.000 0.00 0.00 36.17 1.75
211 212 1.299541 GGGTGTGCCATGTCGATAAG 58.700 55.000 0.00 0.00 36.17 1.73
212 213 1.299541 GGTGTGCCATGTCGATAAGG 58.700 55.000 0.00 0.00 34.09 2.69
213 214 1.406887 GGTGTGCCATGTCGATAAGGT 60.407 52.381 5.31 0.00 34.09 3.50
214 215 2.356135 GTGTGCCATGTCGATAAGGTT 58.644 47.619 5.31 0.00 0.00 3.50
215 216 3.527533 GTGTGCCATGTCGATAAGGTTA 58.472 45.455 5.31 0.00 0.00 2.85
216 217 3.308866 GTGTGCCATGTCGATAAGGTTAC 59.691 47.826 5.31 5.83 0.00 2.50
217 218 2.870411 GTGCCATGTCGATAAGGTTACC 59.130 50.000 5.31 0.00 0.00 2.85
218 219 2.502130 TGCCATGTCGATAAGGTTACCA 59.498 45.455 3.51 0.00 0.00 3.25
219 220 3.055021 TGCCATGTCGATAAGGTTACCAA 60.055 43.478 3.51 0.00 0.00 3.67
220 221 3.311596 GCCATGTCGATAAGGTTACCAAC 59.688 47.826 3.51 0.00 0.00 3.77
221 222 3.554324 CCATGTCGATAAGGTTACCAACG 59.446 47.826 3.51 3.83 0.00 4.10
222 223 3.235157 TGTCGATAAGGTTACCAACGG 57.765 47.619 3.51 0.00 0.00 4.44
223 224 2.824936 TGTCGATAAGGTTACCAACGGA 59.175 45.455 3.51 0.00 0.00 4.69
224 225 3.182182 GTCGATAAGGTTACCAACGGAC 58.818 50.000 3.51 0.69 0.00 4.79
225 226 3.091545 TCGATAAGGTTACCAACGGACT 58.908 45.455 3.51 0.00 0.00 3.85
226 227 4.096382 GTCGATAAGGTTACCAACGGACTA 59.904 45.833 3.51 0.00 0.00 2.59
227 228 4.336433 TCGATAAGGTTACCAACGGACTAG 59.664 45.833 3.51 0.00 0.00 2.57
228 229 2.756840 AAGGTTACCAACGGACTAGC 57.243 50.000 3.51 0.00 0.00 3.42
229 230 1.636148 AGGTTACCAACGGACTAGCA 58.364 50.000 3.51 0.00 0.00 3.49
230 231 1.972795 AGGTTACCAACGGACTAGCAA 59.027 47.619 3.51 0.00 0.00 3.91
231 232 2.570302 AGGTTACCAACGGACTAGCAAT 59.430 45.455 3.51 0.00 0.00 3.56
232 233 2.676342 GGTTACCAACGGACTAGCAATG 59.324 50.000 0.00 0.00 0.00 2.82
233 234 3.592059 GTTACCAACGGACTAGCAATGA 58.408 45.455 0.00 0.00 0.00 2.57
234 235 4.189231 GTTACCAACGGACTAGCAATGAT 58.811 43.478 0.00 0.00 0.00 2.45
235 236 3.350219 ACCAACGGACTAGCAATGATT 57.650 42.857 0.00 0.00 0.00 2.57
236 237 4.481368 ACCAACGGACTAGCAATGATTA 57.519 40.909 0.00 0.00 0.00 1.75
237 238 4.442706 ACCAACGGACTAGCAATGATTAG 58.557 43.478 0.00 0.00 0.00 1.73
238 239 3.248602 CCAACGGACTAGCAATGATTAGC 59.751 47.826 0.00 0.00 0.00 3.09
239 240 2.743938 ACGGACTAGCAATGATTAGCG 58.256 47.619 0.00 0.00 35.48 4.26
240 241 2.061773 CGGACTAGCAATGATTAGCGG 58.938 52.381 0.00 0.00 35.48 5.52
241 242 1.801178 GGACTAGCAATGATTAGCGGC 59.199 52.381 0.00 0.00 35.48 6.53
242 243 2.548920 GGACTAGCAATGATTAGCGGCT 60.549 50.000 7.98 7.98 38.55 5.52
243 244 3.306088 GGACTAGCAATGATTAGCGGCTA 60.306 47.826 5.42 5.42 36.10 3.93
244 245 3.654414 ACTAGCAATGATTAGCGGCTAC 58.346 45.455 9.68 0.00 36.10 3.58
245 246 1.502231 AGCAATGATTAGCGGCTACG 58.498 50.000 9.68 0.00 44.63 3.51
246 247 1.068588 AGCAATGATTAGCGGCTACGA 59.931 47.619 9.68 0.00 44.60 3.43
247 248 2.069273 GCAATGATTAGCGGCTACGAT 58.931 47.619 9.68 1.12 44.60 3.73
248 249 2.159787 GCAATGATTAGCGGCTACGATG 60.160 50.000 9.68 6.21 44.60 3.84
249 250 3.059884 CAATGATTAGCGGCTACGATGT 58.940 45.455 9.68 0.00 44.60 3.06
250 251 2.417339 TGATTAGCGGCTACGATGTC 57.583 50.000 9.68 4.26 44.60 3.06
251 252 1.954382 TGATTAGCGGCTACGATGTCT 59.046 47.619 9.68 0.00 44.60 3.41
252 253 2.031069 TGATTAGCGGCTACGATGTCTC 60.031 50.000 9.68 0.00 44.60 3.36
253 254 0.666913 TTAGCGGCTACGATGTCTCC 59.333 55.000 9.68 0.00 44.60 3.71
254 255 0.179026 TAGCGGCTACGATGTCTCCT 60.179 55.000 5.42 0.00 44.60 3.69
255 256 0.179026 AGCGGCTACGATGTCTCCTA 60.179 55.000 0.00 0.00 44.60 2.94
256 257 0.882474 GCGGCTACGATGTCTCCTAT 59.118 55.000 0.00 0.00 44.60 2.57
257 258 1.401670 GCGGCTACGATGTCTCCTATG 60.402 57.143 0.00 0.00 44.60 2.23
258 259 1.401670 CGGCTACGATGTCTCCTATGC 60.402 57.143 0.00 0.00 44.60 3.14
259 260 1.401670 GGCTACGATGTCTCCTATGCG 60.402 57.143 0.00 0.00 0.00 4.73
260 261 1.535896 GCTACGATGTCTCCTATGCGA 59.464 52.381 0.00 0.00 0.00 5.10
261 262 2.162608 GCTACGATGTCTCCTATGCGAT 59.837 50.000 0.00 0.00 0.00 4.58
262 263 3.366476 GCTACGATGTCTCCTATGCGATT 60.366 47.826 0.00 0.00 0.00 3.34
263 264 3.018598 ACGATGTCTCCTATGCGATTG 57.981 47.619 0.00 0.00 0.00 2.67
264 265 2.623416 ACGATGTCTCCTATGCGATTGA 59.377 45.455 0.00 0.00 0.00 2.57
265 266 3.256879 ACGATGTCTCCTATGCGATTGAT 59.743 43.478 0.00 0.00 0.00 2.57
266 267 4.459337 ACGATGTCTCCTATGCGATTGATA 59.541 41.667 0.00 0.00 0.00 2.15
267 268 5.126222 ACGATGTCTCCTATGCGATTGATAT 59.874 40.000 0.00 0.00 0.00 1.63
268 269 6.038985 CGATGTCTCCTATGCGATTGATATT 58.961 40.000 0.00 0.00 0.00 1.28
269 270 6.198029 CGATGTCTCCTATGCGATTGATATTC 59.802 42.308 0.00 0.00 0.00 1.75
270 271 6.345096 TGTCTCCTATGCGATTGATATTCA 57.655 37.500 0.00 0.00 0.00 2.57
271 272 6.393171 TGTCTCCTATGCGATTGATATTCAG 58.607 40.000 0.00 0.00 0.00 3.02
272 273 6.209391 TGTCTCCTATGCGATTGATATTCAGA 59.791 38.462 0.00 0.00 0.00 3.27
273 274 6.751425 GTCTCCTATGCGATTGATATTCAGAG 59.249 42.308 0.00 0.00 0.00 3.35
274 275 5.414360 TCCTATGCGATTGATATTCAGAGC 58.586 41.667 0.00 0.00 0.00 4.09
275 276 5.047092 TCCTATGCGATTGATATTCAGAGCA 60.047 40.000 0.00 6.24 36.72 4.26
276 277 5.816258 CCTATGCGATTGATATTCAGAGCAT 59.184 40.000 15.38 15.38 41.57 3.79
277 278 5.547181 ATGCGATTGATATTCAGAGCATG 57.453 39.130 12.33 0.00 39.33 4.06
278 279 4.634199 TGCGATTGATATTCAGAGCATGA 58.366 39.130 0.00 0.00 35.62 3.07
279 280 4.450080 TGCGATTGATATTCAGAGCATGAC 59.550 41.667 0.00 0.00 37.77 3.06
280 281 4.689812 GCGATTGATATTCAGAGCATGACT 59.310 41.667 0.00 0.00 37.77 3.41
281 282 5.178996 GCGATTGATATTCAGAGCATGACTT 59.821 40.000 0.00 0.00 37.77 3.01
282 283 6.591261 CGATTGATATTCAGAGCATGACTTG 58.409 40.000 0.00 0.00 37.77 3.16
283 284 6.202379 CGATTGATATTCAGAGCATGACTTGT 59.798 38.462 0.00 0.00 37.77 3.16
284 285 6.915544 TTGATATTCAGAGCATGACTTGTC 57.084 37.500 0.00 0.00 37.77 3.18
285 286 6.231258 TGATATTCAGAGCATGACTTGTCT 57.769 37.500 0.00 0.00 37.77 3.41
286 287 6.047231 TGATATTCAGAGCATGACTTGTCTG 58.953 40.000 0.00 0.07 37.77 3.51
287 288 2.756840 TCAGAGCATGACTTGTCTGG 57.243 50.000 0.00 0.00 35.73 3.86
288 289 1.085091 CAGAGCATGACTTGTCTGGC 58.915 55.000 0.00 5.87 33.49 4.85
289 290 0.982704 AGAGCATGACTTGTCTGGCT 59.017 50.000 15.52 15.52 0.00 4.75
290 291 2.093816 CAGAGCATGACTTGTCTGGCTA 60.094 50.000 15.55 0.00 33.49 3.93
291 292 2.568956 AGAGCATGACTTGTCTGGCTAA 59.431 45.455 15.55 0.00 0.00 3.09
292 293 2.935201 GAGCATGACTTGTCTGGCTAAG 59.065 50.000 15.55 0.00 0.00 2.18
293 294 2.304180 AGCATGACTTGTCTGGCTAAGT 59.696 45.455 14.52 0.00 39.67 2.24
294 295 3.077359 GCATGACTTGTCTGGCTAAGTT 58.923 45.455 0.00 0.00 37.27 2.66
295 296 3.503748 GCATGACTTGTCTGGCTAAGTTT 59.496 43.478 0.00 0.00 37.27 2.66
296 297 4.695455 GCATGACTTGTCTGGCTAAGTTTA 59.305 41.667 0.00 0.00 37.27 2.01
297 298 5.181245 GCATGACTTGTCTGGCTAAGTTTAA 59.819 40.000 0.00 0.00 37.27 1.52
298 299 6.603095 CATGACTTGTCTGGCTAAGTTTAAC 58.397 40.000 2.35 0.00 37.27 2.01
299 300 5.925509 TGACTTGTCTGGCTAAGTTTAACT 58.074 37.500 0.00 0.00 37.27 2.24
300 301 5.989777 TGACTTGTCTGGCTAAGTTTAACTC 59.010 40.000 0.00 0.00 37.27 3.01
301 302 6.176014 ACTTGTCTGGCTAAGTTTAACTCT 57.824 37.500 0.00 0.00 33.59 3.24
302 303 5.992217 ACTTGTCTGGCTAAGTTTAACTCTG 59.008 40.000 0.00 0.00 33.59 3.35
303 304 4.894784 TGTCTGGCTAAGTTTAACTCTGG 58.105 43.478 0.00 0.00 0.00 3.86
304 305 4.347000 TGTCTGGCTAAGTTTAACTCTGGT 59.653 41.667 0.00 0.00 0.00 4.00
305 306 5.541101 TGTCTGGCTAAGTTTAACTCTGGTA 59.459 40.000 0.00 0.00 0.00 3.25
306 307 6.100668 GTCTGGCTAAGTTTAACTCTGGTAG 58.899 44.000 0.00 0.00 0.00 3.18
307 308 6.014647 TCTGGCTAAGTTTAACTCTGGTAGA 58.985 40.000 0.00 0.00 0.00 2.59
309 310 6.014647 TGGCTAAGTTTAACTCTGGTAGAGA 58.985 40.000 12.45 0.00 45.07 3.10
310 311 6.668283 TGGCTAAGTTTAACTCTGGTAGAGAT 59.332 38.462 12.45 3.57 45.07 2.75
311 312 6.981559 GGCTAAGTTTAACTCTGGTAGAGATG 59.018 42.308 12.45 0.00 45.07 2.90
312 313 6.477360 GCTAAGTTTAACTCTGGTAGAGATGC 59.523 42.308 12.45 0.00 45.07 3.91
313 314 6.613153 AAGTTTAACTCTGGTAGAGATGCT 57.387 37.500 12.45 0.01 45.07 3.79
314 315 6.215495 AGTTTAACTCTGGTAGAGATGCTC 57.785 41.667 12.45 0.00 45.07 4.26
315 316 5.717178 AGTTTAACTCTGGTAGAGATGCTCA 59.283 40.000 12.45 0.00 45.07 4.26
316 317 6.382570 AGTTTAACTCTGGTAGAGATGCTCAT 59.617 38.462 12.45 0.00 45.07 2.90
317 318 4.935352 AACTCTGGTAGAGATGCTCATC 57.065 45.455 12.45 1.75 45.07 2.92
318 319 3.230134 ACTCTGGTAGAGATGCTCATCC 58.770 50.000 12.45 0.00 45.07 3.51
319 320 2.228582 CTCTGGTAGAGATGCTCATCCG 59.771 54.545 6.27 0.00 45.07 4.18
320 321 1.959985 CTGGTAGAGATGCTCATCCGT 59.040 52.381 6.27 0.00 38.58 4.69
321 322 3.149981 CTGGTAGAGATGCTCATCCGTA 58.850 50.000 6.27 0.00 38.58 4.02
322 323 2.885266 TGGTAGAGATGCTCATCCGTAC 59.115 50.000 6.27 8.02 38.58 3.67
323 324 2.229302 GGTAGAGATGCTCATCCGTACC 59.771 54.545 16.29 16.29 38.46 3.34
324 325 2.073252 AGAGATGCTCATCCGTACCA 57.927 50.000 6.27 0.00 38.58 3.25
325 326 1.959985 AGAGATGCTCATCCGTACCAG 59.040 52.381 6.27 0.00 38.58 4.00
326 327 1.683917 GAGATGCTCATCCGTACCAGT 59.316 52.381 6.27 0.00 38.58 4.00
327 328 2.101582 GAGATGCTCATCCGTACCAGTT 59.898 50.000 6.27 0.00 38.58 3.16
328 329 2.159043 AGATGCTCATCCGTACCAGTTG 60.159 50.000 6.27 0.00 38.58 3.16
329 330 0.973632 TGCTCATCCGTACCAGTTGT 59.026 50.000 0.00 0.00 0.00 3.32
330 331 1.067142 TGCTCATCCGTACCAGTTGTC 60.067 52.381 0.00 0.00 0.00 3.18
331 332 1.067142 GCTCATCCGTACCAGTTGTCA 60.067 52.381 0.00 0.00 0.00 3.58
332 333 2.418746 GCTCATCCGTACCAGTTGTCAT 60.419 50.000 0.00 0.00 0.00 3.06
333 334 3.190079 CTCATCCGTACCAGTTGTCATG 58.810 50.000 0.00 0.00 0.00 3.07
334 335 2.093711 TCATCCGTACCAGTTGTCATGG 60.094 50.000 0.00 0.00 43.87 3.66
335 336 0.036765 TCCGTACCAGTTGTCATGGC 60.037 55.000 0.00 0.00 41.87 4.40
336 337 1.024579 CCGTACCAGTTGTCATGGCC 61.025 60.000 0.00 0.00 41.87 5.36
337 338 0.321210 CGTACCAGTTGTCATGGCCA 60.321 55.000 8.56 8.56 41.87 5.36
338 339 1.165270 GTACCAGTTGTCATGGCCAC 58.835 55.000 8.16 0.00 41.87 5.01
339 340 0.767998 TACCAGTTGTCATGGCCACA 59.232 50.000 8.16 0.00 41.87 4.17
340 341 0.112995 ACCAGTTGTCATGGCCACAT 59.887 50.000 8.16 0.00 41.87 3.21
354 355 3.677527 ACATGCTGTGAAGGCTGC 58.322 55.556 0.00 0.00 0.00 5.25
355 356 1.074423 ACATGCTGTGAAGGCTGCT 59.926 52.632 0.00 0.00 34.93 4.24
356 357 1.241990 ACATGCTGTGAAGGCTGCTG 61.242 55.000 0.00 0.00 34.93 4.41
357 358 2.341101 ATGCTGTGAAGGCTGCTGC 61.341 57.895 7.10 7.10 34.93 5.25
358 359 2.672307 GCTGTGAAGGCTGCTGCT 60.672 61.111 15.64 0.00 39.59 4.24
359 360 1.376424 GCTGTGAAGGCTGCTGCTA 60.376 57.895 15.64 0.00 39.59 3.49
360 361 1.642952 GCTGTGAAGGCTGCTGCTAC 61.643 60.000 15.64 9.94 39.59 3.58
361 362 0.036577 CTGTGAAGGCTGCTGCTACT 60.037 55.000 15.64 1.96 39.59 2.57
362 363 1.205655 CTGTGAAGGCTGCTGCTACTA 59.794 52.381 15.64 0.00 39.59 1.82
363 364 1.205655 TGTGAAGGCTGCTGCTACTAG 59.794 52.381 15.64 0.00 39.59 2.57
364 365 1.205893 GTGAAGGCTGCTGCTACTAGT 59.794 52.381 15.64 0.00 39.59 2.57
365 366 1.205655 TGAAGGCTGCTGCTACTAGTG 59.794 52.381 15.64 0.00 39.59 2.74
366 367 1.205893 GAAGGCTGCTGCTACTAGTGT 59.794 52.381 15.64 0.00 39.59 3.55
367 368 0.534412 AGGCTGCTGCTACTAGTGTG 59.466 55.000 15.64 0.00 39.59 3.82
368 369 0.460987 GGCTGCTGCTACTAGTGTGG 60.461 60.000 15.64 0.00 39.59 4.17
369 370 0.247736 GCTGCTGCTACTAGTGTGGT 59.752 55.000 5.39 0.00 36.03 4.16
370 371 1.476891 GCTGCTGCTACTAGTGTGGTA 59.523 52.381 5.39 0.00 36.03 3.25
371 372 2.101582 GCTGCTGCTACTAGTGTGGTAT 59.898 50.000 5.39 0.00 36.03 2.73
372 373 3.797184 GCTGCTGCTACTAGTGTGGTATC 60.797 52.174 5.39 0.00 36.03 2.24
373 374 2.693591 TGCTGCTACTAGTGTGGTATCC 59.306 50.000 5.39 0.00 0.00 2.59
374 375 2.036089 GCTGCTACTAGTGTGGTATCCC 59.964 54.545 5.39 0.00 0.00 3.85
375 376 2.293677 CTGCTACTAGTGTGGTATCCCG 59.706 54.545 5.39 0.00 0.00 5.14
376 377 1.000496 GCTACTAGTGTGGTATCCCGC 60.000 57.143 5.39 0.00 41.91 6.13
382 383 3.241493 TGTGGTATCCCGCAGTTTG 57.759 52.632 0.00 0.00 46.25 2.93
383 384 0.322098 TGTGGTATCCCGCAGTTTGG 60.322 55.000 0.00 0.00 46.25 3.28
384 385 3.668981 TGTGGTATCCCGCAGTTTGGG 62.669 57.143 0.00 0.00 46.25 4.12
390 391 2.597217 CCGCAGTTTGGGAGCCAA 60.597 61.111 0.00 0.00 42.29 4.52
391 392 2.644992 CGCAGTTTGGGAGCCAAC 59.355 61.111 0.00 0.00 43.82 3.77
392 393 2.919494 CGCAGTTTGGGAGCCAACC 61.919 63.158 0.00 0.00 43.82 3.77
393 394 1.531602 GCAGTTTGGGAGCCAACCT 60.532 57.895 0.00 0.00 43.82 3.50
394 395 2.344535 CAGTTTGGGAGCCAACCTG 58.655 57.895 0.00 0.00 44.92 4.00
395 396 1.531602 AGTTTGGGAGCCAACCTGC 60.532 57.895 0.00 0.00 43.82 4.85
400 401 3.051210 GGAGCCAACCTGCCAAAC 58.949 61.111 0.00 0.00 0.00 2.93
401 402 2.574018 GGAGCCAACCTGCCAAACC 61.574 63.158 0.00 0.00 0.00 3.27
402 403 1.832167 GAGCCAACCTGCCAAACCA 60.832 57.895 0.00 0.00 0.00 3.67
403 404 1.809567 GAGCCAACCTGCCAAACCAG 61.810 60.000 0.00 0.00 0.00 4.00
404 405 2.133641 GCCAACCTGCCAAACCAGT 61.134 57.895 0.00 0.00 0.00 4.00
405 406 0.825840 GCCAACCTGCCAAACCAGTA 60.826 55.000 0.00 0.00 0.00 2.74
406 407 1.698506 CCAACCTGCCAAACCAGTAA 58.301 50.000 0.00 0.00 0.00 2.24
407 408 1.613437 CCAACCTGCCAAACCAGTAAG 59.387 52.381 0.00 0.00 0.00 2.34
408 409 1.000274 CAACCTGCCAAACCAGTAAGC 60.000 52.381 0.00 0.00 0.00 3.09
409 410 0.889186 ACCTGCCAAACCAGTAAGCG 60.889 55.000 0.00 0.00 0.00 4.68
410 411 0.889186 CCTGCCAAACCAGTAAGCGT 60.889 55.000 0.00 0.00 0.00 5.07
411 412 0.951558 CTGCCAAACCAGTAAGCGTT 59.048 50.000 0.00 0.00 0.00 4.84
412 413 1.336755 CTGCCAAACCAGTAAGCGTTT 59.663 47.619 0.00 0.00 32.48 3.60
413 414 2.550606 CTGCCAAACCAGTAAGCGTTTA 59.449 45.455 0.00 0.00 31.15 2.01
414 415 2.950309 TGCCAAACCAGTAAGCGTTTAA 59.050 40.909 0.00 0.00 31.15 1.52
415 416 3.243134 TGCCAAACCAGTAAGCGTTTAAC 60.243 43.478 0.00 0.00 31.15 2.01
416 417 3.004002 GCCAAACCAGTAAGCGTTTAACT 59.996 43.478 0.00 0.00 31.15 2.24
417 418 4.779987 CCAAACCAGTAAGCGTTTAACTC 58.220 43.478 0.00 0.00 31.15 3.01
418 419 4.514066 CCAAACCAGTAAGCGTTTAACTCT 59.486 41.667 0.00 0.00 31.15 3.24
419 420 5.333875 CCAAACCAGTAAGCGTTTAACTCTC 60.334 44.000 0.00 0.00 31.15 3.20
420 421 3.922910 ACCAGTAAGCGTTTAACTCTCC 58.077 45.455 0.00 0.00 0.00 3.71
421 422 3.259902 CCAGTAAGCGTTTAACTCTCCC 58.740 50.000 0.00 0.00 0.00 4.30
422 423 3.056035 CCAGTAAGCGTTTAACTCTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
423 424 4.159135 CCAGTAAGCGTTTAACTCTCCCTA 59.841 45.833 0.00 0.00 0.00 3.53
424 425 5.100943 CAGTAAGCGTTTAACTCTCCCTAC 58.899 45.833 0.00 0.00 0.00 3.18
425 426 5.015515 AGTAAGCGTTTAACTCTCCCTACT 58.984 41.667 0.00 0.00 0.00 2.57
426 427 4.453177 AAGCGTTTAACTCTCCCTACTC 57.547 45.455 0.00 0.00 0.00 2.59
427 428 2.759535 AGCGTTTAACTCTCCCTACTCC 59.240 50.000 0.00 0.00 0.00 3.85
428 429 2.159128 GCGTTTAACTCTCCCTACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
429 430 3.363627 CGTTTAACTCTCCCTACTCCCT 58.636 50.000 0.00 0.00 0.00 4.20
430 431 3.130693 CGTTTAACTCTCCCTACTCCCTG 59.869 52.174 0.00 0.00 0.00 4.45
431 432 4.095211 GTTTAACTCTCCCTACTCCCTGT 58.905 47.826 0.00 0.00 0.00 4.00
432 433 2.239681 AACTCTCCCTACTCCCTGTG 57.760 55.000 0.00 0.00 0.00 3.66
433 434 1.085715 ACTCTCCCTACTCCCTGTGT 58.914 55.000 0.00 0.00 0.00 3.72
434 435 2.285707 ACTCTCCCTACTCCCTGTGTA 58.714 52.381 0.00 0.00 0.00 2.90
435 436 2.025131 ACTCTCCCTACTCCCTGTGTAC 60.025 54.545 0.00 0.00 0.00 2.90
436 437 2.242708 CTCTCCCTACTCCCTGTGTACT 59.757 54.545 0.00 0.00 0.00 2.73
437 438 2.653366 TCTCCCTACTCCCTGTGTACTT 59.347 50.000 0.00 0.00 0.00 2.24
438 439 3.077088 TCTCCCTACTCCCTGTGTACTTT 59.923 47.826 0.00 0.00 0.00 2.66
439 440 3.838903 CTCCCTACTCCCTGTGTACTTTT 59.161 47.826 0.00 0.00 0.00 2.27
440 441 5.014534 TCCCTACTCCCTGTGTACTTTTA 57.985 43.478 0.00 0.00 0.00 1.52
441 442 5.596763 TCCCTACTCCCTGTGTACTTTTAT 58.403 41.667 0.00 0.00 0.00 1.40
442 443 6.027482 TCCCTACTCCCTGTGTACTTTTATT 58.973 40.000 0.00 0.00 0.00 1.40
443 444 6.502863 TCCCTACTCCCTGTGTACTTTTATTT 59.497 38.462 0.00 0.00 0.00 1.40
444 445 6.598064 CCCTACTCCCTGTGTACTTTTATTTG 59.402 42.308 0.00 0.00 0.00 2.32
445 446 7.166167 CCTACTCCCTGTGTACTTTTATTTGT 58.834 38.462 0.00 0.00 0.00 2.83
446 447 8.316214 CCTACTCCCTGTGTACTTTTATTTGTA 58.684 37.037 0.00 0.00 0.00 2.41
447 448 9.886132 CTACTCCCTGTGTACTTTTATTTGTAT 57.114 33.333 0.00 0.00 0.00 2.29
448 449 8.788325 ACTCCCTGTGTACTTTTATTTGTATC 57.212 34.615 0.00 0.00 0.00 2.24
449 450 8.380099 ACTCCCTGTGTACTTTTATTTGTATCA 58.620 33.333 0.00 0.00 0.00 2.15
450 451 9.226606 CTCCCTGTGTACTTTTATTTGTATCAA 57.773 33.333 0.00 0.00 0.00 2.57
451 452 9.575868 TCCCTGTGTACTTTTATTTGTATCAAA 57.424 29.630 0.00 0.00 0.00 2.69
452 453 9.620660 CCCTGTGTACTTTTATTTGTATCAAAC 57.379 33.333 0.00 0.00 0.00 2.93
467 468 8.929827 TTGTATCAAACATAATTGCAATCAGG 57.070 30.769 13.38 1.72 38.10 3.86
468 469 6.979817 TGTATCAAACATAATTGCAATCAGGC 59.020 34.615 13.38 0.00 31.43 4.85
469 470 5.664294 TCAAACATAATTGCAATCAGGCT 57.336 34.783 13.38 0.00 34.04 4.58
470 471 5.412640 TCAAACATAATTGCAATCAGGCTG 58.587 37.500 13.38 8.58 34.04 4.85
471 472 4.395959 AACATAATTGCAATCAGGCTGG 57.604 40.909 13.38 0.00 34.04 4.85
472 473 3.368248 ACATAATTGCAATCAGGCTGGT 58.632 40.909 13.38 3.88 34.04 4.00
473 474 4.535781 ACATAATTGCAATCAGGCTGGTA 58.464 39.130 13.38 0.00 34.04 3.25
474 475 4.955450 ACATAATTGCAATCAGGCTGGTAA 59.045 37.500 13.38 4.94 34.04 2.85
475 476 3.874392 AATTGCAATCAGGCTGGTAAC 57.126 42.857 13.38 3.68 34.04 2.50
503 504 9.667107 TTTATCTTCTCTTGTACATTTACAGGG 57.333 33.333 0.00 0.00 39.44 4.45
504 505 6.928348 TCTTCTCTTGTACATTTACAGGGA 57.072 37.500 0.00 0.00 39.44 4.20
505 506 6.936279 TCTTCTCTTGTACATTTACAGGGAG 58.064 40.000 13.37 13.37 39.44 4.30
506 507 6.724441 TCTTCTCTTGTACATTTACAGGGAGA 59.276 38.462 16.12 16.12 41.68 3.71
507 508 6.531503 TCTCTTGTACATTTACAGGGAGAG 57.468 41.667 16.12 13.68 40.29 3.20
508 509 6.017192 TCTCTTGTACATTTACAGGGAGAGT 58.983 40.000 16.12 0.00 39.60 3.24
509 510 6.037786 TCTTGTACATTTACAGGGAGAGTG 57.962 41.667 0.00 0.00 39.44 3.51
510 511 4.202245 TGTACATTTACAGGGAGAGTGC 57.798 45.455 0.00 0.00 32.98 4.40
511 512 3.838317 TGTACATTTACAGGGAGAGTGCT 59.162 43.478 0.00 0.00 32.98 4.40
512 513 3.618690 ACATTTACAGGGAGAGTGCTC 57.381 47.619 0.00 0.00 40.54 4.26
513 514 2.906389 ACATTTACAGGGAGAGTGCTCA 59.094 45.455 1.82 0.00 43.14 4.26
514 515 3.055530 ACATTTACAGGGAGAGTGCTCAG 60.056 47.826 1.82 0.00 43.14 3.35
515 516 2.604912 TTACAGGGAGAGTGCTCAGA 57.395 50.000 1.82 0.00 43.14 3.27
516 517 2.836636 TACAGGGAGAGTGCTCAGAT 57.163 50.000 1.82 0.00 43.14 2.90
517 518 1.949799 ACAGGGAGAGTGCTCAGATT 58.050 50.000 1.82 0.00 43.14 2.40
518 519 1.830477 ACAGGGAGAGTGCTCAGATTC 59.170 52.381 1.82 0.00 43.14 2.52
519 520 1.138661 CAGGGAGAGTGCTCAGATTCC 59.861 57.143 1.82 0.00 43.14 3.01
520 521 1.008206 AGGGAGAGTGCTCAGATTCCT 59.992 52.381 1.82 0.00 43.14 3.36
521 522 1.138661 GGGAGAGTGCTCAGATTCCTG 59.861 57.143 1.82 0.00 43.14 3.86
522 523 1.138661 GGAGAGTGCTCAGATTCCTGG 59.861 57.143 1.82 0.00 43.14 4.45
523 524 0.540923 AGAGTGCTCAGATTCCTGGC 59.459 55.000 1.82 0.00 40.76 4.85
524 525 0.251354 GAGTGCTCAGATTCCTGGCA 59.749 55.000 0.00 0.00 41.18 4.92
525 526 0.694771 AGTGCTCAGATTCCTGGCAA 59.305 50.000 9.12 0.00 43.24 4.52
526 527 0.807496 GTGCTCAGATTCCTGGCAAC 59.193 55.000 9.12 3.34 43.24 4.17
538 539 4.243383 GGCAACAACAACGATGGC 57.757 55.556 0.00 0.00 0.00 4.40
539 540 1.372872 GGCAACAACAACGATGGCC 60.373 57.895 0.00 0.00 32.71 5.36
867 880 2.363018 TCTCCCCCGAGCTCACTG 60.363 66.667 15.40 0.96 35.94 3.66
868 881 4.154347 CTCCCCCGAGCTCACTGC 62.154 72.222 15.40 0.00 43.29 4.40
884 897 0.683973 CTGCCCTCACTCACTCTGTT 59.316 55.000 0.00 0.00 0.00 3.16
885 898 0.681733 TGCCCTCACTCACTCTGTTC 59.318 55.000 0.00 0.00 0.00 3.18
886 899 0.036858 GCCCTCACTCACTCTGTTCC 60.037 60.000 0.00 0.00 0.00 3.62
888 901 1.548269 CCCTCACTCACTCTGTTCCTC 59.452 57.143 0.00 0.00 0.00 3.71
889 902 2.524306 CCTCACTCACTCTGTTCCTCT 58.476 52.381 0.00 0.00 0.00 3.69
890 903 2.230992 CCTCACTCACTCTGTTCCTCTG 59.769 54.545 0.00 0.00 0.00 3.35
931 948 4.322080 TCTTTTCTTCTTCTCGCACTCA 57.678 40.909 0.00 0.00 0.00 3.41
963 990 2.511373 GCGACCATGCCATCGTGA 60.511 61.111 12.10 0.00 40.49 4.35
1694 1781 7.194761 TCTGGGATATGTATCATGAGGAGAAT 58.805 38.462 0.09 0.00 34.40 2.40
1931 2018 7.436118 CAAAGATTGAGGTTCAAATGGAGAAA 58.564 34.615 0.00 0.00 40.12 2.52
2501 2664 4.697352 GCATTACATAGGAGGTTGCATAGG 59.303 45.833 0.00 0.00 0.00 2.57
2542 2743 5.305386 AGGATGCAACATAGATAGCAGTACA 59.695 40.000 0.00 0.00 40.71 2.90
2543 2744 6.013898 AGGATGCAACATAGATAGCAGTACAT 60.014 38.462 0.00 0.00 40.71 2.29
2544 2745 7.179160 AGGATGCAACATAGATAGCAGTACATA 59.821 37.037 0.00 0.00 40.71 2.29
2545 2746 7.490725 GGATGCAACATAGATAGCAGTACATAG 59.509 40.741 0.00 0.00 40.71 2.23
2699 2911 2.697761 GCCTGAGCGTCGTACCTCA 61.698 63.158 0.00 0.00 36.69 3.86
2724 2936 6.480763 TGCTTCACTTTGGTAGGATGATTTA 58.519 36.000 0.00 0.00 0.00 1.40
3080 3319 2.635915 CCCTTGAACACTGGTGTACCTA 59.364 50.000 6.81 0.00 44.13 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.174395 CAGAGTTTATCTCACTTGGGACAG 58.826 45.833 0.00 0.00 44.98 3.51
1 2 4.563580 GCAGAGTTTATCTCACTTGGGACA 60.564 45.833 0.00 0.00 44.98 4.02
3 4 3.055094 GGCAGAGTTTATCTCACTTGGGA 60.055 47.826 0.00 0.00 44.98 4.37
4 5 3.274288 GGCAGAGTTTATCTCACTTGGG 58.726 50.000 0.00 0.00 44.98 4.12
5 6 3.274288 GGGCAGAGTTTATCTCACTTGG 58.726 50.000 0.00 0.00 44.98 3.61
6 7 3.942829 TGGGCAGAGTTTATCTCACTTG 58.057 45.455 0.00 0.00 44.98 3.16
7 8 4.851639 ATGGGCAGAGTTTATCTCACTT 57.148 40.909 0.00 0.00 44.98 3.16
8 9 4.521146 CAATGGGCAGAGTTTATCTCACT 58.479 43.478 0.00 0.00 44.98 3.41
9 10 3.065925 GCAATGGGCAGAGTTTATCTCAC 59.934 47.826 0.00 0.00 44.98 3.51
10 11 3.282021 GCAATGGGCAGAGTTTATCTCA 58.718 45.455 0.00 0.00 44.98 3.27
11 12 2.289002 CGCAATGGGCAGAGTTTATCTC 59.711 50.000 0.00 0.00 45.17 2.75
12 13 2.292267 CGCAATGGGCAGAGTTTATCT 58.708 47.619 0.00 0.00 45.17 1.98
13 14 1.268743 GCGCAATGGGCAGAGTTTATC 60.269 52.381 17.58 0.00 45.17 1.75
14 15 0.740737 GCGCAATGGGCAGAGTTTAT 59.259 50.000 17.58 0.00 45.17 1.40
15 16 0.607762 TGCGCAATGGGCAGAGTTTA 60.608 50.000 21.10 0.00 46.09 2.01
16 17 1.902918 TGCGCAATGGGCAGAGTTT 60.903 52.632 21.10 0.00 46.09 2.66
17 18 2.282391 TGCGCAATGGGCAGAGTT 60.282 55.556 21.10 0.00 46.09 3.01
23 24 3.474230 CTCCGATTGCGCAATGGGC 62.474 63.158 42.41 27.60 43.64 5.36
24 25 1.779025 CTCTCCGATTGCGCAATGGG 61.779 60.000 41.95 41.95 44.82 4.00
25 26 1.645455 CTCTCCGATTGCGCAATGG 59.355 57.895 38.34 34.36 35.83 3.16
26 27 1.010350 GCTCTCCGATTGCGCAATG 60.010 57.895 38.34 27.24 35.83 2.82
27 28 1.153289 AGCTCTCCGATTGCGCAAT 60.153 52.632 34.41 34.41 35.83 3.56
28 29 1.811266 GAGCTCTCCGATTGCGCAA 60.811 57.895 27.24 27.24 35.83 4.85
29 30 2.202797 GAGCTCTCCGATTGCGCA 60.203 61.111 5.66 5.66 35.83 6.09
30 31 2.964389 GGAGCTCTCCGATTGCGC 60.964 66.667 14.64 0.00 40.36 6.09
39 40 0.249405 CTCGCCATCTTGGAGCTCTC 60.249 60.000 14.64 4.40 40.96 3.20
40 41 1.684386 CCTCGCCATCTTGGAGCTCT 61.684 60.000 14.64 0.00 40.96 4.09
41 42 1.227497 CCTCGCCATCTTGGAGCTC 60.227 63.158 4.71 4.71 40.96 4.09
42 43 2.739996 CCCTCGCCATCTTGGAGCT 61.740 63.158 0.00 0.00 40.96 4.09
43 44 2.203126 CCCTCGCCATCTTGGAGC 60.203 66.667 0.00 0.00 40.96 4.70
44 45 2.203126 GCCCTCGCCATCTTGGAG 60.203 66.667 0.00 0.00 40.96 3.86
45 46 2.688666 AGCCCTCGCCATCTTGGA 60.689 61.111 0.00 0.00 40.96 3.53
46 47 2.515523 CAGCCCTCGCCATCTTGG 60.516 66.667 0.00 0.00 41.55 3.61
47 48 3.207669 GCAGCCCTCGCCATCTTG 61.208 66.667 0.00 0.00 34.57 3.02
57 58 4.008933 GACACACGAGGCAGCCCT 62.009 66.667 8.22 0.00 46.74 5.19
58 59 3.941657 GAGACACACGAGGCAGCCC 62.942 68.421 8.22 0.00 0.00 5.19
59 60 2.433318 GAGACACACGAGGCAGCC 60.433 66.667 1.84 1.84 0.00 4.85
60 61 2.433318 GGAGACACACGAGGCAGC 60.433 66.667 0.00 0.00 0.00 5.25
61 62 0.668706 CTTGGAGACACACGAGGCAG 60.669 60.000 0.00 0.00 42.67 4.85
62 63 1.367471 CTTGGAGACACACGAGGCA 59.633 57.895 0.00 0.00 42.67 4.75
63 64 1.374758 CCTTGGAGACACACGAGGC 60.375 63.158 0.00 0.00 42.67 4.70
64 65 1.374758 GCCTTGGAGACACACGAGG 60.375 63.158 0.00 0.00 42.67 4.63
65 66 1.374758 GGCCTTGGAGACACACGAG 60.375 63.158 0.00 0.00 42.67 4.18
66 67 2.741092 GGCCTTGGAGACACACGA 59.259 61.111 0.00 0.00 42.67 4.35
67 68 2.738521 CGGCCTTGGAGACACACG 60.739 66.667 0.00 0.00 42.67 4.49
68 69 3.050275 GCGGCCTTGGAGACACAC 61.050 66.667 0.00 0.00 42.67 3.82
69 70 4.680237 CGCGGCCTTGGAGACACA 62.680 66.667 0.00 0.00 42.67 3.72
77 78 3.055719 ATTCACACCGCGGCCTTG 61.056 61.111 28.58 19.46 0.00 3.61
78 79 3.055719 CATTCACACCGCGGCCTT 61.056 61.111 28.58 6.47 0.00 4.35
79 80 4.329545 ACATTCACACCGCGGCCT 62.330 61.111 28.58 7.33 0.00 5.19
80 81 3.799755 GACATTCACACCGCGGCC 61.800 66.667 28.58 0.00 0.00 6.13
81 82 3.799755 GGACATTCACACCGCGGC 61.800 66.667 28.58 4.84 0.00 6.53
82 83 3.487202 CGGACATTCACACCGCGG 61.487 66.667 26.86 26.86 40.19 6.46
86 87 2.040544 CCAGGCGGACATTCACACC 61.041 63.158 0.00 0.00 0.00 4.16
87 88 0.605319 TTCCAGGCGGACATTCACAC 60.605 55.000 0.00 0.00 42.67 3.82
88 89 0.321564 CTTCCAGGCGGACATTCACA 60.322 55.000 0.00 0.00 42.67 3.58
89 90 0.321653 ACTTCCAGGCGGACATTCAC 60.322 55.000 0.00 0.00 42.67 3.18
90 91 0.036388 GACTTCCAGGCGGACATTCA 60.036 55.000 0.00 0.00 42.67 2.57
91 92 0.250513 AGACTTCCAGGCGGACATTC 59.749 55.000 0.00 0.00 42.67 2.67
92 93 0.036010 CAGACTTCCAGGCGGACATT 60.036 55.000 0.00 0.00 42.67 2.71
93 94 1.599047 CAGACTTCCAGGCGGACAT 59.401 57.895 0.00 0.00 42.67 3.06
94 95 2.583441 CCAGACTTCCAGGCGGACA 61.583 63.158 0.00 0.00 42.67 4.02
95 96 2.266055 CCAGACTTCCAGGCGGAC 59.734 66.667 0.00 0.00 42.67 4.79
96 97 3.003173 CCCAGACTTCCAGGCGGA 61.003 66.667 0.00 0.00 40.60 5.54
97 98 3.322466 ACCCAGACTTCCAGGCGG 61.322 66.667 0.00 0.00 0.00 6.13
98 99 2.046892 CACCCAGACTTCCAGGCG 60.047 66.667 0.00 0.00 0.00 5.52
99 100 2.360475 GCACCCAGACTTCCAGGC 60.360 66.667 0.00 0.00 0.00 4.85
100 101 1.002868 CAGCACCCAGACTTCCAGG 60.003 63.158 0.00 0.00 0.00 4.45
101 102 1.002868 CCAGCACCCAGACTTCCAG 60.003 63.158 0.00 0.00 0.00 3.86
102 103 1.461268 TCCAGCACCCAGACTTCCA 60.461 57.895 0.00 0.00 0.00 3.53
103 104 1.298014 CTCCAGCACCCAGACTTCC 59.702 63.158 0.00 0.00 0.00 3.46
104 105 1.194781 TCCTCCAGCACCCAGACTTC 61.195 60.000 0.00 0.00 0.00 3.01
105 106 1.152030 TCCTCCAGCACCCAGACTT 60.152 57.895 0.00 0.00 0.00 3.01
106 107 1.611851 CTCCTCCAGCACCCAGACT 60.612 63.158 0.00 0.00 0.00 3.24
107 108 2.664081 CCTCCTCCAGCACCCAGAC 61.664 68.421 0.00 0.00 0.00 3.51
108 109 2.284921 CCTCCTCCAGCACCCAGA 60.285 66.667 0.00 0.00 0.00 3.86
109 110 2.284921 TCCTCCTCCAGCACCCAG 60.285 66.667 0.00 0.00 0.00 4.45
110 111 2.284921 CTCCTCCTCCAGCACCCA 60.285 66.667 0.00 0.00 0.00 4.51
111 112 3.086600 CCTCCTCCTCCAGCACCC 61.087 72.222 0.00 0.00 0.00 4.61
112 113 2.039624 TCCTCCTCCTCCAGCACC 59.960 66.667 0.00 0.00 0.00 5.01
113 114 2.063378 CCTCCTCCTCCTCCAGCAC 61.063 68.421 0.00 0.00 0.00 4.40
114 115 2.366167 CCTCCTCCTCCTCCAGCA 59.634 66.667 0.00 0.00 0.00 4.41
115 116 3.160748 GCCTCCTCCTCCTCCAGC 61.161 72.222 0.00 0.00 0.00 4.85
116 117 2.837291 CGCCTCCTCCTCCTCCAG 60.837 72.222 0.00 0.00 0.00 3.86
117 118 2.931180 TTCGCCTCCTCCTCCTCCA 61.931 63.158 0.00 0.00 0.00 3.86
118 119 2.042843 TTCGCCTCCTCCTCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
119 120 1.045911 ATGTTCGCCTCCTCCTCCTC 61.046 60.000 0.00 0.00 0.00 3.71
120 121 0.261991 TATGTTCGCCTCCTCCTCCT 59.738 55.000 0.00 0.00 0.00 3.69
121 122 1.001406 CATATGTTCGCCTCCTCCTCC 59.999 57.143 0.00 0.00 0.00 4.30
122 123 1.689273 ACATATGTTCGCCTCCTCCTC 59.311 52.381 1.41 0.00 0.00 3.71
123 124 1.794714 ACATATGTTCGCCTCCTCCT 58.205 50.000 1.41 0.00 0.00 3.69
124 125 2.213499 CAACATATGTTCGCCTCCTCC 58.787 52.381 18.25 0.00 35.83 4.30
125 126 2.158957 TCCAACATATGTTCGCCTCCTC 60.159 50.000 18.25 0.00 35.83 3.71
126 127 1.837439 TCCAACATATGTTCGCCTCCT 59.163 47.619 18.25 0.00 35.83 3.69
127 128 2.325583 TCCAACATATGTTCGCCTCC 57.674 50.000 18.25 0.00 35.83 4.30
128 129 4.024556 CAGAATCCAACATATGTTCGCCTC 60.025 45.833 18.25 12.27 35.83 4.70
129 130 3.879295 CAGAATCCAACATATGTTCGCCT 59.121 43.478 18.25 8.49 35.83 5.52
130 131 3.876914 TCAGAATCCAACATATGTTCGCC 59.123 43.478 18.25 6.51 35.83 5.54
131 132 5.484173 TTCAGAATCCAACATATGTTCGC 57.516 39.130 18.25 6.38 35.83 4.70
132 133 6.841119 TGTTTCAGAATCCAACATATGTTCG 58.159 36.000 18.25 12.36 35.83 3.95
133 134 8.044060 TCTGTTTCAGAATCCAACATATGTTC 57.956 34.615 18.25 7.22 37.57 3.18
134 135 8.408043 TTCTGTTTCAGAATCCAACATATGTT 57.592 30.769 15.47 15.47 44.27 2.71
147 148 2.698797 AGGAGGACGTTCTGTTTCAGAA 59.301 45.455 0.00 7.92 46.50 3.02
148 149 2.035961 CAGGAGGACGTTCTGTTTCAGA 59.964 50.000 0.00 0.00 38.87 3.27
149 150 2.035961 TCAGGAGGACGTTCTGTTTCAG 59.964 50.000 0.00 0.00 0.00 3.02
150 151 2.035961 CTCAGGAGGACGTTCTGTTTCA 59.964 50.000 0.00 0.00 0.00 2.69
151 152 2.678324 CTCAGGAGGACGTTCTGTTTC 58.322 52.381 0.00 0.00 0.00 2.78
152 153 2.821991 CTCAGGAGGACGTTCTGTTT 57.178 50.000 0.00 0.00 0.00 2.83
164 165 4.412796 TTTCACATATCTGCCTCAGGAG 57.587 45.455 0.00 0.00 31.51 3.69
165 166 4.225942 ACTTTTCACATATCTGCCTCAGGA 59.774 41.667 0.00 0.00 31.51 3.86
166 167 4.521146 ACTTTTCACATATCTGCCTCAGG 58.479 43.478 0.00 0.00 31.51 3.86
167 168 4.574013 GGACTTTTCACATATCTGCCTCAG 59.426 45.833 0.00 0.00 0.00 3.35
168 169 4.517285 GGACTTTTCACATATCTGCCTCA 58.483 43.478 0.00 0.00 0.00 3.86
169 170 3.879892 GGGACTTTTCACATATCTGCCTC 59.120 47.826 0.00 0.00 0.00 4.70
170 171 3.682718 CGGGACTTTTCACATATCTGCCT 60.683 47.826 0.00 0.00 0.00 4.75
171 172 2.614057 CGGGACTTTTCACATATCTGCC 59.386 50.000 0.00 0.00 0.00 4.85
172 173 2.614057 CCGGGACTTTTCACATATCTGC 59.386 50.000 0.00 0.00 0.00 4.26
173 174 3.206150 CCCGGGACTTTTCACATATCTG 58.794 50.000 18.48 0.00 0.00 2.90
174 175 2.844348 ACCCGGGACTTTTCACATATCT 59.156 45.455 32.02 0.00 0.00 1.98
175 176 2.943033 CACCCGGGACTTTTCACATATC 59.057 50.000 32.02 0.00 0.00 1.63
176 177 2.307686 ACACCCGGGACTTTTCACATAT 59.692 45.455 32.02 0.00 0.00 1.78
177 178 1.700739 ACACCCGGGACTTTTCACATA 59.299 47.619 32.02 0.00 0.00 2.29
178 179 0.476771 ACACCCGGGACTTTTCACAT 59.523 50.000 32.02 0.00 0.00 3.21
179 180 0.464735 CACACCCGGGACTTTTCACA 60.465 55.000 32.02 0.00 0.00 3.58
180 181 1.792118 GCACACCCGGGACTTTTCAC 61.792 60.000 32.02 3.78 0.00 3.18
181 182 1.527380 GCACACCCGGGACTTTTCA 60.527 57.895 32.02 0.00 0.00 2.69
182 183 2.265904 GGCACACCCGGGACTTTTC 61.266 63.158 32.02 10.55 0.00 2.29
183 184 2.203437 GGCACACCCGGGACTTTT 60.203 61.111 32.02 0.00 0.00 2.27
184 185 3.494254 TGGCACACCCGGGACTTT 61.494 61.111 32.02 0.00 35.87 2.66
196 197 2.870411 GGTAACCTTATCGACATGGCAC 59.130 50.000 0.00 0.00 0.00 5.01
197 198 2.502130 TGGTAACCTTATCGACATGGCA 59.498 45.455 0.00 0.00 0.00 4.92
198 199 3.188159 TGGTAACCTTATCGACATGGC 57.812 47.619 0.00 0.00 0.00 4.40
199 200 3.554324 CGTTGGTAACCTTATCGACATGG 59.446 47.826 0.00 0.00 29.21 3.66
200 201 3.554324 CCGTTGGTAACCTTATCGACATG 59.446 47.826 0.00 0.00 29.21 3.21
201 202 3.448301 TCCGTTGGTAACCTTATCGACAT 59.552 43.478 0.00 0.00 29.21 3.06
202 203 2.824936 TCCGTTGGTAACCTTATCGACA 59.175 45.455 0.00 0.00 29.21 4.35
203 204 3.119352 AGTCCGTTGGTAACCTTATCGAC 60.119 47.826 0.00 0.00 0.00 4.20
204 205 3.091545 AGTCCGTTGGTAACCTTATCGA 58.908 45.455 0.00 0.00 0.00 3.59
205 206 3.515330 AGTCCGTTGGTAACCTTATCG 57.485 47.619 0.00 0.00 0.00 2.92
206 207 4.142093 TGCTAGTCCGTTGGTAACCTTATC 60.142 45.833 0.00 0.00 0.00 1.75
207 208 3.770933 TGCTAGTCCGTTGGTAACCTTAT 59.229 43.478 0.00 0.00 0.00 1.73
208 209 3.164268 TGCTAGTCCGTTGGTAACCTTA 58.836 45.455 0.00 0.00 0.00 2.69
209 210 1.972795 TGCTAGTCCGTTGGTAACCTT 59.027 47.619 0.00 0.00 0.00 3.50
210 211 1.636148 TGCTAGTCCGTTGGTAACCT 58.364 50.000 0.00 0.00 0.00 3.50
211 212 2.460757 TTGCTAGTCCGTTGGTAACC 57.539 50.000 0.00 0.00 0.00 2.85
212 213 3.592059 TCATTGCTAGTCCGTTGGTAAC 58.408 45.455 0.00 0.00 0.00 2.50
213 214 3.965379 TCATTGCTAGTCCGTTGGTAA 57.035 42.857 0.00 0.00 0.00 2.85
214 215 4.481368 AATCATTGCTAGTCCGTTGGTA 57.519 40.909 0.00 0.00 0.00 3.25
215 216 3.350219 AATCATTGCTAGTCCGTTGGT 57.650 42.857 0.00 0.00 0.00 3.67
216 217 3.248602 GCTAATCATTGCTAGTCCGTTGG 59.751 47.826 0.00 0.00 0.00 3.77
217 218 3.060272 CGCTAATCATTGCTAGTCCGTTG 60.060 47.826 0.00 0.00 0.00 4.10
218 219 3.123804 CGCTAATCATTGCTAGTCCGTT 58.876 45.455 0.00 0.00 0.00 4.44
219 220 2.545952 CCGCTAATCATTGCTAGTCCGT 60.546 50.000 0.00 0.00 0.00 4.69
220 221 2.061773 CCGCTAATCATTGCTAGTCCG 58.938 52.381 0.00 0.00 0.00 4.79
221 222 1.801178 GCCGCTAATCATTGCTAGTCC 59.199 52.381 0.00 0.00 0.00 3.85
222 223 2.760374 AGCCGCTAATCATTGCTAGTC 58.240 47.619 0.00 0.00 0.00 2.59
223 224 2.918712 AGCCGCTAATCATTGCTAGT 57.081 45.000 0.00 0.00 0.00 2.57
224 225 2.663602 CGTAGCCGCTAATCATTGCTAG 59.336 50.000 0.46 0.00 35.38 3.42
225 226 2.295070 TCGTAGCCGCTAATCATTGCTA 59.705 45.455 0.46 0.00 33.63 3.49
226 227 1.068588 TCGTAGCCGCTAATCATTGCT 59.931 47.619 0.46 0.00 36.11 3.91
227 228 1.497991 TCGTAGCCGCTAATCATTGC 58.502 50.000 0.46 0.00 0.00 3.56
228 229 3.059884 ACATCGTAGCCGCTAATCATTG 58.940 45.455 0.46 0.00 0.00 2.82
229 230 3.005897 AGACATCGTAGCCGCTAATCATT 59.994 43.478 0.46 0.00 0.00 2.57
230 231 2.558795 AGACATCGTAGCCGCTAATCAT 59.441 45.455 0.46 0.00 0.00 2.45
231 232 1.954382 AGACATCGTAGCCGCTAATCA 59.046 47.619 0.46 0.00 0.00 2.57
232 233 2.586900 GAGACATCGTAGCCGCTAATC 58.413 52.381 0.46 0.00 0.00 1.75
233 234 1.269998 GGAGACATCGTAGCCGCTAAT 59.730 52.381 0.46 0.00 0.00 1.73
234 235 0.666913 GGAGACATCGTAGCCGCTAA 59.333 55.000 0.46 0.00 0.00 3.09
235 236 0.179026 AGGAGACATCGTAGCCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
236 237 0.179026 TAGGAGACATCGTAGCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
237 238 0.882474 ATAGGAGACATCGTAGCCGC 59.118 55.000 0.00 0.00 0.00 6.53
238 239 1.401670 GCATAGGAGACATCGTAGCCG 60.402 57.143 0.00 0.00 0.00 5.52
239 240 1.401670 CGCATAGGAGACATCGTAGCC 60.402 57.143 0.00 0.00 0.00 3.93
240 241 1.535896 TCGCATAGGAGACATCGTAGC 59.464 52.381 0.00 0.00 0.00 3.58
241 242 4.083271 TCAATCGCATAGGAGACATCGTAG 60.083 45.833 0.00 0.00 0.00 3.51
242 243 3.818773 TCAATCGCATAGGAGACATCGTA 59.181 43.478 0.00 0.00 0.00 3.43
243 244 2.623416 TCAATCGCATAGGAGACATCGT 59.377 45.455 0.00 0.00 0.00 3.73
244 245 3.288809 TCAATCGCATAGGAGACATCG 57.711 47.619 0.00 0.00 0.00 3.84
245 246 7.038048 TGAATATCAATCGCATAGGAGACATC 58.962 38.462 0.00 0.00 0.00 3.06
246 247 6.939622 TGAATATCAATCGCATAGGAGACAT 58.060 36.000 0.00 0.00 0.00 3.06
247 248 6.209391 TCTGAATATCAATCGCATAGGAGACA 59.791 38.462 0.00 0.00 0.00 3.41
248 249 6.625362 TCTGAATATCAATCGCATAGGAGAC 58.375 40.000 0.00 0.00 0.00 3.36
249 250 6.626844 GCTCTGAATATCAATCGCATAGGAGA 60.627 42.308 0.00 0.00 0.00 3.71
250 251 5.519566 GCTCTGAATATCAATCGCATAGGAG 59.480 44.000 0.00 0.00 0.00 3.69
251 252 5.047092 TGCTCTGAATATCAATCGCATAGGA 60.047 40.000 0.00 0.00 0.00 2.94
252 253 5.173664 TGCTCTGAATATCAATCGCATAGG 58.826 41.667 0.00 0.00 0.00 2.57
253 254 6.534079 TCATGCTCTGAATATCAATCGCATAG 59.466 38.462 0.00 0.00 34.26 2.23
254 255 6.312180 GTCATGCTCTGAATATCAATCGCATA 59.688 38.462 0.00 0.00 34.26 3.14
255 256 5.121925 GTCATGCTCTGAATATCAATCGCAT 59.878 40.000 0.00 0.00 35.45 4.73
256 257 4.450080 GTCATGCTCTGAATATCAATCGCA 59.550 41.667 0.00 0.00 35.07 5.10
257 258 4.689812 AGTCATGCTCTGAATATCAATCGC 59.310 41.667 0.00 0.00 35.07 4.58
258 259 6.202379 ACAAGTCATGCTCTGAATATCAATCG 59.798 38.462 0.00 0.00 35.07 3.34
259 260 7.441760 AGACAAGTCATGCTCTGAATATCAATC 59.558 37.037 2.72 0.00 35.07 2.67
260 261 7.226918 CAGACAAGTCATGCTCTGAATATCAAT 59.773 37.037 2.72 0.00 38.43 2.57
261 262 6.537660 CAGACAAGTCATGCTCTGAATATCAA 59.462 38.462 2.72 0.00 38.43 2.57
262 263 6.047231 CAGACAAGTCATGCTCTGAATATCA 58.953 40.000 2.72 0.00 38.43 2.15
263 264 5.466058 CCAGACAAGTCATGCTCTGAATATC 59.534 44.000 2.72 0.00 38.43 1.63
264 265 5.366460 CCAGACAAGTCATGCTCTGAATAT 58.634 41.667 2.72 0.00 38.43 1.28
265 266 4.763073 CCAGACAAGTCATGCTCTGAATA 58.237 43.478 2.72 0.00 38.43 1.75
266 267 3.607741 CCAGACAAGTCATGCTCTGAAT 58.392 45.455 2.72 0.00 38.43 2.57
267 268 2.873245 GCCAGACAAGTCATGCTCTGAA 60.873 50.000 2.72 0.00 38.43 3.02
268 269 1.338484 GCCAGACAAGTCATGCTCTGA 60.338 52.381 2.72 0.00 38.43 3.27
269 270 1.085091 GCCAGACAAGTCATGCTCTG 58.915 55.000 2.72 0.00 37.14 3.35
270 271 0.982704 AGCCAGACAAGTCATGCTCT 59.017 50.000 9.71 0.00 34.93 4.09
271 272 2.680312 TAGCCAGACAAGTCATGCTC 57.320 50.000 16.34 2.73 38.81 4.26
272 273 2.304180 ACTTAGCCAGACAAGTCATGCT 59.696 45.455 16.83 16.83 40.29 3.79
273 274 2.704572 ACTTAGCCAGACAAGTCATGC 58.295 47.619 2.72 4.63 28.88 4.06
274 275 6.428159 AGTTAAACTTAGCCAGACAAGTCATG 59.572 38.462 2.72 0.00 33.92 3.07
275 276 6.534634 AGTTAAACTTAGCCAGACAAGTCAT 58.465 36.000 2.72 0.00 33.92 3.06
276 277 5.925509 AGTTAAACTTAGCCAGACAAGTCA 58.074 37.500 2.72 0.00 33.92 3.41
277 278 6.146347 CAGAGTTAAACTTAGCCAGACAAGTC 59.854 42.308 0.00 0.00 33.92 3.01
278 279 5.992217 CAGAGTTAAACTTAGCCAGACAAGT 59.008 40.000 0.00 0.00 36.56 3.16
279 280 5.409826 CCAGAGTTAAACTTAGCCAGACAAG 59.590 44.000 0.00 0.00 0.00 3.16
280 281 5.163237 ACCAGAGTTAAACTTAGCCAGACAA 60.163 40.000 0.00 0.00 0.00 3.18
281 282 4.347000 ACCAGAGTTAAACTTAGCCAGACA 59.653 41.667 0.00 0.00 0.00 3.41
282 283 4.895961 ACCAGAGTTAAACTTAGCCAGAC 58.104 43.478 0.00 0.00 0.00 3.51
283 284 6.014647 TCTACCAGAGTTAAACTTAGCCAGA 58.985 40.000 0.00 0.00 0.00 3.86
284 285 6.153000 TCTCTACCAGAGTTAAACTTAGCCAG 59.847 42.308 3.26 0.00 42.83 4.85
285 286 6.014647 TCTCTACCAGAGTTAAACTTAGCCA 58.985 40.000 3.26 0.00 42.83 4.75
286 287 6.527057 TCTCTACCAGAGTTAAACTTAGCC 57.473 41.667 3.26 0.00 42.83 3.93
287 288 6.477360 GCATCTCTACCAGAGTTAAACTTAGC 59.523 42.308 3.26 0.00 42.83 3.09
288 289 7.777095 AGCATCTCTACCAGAGTTAAACTTAG 58.223 38.462 3.26 0.00 42.83 2.18
289 290 7.396339 TGAGCATCTCTACCAGAGTTAAACTTA 59.604 37.037 3.26 0.00 42.83 2.24
290 291 6.211584 TGAGCATCTCTACCAGAGTTAAACTT 59.788 38.462 3.26 0.00 42.83 2.66
291 292 5.717178 TGAGCATCTCTACCAGAGTTAAACT 59.283 40.000 3.26 0.00 42.83 2.66
292 293 5.967088 TGAGCATCTCTACCAGAGTTAAAC 58.033 41.667 3.26 0.00 42.83 2.01
293 294 6.183360 GGATGAGCATCTCTACCAGAGTTAAA 60.183 42.308 10.04 0.00 42.83 1.52
294 295 5.303078 GGATGAGCATCTCTACCAGAGTTAA 59.697 44.000 10.04 0.00 42.83 2.01
295 296 4.830046 GGATGAGCATCTCTACCAGAGTTA 59.170 45.833 10.04 0.00 42.83 2.24
296 297 3.640967 GGATGAGCATCTCTACCAGAGTT 59.359 47.826 10.04 0.00 42.83 3.01
297 298 3.230134 GGATGAGCATCTCTACCAGAGT 58.770 50.000 10.04 0.00 42.83 3.24
298 299 2.228582 CGGATGAGCATCTCTACCAGAG 59.771 54.545 10.04 0.00 43.64 3.35
299 300 2.234143 CGGATGAGCATCTCTACCAGA 58.766 52.381 10.04 0.00 37.92 3.86
300 301 1.959985 ACGGATGAGCATCTCTACCAG 59.040 52.381 10.04 0.38 37.92 4.00
301 302 2.073252 ACGGATGAGCATCTCTACCA 57.927 50.000 10.04 0.00 37.92 3.25
302 303 2.229302 GGTACGGATGAGCATCTCTACC 59.771 54.545 10.04 13.18 37.92 3.18
303 304 2.885266 TGGTACGGATGAGCATCTCTAC 59.115 50.000 10.04 9.07 37.92 2.59
304 305 3.149981 CTGGTACGGATGAGCATCTCTA 58.850 50.000 10.04 0.00 37.92 2.43
305 306 1.959985 CTGGTACGGATGAGCATCTCT 59.040 52.381 10.04 0.00 37.92 3.10
306 307 1.683917 ACTGGTACGGATGAGCATCTC 59.316 52.381 10.04 0.00 38.67 2.75
307 308 1.781786 ACTGGTACGGATGAGCATCT 58.218 50.000 10.04 0.00 38.67 2.90
308 309 2.205074 CAACTGGTACGGATGAGCATC 58.795 52.381 1.86 1.86 40.10 3.91
309 310 1.555075 ACAACTGGTACGGATGAGCAT 59.445 47.619 0.00 0.00 40.10 3.79
310 311 0.973632 ACAACTGGTACGGATGAGCA 59.026 50.000 0.00 0.00 40.10 4.26
311 312 1.067142 TGACAACTGGTACGGATGAGC 60.067 52.381 0.00 0.00 40.10 4.26
312 313 3.190079 CATGACAACTGGTACGGATGAG 58.810 50.000 0.00 0.00 40.10 2.90
313 314 2.093711 CCATGACAACTGGTACGGATGA 60.094 50.000 0.00 0.00 40.10 2.92
314 315 2.279741 CCATGACAACTGGTACGGATG 58.720 52.381 0.00 0.00 43.51 3.51
315 316 1.406887 GCCATGACAACTGGTACGGAT 60.407 52.381 0.00 0.00 38.67 4.18
316 317 0.036765 GCCATGACAACTGGTACGGA 60.037 55.000 0.00 0.00 38.67 4.69
317 318 1.024579 GGCCATGACAACTGGTACGG 61.025 60.000 0.00 0.00 42.99 4.02
318 319 0.321210 TGGCCATGACAACTGGTACG 60.321 55.000 0.00 0.00 36.10 3.67
319 320 1.165270 GTGGCCATGACAACTGGTAC 58.835 55.000 9.72 0.00 36.10 3.34
320 321 0.767998 TGTGGCCATGACAACTGGTA 59.232 50.000 9.72 0.00 36.10 3.25
321 322 0.112995 ATGTGGCCATGACAACTGGT 59.887 50.000 9.72 0.00 36.10 4.00
322 323 2.965805 ATGTGGCCATGACAACTGG 58.034 52.632 9.72 0.00 36.81 4.00
338 339 1.506718 CAGCAGCCTTCACAGCATG 59.493 57.895 0.00 0.00 46.00 4.06
339 340 2.341101 GCAGCAGCCTTCACAGCAT 61.341 57.895 0.00 0.00 33.58 3.79
340 341 2.115734 TAGCAGCAGCCTTCACAGCA 62.116 55.000 0.00 0.00 43.56 4.41
341 342 1.376424 TAGCAGCAGCCTTCACAGC 60.376 57.895 0.00 0.00 43.56 4.40
342 343 0.036577 AGTAGCAGCAGCCTTCACAG 60.037 55.000 0.00 0.00 43.56 3.66
343 344 1.205655 CTAGTAGCAGCAGCCTTCACA 59.794 52.381 0.00 0.00 43.56 3.58
344 345 1.205893 ACTAGTAGCAGCAGCCTTCAC 59.794 52.381 0.00 0.00 43.56 3.18
345 346 1.205655 CACTAGTAGCAGCAGCCTTCA 59.794 52.381 0.00 0.00 43.56 3.02
346 347 1.205893 ACACTAGTAGCAGCAGCCTTC 59.794 52.381 0.00 0.00 43.56 3.46
347 348 1.066573 CACACTAGTAGCAGCAGCCTT 60.067 52.381 0.00 0.00 43.56 4.35
348 349 0.534412 CACACTAGTAGCAGCAGCCT 59.466 55.000 0.00 0.00 43.56 4.58
349 350 0.460987 CCACACTAGTAGCAGCAGCC 60.461 60.000 0.00 0.00 43.56 4.85
350 351 0.247736 ACCACACTAGTAGCAGCAGC 59.752 55.000 0.00 0.00 42.56 5.25
351 352 3.243569 GGATACCACACTAGTAGCAGCAG 60.244 52.174 0.00 0.00 0.00 4.24
352 353 2.693591 GGATACCACACTAGTAGCAGCA 59.306 50.000 0.00 0.00 0.00 4.41
353 354 3.372660 GGATACCACACTAGTAGCAGC 57.627 52.381 0.00 0.00 0.00 5.25
372 373 4.659172 TGGCTCCCAAACTGCGGG 62.659 66.667 0.00 0.00 46.03 6.13
373 374 2.597217 TTGGCTCCCAAACTGCGG 60.597 61.111 0.00 0.00 40.92 5.69
374 375 2.644992 GTTGGCTCCCAAACTGCG 59.355 61.111 0.00 0.00 45.73 5.18
375 376 3.051210 GGTTGGCTCCCAAACTGC 58.949 61.111 4.82 0.00 46.75 4.40
379 380 2.203625 GGCAGGTTGGCTCCCAAA 60.204 61.111 0.00 0.00 45.73 3.28
380 381 2.595954 TTTGGCAGGTTGGCTCCCAA 62.596 55.000 4.25 0.00 44.10 4.12
381 382 3.080158 TTTGGCAGGTTGGCTCCCA 62.080 57.895 4.25 0.00 44.10 4.37
382 383 2.203625 TTTGGCAGGTTGGCTCCC 60.204 61.111 4.25 0.00 44.10 4.30
383 384 2.574018 GGTTTGGCAGGTTGGCTCC 61.574 63.158 4.25 1.38 44.10 4.70
384 385 1.809567 CTGGTTTGGCAGGTTGGCTC 61.810 60.000 4.25 0.00 44.10 4.70
385 386 1.833934 CTGGTTTGGCAGGTTGGCT 60.834 57.895 4.25 0.00 44.10 4.75
386 387 0.825840 TACTGGTTTGGCAGGTTGGC 60.826 55.000 0.00 0.00 44.03 4.52
387 388 1.613437 CTTACTGGTTTGGCAGGTTGG 59.387 52.381 0.00 0.00 0.00 3.77
388 389 1.000274 GCTTACTGGTTTGGCAGGTTG 60.000 52.381 0.00 0.00 0.00 3.77
389 390 1.328279 GCTTACTGGTTTGGCAGGTT 58.672 50.000 0.00 0.00 0.00 3.50
390 391 0.889186 CGCTTACTGGTTTGGCAGGT 60.889 55.000 0.00 0.00 0.00 4.00
391 392 0.889186 ACGCTTACTGGTTTGGCAGG 60.889 55.000 0.00 0.00 0.00 4.85
392 393 0.951558 AACGCTTACTGGTTTGGCAG 59.048 50.000 0.00 0.00 0.00 4.85
393 394 1.394618 AAACGCTTACTGGTTTGGCA 58.605 45.000 0.00 0.00 35.21 4.92
394 395 3.004002 AGTTAAACGCTTACTGGTTTGGC 59.996 43.478 0.00 0.00 37.01 4.52
395 396 4.514066 AGAGTTAAACGCTTACTGGTTTGG 59.486 41.667 0.00 0.00 37.01 3.28
396 397 5.333875 GGAGAGTTAAACGCTTACTGGTTTG 60.334 44.000 0.00 0.00 37.01 2.93
397 398 4.753610 GGAGAGTTAAACGCTTACTGGTTT 59.246 41.667 0.00 0.00 39.50 3.27
398 399 4.313282 GGAGAGTTAAACGCTTACTGGTT 58.687 43.478 0.00 0.00 0.00 3.67
399 400 3.306571 GGGAGAGTTAAACGCTTACTGGT 60.307 47.826 0.00 0.00 0.00 4.00
400 401 3.056035 AGGGAGAGTTAAACGCTTACTGG 60.056 47.826 0.00 0.00 0.00 4.00
401 402 4.189639 AGGGAGAGTTAAACGCTTACTG 57.810 45.455 0.00 0.00 0.00 2.74
402 403 5.015515 AGTAGGGAGAGTTAAACGCTTACT 58.984 41.667 0.00 0.00 0.00 2.24
403 404 5.321959 AGTAGGGAGAGTTAAACGCTTAC 57.678 43.478 0.00 0.00 0.00 2.34
404 405 4.400567 GGAGTAGGGAGAGTTAAACGCTTA 59.599 45.833 0.00 0.00 0.00 3.09
405 406 3.195182 GGAGTAGGGAGAGTTAAACGCTT 59.805 47.826 0.00 0.00 0.00 4.68
406 407 2.759535 GGAGTAGGGAGAGTTAAACGCT 59.240 50.000 0.00 0.00 0.00 5.07
407 408 2.159128 GGGAGTAGGGAGAGTTAAACGC 60.159 54.545 0.00 0.00 0.00 4.84
408 409 3.130693 CAGGGAGTAGGGAGAGTTAAACG 59.869 52.174 0.00 0.00 0.00 3.60
409 410 4.081586 CACAGGGAGTAGGGAGAGTTAAAC 60.082 50.000 0.00 0.00 0.00 2.01
410 411 4.094476 CACAGGGAGTAGGGAGAGTTAAA 58.906 47.826 0.00 0.00 0.00 1.52
411 412 3.077088 ACACAGGGAGTAGGGAGAGTTAA 59.923 47.826 0.00 0.00 0.00 2.01
412 413 2.653366 ACACAGGGAGTAGGGAGAGTTA 59.347 50.000 0.00 0.00 0.00 2.24
413 414 1.433592 ACACAGGGAGTAGGGAGAGTT 59.566 52.381 0.00 0.00 0.00 3.01
414 415 1.085715 ACACAGGGAGTAGGGAGAGT 58.914 55.000 0.00 0.00 0.00 3.24
415 416 2.242708 AGTACACAGGGAGTAGGGAGAG 59.757 54.545 0.00 0.00 0.00 3.20
416 417 2.285707 AGTACACAGGGAGTAGGGAGA 58.714 52.381 0.00 0.00 0.00 3.71
417 418 2.830651 AGTACACAGGGAGTAGGGAG 57.169 55.000 0.00 0.00 0.00 4.30
418 419 3.555117 AAAGTACACAGGGAGTAGGGA 57.445 47.619 0.00 0.00 0.00 4.20
419 420 5.952347 ATAAAAGTACACAGGGAGTAGGG 57.048 43.478 0.00 0.00 0.00 3.53
420 421 7.166167 ACAAATAAAAGTACACAGGGAGTAGG 58.834 38.462 0.00 0.00 0.00 3.18
421 422 9.886132 ATACAAATAAAAGTACACAGGGAGTAG 57.114 33.333 0.00 0.00 0.00 2.57
422 423 9.880157 GATACAAATAAAAGTACACAGGGAGTA 57.120 33.333 0.00 0.00 0.00 2.59
423 424 8.380099 TGATACAAATAAAAGTACACAGGGAGT 58.620 33.333 0.00 0.00 0.00 3.85
424 425 8.786826 TGATACAAATAAAAGTACACAGGGAG 57.213 34.615 0.00 0.00 0.00 4.30
425 426 9.575868 TTTGATACAAATAAAAGTACACAGGGA 57.424 29.630 0.00 0.00 0.00 4.20
426 427 9.620660 GTTTGATACAAATAAAAGTACACAGGG 57.379 33.333 0.00 0.00 0.00 4.45
441 442 9.368674 CCTGATTGCAATTATGTTTGATACAAA 57.631 29.630 14.33 0.00 40.89 2.83
442 443 7.492020 GCCTGATTGCAATTATGTTTGATACAA 59.508 33.333 14.33 0.00 40.89 2.41
443 444 6.979817 GCCTGATTGCAATTATGTTTGATACA 59.020 34.615 14.33 1.26 41.97 2.29
444 445 7.168637 CAGCCTGATTGCAATTATGTTTGATAC 59.831 37.037 14.33 0.00 0.00 2.24
445 446 7.204604 CAGCCTGATTGCAATTATGTTTGATA 58.795 34.615 14.33 0.00 0.00 2.15
446 447 6.046593 CAGCCTGATTGCAATTATGTTTGAT 58.953 36.000 14.33 0.00 0.00 2.57
447 448 5.412640 CAGCCTGATTGCAATTATGTTTGA 58.587 37.500 14.33 0.00 0.00 2.69
448 449 4.569162 CCAGCCTGATTGCAATTATGTTTG 59.431 41.667 14.33 9.13 0.00 2.93
449 450 4.223477 ACCAGCCTGATTGCAATTATGTTT 59.777 37.500 14.33 0.00 0.00 2.83
450 451 3.770933 ACCAGCCTGATTGCAATTATGTT 59.229 39.130 14.33 1.54 0.00 2.71
451 452 3.368248 ACCAGCCTGATTGCAATTATGT 58.632 40.909 14.33 2.06 0.00 2.29
452 453 5.163530 TGTTACCAGCCTGATTGCAATTATG 60.164 40.000 14.33 7.75 0.00 1.90
453 454 4.955450 TGTTACCAGCCTGATTGCAATTAT 59.045 37.500 14.33 0.00 0.00 1.28
454 455 4.339748 TGTTACCAGCCTGATTGCAATTA 58.660 39.130 14.33 8.72 0.00 1.40
455 456 3.164268 TGTTACCAGCCTGATTGCAATT 58.836 40.909 14.33 0.00 0.00 2.32
456 457 2.806434 TGTTACCAGCCTGATTGCAAT 58.194 42.857 12.83 12.83 0.00 3.56
457 458 2.284754 TGTTACCAGCCTGATTGCAA 57.715 45.000 0.00 0.00 0.00 4.08
458 459 2.512692 ATGTTACCAGCCTGATTGCA 57.487 45.000 0.00 0.00 0.00 4.08
459 460 3.874392 AAATGTTACCAGCCTGATTGC 57.126 42.857 0.00 0.00 0.00 3.56
460 461 6.949352 AGATAAATGTTACCAGCCTGATTG 57.051 37.500 0.00 0.00 0.00 2.67
461 462 7.349598 AGAAGATAAATGTTACCAGCCTGATT 58.650 34.615 0.00 0.00 0.00 2.57
462 463 6.904626 AGAAGATAAATGTTACCAGCCTGAT 58.095 36.000 0.00 0.00 0.00 2.90
463 464 6.156949 AGAGAAGATAAATGTTACCAGCCTGA 59.843 38.462 0.00 0.00 0.00 3.86
464 465 6.352516 AGAGAAGATAAATGTTACCAGCCTG 58.647 40.000 0.00 0.00 0.00 4.85
465 466 6.567602 AGAGAAGATAAATGTTACCAGCCT 57.432 37.500 0.00 0.00 0.00 4.58
466 467 6.599638 ACAAGAGAAGATAAATGTTACCAGCC 59.400 38.462 0.00 0.00 0.00 4.85
467 468 7.617041 ACAAGAGAAGATAAATGTTACCAGC 57.383 36.000 0.00 0.00 0.00 4.85
468 469 9.653287 TGTACAAGAGAAGATAAATGTTACCAG 57.347 33.333 0.00 0.00 0.00 4.00
477 478 9.667107 CCCTGTAAATGTACAAGAGAAGATAAA 57.333 33.333 0.00 0.00 39.75 1.40
478 479 9.042450 TCCCTGTAAATGTACAAGAGAAGATAA 57.958 33.333 0.00 0.00 39.75 1.75
479 480 8.603898 TCCCTGTAAATGTACAAGAGAAGATA 57.396 34.615 0.00 0.00 39.75 1.98
480 481 7.400339 TCTCCCTGTAAATGTACAAGAGAAGAT 59.600 37.037 17.41 0.00 41.85 2.40
481 482 6.724441 TCTCCCTGTAAATGTACAAGAGAAGA 59.276 38.462 17.41 6.24 41.85 2.87
482 483 6.936279 TCTCCCTGTAAATGTACAAGAGAAG 58.064 40.000 17.41 4.50 41.85 2.85
483 484 6.497259 ACTCTCCCTGTAAATGTACAAGAGAA 59.503 38.462 22.15 10.23 42.95 2.87
484 485 6.017192 ACTCTCCCTGTAAATGTACAAGAGA 58.983 40.000 22.15 20.09 41.36 3.10
485 486 6.102663 CACTCTCCCTGTAAATGTACAAGAG 58.897 44.000 16.75 16.75 42.93 2.85
486 487 5.568825 GCACTCTCCCTGTAAATGTACAAGA 60.569 44.000 0.00 0.00 39.75 3.02
487 488 4.631813 GCACTCTCCCTGTAAATGTACAAG 59.368 45.833 0.00 0.00 39.75 3.16
488 489 4.286032 AGCACTCTCCCTGTAAATGTACAA 59.714 41.667 0.00 0.00 39.75 2.41
489 490 3.838317 AGCACTCTCCCTGTAAATGTACA 59.162 43.478 0.00 0.00 37.92 2.90
490 491 4.081642 TGAGCACTCTCCCTGTAAATGTAC 60.082 45.833 0.00 0.00 38.58 2.90
491 492 4.093743 TGAGCACTCTCCCTGTAAATGTA 58.906 43.478 0.00 0.00 38.58 2.29
492 493 2.906389 TGAGCACTCTCCCTGTAAATGT 59.094 45.455 0.00 0.00 38.58 2.71
493 494 3.196469 TCTGAGCACTCTCCCTGTAAATG 59.804 47.826 0.00 0.00 38.58 2.32
494 495 3.445008 TCTGAGCACTCTCCCTGTAAAT 58.555 45.455 0.00 0.00 38.58 1.40
495 496 2.889512 TCTGAGCACTCTCCCTGTAAA 58.110 47.619 0.00 0.00 38.58 2.01
496 497 2.604912 TCTGAGCACTCTCCCTGTAA 57.395 50.000 0.00 0.00 38.58 2.41
497 498 2.836636 ATCTGAGCACTCTCCCTGTA 57.163 50.000 0.00 0.00 38.58 2.74
498 499 1.830477 GAATCTGAGCACTCTCCCTGT 59.170 52.381 0.00 0.00 38.58 4.00
499 500 1.138661 GGAATCTGAGCACTCTCCCTG 59.861 57.143 0.00 0.00 38.58 4.45
500 501 1.008206 AGGAATCTGAGCACTCTCCCT 59.992 52.381 0.00 0.00 38.58 4.20
501 502 1.138661 CAGGAATCTGAGCACTCTCCC 59.861 57.143 0.00 0.00 43.49 4.30
502 503 1.138661 CCAGGAATCTGAGCACTCTCC 59.861 57.143 0.00 0.00 43.49 3.71
503 504 1.473080 GCCAGGAATCTGAGCACTCTC 60.473 57.143 0.00 0.00 43.49 3.20
504 505 0.540923 GCCAGGAATCTGAGCACTCT 59.459 55.000 0.00 0.00 43.49 3.24
505 506 0.251354 TGCCAGGAATCTGAGCACTC 59.749 55.000 0.00 0.00 43.49 3.51
506 507 0.694771 TTGCCAGGAATCTGAGCACT 59.305 50.000 0.00 0.00 42.50 4.40
507 508 0.807496 GTTGCCAGGAATCTGAGCAC 59.193 55.000 0.00 0.00 42.50 4.40
508 509 0.401356 TGTTGCCAGGAATCTGAGCA 59.599 50.000 0.00 0.00 43.49 4.26
509 510 1.200948 GTTGTTGCCAGGAATCTGAGC 59.799 52.381 0.00 0.00 43.49 4.26
510 511 2.507484 TGTTGTTGCCAGGAATCTGAG 58.493 47.619 0.00 0.00 43.49 3.35
511 512 2.622942 GTTGTTGTTGCCAGGAATCTGA 59.377 45.455 0.00 0.00 43.49 3.27
512 513 2.605338 CGTTGTTGTTGCCAGGAATCTG 60.605 50.000 0.00 0.00 40.59 2.90
513 514 1.608590 CGTTGTTGTTGCCAGGAATCT 59.391 47.619 0.00 0.00 0.00 2.40
514 515 1.606668 TCGTTGTTGTTGCCAGGAATC 59.393 47.619 0.00 0.00 0.00 2.52
515 516 1.686355 TCGTTGTTGTTGCCAGGAAT 58.314 45.000 0.00 0.00 0.00 3.01
516 517 1.336440 CATCGTTGTTGTTGCCAGGAA 59.664 47.619 0.00 0.00 0.00 3.36
517 518 0.950836 CATCGTTGTTGTTGCCAGGA 59.049 50.000 0.00 0.00 0.00 3.86
518 519 0.039256 CCATCGTTGTTGTTGCCAGG 60.039 55.000 0.00 0.00 0.00 4.45
519 520 0.664166 GCCATCGTTGTTGTTGCCAG 60.664 55.000 0.00 0.00 0.00 4.85
520 521 1.361993 GCCATCGTTGTTGTTGCCA 59.638 52.632 0.00 0.00 0.00 4.92
521 522 1.372872 GGCCATCGTTGTTGTTGCC 60.373 57.895 0.00 0.00 0.00 4.52
522 523 1.729131 CGGCCATCGTTGTTGTTGC 60.729 57.895 2.24 0.00 0.00 4.17
523 524 0.110238 CTCGGCCATCGTTGTTGTTG 60.110 55.000 2.24 0.00 40.32 3.33
524 525 0.250124 TCTCGGCCATCGTTGTTGTT 60.250 50.000 2.24 0.00 40.32 2.83
525 526 0.250124 TTCTCGGCCATCGTTGTTGT 60.250 50.000 2.24 0.00 40.32 3.32
526 527 0.443869 CTTCTCGGCCATCGTTGTTG 59.556 55.000 2.24 0.00 40.32 3.33
527 528 0.673644 CCTTCTCGGCCATCGTTGTT 60.674 55.000 2.24 0.00 40.32 2.83
528 529 1.079127 CCTTCTCGGCCATCGTTGT 60.079 57.895 2.24 0.00 40.32 3.32
529 530 1.815421 CCCTTCTCGGCCATCGTTG 60.815 63.158 2.24 0.00 40.32 4.10
530 531 1.961180 CTCCCTTCTCGGCCATCGTT 61.961 60.000 2.24 0.00 40.32 3.85
531 532 2.363795 TCCCTTCTCGGCCATCGT 60.364 61.111 2.24 0.00 40.32 3.73
532 533 1.107538 TACTCCCTTCTCGGCCATCG 61.108 60.000 2.24 0.00 40.90 3.84
533 534 1.120530 TTACTCCCTTCTCGGCCATC 58.879 55.000 2.24 0.00 0.00 3.51
534 535 1.807814 ATTACTCCCTTCTCGGCCAT 58.192 50.000 2.24 0.00 0.00 4.40
535 536 1.209504 CAATTACTCCCTTCTCGGCCA 59.790 52.381 2.24 0.00 0.00 5.36
536 537 1.485066 TCAATTACTCCCTTCTCGGCC 59.515 52.381 0.00 0.00 0.00 6.13
537 538 2.093658 TGTCAATTACTCCCTTCTCGGC 60.094 50.000 0.00 0.00 0.00 5.54
538 539 3.887621 TGTCAATTACTCCCTTCTCGG 57.112 47.619 0.00 0.00 0.00 4.63
539 540 6.554334 TTTTTGTCAATTACTCCCTTCTCG 57.446 37.500 0.00 0.00 0.00 4.04
867 880 0.036858 GGAACAGAGTGAGTGAGGGC 60.037 60.000 0.00 0.00 0.00 5.19
868 881 1.548269 GAGGAACAGAGTGAGTGAGGG 59.452 57.143 0.00 0.00 0.00 4.30
869 882 2.230992 CAGAGGAACAGAGTGAGTGAGG 59.769 54.545 0.00 0.00 0.00 3.86
870 883 2.352617 GCAGAGGAACAGAGTGAGTGAG 60.353 54.545 0.00 0.00 0.00 3.51
871 884 1.615883 GCAGAGGAACAGAGTGAGTGA 59.384 52.381 0.00 0.00 0.00 3.41
890 903 1.153588 GCAGTGGAGAGCAGAGAGC 60.154 63.158 0.00 0.00 46.19 4.09
947 974 2.173669 GGTCACGATGGCATGGTCG 61.174 63.158 12.50 9.79 43.13 4.79
963 990 0.544697 AGGTCTCGTTGTTGTTGGGT 59.455 50.000 0.00 0.00 0.00 4.51
1904 1991 4.834496 TCCATTTGAACCTCAATCTTTGCT 59.166 37.500 0.00 0.00 36.11 3.91
1931 2018 5.994668 CCTCTGTTCTTTCTTGAGCTTAAGT 59.005 40.000 16.97 0.00 0.00 2.24
2443 2551 8.587111 GTTTCAGTTTCATTTTCAGTTTCAGTC 58.413 33.333 0.00 0.00 0.00 3.51
2501 2664 5.048782 TGCATCCTCAGACAATTTGTGTTAC 60.049 40.000 6.80 0.00 41.96 2.50
2699 2911 4.574674 TCATCCTACCAAAGTGAAGCAT 57.425 40.909 0.00 0.00 0.00 3.79
2724 2936 3.733337 ACAAAGATGACGAAGAACAGCT 58.267 40.909 0.00 0.00 36.11 4.24
2913 3152 4.241555 GGCGGGATCAGCCGATGT 62.242 66.667 13.82 0.00 45.58 3.06
2921 3160 2.018644 GCAATGAAAGAGGCGGGATCA 61.019 52.381 0.00 0.00 0.00 2.92
3080 3319 1.204941 GACTACATGAAGGTCGCCACT 59.795 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.