Multiple sequence alignment - TraesCS1B01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G315300 chr1B 100.000 8377 0 0 1 8377 539664838 539656462 0.000000e+00 15470.0
1 TraesCS1B01G315300 chr1B 87.108 861 85 14 3532 4369 539577585 539576728 0.000000e+00 952.0
2 TraesCS1B01G315300 chr1B 90.600 617 50 5 4336 4948 539660297 539659685 0.000000e+00 811.0
3 TraesCS1B01G315300 chr1B 84.411 603 76 11 5698 6285 539576436 539575837 2.030000e-160 577.0
4 TraesCS1B01G315300 chr1B 89.435 407 39 1 4336 4738 539660091 539659685 2.090000e-140 510.0
5 TraesCS1B01G315300 chr1B 84.545 330 44 3 5349 5671 539576719 539576390 3.770000e-83 320.0
6 TraesCS1B01G315300 chr1B 78.523 447 81 11 6982 7417 539575108 539574666 6.400000e-71 279.0
7 TraesCS1B01G315300 chr1B 89.340 197 21 0 4336 4532 539659881 539659685 1.810000e-61 248.0
8 TraesCS1B01G315300 chr1B 77.130 223 37 5 1511 1719 172250218 172250440 5.310000e-22 117.0
9 TraesCS1B01G315300 chr1B 100.000 31 0 0 7893 7923 634265022 634265052 3.270000e-04 58.4
10 TraesCS1B01G315300 chr1D 94.010 5793 222 56 1964 7711 402130886 402125174 0.000000e+00 8660.0
11 TraesCS1B01G315300 chr1D 92.133 966 48 20 134 1086 402133089 402132139 0.000000e+00 1338.0
12 TraesCS1B01G315300 chr1D 88.380 852 82 9 3532 4369 401710891 401710043 0.000000e+00 1009.0
13 TraesCS1B01G315300 chr1D 84.504 1039 85 28 939 1962 402132123 402131146 0.000000e+00 957.0
14 TraesCS1B01G315300 chr1D 92.233 618 38 7 4542 5154 402128544 402127932 0.000000e+00 867.0
15 TraesCS1B01G315300 chr1D 90.924 617 48 5 4336 4948 402128338 402127726 0.000000e+00 822.0
16 TraesCS1B01G315300 chr1D 85.240 603 70 11 5698 6285 401709750 401709152 3.350000e-168 603.0
17 TraesCS1B01G315300 chr1D 91.912 408 27 3 4748 5154 402128544 402128142 4.390000e-157 566.0
18 TraesCS1B01G315300 chr1D 88.943 407 41 1 4336 4738 402128132 402127726 4.510000e-137 499.0
19 TraesCS1B01G315300 chr1D 86.517 445 30 8 7938 8377 402125054 402124635 5.920000e-126 462.0
20 TraesCS1B01G315300 chr1D 77.730 696 114 27 6985 7647 401708111 401707424 1.020000e-103 388.0
21 TraesCS1B01G315300 chr1D 85.196 331 41 4 5349 5671 401710034 401709704 4.850000e-87 333.0
22 TraesCS1B01G315300 chr1D 82.119 302 37 13 353 640 401761246 401760948 8.400000e-60 243.0
23 TraesCS1B01G315300 chr1D 92.806 139 9 1 1 139 402133461 402133324 5.130000e-47 200.0
24 TraesCS1B01G315300 chr1A 94.430 3052 125 14 4803 7840 497619853 497616833 0.000000e+00 4652.0
25 TraesCS1B01G315300 chr1A 94.382 2937 138 17 2326 5250 497623181 497620260 0.000000e+00 4484.0
26 TraesCS1B01G315300 chr1A 87.500 856 85 13 3532 4369 497541584 497540733 0.000000e+00 968.0
27 TraesCS1B01G315300 chr1A 90.865 613 52 4 4542 5154 497621170 497620562 0.000000e+00 819.0
28 TraesCS1B01G315300 chr1A 90.701 613 53 1 4336 4948 497620964 497620356 0.000000e+00 813.0
29 TraesCS1B01G315300 chr1A 86.003 743 83 12 787 1511 497625575 497624836 0.000000e+00 776.0
30 TraesCS1B01G315300 chr1A 84.577 603 75 13 5698 6285 497540441 497539842 4.360000e-162 582.0
31 TraesCS1B01G315300 chr1A 90.074 403 40 0 4336 4738 497620758 497620356 2.680000e-144 523.0
32 TraesCS1B01G315300 chr1A 86.600 500 26 16 1802 2273 497623668 497623182 1.610000e-141 514.0
33 TraesCS1B01G315300 chr1A 89.222 334 19 8 7954 8287 497616797 497616481 1.310000e-107 401.0
34 TraesCS1B01G315300 chr1A 78.120 649 111 20 6931 7555 497539158 497538517 4.740000e-102 383.0
35 TraesCS1B01G315300 chr1A 85.152 330 42 5 5349 5671 497540724 497540395 1.740000e-86 331.0
36 TraesCS1B01G315300 chr1A 90.909 55 4 1 1902 1956 497624408 497624355 1.170000e-08 73.1
37 TraesCS1B01G315300 chr7B 93.167 1844 84 20 2442 4260 722942692 722940866 0.000000e+00 2669.0
38 TraesCS1B01G315300 chr7B 89.831 59 5 1 7850 7907 741337492 741337550 3.240000e-09 75.0
39 TraesCS1B01G315300 chr4B 92.880 1840 99 14 2444 4260 360710732 360708902 0.000000e+00 2643.0
40 TraesCS1B01G315300 chr4B 100.000 36 0 0 7849 7884 97245532 97245567 5.430000e-07 67.6
41 TraesCS1B01G315300 chr2A 84.510 1672 222 23 3086 4738 84545457 84547110 0.000000e+00 1618.0
42 TraesCS1B01G315300 chr2A 87.204 930 102 9 4748 5671 84546714 84547632 0.000000e+00 1042.0
43 TraesCS1B01G315300 chr2B 82.891 1771 233 31 3006 4738 135682711 135684449 0.000000e+00 1528.0
44 TraesCS1B01G315300 chr2B 87.784 925 100 6 4748 5671 135684053 135684965 0.000000e+00 1070.0
45 TraesCS1B01G315300 chr2B 86.894 763 89 9 5699 6453 135684920 135685679 0.000000e+00 845.0
46 TraesCS1B01G315300 chr2B 79.917 483 73 14 6942 7412 135686055 135686525 4.850000e-87 333.0
47 TraesCS1B01G315300 chr2D 85.260 1384 174 17 3372 4738 83815939 83817309 0.000000e+00 1399.0
48 TraesCS1B01G315300 chr2D 87.284 928 102 8 4748 5671 83816913 83817828 0.000000e+00 1046.0
49 TraesCS1B01G315300 chr2D 86.012 865 103 11 5699 6548 83817783 83818644 0.000000e+00 911.0
50 TraesCS1B01G315300 chr2D 80.000 635 94 18 6942 7555 83818951 83819573 9.980000e-119 438.0
51 TraesCS1B01G315300 chr2D 84.932 73 6 3 7850 7922 37928952 37929019 1.510000e-07 69.4
52 TraesCS1B01G315300 chrUn 80.081 246 34 10 1529 1769 241853066 241852831 1.450000e-37 169.0
53 TraesCS1B01G315300 chrUn 75.806 248 46 8 1529 1768 311939800 311940041 6.870000e-21 113.0
54 TraesCS1B01G315300 chrUn 100.000 28 0 0 7895 7922 154494947 154494920 1.500000e-02 52.8
55 TraesCS1B01G315300 chrUn 100.000 28 0 0 7895 7922 154501776 154501749 1.500000e-02 52.8
56 TraesCS1B01G315300 chrUn 100.000 28 0 0 7895 7922 159526619 159526646 1.500000e-02 52.8
57 TraesCS1B01G315300 chr6B 79.487 234 33 10 1550 1776 290683581 290683356 1.460000e-32 152.0
58 TraesCS1B01G315300 chr6B 79.487 234 33 10 1550 1776 290705262 290705037 1.460000e-32 152.0
59 TraesCS1B01G315300 chr6B 73.930 257 46 13 1530 1776 705476498 705476743 5.390000e-12 84.2
60 TraesCS1B01G315300 chr5D 77.236 246 40 13 1538 1776 441791918 441791682 6.820000e-26 130.0
61 TraesCS1B01G315300 chr5D 76.329 207 42 5 1531 1732 422223402 422223198 4.140000e-18 104.0
62 TraesCS1B01G315300 chr3B 77.295 207 38 7 1529 1729 9580628 9580425 6.870000e-21 113.0
63 TraesCS1B01G315300 chr3B 95.122 41 2 0 7849 7889 341204094 341204054 1.950000e-06 65.8
64 TraesCS1B01G315300 chr3B 93.023 43 1 1 7842 7884 820445919 820445959 2.520000e-05 62.1
65 TraesCS1B01G315300 chr5B 86.842 76 9 1 7849 7924 244748289 244748363 5.390000e-12 84.2
66 TraesCS1B01G315300 chr6A 95.349 43 2 0 7842 7884 424801354 424801396 1.510000e-07 69.4
67 TraesCS1B01G315300 chr5A 97.436 39 1 0 7846 7884 569791510 569791472 5.430000e-07 67.6
68 TraesCS1B01G315300 chr4A 95.238 42 2 0 7842 7883 374701731 374701690 5.430000e-07 67.6
69 TraesCS1B01G315300 chr4A 100.000 35 0 0 7889 7923 522127552 522127586 1.950000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G315300 chr1B 539656462 539664838 8376 True 15470.000000 15470 100.000000 1 8377 1 chr1B.!!$R1 8376
1 TraesCS1B01G315300 chr1B 539574666 539577585 2919 True 532.000000 952 83.646750 3532 7417 4 chr1B.!!$R2 3885
2 TraesCS1B01G315300 chr1B 539659685 539660297 612 True 523.000000 811 89.791667 4336 4948 3 chr1B.!!$R3 612
3 TraesCS1B01G315300 chr1D 402124635 402133461 8826 True 1596.777778 8660 90.442444 1 8377 9 chr1D.!!$R3 8376
4 TraesCS1B01G315300 chr1D 401707424 401710891 3467 True 583.250000 1009 84.136500 3532 7647 4 chr1D.!!$R2 4115
5 TraesCS1B01G315300 chr1A 497616481 497625575 9094 True 1450.566667 4652 90.354000 787 8287 9 chr1A.!!$R2 7500
6 TraesCS1B01G315300 chr1A 497538517 497541584 3067 True 566.000000 968 83.837250 3532 7555 4 chr1A.!!$R1 4023
7 TraesCS1B01G315300 chr7B 722940866 722942692 1826 True 2669.000000 2669 93.167000 2442 4260 1 chr7B.!!$R1 1818
8 TraesCS1B01G315300 chr4B 360708902 360710732 1830 True 2643.000000 2643 92.880000 2444 4260 1 chr4B.!!$R1 1816
9 TraesCS1B01G315300 chr2A 84545457 84547632 2175 False 1330.000000 1618 85.857000 3086 5671 2 chr2A.!!$F1 2585
10 TraesCS1B01G315300 chr2B 135682711 135686525 3814 False 944.000000 1528 84.371500 3006 7412 4 chr2B.!!$F1 4406
11 TraesCS1B01G315300 chr2D 83815939 83819573 3634 False 948.500000 1399 84.639000 3372 7555 4 chr2D.!!$F2 4183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 976 0.391263 CGGCCTTTATATCTCCCGCC 60.391 60.000 0.00 0.0 0.00 6.13 F
1778 2203 0.101939 GGATACCACCGTTCTCCGTC 59.898 60.000 0.00 0.0 33.66 4.79 F
2269 4139 0.238817 GTCGCCACATTAAACCGCAA 59.761 50.000 0.00 0.0 0.00 4.85 F
2701 4589 0.036294 CTCGGTTCCTCCAAACCCTC 60.036 60.000 0.45 0.0 44.93 4.30 F
4147 6110 1.026718 GGAGCAGCGCTTGGTTGTAT 61.027 55.000 7.50 0.0 39.88 2.29 F
4338 6304 0.454600 CAAGCATGCACCACCTGATC 59.545 55.000 21.98 0.0 0.00 2.92 F
5217 8455 2.270352 TGCATTCTTTCTTCACCCGT 57.730 45.000 0.00 0.0 0.00 5.28 F
6173 9445 2.364632 CACTTCCATTTATCCGTGGCA 58.635 47.619 0.00 0.0 35.43 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 4150 0.238817 TTGCGGTTTAATGTGGCGAC 59.761 50.000 0.00 0.00 0.00 5.19 R
2676 4562 0.614979 TTGGAGGAACCGAGGGAGAG 60.615 60.000 0.00 0.00 42.61 3.20 R
3882 5831 1.691976 CATAGATGGCGTTGGTAGGGA 59.308 52.381 0.00 0.00 0.00 4.20 R
4338 6304 2.422479 CCATTGTTGGTGAGCTCATCTG 59.578 50.000 26.71 16.04 38.30 2.90 R
5186 8424 0.625316 AGAATGCATACCCAGGCACA 59.375 50.000 0.00 0.00 45.54 4.57 R
5370 8611 1.349026 CCTGAGGCAAGGAAGAACTCA 59.651 52.381 0.05 0.00 40.02 3.41 R
6220 9493 1.800805 ATGACGTGAACTGCTTCAGG 58.199 50.000 0.00 6.80 44.50 3.86 R
7939 11793 0.108329 CGGTCCCTAACAAGTGCGAT 60.108 55.000 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.412343 CCCCCGCTCCATTTTTATTGG 59.588 52.381 0.00 0.00 35.45 3.16
107 108 7.716799 TTTTATTGGTGAAGCAATCCATAGT 57.283 32.000 10.78 0.00 0.00 2.12
108 109 6.698008 TTATTGGTGAAGCAATCCATAGTG 57.302 37.500 10.78 0.00 0.00 2.74
118 119 7.231317 TGAAGCAATCCATAGTGTTCTTTTTCT 59.769 33.333 0.00 0.00 0.00 2.52
122 123 7.308830 GCAATCCATAGTGTTCTTTTTCTGAGT 60.309 37.037 0.00 0.00 0.00 3.41
144 145 9.256228 TGAGTAGAAAGATATGTACTCAAACCT 57.744 33.333 10.70 0.00 45.25 3.50
145 146 9.738832 GAGTAGAAAGATATGTACTCAAACCTC 57.261 37.037 6.72 0.00 40.69 3.85
170 409 6.524101 TTGCTACAAGTCTTTTGGTTTTCT 57.476 33.333 0.00 0.00 0.00 2.52
205 444 7.875327 TCTACACCTTTTTATGCTAATTCCC 57.125 36.000 0.00 0.00 0.00 3.97
252 491 8.500837 TTCAAGAGCACGTAACATTTTAATTG 57.499 30.769 0.00 0.00 0.00 2.32
336 575 8.526147 GTTAAGAACTAGTGGTGGTCATACTAA 58.474 37.037 0.00 0.00 0.00 2.24
462 706 8.459521 TTTTATTGCTTGTAAACGATGATTGG 57.540 30.769 0.00 0.00 0.00 3.16
514 758 1.057851 TTCCCACCCCTCTTCAACGT 61.058 55.000 0.00 0.00 0.00 3.99
534 778 8.701540 TCAACGTGAATCAAAATCATTGAAATG 58.298 29.630 0.00 0.00 37.75 2.32
568 816 3.600448 ACATATGTTCCTCCCCCATTG 57.400 47.619 1.41 0.00 0.00 2.82
569 817 2.858768 ACATATGTTCCTCCCCCATTGT 59.141 45.455 1.41 0.00 0.00 2.71
570 818 3.225104 CATATGTTCCTCCCCCATTGTG 58.775 50.000 0.00 0.00 0.00 3.33
588 836 6.873605 CCATTGTGTAATCTTATATCTCGGCA 59.126 38.462 0.00 0.00 0.00 5.69
652 900 5.458452 CGTCACATGTTTATTGTTTGCACTT 59.542 36.000 0.00 0.00 0.00 3.16
664 912 3.563808 TGTTTGCACTTTAGTCGATGCTT 59.436 39.130 7.83 0.00 38.90 3.91
728 976 0.391263 CGGCCTTTATATCTCCCGCC 60.391 60.000 0.00 0.00 0.00 6.13
730 978 0.690762 GCCTTTATATCTCCCGCCCA 59.309 55.000 0.00 0.00 0.00 5.36
737 985 1.580059 TATCTCCCGCCCACTTTTCT 58.420 50.000 0.00 0.00 0.00 2.52
741 989 2.361230 CCGCCCACTTTTCTCCCC 60.361 66.667 0.00 0.00 0.00 4.81
765 1013 0.905357 ACATATCCCATCGCCCTAGC 59.095 55.000 0.00 0.00 0.00 3.42
796 1044 4.899239 GGCTCCCACCGCATCTCG 62.899 72.222 0.00 0.00 38.08 4.04
880 1130 1.678970 AGGCAAATCCCAACCTCGC 60.679 57.895 0.00 0.00 34.51 5.03
1036 1441 8.150296 CCAATTCCTTACCTTTTGTTTTCTCAT 58.850 33.333 0.00 0.00 0.00 2.90
1059 1464 8.845227 TCATCTAGTTAACTGCAATTTTGTCAA 58.155 29.630 18.56 0.00 0.00 3.18
1133 1539 1.742268 GCTGGCAAGTCTTGAGGAATC 59.258 52.381 16.99 0.00 0.00 2.52
1282 1697 5.389516 CGTCTTCGCTTTATTTGCTACTTGT 60.390 40.000 0.00 0.00 0.00 3.16
1300 1715 7.722285 GCTACTTGTTATACCAATTAATCCCCA 59.278 37.037 0.00 0.00 0.00 4.96
1368 1783 0.321653 ATTCTCCAACGCACTCCACC 60.322 55.000 0.00 0.00 0.00 4.61
1380 1795 0.317479 ACTCCACCGTAAGTCTGTGC 59.683 55.000 0.00 0.00 31.43 4.57
1412 1827 1.522569 GCCAGCCATCTAACGGACT 59.477 57.895 0.00 0.00 0.00 3.85
1423 1838 2.492088 TCTAACGGACTCACATGTCAGG 59.508 50.000 0.55 0.00 38.61 3.86
1432 1847 3.213506 CTCACATGTCAGGGACACAAAA 58.786 45.455 0.00 0.00 45.65 2.44
1462 1881 6.567602 AGCAGTAAGTTAGAGGATCCAAAT 57.432 37.500 15.82 1.21 33.66 2.32
1469 1888 2.338577 AGAGGATCCAAATCGCCAAG 57.661 50.000 15.82 0.00 33.66 3.61
1529 1949 2.102633 GAGTACAATCGAAGTCGCTCG 58.897 52.381 0.00 0.00 40.25 5.03
1533 1953 1.202256 ACAATCGAAGTCGCTCGCATA 60.202 47.619 0.00 0.00 38.73 3.14
1534 1954 2.054363 CAATCGAAGTCGCTCGCATAT 58.946 47.619 0.00 0.00 38.73 1.78
1538 1958 2.096367 TCGAAGTCGCTCGCATATACTC 60.096 50.000 0.00 0.00 38.73 2.59
1540 1960 2.690173 AGTCGCTCGCATATACTCAC 57.310 50.000 0.00 0.00 0.00 3.51
1547 1967 4.571176 CGCTCGCATATACTCACTCCTATA 59.429 45.833 0.00 0.00 0.00 1.31
1550 1970 6.748198 GCTCGCATATACTCACTCCTATAAAC 59.252 42.308 0.00 0.00 0.00 2.01
1555 1975 5.847111 ATACTCACTCCTATAAACGCACA 57.153 39.130 0.00 0.00 0.00 4.57
1558 1978 3.581755 TCACTCCTATAAACGCACACAC 58.418 45.455 0.00 0.00 0.00 3.82
1579 1999 3.622627 GCAAATTCTGCCTCTATGAGC 57.377 47.619 2.35 0.00 46.13 4.26
1580 2000 2.947652 GCAAATTCTGCCTCTATGAGCA 59.052 45.455 0.00 0.00 46.13 4.26
1581 2001 3.568853 GCAAATTCTGCCTCTATGAGCAT 59.431 43.478 0.00 0.00 46.13 3.79
1582 2002 4.758674 GCAAATTCTGCCTCTATGAGCATA 59.241 41.667 0.00 0.00 46.13 3.14
1583 2003 5.415077 GCAAATTCTGCCTCTATGAGCATAT 59.585 40.000 0.00 0.00 46.13 1.78
1584 2004 6.403418 GCAAATTCTGCCTCTATGAGCATATC 60.403 42.308 0.00 0.00 46.13 1.63
1585 2005 4.815533 TTCTGCCTCTATGAGCATATCC 57.184 45.455 0.00 0.00 38.56 2.59
1586 2006 2.757314 TCTGCCTCTATGAGCATATCCG 59.243 50.000 0.00 0.00 38.56 4.18
1587 2007 2.757314 CTGCCTCTATGAGCATATCCGA 59.243 50.000 0.00 0.00 38.56 4.55
1588 2008 3.369175 TGCCTCTATGAGCATATCCGAT 58.631 45.455 0.00 0.00 33.08 4.18
1589 2009 4.536765 TGCCTCTATGAGCATATCCGATA 58.463 43.478 0.00 0.00 33.08 2.92
1621 2041 5.797051 TGACACATCATCTTGAGATTGACA 58.203 37.500 0.90 0.00 31.21 3.58
1627 2047 6.091849 ACATCATCTTGAGATTGACAAAGTCG 59.908 38.462 0.00 0.00 31.57 4.18
1628 2048 4.389992 TCATCTTGAGATTGACAAAGTCGC 59.610 41.667 0.00 0.00 31.57 5.19
1629 2049 3.995199 TCTTGAGATTGACAAAGTCGCT 58.005 40.909 0.00 0.00 34.95 4.93
1633 2053 4.820897 TGAGATTGACAAAGTCGCTACAT 58.179 39.130 0.00 0.00 34.95 2.29
1641 2061 4.553323 ACAAAGTCGCTACATACGTCTTT 58.447 39.130 0.00 3.27 45.21 2.52
1642 2062 5.702865 ACAAAGTCGCTACATACGTCTTTA 58.297 37.500 0.00 0.00 43.49 1.85
1648 2068 7.130917 AGTCGCTACATACGTCTTTATAGTTG 58.869 38.462 0.00 0.00 0.00 3.16
1681 2101 0.439985 CTTCCACTGAACGCACATCG 59.560 55.000 0.00 0.00 45.38 3.84
1684 2104 2.029288 CACTGAACGCACATCGCCT 61.029 57.895 0.00 0.00 43.23 5.52
1686 2106 0.736325 ACTGAACGCACATCGCCTAC 60.736 55.000 0.00 0.00 43.23 3.18
1688 2108 0.108377 TGAACGCACATCGCCTACAT 60.108 50.000 0.00 0.00 43.23 2.29
1690 2110 0.108377 AACGCACATCGCCTACATGA 60.108 50.000 0.00 0.00 43.23 3.07
1691 2111 0.108377 ACGCACATCGCCTACATGAA 60.108 50.000 0.00 0.00 43.23 2.57
1692 2112 1.006086 CGCACATCGCCTACATGAAA 58.994 50.000 0.00 0.00 37.30 2.69
1693 2113 1.599071 CGCACATCGCCTACATGAAAT 59.401 47.619 0.00 0.00 37.30 2.17
1698 2118 6.208644 GCACATCGCCTACATGAAATAAATT 58.791 36.000 0.00 0.00 32.94 1.82
1699 2119 6.360681 GCACATCGCCTACATGAAATAAATTC 59.639 38.462 0.00 0.00 34.78 2.17
1726 2151 4.731667 CGAGCAGCAACGTCAATG 57.268 55.556 0.00 0.00 0.00 2.82
1727 2152 1.862123 CGAGCAGCAACGTCAATGT 59.138 52.632 0.00 0.00 0.00 2.71
1728 2153 0.179240 CGAGCAGCAACGTCAATGTC 60.179 55.000 0.00 0.00 0.00 3.06
1729 2154 0.867746 GAGCAGCAACGTCAATGTCA 59.132 50.000 0.00 0.00 0.00 3.58
1730 2155 1.264020 GAGCAGCAACGTCAATGTCAA 59.736 47.619 0.00 0.00 0.00 3.18
1731 2156 1.265095 AGCAGCAACGTCAATGTCAAG 59.735 47.619 0.00 0.00 0.00 3.02
1732 2157 1.002468 GCAGCAACGTCAATGTCAAGT 60.002 47.619 0.00 0.00 0.00 3.16
1733 2158 2.541588 GCAGCAACGTCAATGTCAAGTT 60.542 45.455 0.00 0.00 0.00 2.66
1754 2179 1.003580 TGGGACTTGAAGACTGATGGC 59.996 52.381 0.00 0.00 0.00 4.40
1760 2185 1.500474 TGAAGACTGATGGCTAGGGG 58.500 55.000 0.00 0.00 0.00 4.79
1777 2202 2.196319 GGATACCACCGTTCTCCGT 58.804 57.895 0.00 0.00 33.66 4.69
1778 2203 0.101939 GGATACCACCGTTCTCCGTC 59.898 60.000 0.00 0.00 33.66 4.79
1781 2211 1.526575 TACCACCGTTCTCCGTCCAC 61.527 60.000 0.00 0.00 33.66 4.02
1787 2217 3.691342 TTCTCCGTCCACCCGCAG 61.691 66.667 0.00 0.00 0.00 5.18
1818 2248 2.417239 GCACGACCATTTCCGTATGAAA 59.583 45.455 0.00 0.00 46.54 2.69
1844 3424 3.528370 CGCGGTCCGGGAAGAGAT 61.528 66.667 23.09 0.00 42.31 2.75
1845 3425 2.901042 GCGGTCCGGGAAGAGATT 59.099 61.111 14.38 0.00 0.00 2.40
1847 3427 0.810426 GCGGTCCGGGAAGAGATTTC 60.810 60.000 14.38 0.00 0.00 2.17
1851 3431 3.010420 GGTCCGGGAAGAGATTTCTTTG 58.990 50.000 0.00 0.00 43.63 2.77
1962 3549 4.988598 AACGGGGCGAGCACTGTG 62.989 66.667 13.02 2.76 38.11 3.66
1977 3822 1.942657 ACTGTGCGAATCATACATGCC 59.057 47.619 0.00 0.00 0.00 4.40
2064 3919 1.595882 CAGTCAGCCAGTCAGGAGG 59.404 63.158 0.00 0.00 41.22 4.30
2138 4001 3.463944 TCCTTTTTCTGACCTCGTTCAC 58.536 45.455 0.00 0.00 0.00 3.18
2265 4135 1.798087 CCGGTCGCCACATTAAACC 59.202 57.895 0.00 0.00 0.00 3.27
2266 4136 1.422269 CGGTCGCCACATTAAACCG 59.578 57.895 0.00 0.00 45.79 4.44
2267 4137 1.135939 GGTCGCCACATTAAACCGC 59.864 57.895 0.00 0.00 0.00 5.68
2268 4138 1.579084 GGTCGCCACATTAAACCGCA 61.579 55.000 0.00 0.00 0.00 5.69
2269 4139 0.238817 GTCGCCACATTAAACCGCAA 59.761 50.000 0.00 0.00 0.00 4.85
2270 4140 0.238817 TCGCCACATTAAACCGCAAC 59.761 50.000 0.00 0.00 0.00 4.17
2271 4141 0.239879 CGCCACATTAAACCGCAACT 59.760 50.000 0.00 0.00 0.00 3.16
2272 4142 1.696988 GCCACATTAAACCGCAACTG 58.303 50.000 0.00 0.00 0.00 3.16
2273 4143 1.696988 CCACATTAAACCGCAACTGC 58.303 50.000 0.00 0.00 37.78 4.40
2274 4144 1.269448 CCACATTAAACCGCAACTGCT 59.731 47.619 0.00 0.00 39.32 4.24
2275 4145 2.584791 CACATTAAACCGCAACTGCTC 58.415 47.619 0.00 0.00 39.32 4.26
2276 4146 1.539827 ACATTAAACCGCAACTGCTCC 59.460 47.619 0.00 0.00 39.32 4.70
2277 4147 0.802494 ATTAAACCGCAACTGCTCCG 59.198 50.000 0.00 0.00 39.32 4.63
2278 4148 1.847890 TTAAACCGCAACTGCTCCGC 61.848 55.000 0.00 0.00 39.32 5.54
2291 4161 3.709880 CTCCGCCGTCGCCACATTA 62.710 63.158 0.00 0.00 0.00 1.90
2292 4162 2.816083 CCGCCGTCGCCACATTAA 60.816 61.111 0.00 0.00 0.00 1.40
2293 4163 2.392181 CCGCCGTCGCCACATTAAA 61.392 57.895 0.00 0.00 0.00 1.52
2294 4164 1.225908 CGCCGTCGCCACATTAAAC 60.226 57.895 0.00 0.00 0.00 2.01
2295 4165 1.135939 GCCGTCGCCACATTAAACC 59.864 57.895 0.00 0.00 0.00 3.27
2326 4196 2.180204 CCGTCGCCAAGGCCATTAG 61.180 63.158 5.01 0.00 37.98 1.73
2407 4290 1.658686 GCGGTCGTGTGGAGAGAGAT 61.659 60.000 0.00 0.00 0.00 2.75
2408 4291 1.664873 CGGTCGTGTGGAGAGAGATA 58.335 55.000 0.00 0.00 0.00 1.98
2409 4292 1.331138 CGGTCGTGTGGAGAGAGATAC 59.669 57.143 0.00 0.00 0.00 2.24
2478 4361 4.785453 CAACAGCCTCGGGGAGCC 62.785 72.222 4.80 0.00 33.58 4.70
2572 4455 1.675415 CCTTCACTCTGCCTCTTGCTC 60.675 57.143 0.00 0.00 42.00 4.26
2582 4465 3.718210 CTCTTGCTCCCGTACGGCC 62.718 68.421 29.15 18.23 0.00 6.13
2604 4487 0.318441 CTGTCCGTCTCTTGCTTCCA 59.682 55.000 0.00 0.00 0.00 3.53
2676 4562 1.792118 AAACGGGCCTGCGTCTTTTC 61.792 55.000 12.89 0.00 0.00 2.29
2682 4570 1.021920 GCCTGCGTCTTTTCTCTCCC 61.022 60.000 0.00 0.00 0.00 4.30
2685 4573 0.243907 TGCGTCTTTTCTCTCCCTCG 59.756 55.000 0.00 0.00 0.00 4.63
2701 4589 0.036294 CTCGGTTCCTCCAAACCCTC 60.036 60.000 0.45 0.00 44.93 4.30
2710 4598 2.398554 CCAAACCCTCATCGCACGG 61.399 63.158 0.00 0.00 0.00 4.94
2772 4660 1.472728 GGCCTAATCGTTCGGTGTGAT 60.473 52.381 0.00 0.00 0.00 3.06
2785 4673 6.564312 CGTTCGGTGTGATCTACTGACTATAG 60.564 46.154 10.50 0.00 33.41 1.31
2841 4729 3.492482 GGTGCTAAGCTCCTCTCAATCTC 60.492 52.174 0.00 0.00 38.91 2.75
2942 4833 1.302383 CCAACGCGGCTCACCAAATA 61.302 55.000 12.47 0.00 34.57 1.40
3171 5070 4.680110 CGATATGTTGGTCGACATAGGAAC 59.320 45.833 18.91 11.40 43.53 3.62
3360 5268 4.033684 CGACTGGTACATTCTTACGCTAC 58.966 47.826 0.00 0.00 38.20 3.58
3458 5381 8.492673 TGTGTATTCAACATTCTAACTGGATC 57.507 34.615 0.00 0.00 41.10 3.36
3723 5648 4.701651 CCATTCATTTAGAACCAGTGAGCA 59.298 41.667 0.00 0.00 39.49 4.26
4146 6109 1.671054 GGAGCAGCGCTTGGTTGTA 60.671 57.895 7.50 0.00 39.88 2.41
4147 6110 1.026718 GGAGCAGCGCTTGGTTGTAT 61.027 55.000 7.50 0.00 39.88 2.29
4338 6304 0.454600 CAAGCATGCACCACCTGATC 59.545 55.000 21.98 0.00 0.00 2.92
4425 6806 5.689383 TCTTCAACCTTCATGTAACTTGC 57.311 39.130 0.00 0.00 0.00 4.01
4490 6875 3.128242 CAGCCAATGTCCAGCTAAAGAAG 59.872 47.826 0.00 0.00 34.38 2.85
4503 6888 4.995487 AGCTAAAGAAGTTTCGGTCGATTT 59.005 37.500 0.00 0.00 0.00 2.17
4620 7005 5.123979 GGTATGCGATCTTTCTTCAACCTTT 59.876 40.000 0.00 0.00 0.00 3.11
4626 7011 6.915843 GCGATCTTTCTTCAACCTTTTTGTTA 59.084 34.615 0.00 0.00 0.00 2.41
4705 7090 5.823570 TGTCCAACTAAAGAAATTTCGGTCA 59.176 36.000 12.42 7.10 0.00 4.02
4722 7107 3.119029 CGGTCAATTGCCAAATGGAAGAT 60.119 43.478 16.01 0.00 37.39 2.40
5186 8424 4.834496 TCAAATTCTTCTTTGCCTGGACAT 59.166 37.500 0.00 0.00 36.32 3.06
5217 8455 2.270352 TGCATTCTTTCTTCACCCGT 57.730 45.000 0.00 0.00 0.00 5.28
5237 8475 3.619733 CGTCTTGGAGATGGTTCCATTCA 60.620 47.826 5.77 3.28 46.22 2.57
5370 8611 4.573900 CAAGTAGATCAGCTGAACACCTT 58.426 43.478 22.50 19.02 0.00 3.50
5481 8723 4.456911 CACTGTGTTTCATCATTACAGCCT 59.543 41.667 0.00 0.00 41.74 4.58
5582 8824 3.942748 TCAATGGGTTTTGCTCGGTATAC 59.057 43.478 0.00 0.00 0.00 1.47
5701 8950 4.872691 AGAGCTTTTGGATGTATCTGAACG 59.127 41.667 0.00 0.00 0.00 3.95
6173 9445 2.364632 CACTTCCATTTATCCGTGGCA 58.635 47.619 0.00 0.00 35.43 4.92
6332 9605 2.414785 CCCAGGCCCGGAAATTTCG 61.415 63.158 6.57 7.44 0.00 3.46
6520 9802 5.009410 CCTTATGCATCAGTTCAGGGAATTC 59.991 44.000 0.19 0.00 0.00 2.17
6563 9845 5.959583 AAGGTTTGGGAATTGGTTTACAA 57.040 34.783 0.00 0.00 44.54 2.41
6738 10395 1.743394 GGGGTGCTAAACAGATTTCCG 59.257 52.381 0.00 0.00 0.00 4.30
6840 10498 4.396166 GGAGCATTTGAGAAATCGAGGAAA 59.604 41.667 0.00 0.00 0.00 3.13
6901 10559 6.070656 TCTTTTGAAGTGTCATTTCCCTGAT 58.929 36.000 5.70 0.00 32.48 2.90
7196 11003 3.567397 AGCGGAGGTGTACTTCATCTAT 58.433 45.455 0.00 0.00 37.67 1.98
7419 11244 1.225664 GCTTTTCGCTCGCGTTACC 60.226 57.895 5.77 0.00 40.74 2.85
7424 11249 2.537792 TTCGCTCGCGTTACCAGAGG 62.538 60.000 5.77 0.00 40.74 3.69
7457 11289 2.136791 CCCCCACATGAGTAGCGAT 58.863 57.895 0.00 0.00 0.00 4.58
7516 11354 0.974383 CCCGTTAGGCTATAGGGTGG 59.026 60.000 20.60 6.86 37.36 4.61
7517 11355 1.713297 CCGTTAGGCTATAGGGTGGT 58.287 55.000 1.04 0.00 0.00 4.16
7533 11382 2.990514 GGTGGTGTGTTTGTTGTTGTTC 59.009 45.455 0.00 0.00 0.00 3.18
7573 11427 7.307694 TCGTTTAGCAGATTTTTAGTACTCGA 58.692 34.615 0.00 0.00 0.00 4.04
7574 11428 7.972277 TCGTTTAGCAGATTTTTAGTACTCGAT 59.028 33.333 0.00 0.00 0.00 3.59
7604 11458 3.758973 TTTCGCGGTGTGGAAGGCA 62.759 57.895 6.13 0.00 0.00 4.75
7605 11459 3.758973 TTCGCGGTGTGGAAGGCAA 62.759 57.895 6.13 0.00 0.00 4.52
7648 11502 2.391724 TTTGGCGGTGACTGAGACCC 62.392 60.000 0.00 0.00 0.00 4.46
7650 11504 4.083862 GCGGTGACTGAGACCCCC 62.084 72.222 0.00 0.00 0.00 5.40
7701 11555 5.163311 TGGATTGTCAACTCTGAAGAAGTCA 60.163 40.000 0.00 0.00 31.88 3.41
7711 11565 5.757320 ACTCTGAAGAAGTCATCAACTGTTG 59.243 40.000 14.24 14.24 38.58 3.33
7718 11572 0.443478 TCATCAACTGTTGCATCGCG 59.557 50.000 15.52 0.00 0.00 5.87
7719 11573 0.521867 CATCAACTGTTGCATCGCGG 60.522 55.000 15.52 0.00 0.00 6.46
7720 11574 2.257286 ATCAACTGTTGCATCGCGGC 62.257 55.000 15.52 2.62 0.00 6.53
7771 11625 5.060506 TGTTCCTTGCATCTTTCTTTCGTA 58.939 37.500 0.00 0.00 0.00 3.43
7772 11626 5.705441 TGTTCCTTGCATCTTTCTTTCGTAT 59.295 36.000 0.00 0.00 0.00 3.06
7773 11627 6.206634 TGTTCCTTGCATCTTTCTTTCGTATT 59.793 34.615 0.00 0.00 0.00 1.89
7774 11628 6.817765 TCCTTGCATCTTTCTTTCGTATTT 57.182 33.333 0.00 0.00 0.00 1.40
7775 11629 6.842163 TCCTTGCATCTTTCTTTCGTATTTC 58.158 36.000 0.00 0.00 0.00 2.17
7776 11630 5.734498 CCTTGCATCTTTCTTTCGTATTTCG 59.266 40.000 0.00 0.00 41.41 3.46
7777 11631 5.856126 TGCATCTTTCTTTCGTATTTCGT 57.144 34.783 0.00 0.00 40.80 3.85
7791 11645 6.744418 TCGTATTTCGTTAGTCAAATTGACG 58.256 36.000 18.99 9.23 44.86 4.35
7813 11667 7.705325 TGACGATTTAGAACTATTGAAGTAGCC 59.295 37.037 0.00 0.00 37.50 3.93
7814 11668 7.783042 ACGATTTAGAACTATTGAAGTAGCCT 58.217 34.615 0.00 0.00 37.50 4.58
7820 11674 5.122396 AGAACTATTGAAGTAGCCTTTTGCG 59.878 40.000 0.00 0.00 41.07 4.85
7830 11684 0.594796 GCCTTTTGCGGTCACACTTG 60.595 55.000 0.00 0.00 0.00 3.16
7840 11694 4.081917 TGCGGTCACACTTGATAGTATTGA 60.082 41.667 0.00 0.00 33.11 2.57
7842 11696 5.523916 GCGGTCACACTTGATAGTATTGAAT 59.476 40.000 0.00 0.00 33.11 2.57
7843 11697 6.700081 GCGGTCACACTTGATAGTATTGAATA 59.300 38.462 0.00 0.00 33.11 1.75
7844 11698 7.385205 GCGGTCACACTTGATAGTATTGAATAT 59.615 37.037 0.00 0.00 33.11 1.28
7859 11713 9.030452 AGTATTGAATATTAGCTACTCCCTCTG 57.970 37.037 0.00 0.00 0.00 3.35
7860 11714 7.863901 ATTGAATATTAGCTACTCCCTCTGT 57.136 36.000 0.00 0.00 0.00 3.41
7861 11715 6.902771 TGAATATTAGCTACTCCCTCTGTC 57.097 41.667 0.00 0.00 0.00 3.51
7863 11717 6.717540 TGAATATTAGCTACTCCCTCTGTCTC 59.282 42.308 0.00 0.00 0.00 3.36
7864 11718 4.528076 ATTAGCTACTCCCTCTGTCTCA 57.472 45.455 0.00 0.00 0.00 3.27
7865 11719 4.528076 TTAGCTACTCCCTCTGTCTCAT 57.472 45.455 0.00 0.00 0.00 2.90
7866 11720 5.648330 TTAGCTACTCCCTCTGTCTCATA 57.352 43.478 0.00 0.00 0.00 2.15
7867 11721 4.528076 AGCTACTCCCTCTGTCTCATAA 57.472 45.455 0.00 0.00 0.00 1.90
7868 11722 5.073437 AGCTACTCCCTCTGTCTCATAAT 57.927 43.478 0.00 0.00 0.00 1.28
7870 11724 6.799827 AGCTACTCCCTCTGTCTCATAATAT 58.200 40.000 0.00 0.00 0.00 1.28
7872 11726 8.394822 AGCTACTCCCTCTGTCTCATAATATAA 58.605 37.037 0.00 0.00 0.00 0.98
7873 11727 8.682710 GCTACTCCCTCTGTCTCATAATATAAG 58.317 40.741 0.00 0.00 0.00 1.73
7874 11728 9.967451 CTACTCCCTCTGTCTCATAATATAAGA 57.033 37.037 0.00 0.00 0.00 2.10
7875 11729 8.877864 ACTCCCTCTGTCTCATAATATAAGAG 57.122 38.462 0.00 0.00 0.00 2.85
7876 11730 8.452868 ACTCCCTCTGTCTCATAATATAAGAGT 58.547 37.037 0.00 0.00 0.00 3.24
7877 11731 8.642935 TCCCTCTGTCTCATAATATAAGAGTG 57.357 38.462 0.00 0.00 0.00 3.51
7878 11732 8.228206 TCCCTCTGTCTCATAATATAAGAGTGT 58.772 37.037 0.00 0.00 0.00 3.55
7915 11769 9.965824 AAAACGCTTTTATATTATGGAATGGAG 57.034 29.630 0.00 0.00 0.00 3.86
7916 11770 7.687941 ACGCTTTTATATTATGGAATGGAGG 57.312 36.000 0.00 0.00 0.00 4.30
7917 11771 6.659242 ACGCTTTTATATTATGGAATGGAGGG 59.341 38.462 0.00 0.00 0.00 4.30
7918 11772 6.884295 CGCTTTTATATTATGGAATGGAGGGA 59.116 38.462 0.00 0.00 0.00 4.20
7919 11773 7.066284 CGCTTTTATATTATGGAATGGAGGGAG 59.934 40.741 0.00 0.00 0.00 4.30
7920 11774 7.890655 GCTTTTATATTATGGAATGGAGGGAGT 59.109 37.037 0.00 0.00 0.00 3.85
7923 11777 9.852784 TTTATATTATGGAATGGAGGGAGTAGA 57.147 33.333 0.00 0.00 0.00 2.59
7924 11778 9.852784 TTATATTATGGAATGGAGGGAGTAGAA 57.147 33.333 0.00 0.00 0.00 2.10
7925 11779 8.757307 ATATTATGGAATGGAGGGAGTAGAAA 57.243 34.615 0.00 0.00 0.00 2.52
7926 11780 6.901615 TTATGGAATGGAGGGAGTAGAAAA 57.098 37.500 0.00 0.00 0.00 2.29
7927 11781 7.465900 TTATGGAATGGAGGGAGTAGAAAAT 57.534 36.000 0.00 0.00 0.00 1.82
7928 11782 8.575736 TTATGGAATGGAGGGAGTAGAAAATA 57.424 34.615 0.00 0.00 0.00 1.40
7929 11783 6.500589 TGGAATGGAGGGAGTAGAAAATAG 57.499 41.667 0.00 0.00 0.00 1.73
7930 11784 6.209774 TGGAATGGAGGGAGTAGAAAATAGA 58.790 40.000 0.00 0.00 0.00 1.98
7931 11785 6.099845 TGGAATGGAGGGAGTAGAAAATAGAC 59.900 42.308 0.00 0.00 0.00 2.59
7932 11786 6.327887 GGAATGGAGGGAGTAGAAAATAGACT 59.672 42.308 0.00 0.00 0.00 3.24
7933 11787 6.987403 ATGGAGGGAGTAGAAAATAGACTC 57.013 41.667 0.00 0.00 39.12 3.36
7934 11788 6.093617 TGGAGGGAGTAGAAAATAGACTCT 57.906 41.667 0.00 0.00 39.66 3.24
7935 11789 7.222180 TGGAGGGAGTAGAAAATAGACTCTA 57.778 40.000 0.00 0.00 39.66 2.43
7936 11790 7.649715 TGGAGGGAGTAGAAAATAGACTCTAA 58.350 38.462 0.00 0.00 39.66 2.10
7937 11791 8.120538 TGGAGGGAGTAGAAAATAGACTCTAAA 58.879 37.037 0.00 0.00 39.66 1.85
7938 11792 8.415553 GGAGGGAGTAGAAAATAGACTCTAAAC 58.584 40.741 0.00 0.00 39.66 2.01
7939 11793 8.896722 AGGGAGTAGAAAATAGACTCTAAACA 57.103 34.615 0.00 0.00 39.66 2.83
7940 11794 9.495382 AGGGAGTAGAAAATAGACTCTAAACAT 57.505 33.333 0.00 0.00 39.66 2.71
7941 11795 9.752961 GGGAGTAGAAAATAGACTCTAAACATC 57.247 37.037 0.00 0.00 39.66 3.06
7942 11796 9.453325 GGAGTAGAAAATAGACTCTAAACATCG 57.547 37.037 0.00 0.00 39.66 3.84
7943 11797 8.859517 AGTAGAAAATAGACTCTAAACATCGC 57.140 34.615 0.00 0.00 0.00 4.58
7944 11798 8.467598 AGTAGAAAATAGACTCTAAACATCGCA 58.532 33.333 0.00 0.00 0.00 5.10
7945 11799 7.527084 AGAAAATAGACTCTAAACATCGCAC 57.473 36.000 0.00 0.00 0.00 5.34
7946 11800 7.324178 AGAAAATAGACTCTAAACATCGCACT 58.676 34.615 0.00 0.00 0.00 4.40
7947 11801 7.819900 AGAAAATAGACTCTAAACATCGCACTT 59.180 33.333 0.00 0.00 0.00 3.16
7948 11802 6.893958 AATAGACTCTAAACATCGCACTTG 57.106 37.500 0.00 0.00 0.00 3.16
7949 11803 4.258702 AGACTCTAAACATCGCACTTGT 57.741 40.909 0.00 0.00 0.00 3.16
7950 11804 4.632153 AGACTCTAAACATCGCACTTGTT 58.368 39.130 0.00 0.00 38.91 2.83
7951 11805 5.779922 AGACTCTAAACATCGCACTTGTTA 58.220 37.500 0.00 0.00 36.32 2.41
7952 11806 5.864474 AGACTCTAAACATCGCACTTGTTAG 59.136 40.000 0.00 0.00 36.32 2.34
8030 11884 4.389374 CTCTACAAAAGTCAGAGGCCAAA 58.611 43.478 5.01 0.00 33.61 3.28
8088 11942 1.052617 TCCATTCAACCGACTCACCA 58.947 50.000 0.00 0.00 0.00 4.17
8092 11946 0.948623 TTCAACCGACTCACCATGCG 60.949 55.000 0.00 0.00 0.00 4.73
8115 11969 0.169009 GCTGGACGCAAACATTCTCC 59.831 55.000 0.00 0.00 38.92 3.71
8124 11978 4.764823 ACGCAAACATTCTCCCTTTTGATA 59.235 37.500 0.00 0.00 31.79 2.15
8173 12032 1.262683 GCGACAAAGATATCCTGCTGC 59.737 52.381 0.00 0.00 0.00 5.25
8185 12044 1.228063 CTGCTGCCTTGTGACCTGT 60.228 57.895 0.00 0.00 0.00 4.00
8207 12066 1.999051 CAGGCATAAGCGACGACAC 59.001 57.895 0.00 0.00 43.41 3.67
8209 12068 0.736325 AGGCATAAGCGACGACACAC 60.736 55.000 0.00 0.00 43.41 3.82
8231 12090 2.254546 ACATTCCACGACTTTGCTCA 57.745 45.000 0.00 0.00 0.00 4.26
8232 12091 2.783135 ACATTCCACGACTTTGCTCAT 58.217 42.857 0.00 0.00 0.00 2.90
8234 12093 3.935203 ACATTCCACGACTTTGCTCATAG 59.065 43.478 0.00 0.00 0.00 2.23
8258 12117 3.648067 TCAATCCCAGTGGAGGCTAATAG 59.352 47.826 11.95 0.00 46.08 1.73
8279 12138 1.632920 TCCCCAACTGACATGCACATA 59.367 47.619 0.00 0.00 0.00 2.29
8305 12164 1.470979 CCGACTAGCAAACCGCACTAT 60.471 52.381 0.00 0.00 46.13 2.12
8306 12165 2.268298 CGACTAGCAAACCGCACTATT 58.732 47.619 0.00 0.00 46.13 1.73
8307 12166 2.671396 CGACTAGCAAACCGCACTATTT 59.329 45.455 0.00 0.00 46.13 1.40
8317 12176 5.401531 AACCGCACTATTTCTACTCAGAA 57.598 39.130 0.00 0.00 39.06 3.02
8318 12177 5.000012 ACCGCACTATTTCTACTCAGAAG 58.000 43.478 0.00 0.00 41.75 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.089106 TGGATTCATATCATATCCACAACCA 57.911 36.000 0.00 0.00 42.10 3.67
75 76 3.859386 GCTTCACCAATAAAAATGGAGCG 59.141 43.478 0.00 0.00 40.56 5.03
79 80 6.171921 TGGATTGCTTCACCAATAAAAATGG 58.828 36.000 0.00 0.00 43.84 3.16
91 92 5.886960 AAGAACACTATGGATTGCTTCAC 57.113 39.130 0.00 0.00 0.00 3.18
118 119 9.256228 AGGTTTGAGTACATATCTTTCTACTCA 57.744 33.333 0.00 2.88 42.05 3.41
128 129 7.764443 TGTAGCAAAGAGGTTTGAGTACATATC 59.236 37.037 2.05 0.00 45.22 1.63
139 140 6.405842 CCAAAAGACTTGTAGCAAAGAGGTTT 60.406 38.462 0.00 0.00 0.00 3.27
140 141 5.067805 CCAAAAGACTTGTAGCAAAGAGGTT 59.932 40.000 0.00 0.00 0.00 3.50
141 142 4.580580 CCAAAAGACTTGTAGCAAAGAGGT 59.419 41.667 0.00 0.00 0.00 3.85
144 145 6.524101 AAACCAAAAGACTTGTAGCAAAGA 57.476 33.333 0.00 0.00 0.00 2.52
145 146 7.035612 AGAAAACCAAAAGACTTGTAGCAAAG 58.964 34.615 0.00 0.00 0.00 2.77
229 468 7.803189 ACTCAATTAAAATGTTACGTGCTCTTG 59.197 33.333 0.00 0.00 0.00 3.02
287 526 2.094675 CCCCTTAGACTTGCATGGTTG 58.905 52.381 4.44 0.00 0.00 3.77
336 575 3.217626 GGCATTAAGACATAGGCAAGCT 58.782 45.455 0.00 0.00 0.00 3.74
428 672 9.388346 CGTTTACAAGCAATAAAATGAGTGTAA 57.612 29.630 0.00 0.00 33.22 2.41
462 706 3.262405 TGGTGAATGTACTTGGGTCCTAC 59.738 47.826 0.00 0.00 0.00 3.18
535 779 9.125026 GGAGGAACATATGTTTGAGTTATTGAT 57.875 33.333 21.63 0.00 38.56 2.57
554 798 2.891191 TTACACAATGGGGGAGGAAC 57.109 50.000 0.00 0.00 0.00 3.62
557 801 3.669939 AAGATTACACAATGGGGGAGG 57.330 47.619 0.00 0.00 0.00 4.30
558 802 7.922382 AGATATAAGATTACACAATGGGGGAG 58.078 38.462 0.00 0.00 0.00 4.30
568 816 8.534333 TGATTTGCCGAGATATAAGATTACAC 57.466 34.615 0.00 0.00 0.00 2.90
569 817 9.725019 ATTGATTTGCCGAGATATAAGATTACA 57.275 29.630 0.00 0.00 0.00 2.41
626 874 4.737279 TGCAAACAATAAACATGTGACGTG 59.263 37.500 0.00 2.72 0.00 4.49
652 900 2.736144 ACCGTTCAAGCATCGACTAA 57.264 45.000 0.00 0.00 0.00 2.24
664 912 5.057819 TCTTGTAGCAAATTGTACCGTTCA 58.942 37.500 0.00 0.00 0.00 3.18
728 976 0.605589 GTGGTCGGGGAGAAAAGTGG 60.606 60.000 0.00 0.00 0.00 4.00
730 978 1.064825 ATGTGGTCGGGGAGAAAAGT 58.935 50.000 0.00 0.00 0.00 2.66
737 985 0.104672 ATGGGATATGTGGTCGGGGA 60.105 55.000 0.00 0.00 0.00 4.81
741 989 0.670546 GGCGATGGGATATGTGGTCG 60.671 60.000 0.00 0.00 0.00 4.79
796 1044 5.593010 AGTTGGCTAGTTGTCTATTCGATC 58.407 41.667 0.00 0.00 0.00 3.69
880 1130 0.815213 CATGGCCACATAGTCACCGG 60.815 60.000 8.16 0.00 34.99 5.28
906 1156 1.135402 CACGTGGTCGAGATCATCACA 60.135 52.381 7.95 0.00 40.62 3.58
908 1158 0.455815 CCACGTGGTCGAGATCATCA 59.544 55.000 26.95 0.00 40.62 3.07
1036 1441 7.129622 CGTTGACAAAATTGCAGTTAACTAGA 58.870 34.615 8.04 0.00 31.84 2.43
1045 1450 5.173131 GGTAGAAACGTTGACAAAATTGCAG 59.827 40.000 0.00 0.00 0.00 4.41
1059 1464 4.866508 TGATGAGTGAAGGTAGAAACGT 57.133 40.909 0.00 0.00 0.00 3.99
1133 1539 1.115930 CCGGGGTATGTGAGAGAGGG 61.116 65.000 0.00 0.00 0.00 4.30
1282 1697 9.681839 ATTTGGAATGGGGATTAATTGGTATAA 57.318 29.630 0.00 0.00 0.00 0.98
1368 1783 0.389948 GTCAGGGGCACAGACTTACG 60.390 60.000 4.87 0.00 0.00 3.18
1412 1827 3.289407 TTTTGTGTCCCTGACATGTGA 57.711 42.857 1.15 0.00 44.63 3.58
1423 1838 2.365293 ACTGCTTTGGGATTTTGTGTCC 59.635 45.455 0.00 0.00 34.92 4.02
1432 1847 4.783227 TCCTCTAACTTACTGCTTTGGGAT 59.217 41.667 0.00 0.00 0.00 3.85
1436 1851 5.734720 TGGATCCTCTAACTTACTGCTTTG 58.265 41.667 14.23 0.00 0.00 2.77
1439 1854 6.567602 ATTTGGATCCTCTAACTTACTGCT 57.432 37.500 14.23 0.00 0.00 4.24
1440 1855 5.463724 CGATTTGGATCCTCTAACTTACTGC 59.536 44.000 14.23 0.00 0.00 4.40
1441 1856 5.463724 GCGATTTGGATCCTCTAACTTACTG 59.536 44.000 14.23 0.00 0.00 2.74
1529 1949 6.308282 GTGCGTTTATAGGAGTGAGTATATGC 59.692 42.308 0.00 0.00 0.00 3.14
1533 1953 5.126545 TGTGTGCGTTTATAGGAGTGAGTAT 59.873 40.000 0.00 0.00 0.00 2.12
1534 1954 4.460034 TGTGTGCGTTTATAGGAGTGAGTA 59.540 41.667 0.00 0.00 0.00 2.59
1538 1958 2.344441 CGTGTGTGCGTTTATAGGAGTG 59.656 50.000 0.00 0.00 0.00 3.51
1540 1960 1.323534 GCGTGTGTGCGTTTATAGGAG 59.676 52.381 0.00 0.00 0.00 3.69
1547 1967 1.196200 GAATTTGCGTGTGTGCGTTT 58.804 45.000 0.00 0.00 37.81 3.60
1550 1970 1.599422 GCAGAATTTGCGTGTGTGCG 61.599 55.000 0.00 0.00 44.09 5.34
1576 1996 3.694072 AGCTCAGTCTATCGGATATGCTC 59.306 47.826 0.00 0.00 0.00 4.26
1577 1997 3.443329 CAGCTCAGTCTATCGGATATGCT 59.557 47.826 0.00 0.00 0.00 3.79
1578 1998 3.441922 TCAGCTCAGTCTATCGGATATGC 59.558 47.826 0.00 0.00 0.00 3.14
1579 1999 4.457257 TGTCAGCTCAGTCTATCGGATATG 59.543 45.833 0.00 0.00 0.00 1.78
1580 2000 4.457603 GTGTCAGCTCAGTCTATCGGATAT 59.542 45.833 0.00 0.00 0.00 1.63
1581 2001 3.815962 GTGTCAGCTCAGTCTATCGGATA 59.184 47.826 0.00 0.00 0.00 2.59
1582 2002 2.621055 GTGTCAGCTCAGTCTATCGGAT 59.379 50.000 0.00 0.00 0.00 4.18
1583 2003 2.017782 GTGTCAGCTCAGTCTATCGGA 58.982 52.381 0.00 0.00 0.00 4.55
1584 2004 1.745653 TGTGTCAGCTCAGTCTATCGG 59.254 52.381 0.00 0.00 0.00 4.18
1585 2005 3.065925 TGATGTGTCAGCTCAGTCTATCG 59.934 47.826 0.00 0.00 0.00 2.92
1586 2006 4.645762 TGATGTGTCAGCTCAGTCTATC 57.354 45.455 0.00 0.00 0.00 2.08
1587 2007 5.199024 GATGATGTGTCAGCTCAGTCTAT 57.801 43.478 0.00 0.00 37.76 1.98
1588 2008 4.645762 GATGATGTGTCAGCTCAGTCTA 57.354 45.455 0.00 0.00 37.76 2.59
1589 2009 3.523606 GATGATGTGTCAGCTCAGTCT 57.476 47.619 0.00 0.00 37.76 3.24
1654 2074 2.223180 GCGTTCAGTGGAAGAAAACGTT 60.223 45.455 12.35 0.00 43.29 3.99
1655 2075 1.329599 GCGTTCAGTGGAAGAAAACGT 59.670 47.619 12.35 0.00 43.29 3.99
1659 2079 2.031258 TGTGCGTTCAGTGGAAGAAA 57.969 45.000 0.00 0.00 32.62 2.52
1661 2081 1.795768 GATGTGCGTTCAGTGGAAGA 58.204 50.000 0.00 0.00 32.62 2.87
1664 2084 2.027073 GCGATGTGCGTTCAGTGGA 61.027 57.895 0.00 0.00 43.41 4.02
1686 2106 9.895894 CTCGCATTTTTCTGAATTTATTTCATG 57.104 29.630 0.00 0.00 43.30 3.07
1688 2108 7.598118 TGCTCGCATTTTTCTGAATTTATTTCA 59.402 29.630 0.00 0.00 42.09 2.69
1690 2110 7.412237 GCTGCTCGCATTTTTCTGAATTTATTT 60.412 33.333 0.00 0.00 38.92 1.40
1691 2111 6.035327 GCTGCTCGCATTTTTCTGAATTTATT 59.965 34.615 0.00 0.00 38.92 1.40
1692 2112 5.517770 GCTGCTCGCATTTTTCTGAATTTAT 59.482 36.000 0.00 0.00 38.92 1.40
1693 2113 4.858692 GCTGCTCGCATTTTTCTGAATTTA 59.141 37.500 0.00 0.00 38.92 1.40
1698 2118 1.237533 TGCTGCTCGCATTTTTCTGA 58.762 45.000 0.00 0.00 45.47 3.27
1699 2119 3.778969 TGCTGCTCGCATTTTTCTG 57.221 47.368 0.00 0.00 45.47 3.02
1719 2144 2.878406 AGTCCCAAACTTGACATTGACG 59.122 45.455 0.00 0.00 33.03 4.35
1720 2145 4.918810 AAGTCCCAAACTTGACATTGAC 57.081 40.909 0.00 0.00 46.61 3.18
1730 2155 4.392940 CATCAGTCTTCAAGTCCCAAACT 58.607 43.478 0.00 0.00 41.10 2.66
1731 2156 3.503748 CCATCAGTCTTCAAGTCCCAAAC 59.496 47.826 0.00 0.00 0.00 2.93
1732 2157 3.754965 CCATCAGTCTTCAAGTCCCAAA 58.245 45.455 0.00 0.00 0.00 3.28
1733 2158 2.553028 GCCATCAGTCTTCAAGTCCCAA 60.553 50.000 0.00 0.00 0.00 4.12
1746 2171 1.223077 TGGTATCCCCTAGCCATCAGT 59.777 52.381 0.00 0.00 0.00 3.41
1747 2172 1.625818 GTGGTATCCCCTAGCCATCAG 59.374 57.143 0.00 0.00 33.20 2.90
1754 2179 1.962100 GAGAACGGTGGTATCCCCTAG 59.038 57.143 0.00 0.00 0.00 3.02
1775 2200 4.003788 AACTCCTGCGGGTGGACG 62.004 66.667 17.69 2.84 0.00 4.79
1776 2201 2.358737 CAACTCCTGCGGGTGGAC 60.359 66.667 17.69 0.00 0.00 4.02
1777 2202 4.329545 GCAACTCCTGCGGGTGGA 62.330 66.667 17.69 3.23 42.37 4.02
1787 2217 3.050275 GGTCGTGCCAGCAACTCC 61.050 66.667 0.00 0.00 37.17 3.85
1832 3412 2.642807 ACCAAAGAAATCTCTTCCCGGA 59.357 45.455 0.73 0.00 41.23 5.14
1833 3413 3.073274 ACCAAAGAAATCTCTTCCCGG 57.927 47.619 0.00 0.00 41.23 5.73
1844 3424 1.559149 GACCGCGCGTACCAAAGAAA 61.559 55.000 29.95 0.00 0.00 2.52
1845 3425 2.023223 GACCGCGCGTACCAAAGAA 61.023 57.895 29.95 0.00 0.00 2.52
1847 3427 3.834373 CGACCGCGCGTACCAAAG 61.834 66.667 29.95 13.89 0.00 2.77
1962 3549 1.154599 CGCGGCATGTATGATTCGC 60.155 57.895 0.00 13.51 38.68 4.70
1977 3822 2.352915 TTGCAAAGAAACGGCGCG 60.353 55.556 6.90 0.00 0.00 6.86
2044 3891 1.824224 CTCCTGACTGGCTGACTGCA 61.824 60.000 6.65 0.00 45.15 4.41
2064 3919 2.802106 CCTCGTCTTCCTCGCTCC 59.198 66.667 0.00 0.00 0.00 4.70
2138 4001 0.985549 GAGCGTTCGCACTACTTGAG 59.014 55.000 18.95 0.00 0.00 3.02
2249 4119 1.135939 GCGGTTTAATGTGGCGACC 59.864 57.895 0.00 0.00 0.00 4.79
2273 4143 3.709880 TAATGTGGCGACGGCGGAG 62.710 63.158 15.06 5.57 41.24 4.63
2274 4144 2.783241 TTTAATGTGGCGACGGCGGA 62.783 55.000 15.06 5.76 41.24 5.54
2275 4145 2.392181 TTTAATGTGGCGACGGCGG 61.392 57.895 15.06 0.00 41.24 6.13
2276 4146 1.225908 GTTTAATGTGGCGACGGCG 60.226 57.895 17.16 6.12 41.24 6.46
2277 4147 1.135939 GGTTTAATGTGGCGACGGC 59.864 57.895 15.43 15.43 38.90 5.68
2278 4148 1.422269 CGGTTTAATGTGGCGACGG 59.578 57.895 0.00 0.00 0.00 4.79
2279 4149 1.225908 GCGGTTTAATGTGGCGACG 60.226 57.895 0.00 0.00 0.00 5.12
2280 4150 0.238817 TTGCGGTTTAATGTGGCGAC 59.761 50.000 0.00 0.00 0.00 5.19
2281 4151 0.238817 GTTGCGGTTTAATGTGGCGA 59.761 50.000 0.00 0.00 0.00 5.54
2282 4152 0.239879 AGTTGCGGTTTAATGTGGCG 59.760 50.000 0.00 0.00 0.00 5.69
2283 4153 1.696988 CAGTTGCGGTTTAATGTGGC 58.303 50.000 0.00 0.00 0.00 5.01
2284 4154 1.696988 GCAGTTGCGGTTTAATGTGG 58.303 50.000 0.00 0.00 0.00 4.17
2390 4273 2.645802 AGTATCTCTCTCCACACGACC 58.354 52.381 0.00 0.00 0.00 4.79
2572 4455 2.433664 GACAGTTGGCCGTACGGG 60.434 66.667 33.98 19.11 39.58 5.28
2582 4465 1.795286 GAAGCAAGAGACGGACAGTTG 59.205 52.381 0.00 0.00 0.00 3.16
2676 4562 0.614979 TTGGAGGAACCGAGGGAGAG 60.615 60.000 0.00 0.00 42.61 3.20
2685 4573 1.679032 CGATGAGGGTTTGGAGGAACC 60.679 57.143 0.00 0.00 46.70 3.62
2736 4624 5.514274 TTAGGCCACTTGAAAAACAGAAG 57.486 39.130 5.01 0.00 0.00 2.85
2795 4683 6.294120 CCATATGCGCATCCTAAGAATTGAAA 60.294 38.462 29.11 3.86 0.00 2.69
2796 4684 5.181811 CCATATGCGCATCCTAAGAATTGAA 59.818 40.000 29.11 4.38 0.00 2.69
2797 4685 4.696877 CCATATGCGCATCCTAAGAATTGA 59.303 41.667 29.11 4.62 0.00 2.57
2823 4711 5.596836 ACAAGAGATTGAGAGGAGCTTAG 57.403 43.478 0.00 0.00 0.00 2.18
2867 4755 7.538678 CGATCTAGGGTGTGAATTTTGAAAAAG 59.461 37.037 0.00 0.00 0.00 2.27
2942 4833 4.487714 TGGATTTAGAGATTTGCGGTCT 57.512 40.909 0.00 0.00 0.00 3.85
3011 4902 7.078228 CAGATGAACTGCATAATGACATCATG 58.922 38.462 0.00 0.00 39.86 3.07
3014 4905 5.761726 TCCAGATGAACTGCATAATGACATC 59.238 40.000 0.00 0.00 44.52 3.06
3083 4982 5.010314 TGAGCAGAATGAAGCTGAAAACAAT 59.990 36.000 0.00 0.00 42.04 2.71
3171 5070 1.869767 GATTATCACAGCCAGCTTCCG 59.130 52.381 0.00 0.00 0.00 4.30
3266 5170 1.821136 CAGGATTGGGGCAAAGAACTC 59.179 52.381 0.00 0.00 0.00 3.01
3458 5381 6.662616 CACTTCCATTCTGTAACAAAGAGTG 58.337 40.000 0.00 0.00 32.71 3.51
3723 5648 8.950210 GTGTAAATGATATGCAGCATATTACCT 58.050 33.333 25.66 15.54 37.20 3.08
3762 5688 9.778741 ACAAATAAGAAGACTTCAACAGACATA 57.221 29.630 17.34 0.00 37.53 2.29
3882 5831 1.691976 CATAGATGGCGTTGGTAGGGA 59.308 52.381 0.00 0.00 0.00 4.20
4146 6109 4.646492 ACTTTTTCTGCAGGAGTTGTCAAT 59.354 37.500 15.13 0.00 0.00 2.57
4147 6110 4.016444 ACTTTTTCTGCAGGAGTTGTCAA 58.984 39.130 15.13 0.00 0.00 3.18
4241 6204 8.408601 ACATCAGTGTTTATAAATGGATCAAGC 58.591 33.333 0.31 0.00 34.01 4.01
4278 6244 7.807907 GCGATTCTCCTTCAAAATCAAAACTAA 59.192 33.333 0.00 0.00 31.25 2.24
4338 6304 2.422479 CCATTGTTGGTGAGCTCATCTG 59.578 50.000 26.71 16.04 38.30 2.90
4490 6875 3.189702 TCCATTTGGAAATCGACCGAAAC 59.810 43.478 0.00 0.00 42.18 2.78
4503 6888 2.789213 TGCGTTCATCTTCCATTTGGA 58.211 42.857 0.00 0.00 43.73 3.53
4521 6906 2.546368 TCGCACGGTAATGGATTAATGC 59.454 45.455 0.00 0.00 0.00 3.56
4557 6942 7.696453 CGGAAGTAATGTCGCTTTCAATTATTT 59.304 33.333 0.00 0.00 0.00 1.40
4653 7038 5.880332 GCTGGAATGACTAGATAAAACACCA 59.120 40.000 0.00 0.00 0.00 4.17
4705 7090 5.221682 TGTGTTCATCTTCCATTTGGCAATT 60.222 36.000 0.00 0.00 34.44 2.32
4722 7107 4.884744 CCCGGTAATGGATTAATGTGTTCA 59.115 41.667 0.00 0.00 0.00 3.18
5186 8424 0.625316 AGAATGCATACCCAGGCACA 59.375 50.000 0.00 0.00 45.54 4.57
5268 8506 9.388506 TGGAACAACAAAATACAACAAATCAAT 57.611 25.926 0.00 0.00 31.92 2.57
5370 8611 1.349026 CCTGAGGCAAGGAAGAACTCA 59.651 52.381 0.05 0.00 40.02 3.41
5464 8706 6.422223 CGAACATAGGCTGTAATGATGAAAC 58.578 40.000 0.00 0.00 36.98 2.78
5481 8723 5.677319 AATTCTTCCTCTGTCCGAACATA 57.323 39.130 0.00 0.00 34.13 2.29
5582 8824 5.712152 ACCTTTTCTGATGCACTTAAAGG 57.288 39.130 18.55 18.55 44.43 3.11
5701 8950 7.275920 TCCAAATGCTCTTAAAGGAGAGTATC 58.724 38.462 6.06 0.00 44.82 2.24
5742 8991 3.282885 TGTCCACACACATGTTTGCTAA 58.717 40.909 11.90 0.00 36.72 3.09
6173 9445 6.183360 TGCCGAGCTAGGATAAGTTTTAGATT 60.183 38.462 18.16 0.00 0.00 2.40
6220 9493 1.800805 ATGACGTGAACTGCTTCAGG 58.199 50.000 0.00 6.80 44.50 3.86
6332 9605 5.812642 ACCATCACAGAAATTCATCTCGTAC 59.187 40.000 0.00 0.00 0.00 3.67
6466 9748 5.006649 TGCGATCAGTTTTCACTACATATGC 59.993 40.000 1.58 0.00 0.00 3.14
6577 9859 7.399245 TTTATACTTGGTTGCAATAGGGAAC 57.601 36.000 0.59 0.00 46.10 3.62
6578 9860 9.875708 ATATTTATACTTGGTTGCAATAGGGAA 57.124 29.630 0.59 0.00 0.00 3.97
6579 9861 9.295825 CATATTTATACTTGGTTGCAATAGGGA 57.704 33.333 0.59 0.00 0.00 4.20
6580 9862 9.077885 ACATATTTATACTTGGTTGCAATAGGG 57.922 33.333 0.59 0.00 0.00 3.53
6750 10408 2.939022 AGCGCTGCTGTTTTCGTC 59.061 55.556 10.39 0.00 37.57 4.20
6840 10498 3.701040 ACACTGCAAAAGATGTTTCCAGT 59.299 39.130 12.81 12.81 38.05 4.00
6901 10559 2.808523 TGCATTCCAAAACATCGCAA 57.191 40.000 0.00 0.00 0.00 4.85
7196 11003 4.020617 CTTGGAGGGCCGCTGTCA 62.021 66.667 7.35 0.00 36.79 3.58
7419 11244 1.341209 GGCTGAACCCAAAAACCTCTG 59.659 52.381 0.00 0.00 0.00 3.35
7457 11289 1.228124 CAACTTTCGACAGCCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
7516 11354 3.672867 CACCAGAACAACAACAAACACAC 59.327 43.478 0.00 0.00 0.00 3.82
7517 11355 3.858877 GCACCAGAACAACAACAAACACA 60.859 43.478 0.00 0.00 0.00 3.72
7533 11382 0.957395 AACGAGCAATCCAGCACCAG 60.957 55.000 0.00 0.00 36.85 4.00
7571 11425 1.823828 CGAAACTACCGTCTGGATCG 58.176 55.000 0.00 0.00 39.21 3.69
7573 11427 0.179145 CGCGAAACTACCGTCTGGAT 60.179 55.000 0.00 0.00 39.21 3.41
7574 11428 1.210931 CGCGAAACTACCGTCTGGA 59.789 57.895 0.00 0.00 39.21 3.86
7604 11458 8.785329 AAAAGTACAACCATTTCACAACAATT 57.215 26.923 0.00 0.00 0.00 2.32
7605 11459 8.785329 AAAAAGTACAACCATTTCACAACAAT 57.215 26.923 0.00 0.00 0.00 2.71
7650 11504 1.311859 ACATATGATGCTGCCCAACG 58.688 50.000 10.38 0.00 0.00 4.10
7701 11555 1.796151 CCGCGATGCAACAGTTGAT 59.204 52.632 17.99 7.61 0.00 2.57
7722 11576 2.575893 TAGAAGACGCCGCAACCCA 61.576 57.895 0.00 0.00 0.00 4.51
7735 11589 2.474410 AGGAACAAAGGGCGTAGAAG 57.526 50.000 0.00 0.00 0.00 2.85
7742 11596 1.260544 AGATGCAAGGAACAAAGGGC 58.739 50.000 0.00 0.00 0.00 5.19
7745 11599 5.400485 CGAAAGAAAGATGCAAGGAACAAAG 59.600 40.000 0.00 0.00 0.00 2.77
7771 11625 9.755064 CTAAATCGTCAATTTGACTAACGAAAT 57.245 29.630 23.29 13.13 44.85 2.17
7772 11626 8.980610 TCTAAATCGTCAATTTGACTAACGAAA 58.019 29.630 23.29 8.68 44.85 3.46
7773 11627 8.523523 TCTAAATCGTCAATTTGACTAACGAA 57.476 30.769 23.29 7.33 44.85 3.85
7774 11628 8.430063 GTTCTAAATCGTCAATTTGACTAACGA 58.570 33.333 23.29 17.44 44.85 3.85
7775 11629 8.433126 AGTTCTAAATCGTCAATTTGACTAACG 58.567 33.333 23.29 13.31 44.85 3.18
7813 11667 3.498397 ACTATCAAGTGTGACCGCAAAAG 59.502 43.478 0.00 0.00 36.31 2.27
7814 11668 3.472652 ACTATCAAGTGTGACCGCAAAA 58.527 40.909 0.00 0.00 36.31 2.44
7840 11694 6.615617 TGAGACAGAGGGAGTAGCTAATATT 58.384 40.000 0.00 0.00 0.00 1.28
7842 11696 5.648330 TGAGACAGAGGGAGTAGCTAATA 57.352 43.478 0.00 0.00 0.00 0.98
7843 11697 4.528076 TGAGACAGAGGGAGTAGCTAAT 57.472 45.455 0.00 0.00 0.00 1.73
7844 11698 4.528076 ATGAGACAGAGGGAGTAGCTAA 57.472 45.455 0.00 0.00 0.00 3.09
7846 11700 4.528076 TTATGAGACAGAGGGAGTAGCT 57.472 45.455 0.00 0.00 0.00 3.32
7847 11701 8.582657 TTATATTATGAGACAGAGGGAGTAGC 57.417 38.462 0.00 0.00 0.00 3.58
7848 11702 9.967451 TCTTATATTATGAGACAGAGGGAGTAG 57.033 37.037 0.00 0.00 0.00 2.57
7849 11703 9.967451 CTCTTATATTATGAGACAGAGGGAGTA 57.033 37.037 0.00 0.00 33.20 2.59
7850 11704 8.452868 ACTCTTATATTATGAGACAGAGGGAGT 58.547 37.037 0.00 0.00 34.90 3.85
7851 11705 8.739039 CACTCTTATATTATGAGACAGAGGGAG 58.261 40.741 0.00 0.00 32.92 4.30
7852 11706 8.228206 ACACTCTTATATTATGAGACAGAGGGA 58.772 37.037 2.59 0.00 34.50 4.20
7853 11707 8.415950 ACACTCTTATATTATGAGACAGAGGG 57.584 38.462 0.00 0.00 36.55 4.30
7889 11743 9.965824 CTCCATTCCATAATATAAAAGCGTTTT 57.034 29.630 2.19 1.29 36.67 2.43
7890 11744 8.576442 CCTCCATTCCATAATATAAAAGCGTTT 58.424 33.333 2.53 2.53 0.00 3.60
7891 11745 7.176690 CCCTCCATTCCATAATATAAAAGCGTT 59.823 37.037 0.00 0.00 0.00 4.84
7892 11746 6.659242 CCCTCCATTCCATAATATAAAAGCGT 59.341 38.462 0.00 0.00 0.00 5.07
7893 11747 6.884295 TCCCTCCATTCCATAATATAAAAGCG 59.116 38.462 0.00 0.00 0.00 4.68
7894 11748 7.890655 ACTCCCTCCATTCCATAATATAAAAGC 59.109 37.037 0.00 0.00 0.00 3.51
7897 11751 9.852784 TCTACTCCCTCCATTCCATAATATAAA 57.147 33.333 0.00 0.00 0.00 1.40
7898 11752 9.852784 TTCTACTCCCTCCATTCCATAATATAA 57.147 33.333 0.00 0.00 0.00 0.98
7899 11753 9.852784 TTTCTACTCCCTCCATTCCATAATATA 57.147 33.333 0.00 0.00 0.00 0.86
7900 11754 8.757307 TTTCTACTCCCTCCATTCCATAATAT 57.243 34.615 0.00 0.00 0.00 1.28
7901 11755 8.575736 TTTTCTACTCCCTCCATTCCATAATA 57.424 34.615 0.00 0.00 0.00 0.98
7902 11756 7.465900 TTTTCTACTCCCTCCATTCCATAAT 57.534 36.000 0.00 0.00 0.00 1.28
7903 11757 6.901615 TTTTCTACTCCCTCCATTCCATAA 57.098 37.500 0.00 0.00 0.00 1.90
7904 11758 8.016652 TCTATTTTCTACTCCCTCCATTCCATA 58.983 37.037 0.00 0.00 0.00 2.74
7905 11759 6.851836 TCTATTTTCTACTCCCTCCATTCCAT 59.148 38.462 0.00 0.00 0.00 3.41
7906 11760 6.099845 GTCTATTTTCTACTCCCTCCATTCCA 59.900 42.308 0.00 0.00 0.00 3.53
7907 11761 6.327887 AGTCTATTTTCTACTCCCTCCATTCC 59.672 42.308 0.00 0.00 0.00 3.01
7908 11762 7.289084 AGAGTCTATTTTCTACTCCCTCCATTC 59.711 40.741 0.00 0.00 40.42 2.67
7909 11763 7.136203 AGAGTCTATTTTCTACTCCCTCCATT 58.864 38.462 0.00 0.00 40.42 3.16
7910 11764 6.688554 AGAGTCTATTTTCTACTCCCTCCAT 58.311 40.000 0.00 0.00 40.42 3.41
7911 11765 6.093617 AGAGTCTATTTTCTACTCCCTCCA 57.906 41.667 0.00 0.00 40.42 3.86
7912 11766 8.415553 GTTTAGAGTCTATTTTCTACTCCCTCC 58.584 40.741 0.00 0.00 40.42 4.30
7913 11767 8.968969 TGTTTAGAGTCTATTTTCTACTCCCTC 58.031 37.037 0.00 0.00 40.42 4.30
7914 11768 8.896722 TGTTTAGAGTCTATTTTCTACTCCCT 57.103 34.615 0.00 0.00 40.42 4.20
7915 11769 9.752961 GATGTTTAGAGTCTATTTTCTACTCCC 57.247 37.037 0.00 0.00 40.42 4.30
7916 11770 9.453325 CGATGTTTAGAGTCTATTTTCTACTCC 57.547 37.037 0.00 0.00 40.42 3.85
7917 11771 8.960075 GCGATGTTTAGAGTCTATTTTCTACTC 58.040 37.037 0.00 0.00 39.95 2.59
7918 11772 8.467598 TGCGATGTTTAGAGTCTATTTTCTACT 58.532 33.333 0.00 0.00 0.00 2.57
7919 11773 8.533153 GTGCGATGTTTAGAGTCTATTTTCTAC 58.467 37.037 0.00 0.00 0.00 2.59
7920 11774 8.467598 AGTGCGATGTTTAGAGTCTATTTTCTA 58.532 33.333 0.00 0.00 0.00 2.10
7921 11775 7.324178 AGTGCGATGTTTAGAGTCTATTTTCT 58.676 34.615 0.00 0.00 0.00 2.52
7922 11776 7.527084 AGTGCGATGTTTAGAGTCTATTTTC 57.473 36.000 0.00 0.00 0.00 2.29
7923 11777 7.387948 ACAAGTGCGATGTTTAGAGTCTATTTT 59.612 33.333 0.00 0.00 0.00 1.82
7924 11778 6.874134 ACAAGTGCGATGTTTAGAGTCTATTT 59.126 34.615 0.00 0.00 0.00 1.40
7925 11779 6.398918 ACAAGTGCGATGTTTAGAGTCTATT 58.601 36.000 0.00 0.00 0.00 1.73
7926 11780 5.967088 ACAAGTGCGATGTTTAGAGTCTAT 58.033 37.500 0.00 0.00 0.00 1.98
7927 11781 5.386958 ACAAGTGCGATGTTTAGAGTCTA 57.613 39.130 0.00 0.00 0.00 2.59
7928 11782 4.258702 ACAAGTGCGATGTTTAGAGTCT 57.741 40.909 0.00 0.00 0.00 3.24
7929 11783 4.992381 AACAAGTGCGATGTTTAGAGTC 57.008 40.909 0.00 0.00 37.74 3.36
7930 11784 4.929808 CCTAACAAGTGCGATGTTTAGAGT 59.070 41.667 6.85 0.00 41.11 3.24
7931 11785 4.330074 CCCTAACAAGTGCGATGTTTAGAG 59.670 45.833 6.85 0.37 41.11 2.43
7932 11786 4.020928 TCCCTAACAAGTGCGATGTTTAGA 60.021 41.667 6.85 0.99 41.11 2.10
7933 11787 4.092968 GTCCCTAACAAGTGCGATGTTTAG 59.907 45.833 6.85 0.00 41.11 1.85
7934 11788 3.998341 GTCCCTAACAAGTGCGATGTTTA 59.002 43.478 6.85 0.00 41.11 2.01
7935 11789 2.812011 GTCCCTAACAAGTGCGATGTTT 59.188 45.455 6.85 0.00 41.11 2.83
7936 11790 2.423577 GTCCCTAACAAGTGCGATGTT 58.576 47.619 6.77 6.77 43.14 2.71
7937 11791 1.338769 GGTCCCTAACAAGTGCGATGT 60.339 52.381 0.00 0.00 0.00 3.06
7938 11792 1.369625 GGTCCCTAACAAGTGCGATG 58.630 55.000 0.00 0.00 0.00 3.84
7939 11793 0.108329 CGGTCCCTAACAAGTGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
7940 11794 1.290955 CGGTCCCTAACAAGTGCGA 59.709 57.895 0.00 0.00 0.00 5.10
7941 11795 1.740296 CCGGTCCCTAACAAGTGCG 60.740 63.158 0.00 0.00 0.00 5.34
7942 11796 2.038837 GCCGGTCCCTAACAAGTGC 61.039 63.158 1.90 0.00 0.00 4.40
7943 11797 1.376812 GGCCGGTCCCTAACAAGTG 60.377 63.158 1.90 0.00 0.00 3.16
7944 11798 1.420532 TTGGCCGGTCCCTAACAAGT 61.421 55.000 2.12 0.00 0.00 3.16
7945 11799 0.958876 GTTGGCCGGTCCCTAACAAG 60.959 60.000 2.12 0.00 0.00 3.16
7946 11800 1.073548 GTTGGCCGGTCCCTAACAA 59.926 57.895 2.12 0.00 0.00 2.83
7947 11801 2.119484 CTGTTGGCCGGTCCCTAACA 62.119 60.000 2.12 6.96 0.00 2.41
7948 11802 1.376812 CTGTTGGCCGGTCCCTAAC 60.377 63.158 2.12 1.42 0.00 2.34
7949 11803 1.536907 TCTGTTGGCCGGTCCCTAA 60.537 57.895 2.12 0.00 0.00 2.69
7950 11804 1.987855 CTCTGTTGGCCGGTCCCTA 60.988 63.158 2.12 0.00 0.00 3.53
7951 11805 2.741878 TACTCTGTTGGCCGGTCCCT 62.742 60.000 2.12 0.00 0.00 4.20
7952 11806 1.833787 TTACTCTGTTGGCCGGTCCC 61.834 60.000 2.12 0.00 0.00 4.46
7998 11852 4.574828 TGACTTTTGTAGAGCCAACTCAAC 59.425 41.667 0.00 0.00 46.09 3.18
8030 11884 3.281727 TCTGAACAACCTGTTTGAGCT 57.718 42.857 0.00 0.00 41.28 4.09
8111 11965 9.111519 TGTATATATGCCTTATCAAAAGGGAGA 57.888 33.333 5.96 0.66 41.13 3.71
8113 11967 8.664992 TGTGTATATATGCCTTATCAAAAGGGA 58.335 33.333 5.96 3.24 42.05 4.20
8124 11978 5.789521 TGCGTGTATGTGTATATATGCCTT 58.210 37.500 0.00 0.00 40.30 4.35
8173 12032 2.924185 CTGCTGACAGGTCACAAGG 58.076 57.895 4.26 0.00 40.48 3.61
8185 12044 1.519234 CGTCGCTTATGCCTGCTGA 60.519 57.895 0.00 0.00 35.36 4.26
8207 12066 2.903678 CAAAGTCGTGGAATGTTCGTG 58.096 47.619 0.00 0.00 0.00 4.35
8209 12068 1.531149 AGCAAAGTCGTGGAATGTTCG 59.469 47.619 0.00 0.00 0.00 3.95
8231 12090 2.053244 CCTCCACTGGGATTGAGCTAT 58.947 52.381 0.00 0.00 43.91 2.97
8232 12091 1.500474 CCTCCACTGGGATTGAGCTA 58.500 55.000 0.00 0.00 43.91 3.32
8234 12093 1.452833 GCCTCCACTGGGATTGAGC 60.453 63.158 0.00 0.00 43.91 4.26
8258 12117 0.537143 TGTGCATGTCAGTTGGGGAC 60.537 55.000 0.00 0.00 35.83 4.46
8279 12138 2.210116 CGGTTTGCTAGTCGGCATTAT 58.790 47.619 0.00 0.00 42.09 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.