Multiple sequence alignment - TraesCS1B01G313900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G313900 chr1B 100.000 2651 0 0 1 2651 538157017 538154367 0.000000e+00 4896
1 TraesCS1B01G313900 chr1D 94.744 1560 48 10 1108 2649 400951157 400949614 0.000000e+00 2396
2 TraesCS1B01G313900 chr1D 96.301 730 24 3 313 1041 400951880 400951153 0.000000e+00 1195
3 TraesCS1B01G313900 chr1D 90.000 300 17 5 1 289 400952804 400952507 2.490000e-100 375
4 TraesCS1B01G313900 chr1D 87.879 297 24 6 3 289 400952506 400952212 3.270000e-89 339
5 TraesCS1B01G313900 chr1A 92.960 1534 69 12 1139 2651 497182702 497181187 0.000000e+00 2198
6 TraesCS1B01G313900 chr1A 93.673 490 22 4 595 1076 497183474 497182986 0.000000e+00 725
7 TraesCS1B01G313900 chr1A 83.994 631 52 22 1 596 497184251 497183635 6.410000e-156 560


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G313900 chr1B 538154367 538157017 2650 True 4896.00 4896 100.000 1 2651 1 chr1B.!!$R1 2650
1 TraesCS1B01G313900 chr1D 400949614 400952804 3190 True 1076.25 2396 92.231 1 2649 4 chr1D.!!$R1 2648
2 TraesCS1B01G313900 chr1A 497181187 497184251 3064 True 1161.00 2198 90.209 1 2651 3 chr1A.!!$R1 2650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 1053 2.349155 GCTTCTAAAACCGTGTGAACCG 60.349 50.0 0.0 0.0 0.00 4.44 F
1083 1874 0.183971 TCCAAGCGGAACCCAAAGAA 59.816 50.0 0.0 0.0 38.83 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 2514 0.320858 TGATTCAAACGCACGGCCTA 60.321 50.000 0.0 0.0 0.0 3.93 R
2269 3310 1.141053 AGAAACTTGTTGCTCCTCCGT 59.859 47.619 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 168 9.323985 TCAAGGTAAATTTTGGAAAATGTTCAG 57.676 29.630 0.00 0.00 38.53 3.02
236 247 8.714179 ACAAAATGCTCAACATGTATTCAATTG 58.286 29.630 0.00 0.00 39.60 2.32
270 281 4.903638 ACGTGTATCTGACAAATGTTCG 57.096 40.909 0.00 0.00 40.66 3.95
279 290 6.223138 TCTGACAAATGTTCGATGTGTAAC 57.777 37.500 0.00 0.00 37.35 2.50
432 1053 2.349155 GCTTCTAAAACCGTGTGAACCG 60.349 50.000 0.00 0.00 0.00 4.44
457 1078 3.885297 CCATATAAGCTTCCCACAACCAG 59.115 47.826 0.00 0.00 0.00 4.00
480 1101 2.498167 CAGGATGCTACAGTATTGGGC 58.502 52.381 0.00 0.00 0.00 5.36
691 1474 9.193133 CTTACCATTATACCTCATTACAACGAG 57.807 37.037 0.00 0.00 0.00 4.18
712 1495 5.559608 CGAGCCATGCACAATTAAGTATGAG 60.560 44.000 8.35 2.28 30.65 2.90
804 1587 2.463752 TGGTAGTGGGATGGACTACAC 58.536 52.381 11.17 0.00 45.18 2.90
811 1594 3.941483 GTGGGATGGACTACACATTTGAG 59.059 47.826 0.00 0.00 34.16 3.02
869 1652 3.053095 AGTGGGTCGAGTTAGGAATCCTA 60.053 47.826 4.61 4.61 34.61 2.94
876 1659 7.015001 GGGTCGAGTTAGGAATCCTAGAAAATA 59.985 40.741 9.22 0.00 37.42 1.40
1020 1811 9.459640 CCGCGTGTATATATACTGCTTATATTT 57.540 33.333 24.94 1.09 35.36 1.40
1059 1850 7.318893 TCATCACACATATCTAGATAGCTTGC 58.681 38.462 17.22 0.00 0.00 4.01
1076 1867 2.617274 GCACACTCCAAGCGGAACC 61.617 63.158 0.00 0.00 42.21 3.62
1077 1868 1.966451 CACACTCCAAGCGGAACCC 60.966 63.158 0.00 0.00 42.21 4.11
1078 1869 2.429930 CACTCCAAGCGGAACCCA 59.570 61.111 0.00 0.00 42.21 4.51
1079 1870 1.228124 CACTCCAAGCGGAACCCAA 60.228 57.895 0.00 0.00 42.21 4.12
1080 1871 0.821711 CACTCCAAGCGGAACCCAAA 60.822 55.000 0.00 0.00 42.21 3.28
1081 1872 0.537371 ACTCCAAGCGGAACCCAAAG 60.537 55.000 0.00 0.00 42.21 2.77
1082 1873 0.250727 CTCCAAGCGGAACCCAAAGA 60.251 55.000 0.00 0.00 42.21 2.52
1083 1874 0.183971 TCCAAGCGGAACCCAAAGAA 59.816 50.000 0.00 0.00 38.83 2.52
1084 1875 1.036707 CCAAGCGGAACCCAAAGAAA 58.963 50.000 0.00 0.00 0.00 2.52
1085 1876 1.269569 CCAAGCGGAACCCAAAGAAAC 60.270 52.381 0.00 0.00 0.00 2.78
1086 1877 1.407258 CAAGCGGAACCCAAAGAAACA 59.593 47.619 0.00 0.00 0.00 2.83
1087 1878 1.029681 AGCGGAACCCAAAGAAACAC 58.970 50.000 0.00 0.00 0.00 3.32
1088 1879 0.741915 GCGGAACCCAAAGAAACACA 59.258 50.000 0.00 0.00 0.00 3.72
1089 1880 1.535226 GCGGAACCCAAAGAAACACAC 60.535 52.381 0.00 0.00 0.00 3.82
1090 1881 1.746220 CGGAACCCAAAGAAACACACA 59.254 47.619 0.00 0.00 0.00 3.72
1091 1882 2.478879 CGGAACCCAAAGAAACACACAC 60.479 50.000 0.00 0.00 0.00 3.82
1092 1883 2.494073 GGAACCCAAAGAAACACACACA 59.506 45.455 0.00 0.00 0.00 3.72
1093 1884 3.507786 GAACCCAAAGAAACACACACAC 58.492 45.455 0.00 0.00 0.00 3.82
1094 1885 2.520069 ACCCAAAGAAACACACACACA 58.480 42.857 0.00 0.00 0.00 3.72
1095 1886 2.230266 ACCCAAAGAAACACACACACAC 59.770 45.455 0.00 0.00 0.00 3.82
1096 1887 2.230025 CCCAAAGAAACACACACACACA 59.770 45.455 0.00 0.00 0.00 3.72
1097 1888 3.241701 CCAAAGAAACACACACACACAC 58.758 45.455 0.00 0.00 0.00 3.82
1098 1889 3.304996 CCAAAGAAACACACACACACACA 60.305 43.478 0.00 0.00 0.00 3.72
1099 1890 3.552604 AAGAAACACACACACACACAC 57.447 42.857 0.00 0.00 0.00 3.82
1100 1891 2.499197 AGAAACACACACACACACACA 58.501 42.857 0.00 0.00 0.00 3.72
1101 1892 2.225491 AGAAACACACACACACACACAC 59.775 45.455 0.00 0.00 0.00 3.82
1102 1893 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1103 1894 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1104 1895 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1105 1896 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1106 1897 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1107 1898 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1108 1899 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1109 1900 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1110 1901 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1111 1902 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1112 1903 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1113 1904 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1114 1905 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1115 1906 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1116 1907 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1123 1914 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
1124 1915 2.095314 CACACACACACACACACACATT 60.095 45.455 0.00 0.00 0.00 2.71
1262 2274 9.537848 CAATCAGGTATTTTGTTTTCTACGTAC 57.462 33.333 0.00 0.00 0.00 3.67
1321 2337 2.352503 TTTACTAACCTCACGTCGGC 57.647 50.000 0.00 0.00 0.00 5.54
1335 2351 4.751098 TCACGTCGGCACTTAAACTTATTT 59.249 37.500 0.00 0.00 0.00 1.40
1417 2433 3.244561 CCCTTCTCTGGCACAAAGTAAGA 60.245 47.826 0.00 0.00 38.70 2.10
1498 2514 6.661805 TGGGTTAACACTTCAGTTTTCTTTCT 59.338 34.615 9.72 0.00 33.07 2.52
1810 2826 7.119846 GGATCGGGTTCCATTATCAAAAGATAG 59.880 40.741 0.00 0.00 35.72 2.08
1817 2833 7.807977 TCCATTATCAAAAGATAGCAGAACC 57.192 36.000 0.00 0.00 0.00 3.62
1892 2913 1.008995 CCAAAAGTGTCGCCAACCG 60.009 57.895 0.00 0.00 38.61 4.44
1904 2925 3.524873 CAACCGTTGTTGCATGCG 58.475 55.556 14.09 0.00 44.86 4.73
1948 2969 4.365514 ACTACATGACAACCCATCACAA 57.634 40.909 0.00 0.00 0.00 3.33
2039 3069 8.605947 TGCAATATTAGCAAACTATAGGGATCT 58.394 33.333 4.43 0.00 39.39 2.75
2113 3148 2.451490 TCCTCAACATCTCTCGCTTCT 58.549 47.619 0.00 0.00 0.00 2.85
2121 3156 6.311445 TCAACATCTCTCGCTTCTAACATTTC 59.689 38.462 0.00 0.00 0.00 2.17
2122 3157 4.800993 ACATCTCTCGCTTCTAACATTTCG 59.199 41.667 0.00 0.00 0.00 3.46
2123 3158 4.696899 TCTCTCGCTTCTAACATTTCGA 57.303 40.909 0.00 0.00 0.00 3.71
2208 3249 0.524862 CCATGTTTCAGTGCAGCTCC 59.475 55.000 0.00 0.00 0.00 4.70
2225 3266 2.560105 GCTCCTTCACCTTCATTTTGCT 59.440 45.455 0.00 0.00 0.00 3.91
2269 3310 7.319646 AGAACAAGCATAACAAACAAACTCAA 58.680 30.769 0.00 0.00 0.00 3.02
2318 3359 2.901839 ACAGGCCCGACTAAGAAGTTTA 59.098 45.455 0.00 0.00 35.56 2.01
2582 3623 2.762887 TGTTGTCTTTGGTGGCAATGAA 59.237 40.909 0.00 0.00 0.00 2.57
2625 3666 6.263168 CGATTTTCTGGGGAACATTAGCTTAT 59.737 38.462 0.00 0.00 0.00 1.73
2631 3672 5.200483 TGGGGAACATTAGCTTATGAAAGG 58.800 41.667 19.06 0.00 32.98 3.11
2636 3677 7.251281 GGAACATTAGCTTATGAAAGGTGTTC 58.749 38.462 19.06 11.19 43.18 3.18
2638 3679 7.759489 ACATTAGCTTATGAAAGGTGTTCAA 57.241 32.000 19.06 0.00 43.18 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.733402 AATGTTCAACATTTCCCAAATTCTG 57.267 32.000 10.14 0.00 45.80 3.02
95 97 9.704098 GTTAAAAATTTTTGGTAAATGCACGAA 57.296 25.926 23.36 4.82 0.00 3.85
96 98 8.056571 CGTTAAAAATTTTTGGTAAATGCACGA 58.943 29.630 23.36 0.00 0.00 4.35
97 99 7.846592 ACGTTAAAAATTTTTGGTAAATGCACG 59.153 29.630 23.36 17.18 0.00 5.34
98 100 8.938928 CACGTTAAAAATTTTTGGTAAATGCAC 58.061 29.630 23.36 7.28 0.00 4.57
99 101 8.665685 ACACGTTAAAAATTTTTGGTAAATGCA 58.334 25.926 23.36 0.00 0.00 3.96
147 149 6.917217 TTCGCTGAACATTTTCCAAAATTT 57.083 29.167 0.00 0.00 36.52 1.82
236 247 8.492748 TGTCAGATACACGTTAATGTTTTCTTC 58.507 33.333 0.00 0.00 33.85 2.87
251 262 6.128553 ACACATCGAACATTTGTCAGATACAC 60.129 38.462 0.00 0.00 38.00 2.90
279 290 9.757859 TTCGTACACAAACTAAACACTTTTTAG 57.242 29.630 0.00 2.84 37.84 1.85
396 1017 8.710551 GGTTTTAGAAGCTTAAGTGAGTCTAAC 58.289 37.037 0.00 4.76 29.67 2.34
408 1029 4.512571 GGTTCACACGGTTTTAGAAGCTTA 59.487 41.667 0.00 0.00 34.78 3.09
432 1053 3.857157 TGTGGGAAGCTTATATGGACC 57.143 47.619 0.00 0.00 0.00 4.46
457 1078 3.495100 CCCAATACTGTAGCATCCTGGAC 60.495 52.174 0.00 0.00 0.00 4.02
480 1101 1.299468 CGCTCCGCTAACTAGCCAG 60.299 63.158 3.18 1.38 46.34 4.85
538 1159 0.036765 AGAAAACCGCGATGCCTACA 60.037 50.000 8.23 0.00 0.00 2.74
593 1214 3.071479 GTTTGGTCATGGAAGACGCTAA 58.929 45.455 0.00 0.00 39.42 3.09
685 1468 2.917701 TAATTGTGCATGGCTCGTTG 57.082 45.000 0.00 0.00 0.00 4.10
691 1474 5.528690 TCTCTCATACTTAATTGTGCATGGC 59.471 40.000 0.00 0.00 0.00 4.40
804 1587 5.636543 GGAGCAAGATTTGGTTTCTCAAATG 59.363 40.000 7.43 0.00 44.48 2.32
811 1594 4.590850 ACAAGGAGCAAGATTTGGTTTC 57.409 40.909 0.00 0.00 42.23 2.78
1031 1822 7.490840 AGCTATCTAGATATGTGTGATGATGC 58.509 38.462 12.86 8.20 0.00 3.91
1059 1850 1.966451 GGGTTCCGCTTGGAGTGTG 60.966 63.158 0.00 0.00 44.35 3.82
1076 1867 3.241701 GTGTGTGTGTGTGTTTCTTTGG 58.758 45.455 0.00 0.00 0.00 3.28
1077 1868 3.668191 GTGTGTGTGTGTGTGTTTCTTTG 59.332 43.478 0.00 0.00 0.00 2.77
1078 1869 3.316588 TGTGTGTGTGTGTGTGTTTCTTT 59.683 39.130 0.00 0.00 0.00 2.52
1079 1870 2.881513 TGTGTGTGTGTGTGTGTTTCTT 59.118 40.909 0.00 0.00 0.00 2.52
1080 1871 2.225491 GTGTGTGTGTGTGTGTGTTTCT 59.775 45.455 0.00 0.00 0.00 2.52
1081 1872 2.031595 TGTGTGTGTGTGTGTGTGTTTC 60.032 45.455 0.00 0.00 0.00 2.78
1082 1873 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
1083 1874 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
1084 1875 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1085 1876 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1086 1877 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1087 1878 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1088 1879 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1089 1880 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1090 1881 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1091 1882 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1092 1883 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1093 1884 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1094 1885 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1095 1886 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1096 1887 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1097 1888 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1098 1889 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1099 1890 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1100 1891 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1101 1892 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1102 1893 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1103 1894 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1104 1895 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
1105 1896 2.161211 TGAATGTGTGTGTGTGTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
1106 1897 2.161410 GTGAATGTGTGTGTGTGTGTGT 59.839 45.455 0.00 0.00 0.00 3.72
1107 1898 2.784505 GTGAATGTGTGTGTGTGTGTG 58.215 47.619 0.00 0.00 0.00 3.82
1108 1899 1.396648 CGTGAATGTGTGTGTGTGTGT 59.603 47.619 0.00 0.00 0.00 3.72
1109 1900 1.267982 CCGTGAATGTGTGTGTGTGTG 60.268 52.381 0.00 0.00 0.00 3.82
1110 1901 1.013596 CCGTGAATGTGTGTGTGTGT 58.986 50.000 0.00 0.00 0.00 3.72
1111 1902 1.013596 ACCGTGAATGTGTGTGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
1112 1903 1.013596 CACCGTGAATGTGTGTGTGT 58.986 50.000 0.00 0.00 0.00 3.72
1113 1904 0.316937 GCACCGTGAATGTGTGTGTG 60.317 55.000 1.65 0.00 36.11 3.82
1114 1905 0.463654 AGCACCGTGAATGTGTGTGT 60.464 50.000 1.65 0.00 36.11 3.72
1115 1906 0.662619 AAGCACCGTGAATGTGTGTG 59.337 50.000 1.65 0.00 36.11 3.82
1116 1907 0.944386 GAAGCACCGTGAATGTGTGT 59.056 50.000 1.65 0.00 36.11 3.72
1123 1914 2.613026 TCTTCTTGAAGCACCGTGAA 57.387 45.000 1.65 0.00 0.00 3.18
1124 1915 2.613026 TTCTTCTTGAAGCACCGTGA 57.387 45.000 1.65 0.00 0.00 4.35
1335 2351 5.423886 TGGTTCACTGCGACATGATTATAA 58.576 37.500 0.00 0.00 0.00 0.98
1498 2514 0.320858 TGATTCAAACGCACGGCCTA 60.321 50.000 0.00 0.00 0.00 3.93
1892 2913 4.998024 TGCGGCGCATGCAACAAC 62.998 61.111 33.07 5.48 45.35 3.32
1904 2925 4.939509 TCTTACTTCTATTTGTTGCGGC 57.060 40.909 0.00 0.00 0.00 6.53
2039 3069 7.719193 TGATGAAGGAACATGAGTTTGAAACTA 59.281 33.333 11.01 0.48 43.03 2.24
2113 3148 4.469945 AGAGGAAGGGATGTCGAAATGTTA 59.530 41.667 0.00 0.00 0.00 2.41
2121 3156 1.680735 CAGAGAGAGGAAGGGATGTCG 59.319 57.143 0.00 0.00 0.00 4.35
2122 3157 1.412343 GCAGAGAGAGGAAGGGATGTC 59.588 57.143 0.00 0.00 0.00 3.06
2123 3158 1.273495 TGCAGAGAGAGGAAGGGATGT 60.273 52.381 0.00 0.00 0.00 3.06
2171 3212 4.534500 ACATGGAGTGGTGGTTGTATAGAA 59.466 41.667 0.00 0.00 0.00 2.10
2208 3249 3.062042 GGCAAGCAAAATGAAGGTGAAG 58.938 45.455 0.00 0.00 0.00 3.02
2225 3266 2.161855 CTTTCATGCACTACTGGGCAA 58.838 47.619 0.00 0.00 44.20 4.52
2269 3310 1.141053 AGAAACTTGTTGCTCCTCCGT 59.859 47.619 0.00 0.00 0.00 4.69
2318 3359 1.476471 GCTCTATGCTGGGCAATCTGT 60.476 52.381 0.00 0.00 43.62 3.41
2545 3586 8.352201 CAAAGACAACATGATCAAAAGGAAGTA 58.648 33.333 0.00 0.00 0.00 2.24
2582 3623 5.665916 AATCGAAATCTGGCTTTGGAATT 57.334 34.783 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.