Multiple sequence alignment - TraesCS1B01G313600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G313600 chr1B 100.000 3806 0 0 1 3806 537657038 537660843 0.000000e+00 7029.0
1 TraesCS1B01G313600 chr1B 94.544 3189 120 18 3 3176 559332535 559335684 0.000000e+00 4876.0
2 TraesCS1B01G313600 chr1B 83.495 103 16 1 224 326 628044516 628044617 1.130000e-15 95.3
3 TraesCS1B01G313600 chr1A 92.935 2463 137 19 1011 3448 511148246 511150696 0.000000e+00 3550.0
4 TraesCS1B01G313600 chr1A 90.928 981 77 7 39 1015 511147344 511148316 0.000000e+00 1308.0
5 TraesCS1B01G313600 chr1A 93.418 866 45 2 1814 2679 511224714 511225567 0.000000e+00 1273.0
6 TraesCS1B01G313600 chr1A 76.287 1535 296 47 1035 2529 558032191 558033697 0.000000e+00 756.0
7 TraesCS1B01G313600 chr1A 90.262 534 38 8 2720 3243 511240584 511241113 0.000000e+00 686.0
8 TraesCS1B01G313600 chr1A 94.444 378 17 1 3433 3806 511150711 511151088 2.550000e-161 579.0
9 TraesCS1B01G313600 chr1A 92.167 383 19 7 3433 3806 511241285 511241665 7.240000e-147 531.0
10 TraesCS1B01G313600 chr1A 83.495 103 16 1 224 326 550431416 550431517 1.130000e-15 95.3
11 TraesCS1B01G313600 chr1D 95.692 1416 47 2 1435 2850 414482680 414484081 0.000000e+00 2265.0
12 TraesCS1B01G313600 chr1D 96.019 829 32 1 10 837 414442892 414443720 0.000000e+00 1347.0
13 TraesCS1B01G313600 chr1D 96.245 506 19 0 830 1335 414451241 414451746 0.000000e+00 830.0
14 TraesCS1B01G313600 chr1D 91.379 232 12 5 2861 3088 414484143 414484370 1.030000e-80 311.0
15 TraesCS1B01G313600 chr1D 94.611 167 7 1 3076 3240 414484989 414485155 1.360000e-64 257.0
16 TraesCS1B01G313600 chr1D 91.925 161 8 3 3433 3589 414485326 414485485 1.780000e-53 220.0
17 TraesCS1B01G313600 chr1D 98.347 121 2 0 1327 1447 414481958 414482078 2.980000e-51 213.0
18 TraesCS1B01G313600 chr1D 92.908 141 5 2 3311 3448 414485173 414485311 2.320000e-47 200.0
19 TraesCS1B01G313600 chr1D 84.466 103 15 1 224 326 457954169 457954270 2.420000e-17 100.0
20 TraesCS1B01G313600 chr5A 76.117 515 119 4 1289 1801 23614314 23613802 2.250000e-67 267.0
21 TraesCS1B01G313600 chr5B 76.773 409 89 6 1382 1787 26007469 26007874 1.380000e-54 224.0
22 TraesCS1B01G313600 chr2A 72.447 421 95 17 1385 1790 734758673 734759087 8.640000e-22 115.0
23 TraesCS1B01G313600 chr6B 93.333 45 2 1 3264 3308 28164898 28164941 8.830000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G313600 chr1B 537657038 537660843 3805 False 7029.000000 7029 100.000000 1 3806 1 chr1B.!!$F1 3805
1 TraesCS1B01G313600 chr1B 559332535 559335684 3149 False 4876.000000 4876 94.544000 3 3176 1 chr1B.!!$F2 3173
2 TraesCS1B01G313600 chr1A 511147344 511151088 3744 False 1812.333333 3550 92.769000 39 3806 3 chr1A.!!$F4 3767
3 TraesCS1B01G313600 chr1A 511224714 511225567 853 False 1273.000000 1273 93.418000 1814 2679 1 chr1A.!!$F1 865
4 TraesCS1B01G313600 chr1A 558032191 558033697 1506 False 756.000000 756 76.287000 1035 2529 1 chr1A.!!$F3 1494
5 TraesCS1B01G313600 chr1A 511240584 511241665 1081 False 608.500000 686 91.214500 2720 3806 2 chr1A.!!$F5 1086
6 TraesCS1B01G313600 chr1D 414442892 414443720 828 False 1347.000000 1347 96.019000 10 837 1 chr1D.!!$F1 827
7 TraesCS1B01G313600 chr1D 414451241 414451746 505 False 830.000000 830 96.245000 830 1335 1 chr1D.!!$F2 505
8 TraesCS1B01G313600 chr1D 414481958 414485485 3527 False 577.666667 2265 94.143667 1327 3589 6 chr1D.!!$F4 2262
9 TraesCS1B01G313600 chr5A 23613802 23614314 512 True 267.000000 267 76.117000 1289 1801 1 chr5A.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 396 1.005630 GCTATTCATCTCGCCGGCT 60.006 57.895 26.68 1.35 0.00 5.52 F
1498 2157 0.702316 ACTCCCGGGTAATTTTGCCT 59.298 50.000 22.86 0.00 33.03 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2930 0.656259 CTGGATCTGCATGAACAGCG 59.344 55.0 0.0 0.0 37.59 5.18 R
3282 4662 0.455815 CCGCTCCCAAAATAAGTGGC 59.544 55.0 0.0 0.0 34.21 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.297315 CCTCCTGGAAGAAAAGGCAAAC 59.703 50.000 0.00 0.00 34.07 2.93
42 43 5.600484 TCCTGGAAGAAAAGGCAAACATTTA 59.400 36.000 0.00 0.00 34.07 1.40
72 77 4.554036 GATCCCAGCTGACCCCGC 62.554 72.222 17.39 0.00 0.00 6.13
268 274 1.160329 CGTGAAATCCATCCTCCGCC 61.160 60.000 0.00 0.00 0.00 6.13
390 396 1.005630 GCTATTCATCTCGCCGGCT 60.006 57.895 26.68 1.35 0.00 5.52
642 658 2.043227 GGATTCGATTCCAGGAGGAGT 58.957 52.381 19.15 0.00 46.74 3.85
837 853 1.815003 GCTAAGCTGATGCCAGTGTTT 59.185 47.619 0.00 0.00 42.35 2.83
869 885 7.224297 GGATTTCTGCATTGGGTTATAGACTA 58.776 38.462 0.00 0.00 0.00 2.59
929 945 2.223456 CGTTCTCTGTCGCAGATGAGAT 60.223 50.000 9.47 0.00 43.96 2.75
1041 1057 2.893215 TCTTCGAGGTTCCAGGAGTA 57.107 50.000 0.00 0.00 0.00 2.59
1053 1069 3.884467 AGGAGTACACCTGGTGGAA 57.116 52.632 29.05 15.08 39.01 3.53
1148 1173 4.080863 GGACTGTAACTCTGGTGATTGGAT 60.081 45.833 0.00 0.00 0.00 3.41
1168 1193 2.363683 TGTTGGCACATCGCATTGATA 58.636 42.857 0.00 0.00 45.17 2.15
1337 1382 4.381292 GGAAACCATTCTTGCAATCAGAGG 60.381 45.833 0.00 1.45 35.79 3.69
1498 2157 0.702316 ACTCCCGGGTAATTTTGCCT 59.298 50.000 22.86 0.00 33.03 4.75
1864 2532 2.094078 TCGATGATGCATGACAGTGTCA 60.094 45.455 27.35 27.35 46.90 3.58
1888 2556 5.645497 AGTACACCAGAAGATCATGCTTTTC 59.355 40.000 0.00 0.00 0.00 2.29
2168 2836 4.674211 GTCGTATAACATTGCGACTAGGAC 59.326 45.833 8.41 0.00 46.74 3.85
2182 2850 2.631062 ACTAGGACGTTTGGTGTCATCA 59.369 45.455 0.00 0.00 38.10 3.07
2183 2851 2.631160 AGGACGTTTGGTGTCATCAA 57.369 45.000 0.00 0.00 38.10 2.57
2262 2930 4.566426 AGAGCTTGAGGGGATATTATGC 57.434 45.455 0.00 0.00 0.00 3.14
2440 3122 1.133790 GAATCATGCTGAACACAGGGC 59.866 52.381 0.00 0.00 32.85 5.19
2530 3212 2.245159 TGTCACAAGTTCAGAGCAGG 57.755 50.000 0.00 0.00 0.00 4.85
2689 3371 1.295357 TACGTGCTCCAATGGCGTTG 61.295 55.000 12.54 12.54 37.05 4.10
2734 3416 6.668283 TCCTCTAGACAGTAAAGTTATGCCTT 59.332 38.462 0.00 0.00 0.00 4.35
2751 3433 4.877773 TGCCTTTGGTCCCAATGTTATAT 58.122 39.130 0.00 0.00 35.70 0.86
2754 3436 5.362430 GCCTTTGGTCCCAATGTTATATGAA 59.638 40.000 0.00 0.00 35.70 2.57
2790 3472 0.179134 TTCCCCGTGTTTGCAAAACG 60.179 50.000 26.09 26.09 37.07 3.60
2910 3651 6.151144 GTGGAAACTGCAATTGTACTCCTATT 59.849 38.462 7.40 0.00 0.00 1.73
2911 3652 7.335924 GTGGAAACTGCAATTGTACTCCTATTA 59.664 37.037 7.40 0.00 0.00 0.98
2988 3730 7.531857 TTTATAATTGTCTGTTGGGAAAGCA 57.468 32.000 0.00 0.00 0.00 3.91
3050 3794 6.531594 GGGTTCAAGATTTACTTTTGCTATGC 59.468 38.462 0.00 0.00 36.61 3.14
3088 3835 1.156736 CTTGTTAGACCTGGTTGCCG 58.843 55.000 0.00 0.00 0.00 5.69
3101 4479 1.750018 TTGCCGATGCCAGGACATG 60.750 57.895 0.00 0.00 36.33 3.21
3187 4565 0.183492 ATGGTGGCGTGGCTGATTAT 59.817 50.000 0.00 0.00 0.00 1.28
3243 4623 3.338249 CTGGGGAGTGTCAAATGTACTG 58.662 50.000 0.00 0.00 0.00 2.74
3244 4624 2.708861 TGGGGAGTGTCAAATGTACTGT 59.291 45.455 0.00 0.00 0.00 3.55
3245 4625 3.904965 TGGGGAGTGTCAAATGTACTGTA 59.095 43.478 0.00 0.00 0.00 2.74
3246 4626 4.251268 GGGGAGTGTCAAATGTACTGTAC 58.749 47.826 10.98 10.98 0.00 2.90
3249 4629 5.488341 GGAGTGTCAAATGTACTGTACCAT 58.512 41.667 14.91 6.34 0.00 3.55
3250 4630 6.351541 GGGAGTGTCAAATGTACTGTACCATA 60.352 42.308 14.91 0.00 0.00 2.74
3252 4632 7.277981 GGAGTGTCAAATGTACTGTACCATAAG 59.722 40.741 14.91 2.57 0.00 1.73
3253 4633 7.676947 AGTGTCAAATGTACTGTACCATAAGT 58.323 34.615 14.91 0.00 0.00 2.24
3254 4634 8.809066 AGTGTCAAATGTACTGTACCATAAGTA 58.191 33.333 14.91 0.00 0.00 2.24
3270 4650 8.575649 ACCATAAGTACTCCCACTAAATTTTG 57.424 34.615 0.00 0.00 0.00 2.44
3271 4651 8.168058 ACCATAAGTACTCCCACTAAATTTTGT 58.832 33.333 0.00 0.00 0.00 2.83
3272 4652 9.675464 CCATAAGTACTCCCACTAAATTTTGTA 57.325 33.333 4.94 0.00 0.00 2.41
3275 4655 8.983702 AAGTACTCCCACTAAATTTTGTACAA 57.016 30.769 3.59 3.59 33.62 2.41
3279 4659 8.301252 ACTCCCACTAAATTTTGTACAAACTT 57.699 30.769 20.43 17.91 0.00 2.66
3280 4660 8.194769 ACTCCCACTAAATTTTGTACAAACTTG 58.805 33.333 20.43 12.47 0.00 3.16
3281 4661 8.294954 TCCCACTAAATTTTGTACAAACTTGA 57.705 30.769 20.43 13.41 0.00 3.02
3282 4662 8.410141 TCCCACTAAATTTTGTACAAACTTGAG 58.590 33.333 24.25 24.25 31.41 3.02
3283 4663 7.169140 CCCACTAAATTTTGTACAAACTTGAGC 59.831 37.037 25.17 0.00 29.33 4.26
3284 4664 7.169140 CCACTAAATTTTGTACAAACTTGAGCC 59.831 37.037 25.17 0.00 29.33 4.70
3286 4666 6.902224 AAATTTTGTACAAACTTGAGCCAC 57.098 33.333 20.43 0.00 0.00 5.01
3287 4667 5.852282 ATTTTGTACAAACTTGAGCCACT 57.148 34.783 20.43 0.00 0.00 4.00
3288 4668 5.652994 TTTTGTACAAACTTGAGCCACTT 57.347 34.783 20.43 0.00 0.00 3.16
3290 4670 6.952773 TTTGTACAAACTTGAGCCACTTAT 57.047 33.333 17.01 0.00 0.00 1.73
3291 4671 6.952773 TTGTACAAACTTGAGCCACTTATT 57.047 33.333 5.64 0.00 0.00 1.40
3292 4672 6.952773 TGTACAAACTTGAGCCACTTATTT 57.047 33.333 0.00 0.00 0.00 1.40
3293 4673 7.341445 TGTACAAACTTGAGCCACTTATTTT 57.659 32.000 0.00 0.00 0.00 1.82
3295 4675 5.600696 ACAAACTTGAGCCACTTATTTTGG 58.399 37.500 0.00 0.00 37.17 3.28
3296 4676 4.871933 AACTTGAGCCACTTATTTTGGG 57.128 40.909 0.00 0.00 34.35 4.12
3297 4677 4.112634 ACTTGAGCCACTTATTTTGGGA 57.887 40.909 0.00 0.00 34.35 4.37
3298 4678 4.082125 ACTTGAGCCACTTATTTTGGGAG 58.918 43.478 0.00 0.00 34.35 4.30
3300 4680 1.401905 GAGCCACTTATTTTGGGAGCG 59.598 52.381 0.00 0.00 34.35 5.03
3301 4681 0.455815 GCCACTTATTTTGGGAGCGG 59.544 55.000 0.00 0.00 34.35 5.52
3302 4682 1.953311 GCCACTTATTTTGGGAGCGGA 60.953 52.381 0.00 0.00 34.35 5.54
3303 4683 2.017049 CCACTTATTTTGGGAGCGGAG 58.983 52.381 0.00 0.00 0.00 4.63
3304 4684 2.017049 CACTTATTTTGGGAGCGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
3307 4687 0.837272 TATTTTGGGAGCGGAGGGAG 59.163 55.000 0.00 0.00 0.00 4.30
3367 4749 1.978580 AGGGAACAACTGGAGGTGTAG 59.021 52.381 0.00 0.00 0.00 2.74
3390 4775 1.409064 GCGTGGGTCAGATCATACAGA 59.591 52.381 0.00 0.00 0.00 3.41
3391 4776 2.036475 GCGTGGGTCAGATCATACAGAT 59.964 50.000 0.00 0.00 40.48 2.90
3485 4906 2.300152 CGGGCCAGCATCTTTCTATCTA 59.700 50.000 4.39 0.00 0.00 1.98
3705 5131 7.148171 GCTCATAACCAAGAAGCTTAATGACTT 60.148 37.037 0.00 0.00 0.00 3.01
3782 5208 0.319728 TCCAGTCAGAGAGCAACTGC 59.680 55.000 0.00 0.00 39.23 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.704007 GGAGGGGGAGGAAGCAGATG 61.704 65.000 0.00 0.00 0.00 2.90
15 16 0.405585 TGCCTTTTCTTCCAGGAGGG 59.594 55.000 0.00 0.00 34.83 4.30
37 38 7.572724 GCTGGGATCGATTCTGAAGAATAAATG 60.573 40.741 3.13 0.00 44.14 2.32
42 43 3.390639 AGCTGGGATCGATTCTGAAGAAT 59.609 43.478 3.13 5.23 46.54 2.40
72 77 1.942657 CTGCGTGTCAATTGGATAGGG 59.057 52.381 5.42 0.00 0.00 3.53
252 258 0.250510 GGAGGCGGAGGATGGATTTC 60.251 60.000 0.00 0.00 0.00 2.17
358 364 1.937546 AATAGCAGCTTTGGTGGCGC 61.938 55.000 0.00 0.00 34.52 6.53
390 396 2.258591 GTGGAGTCGAAGCTCGCA 59.741 61.111 0.00 0.00 40.21 5.10
642 658 4.220724 ACAACCTCACTACCTTGTACTCA 58.779 43.478 0.00 0.00 0.00 3.41
753 769 1.357272 ACCTAAAGGGCACACCACCA 61.357 55.000 0.20 0.00 43.89 4.17
801 817 2.169832 TAGCTTCACTCTGTGTTGCC 57.830 50.000 0.00 0.00 35.17 4.52
869 885 3.117888 TGGCTTTGTGAGGAAAAGAGACT 60.118 43.478 0.25 0.00 36.88 3.24
929 945 3.056107 CGGTGACCTGAACCATCTAAAGA 60.056 47.826 0.00 0.00 37.57 2.52
1041 1057 1.774254 TCATCAAGTTCCACCAGGTGT 59.226 47.619 18.82 0.00 35.89 4.16
1053 1069 4.202461 ACCATACACAAGTGGTCATCAAGT 60.202 41.667 5.08 0.00 45.30 3.16
1123 1148 4.263068 CCAATCACCAGAGTTACAGTCCTT 60.263 45.833 0.00 0.00 0.00 3.36
1148 1173 1.175654 ATCAATGCGATGTGCCAACA 58.824 45.000 0.00 0.00 45.60 3.33
1168 1193 7.706179 CAAACCTCTTTGAACATGTTGTAACAT 59.294 33.333 17.58 4.48 43.29 2.71
1197 1225 5.023533 TGACTCTAATAATTTGCGGCTCT 57.976 39.130 0.00 0.00 0.00 4.09
1864 2532 4.833478 AAGCATGATCTTCTGGTGTACT 57.167 40.909 0.00 0.00 0.00 2.73
1888 2556 0.667993 ACATTCCTGTTGCCAACACG 59.332 50.000 6.08 3.05 36.25 4.49
2168 2836 1.334960 GGCAGTTGATGACACCAAACG 60.335 52.381 0.00 0.00 36.67 3.60
2182 2850 1.377725 CGATGCTTGAGGGGCAGTT 60.378 57.895 0.00 0.00 43.15 3.16
2183 2851 2.270205 CGATGCTTGAGGGGCAGT 59.730 61.111 0.00 0.00 43.15 4.40
2262 2930 0.656259 CTGGATCTGCATGAACAGCG 59.344 55.000 0.00 0.00 37.59 5.18
2440 3122 4.887071 TGGATCATAAAGACCCAATTTCCG 59.113 41.667 0.00 0.00 0.00 4.30
2652 3334 5.569413 CACGTAAATTGCTTCCCAGATAAC 58.431 41.667 0.00 0.00 0.00 1.89
2689 3371 1.705745 AGTTCTCCCCTCCAAAGGTTC 59.294 52.381 0.00 0.00 41.59 3.62
2715 3397 5.631119 ACCAAAGGCATAACTTTACTGTCT 58.369 37.500 0.00 0.00 38.56 3.41
2734 3416 7.206789 TCTCTTCATATAACATTGGGACCAA 57.793 36.000 6.20 6.20 40.47 3.67
2790 3472 3.059352 ACACATCAGCTTAACCACCTC 57.941 47.619 0.00 0.00 0.00 3.85
2867 3608 3.262405 TCCACCACCTATGTTGAGTAACC 59.738 47.826 0.00 0.00 35.92 2.85
2965 3707 7.716799 ATGCTTTCCCAACAGACAATTATAA 57.283 32.000 0.00 0.00 0.00 0.98
3026 3769 7.090173 TGCATAGCAAAAGTAAATCTTGAACC 58.910 34.615 0.00 0.00 34.76 3.62
3050 3794 9.755064 CTAACAAGGAAAACGATAATACACTTG 57.245 33.333 0.00 0.00 38.85 3.16
3062 3806 3.473625 ACCAGGTCTAACAAGGAAAACG 58.526 45.455 0.00 0.00 0.00 3.60
3088 3835 1.605710 GCATACACATGTCCTGGCATC 59.394 52.381 0.00 0.00 34.40 3.91
3221 4601 2.084546 GTACATTTGACACTCCCCAGC 58.915 52.381 0.00 0.00 0.00 4.85
3244 4624 9.675464 CAAAATTTAGTGGGAGTACTTATGGTA 57.325 33.333 0.00 0.00 32.19 3.25
3245 4625 8.168058 ACAAAATTTAGTGGGAGTACTTATGGT 58.832 33.333 0.00 0.00 32.19 3.55
3246 4626 8.575649 ACAAAATTTAGTGGGAGTACTTATGG 57.424 34.615 0.00 0.00 32.19 2.74
3250 4630 8.983702 TTGTACAAAATTTAGTGGGAGTACTT 57.016 30.769 5.64 0.00 33.62 2.24
3252 4632 8.843262 AGTTTGTACAAAATTTAGTGGGAGTAC 58.157 33.333 22.14 5.33 31.33 2.73
3253 4633 8.983702 AGTTTGTACAAAATTTAGTGGGAGTA 57.016 30.769 22.14 0.00 31.33 2.59
3254 4634 7.891498 AGTTTGTACAAAATTTAGTGGGAGT 57.109 32.000 22.14 0.00 31.33 3.85
3255 4635 8.410141 TCAAGTTTGTACAAAATTTAGTGGGAG 58.590 33.333 26.49 15.19 36.60 4.30
3256 4636 8.294954 TCAAGTTTGTACAAAATTTAGTGGGA 57.705 30.769 26.49 18.04 36.60 4.37
3257 4637 7.169140 GCTCAAGTTTGTACAAAATTTAGTGGG 59.831 37.037 28.99 21.29 36.60 4.61
3258 4638 7.169140 GGCTCAAGTTTGTACAAAATTTAGTGG 59.831 37.037 28.99 19.71 36.60 4.00
3259 4639 7.704472 TGGCTCAAGTTTGTACAAAATTTAGTG 59.296 33.333 28.99 20.74 36.60 2.74
3260 4640 7.704899 GTGGCTCAAGTTTGTACAAAATTTAGT 59.295 33.333 28.99 12.60 36.60 2.24
3261 4641 7.920682 AGTGGCTCAAGTTTGTACAAAATTTAG 59.079 33.333 26.63 26.63 36.60 1.85
3262 4642 7.777095 AGTGGCTCAAGTTTGTACAAAATTTA 58.223 30.769 26.49 19.53 36.60 1.40
3265 4645 5.852282 AGTGGCTCAAGTTTGTACAAAAT 57.148 34.783 22.14 18.63 31.33 1.82
3266 4646 5.652994 AAGTGGCTCAAGTTTGTACAAAA 57.347 34.783 22.14 6.45 31.33 2.44
3267 4647 6.952773 ATAAGTGGCTCAAGTTTGTACAAA 57.047 33.333 17.01 17.01 0.00 2.83
3270 4650 6.640907 CCAAAATAAGTGGCTCAAGTTTGTAC 59.359 38.462 11.24 0.00 0.00 2.90
3271 4651 6.239176 CCCAAAATAAGTGGCTCAAGTTTGTA 60.239 38.462 11.24 0.00 34.56 2.41
3272 4652 5.453198 CCCAAAATAAGTGGCTCAAGTTTGT 60.453 40.000 11.24 0.00 34.56 2.83
3273 4653 4.990426 CCCAAAATAAGTGGCTCAAGTTTG 59.010 41.667 7.45 7.45 34.56 2.93
3274 4654 4.898861 TCCCAAAATAAGTGGCTCAAGTTT 59.101 37.500 0.00 0.00 34.56 2.66
3275 4655 4.479158 TCCCAAAATAAGTGGCTCAAGTT 58.521 39.130 0.00 0.00 34.56 2.66
3279 4659 2.446435 GCTCCCAAAATAAGTGGCTCA 58.554 47.619 0.00 0.00 34.56 4.26
3280 4660 1.401905 CGCTCCCAAAATAAGTGGCTC 59.598 52.381 0.00 0.00 34.56 4.70
3281 4661 1.463674 CGCTCCCAAAATAAGTGGCT 58.536 50.000 0.00 0.00 34.56 4.75
3282 4662 0.455815 CCGCTCCCAAAATAAGTGGC 59.544 55.000 0.00 0.00 34.21 5.01
3283 4663 2.017049 CTCCGCTCCCAAAATAAGTGG 58.983 52.381 0.00 0.00 41.15 4.00
3284 4664 2.017049 CCTCCGCTCCCAAAATAAGTG 58.983 52.381 0.00 0.00 0.00 3.16
3286 4666 1.211949 TCCCTCCGCTCCCAAAATAAG 59.788 52.381 0.00 0.00 0.00 1.73
3287 4667 1.211949 CTCCCTCCGCTCCCAAAATAA 59.788 52.381 0.00 0.00 0.00 1.40
3288 4668 0.837272 CTCCCTCCGCTCCCAAAATA 59.163 55.000 0.00 0.00 0.00 1.40
3290 4670 1.131303 TTCTCCCTCCGCTCCCAAAA 61.131 55.000 0.00 0.00 0.00 2.44
3291 4671 1.537889 TTCTCCCTCCGCTCCCAAA 60.538 57.895 0.00 0.00 0.00 3.28
3292 4672 1.990060 CTTCTCCCTCCGCTCCCAA 60.990 63.158 0.00 0.00 0.00 4.12
3293 4673 2.364317 CTTCTCCCTCCGCTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
3295 4675 0.833949 AATTCTTCTCCCTCCGCTCC 59.166 55.000 0.00 0.00 0.00 4.70
3296 4676 2.700722 AAATTCTTCTCCCTCCGCTC 57.299 50.000 0.00 0.00 0.00 5.03
3297 4677 3.181450 CCATAAATTCTTCTCCCTCCGCT 60.181 47.826 0.00 0.00 0.00 5.52
3298 4678 3.142174 CCATAAATTCTTCTCCCTCCGC 58.858 50.000 0.00 0.00 0.00 5.54
3300 4680 4.170468 TGCCATAAATTCTTCTCCCTCC 57.830 45.455 0.00 0.00 0.00 4.30
3301 4681 5.196695 ACTTGCCATAAATTCTTCTCCCTC 58.803 41.667 0.00 0.00 0.00 4.30
3302 4682 5.196695 GACTTGCCATAAATTCTTCTCCCT 58.803 41.667 0.00 0.00 0.00 4.20
3303 4683 4.339530 GGACTTGCCATAAATTCTTCTCCC 59.660 45.833 0.00 0.00 36.34 4.30
3304 4684 5.196695 AGGACTTGCCATAAATTCTTCTCC 58.803 41.667 0.00 0.00 40.02 3.71
3307 4687 6.515272 TCAAGGACTTGCCATAAATTCTTC 57.485 37.500 7.18 0.00 40.24 2.87
3367 4749 1.933853 GTATGATCTGACCCACGCAAC 59.066 52.381 0.00 0.00 0.00 4.17
3390 4775 7.268586 ACAGTGCTTGAAAATAGTCGATCTAT 58.731 34.615 0.00 0.00 40.68 1.98
3391 4776 6.631016 ACAGTGCTTGAAAATAGTCGATCTA 58.369 36.000 0.00 0.00 0.00 1.98
3705 5131 3.817709 TCACGGCACATAGATGATTCA 57.182 42.857 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.