Multiple sequence alignment - TraesCS1B01G313300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G313300 | chr1B | 100.000 | 4191 | 0 | 0 | 1 | 4191 | 536777052 | 536772862 | 0.000000e+00 | 7740.0 |
1 | TraesCS1B01G313300 | chr1B | 93.372 | 347 | 20 | 1 | 379 | 722 | 647910408 | 647910062 | 1.040000e-140 | 510.0 |
2 | TraesCS1B01G313300 | chr1B | 88.889 | 63 | 7 | 0 | 3803 | 3865 | 68073372 | 68073310 | 1.250000e-10 | 78.7 |
3 | TraesCS1B01G313300 | chr1D | 92.372 | 2635 | 105 | 35 | 772 | 3373 | 400066935 | 400064364 | 0.000000e+00 | 3664.0 |
4 | TraesCS1B01G313300 | chr1D | 93.590 | 390 | 23 | 1 | 3804 | 4191 | 400063574 | 400063185 | 7.810000e-162 | 580.0 |
5 | TraesCS1B01G313300 | chr1D | 84.211 | 247 | 31 | 3 | 3521 | 3759 | 400064024 | 400063778 | 2.520000e-57 | 233.0 |
6 | TraesCS1B01G313300 | chr1D | 96.721 | 61 | 2 | 0 | 774 | 834 | 400070207 | 400070147 | 7.410000e-18 | 102.0 |
7 | TraesCS1B01G313300 | chr1D | 88.889 | 63 | 7 | 0 | 3803 | 3865 | 48391358 | 48391296 | 1.250000e-10 | 78.7 |
8 | TraesCS1B01G313300 | chr1A | 92.888 | 2278 | 107 | 21 | 774 | 3000 | 496482564 | 496480291 | 0.000000e+00 | 3258.0 |
9 | TraesCS1B01G313300 | chr1A | 86.631 | 561 | 45 | 9 | 2828 | 3373 | 496480507 | 496479962 | 1.000000e-165 | 593.0 |
10 | TraesCS1B01G313300 | chr1A | 93.077 | 390 | 25 | 1 | 3804 | 4191 | 496479202 | 496478813 | 1.690000e-158 | 569.0 |
11 | TraesCS1B01G313300 | chr1A | 84.746 | 177 | 21 | 5 | 3516 | 3687 | 496479563 | 496479388 | 5.570000e-39 | 172.0 |
12 | TraesCS1B01G313300 | chr3A | 91.678 | 733 | 35 | 2 | 1 | 707 | 514261839 | 514262571 | 0.000000e+00 | 992.0 |
13 | TraesCS1B01G313300 | chr3B | 94.621 | 409 | 18 | 2 | 307 | 711 | 82309234 | 82308826 | 7.650000e-177 | 630.0 |
14 | TraesCS1B01G313300 | chr3B | 94.294 | 333 | 18 | 1 | 379 | 711 | 181333915 | 181334246 | 3.740000e-140 | 508.0 |
15 | TraesCS1B01G313300 | chr3B | 90.390 | 333 | 9 | 2 | 1 | 311 | 82338664 | 82338333 | 2.330000e-112 | 416.0 |
16 | TraesCS1B01G313300 | chr7D | 96.697 | 333 | 11 | 0 | 379 | 711 | 428708631 | 428708963 | 4.730000e-154 | 555.0 |
17 | TraesCS1B01G313300 | chr7D | 90.164 | 61 | 6 | 0 | 3803 | 3863 | 494749890 | 494749950 | 3.470000e-11 | 80.5 |
18 | TraesCS1B01G313300 | chr3D | 94.294 | 333 | 19 | 0 | 379 | 711 | 424472246 | 424471914 | 1.040000e-140 | 510.0 |
19 | TraesCS1B01G313300 | chr3D | 89.231 | 65 | 6 | 1 | 3799 | 3863 | 71517781 | 71517844 | 3.470000e-11 | 80.5 |
20 | TraesCS1B01G313300 | chrUn | 95.848 | 289 | 9 | 1 | 422 | 707 | 439380380 | 439380668 | 8.210000e-127 | 464.0 |
21 | TraesCS1B01G313300 | chr5D | 96.113 | 283 | 10 | 1 | 429 | 711 | 526270064 | 526269783 | 1.060000e-125 | 460.0 |
22 | TraesCS1B01G313300 | chr7A | 91.592 | 333 | 20 | 2 | 379 | 711 | 364464013 | 364463689 | 1.780000e-123 | 453.0 |
23 | TraesCS1B01G313300 | chr7A | 90.476 | 63 | 5 | 1 | 3794 | 3856 | 187460737 | 187460676 | 9.660000e-12 | 82.4 |
24 | TraesCS1B01G313300 | chr6B | 93.103 | 58 | 4 | 0 | 3802 | 3859 | 470793477 | 470793420 | 7.470000e-13 | 86.1 |
25 | TraesCS1B01G313300 | chr7B | 90.164 | 61 | 6 | 0 | 3803 | 3863 | 522721419 | 522721479 | 3.470000e-11 | 80.5 |
26 | TraesCS1B01G313300 | chr2B | 89.796 | 49 | 4 | 1 | 664 | 711 | 424379676 | 424379628 | 1.260000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G313300 | chr1B | 536772862 | 536777052 | 4190 | True | 7740.00 | 7740 | 100.0000 | 1 | 4191 | 1 | chr1B.!!$R2 | 4190 |
1 | TraesCS1B01G313300 | chr1D | 400063185 | 400070207 | 7022 | True | 1144.75 | 3664 | 91.7235 | 772 | 4191 | 4 | chr1D.!!$R2 | 3419 |
2 | TraesCS1B01G313300 | chr1A | 496478813 | 496482564 | 3751 | True | 1148.00 | 3258 | 89.3355 | 774 | 4191 | 4 | chr1A.!!$R1 | 3417 |
3 | TraesCS1B01G313300 | chr3A | 514261839 | 514262571 | 732 | False | 992.00 | 992 | 91.6780 | 1 | 707 | 1 | chr3A.!!$F1 | 706 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
566 | 593 | 0.040336 | ACTATATGTGAGCCGCGACG | 60.040 | 55.0 | 8.23 | 0.0 | 0.00 | 5.12 | F |
1947 | 5281 | 0.482446 | TGGAGGCAAGTCCATTTGGT | 59.518 | 50.0 | 0.00 | 0.0 | 41.99 | 3.67 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2146 | 5497 | 0.032540 | TCATCATCGGCGACATGAGG | 59.967 | 55.0 | 22.79 | 19.81 | 33.48 | 3.86 | R |
3226 | 6606 | 0.038983 | TGCGTGCGTGTACATACAGT | 60.039 | 50.0 | 0.00 | 0.00 | 36.78 | 3.55 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 4.070716 | GCGAATCCATTCCATGAATCTCT | 58.929 | 43.478 | 0.00 | 0.00 | 33.28 | 3.10 |
44 | 45 | 4.698304 | TCTCCTCTCTCTTTTCTTCTCGTC | 59.302 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
99 | 104 | 3.118482 | TGCAAGTCAATCCTGATCTCTCC | 60.118 | 47.826 | 0.00 | 0.00 | 33.05 | 3.71 |
241 | 268 | 2.409651 | GTGAGCTCGCCTCTACCG | 59.590 | 66.667 | 16.69 | 0.00 | 41.35 | 4.02 |
249 | 276 | 3.445888 | GCCTCTACCGGCCTCTAC | 58.554 | 66.667 | 0.00 | 0.00 | 44.41 | 2.59 |
320 | 347 | 0.472161 | GGAGTACCCCATCCTCCTCC | 60.472 | 65.000 | 0.00 | 0.00 | 41.31 | 4.30 |
408 | 435 | 2.586079 | CACATAGGCGAGCACCGG | 60.586 | 66.667 | 0.00 | 0.00 | 39.04 | 5.28 |
566 | 593 | 0.040336 | ACTATATGTGAGCCGCGACG | 60.040 | 55.000 | 8.23 | 0.00 | 0.00 | 5.12 |
617 | 644 | 0.974383 | GGAAGGAGTGGAAGAACCGA | 59.026 | 55.000 | 0.00 | 0.00 | 42.61 | 4.69 |
677 | 704 | 1.102978 | GAGTGGTGTGGCAGTTTTGT | 58.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
682 | 709 | 2.292016 | TGGTGTGGCAGTTTTGTAATCG | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
689 | 716 | 2.668279 | GCAGTTTTGTAATCGGGCACAG | 60.668 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
707 | 734 | 4.582656 | GCACAGGGTTGCCAAATACATATA | 59.417 | 41.667 | 0.00 | 0.00 | 36.42 | 0.86 |
708 | 735 | 5.243730 | GCACAGGGTTGCCAAATACATATAT | 59.756 | 40.000 | 0.00 | 0.00 | 36.42 | 0.86 |
709 | 736 | 6.570378 | GCACAGGGTTGCCAAATACATATATC | 60.570 | 42.308 | 0.00 | 0.00 | 36.42 | 1.63 |
710 | 737 | 5.705441 | ACAGGGTTGCCAAATACATATATCG | 59.295 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
711 | 738 | 5.937540 | CAGGGTTGCCAAATACATATATCGA | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
712 | 739 | 6.429692 | CAGGGTTGCCAAATACATATATCGAA | 59.570 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
713 | 740 | 7.121168 | CAGGGTTGCCAAATACATATATCGAAT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
714 | 741 | 7.121168 | AGGGTTGCCAAATACATATATCGAATG | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
715 | 742 | 7.094377 | GGGTTGCCAAATACATATATCGAATGT | 60.094 | 37.037 | 6.47 | 6.47 | 40.57 | 2.71 |
716 | 743 | 8.296713 | GGTTGCCAAATACATATATCGAATGTT | 58.703 | 33.333 | 6.54 | 0.00 | 38.49 | 2.71 |
717 | 744 | 9.329913 | GTTGCCAAATACATATATCGAATGTTC | 57.670 | 33.333 | 6.54 | 0.00 | 38.49 | 3.18 |
718 | 745 | 8.614469 | TGCCAAATACATATATCGAATGTTCA | 57.386 | 30.769 | 6.54 | 0.00 | 38.49 | 3.18 |
719 | 746 | 9.061435 | TGCCAAATACATATATCGAATGTTCAA | 57.939 | 29.630 | 6.54 | 0.00 | 38.49 | 2.69 |
720 | 747 | 9.891828 | GCCAAATACATATATCGAATGTTCAAA | 57.108 | 29.630 | 6.54 | 0.00 | 38.49 | 2.69 |
758 | 785 | 9.228949 | AGTACAATGTATCCTACTCTATTACGG | 57.771 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
759 | 786 | 9.224267 | GTACAATGTATCCTACTCTATTACGGA | 57.776 | 37.037 | 0.00 | 0.00 | 0.00 | 4.69 |
760 | 787 | 8.338072 | ACAATGTATCCTACTCTATTACGGAG | 57.662 | 38.462 | 0.00 | 0.00 | 36.92 | 4.63 |
762 | 789 | 9.445878 | CAATGTATCCTACTCTATTACGGAGTA | 57.554 | 37.037 | 0.00 | 0.00 | 45.11 | 2.59 |
789 | 816 | 7.123160 | TGATTACGAATGAAAATTCACGTCA | 57.877 | 32.000 | 13.01 | 5.67 | 39.53 | 4.35 |
848 | 4149 | 1.070038 | CTAAAAACGCGGGCGAGTTA | 58.930 | 50.000 | 20.98 | 12.47 | 42.83 | 2.24 |
1460 | 4769 | 1.410882 | CTTTCTCCCATCTCCTCCGTC | 59.589 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
1475 | 4784 | 3.115892 | GTCGCCGTTGCCGAATCA | 61.116 | 61.111 | 0.00 | 0.00 | 36.36 | 2.57 |
1604 | 4913 | 0.959553 | AAGACGAGACGAAGCAAGGA | 59.040 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1667 | 4976 | 1.783250 | AAAGTGCCCCCACAGAGGAG | 61.783 | 60.000 | 0.00 | 0.00 | 44.53 | 3.69 |
1743 | 5056 | 4.776837 | ACCTGTTCCATGGAAATATGCAAA | 59.223 | 37.500 | 28.64 | 0.10 | 35.75 | 3.68 |
1744 | 5057 | 5.426185 | ACCTGTTCCATGGAAATATGCAAAT | 59.574 | 36.000 | 28.64 | 9.72 | 35.75 | 2.32 |
1745 | 5058 | 5.756347 | CCTGTTCCATGGAAATATGCAAATG | 59.244 | 40.000 | 28.64 | 10.07 | 35.75 | 2.32 |
1747 | 5060 | 5.104859 | TGTTCCATGGAAATATGCAAATGCT | 60.105 | 36.000 | 28.64 | 0.00 | 37.65 | 3.79 |
1748 | 5061 | 4.951254 | TCCATGGAAATATGCAAATGCTG | 58.049 | 39.130 | 13.46 | 0.00 | 42.66 | 4.41 |
1808 | 5137 | 2.040278 | CCTCCCAACATTTCTCACCTCA | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1876 | 5210 | 1.142097 | GAGAGCCCTACGTTCCAGC | 59.858 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
1940 | 5274 | 3.984193 | ATGCGCTGGAGGCAAGTCC | 62.984 | 63.158 | 9.73 | 0.00 | 44.66 | 3.85 |
1941 | 5275 | 4.704833 | GCGCTGGAGGCAAGTCCA | 62.705 | 66.667 | 0.00 | 2.06 | 44.82 | 4.02 |
1947 | 5281 | 0.482446 | TGGAGGCAAGTCCATTTGGT | 59.518 | 50.000 | 0.00 | 0.00 | 41.99 | 3.67 |
1955 | 5290 | 4.020662 | GGCAAGTCCATTTGGTTAATTCCA | 60.021 | 41.667 | 0.00 | 0.00 | 36.34 | 3.53 |
1960 | 5295 | 3.192422 | TCCATTTGGTTAATTCCAGCGTG | 59.808 | 43.478 | 0.00 | 0.00 | 38.80 | 5.34 |
1961 | 5296 | 3.510719 | CATTTGGTTAATTCCAGCGTGG | 58.489 | 45.455 | 0.00 | 0.00 | 38.80 | 4.94 |
1965 | 5311 | 1.448985 | GTTAATTCCAGCGTGGCAGA | 58.551 | 50.000 | 0.00 | 0.00 | 37.47 | 4.26 |
2253 | 5604 | 2.093921 | CGTTGGTGTTGGGGTTTCTTTT | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
2264 | 5616 | 7.290248 | TGTTGGGGTTTCTTTTGTTATGGAATA | 59.710 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
2274 | 5626 | 6.683974 | TTTGTTATGGAATAAGAGCAGCTC | 57.316 | 37.500 | 15.25 | 15.25 | 39.94 | 4.09 |
2525 | 5877 | 4.560716 | CGTACTCCTGAAAGACATGGTTGA | 60.561 | 45.833 | 0.00 | 0.00 | 34.07 | 3.18 |
2689 | 6045 | 2.091610 | AGAGGACATCATCGAGGAGGAA | 60.092 | 50.000 | 19.38 | 0.00 | 0.00 | 3.36 |
2740 | 6099 | 4.252570 | AGAAGAATACGAGGAGGAGGAA | 57.747 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2807 | 6169 | 2.268920 | CCCCCTCACATCACACCG | 59.731 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
2887 | 6249 | 2.610859 | GCCCCCAAGTCTCCCTCA | 60.611 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2889 | 6251 | 1.538876 | CCCCCAAGTCTCCCTCACA | 60.539 | 63.158 | 0.00 | 0.00 | 0.00 | 3.58 |
2899 | 6261 | 2.509336 | CCCTCACATCGCACCGAC | 60.509 | 66.667 | 0.00 | 0.00 | 39.18 | 4.79 |
2905 | 6267 | 1.670730 | ACATCGCACCGACAATGCA | 60.671 | 52.632 | 0.00 | 0.00 | 43.57 | 3.96 |
2946 | 6308 | 4.717629 | CTCTCGCCGCACCGACAA | 62.718 | 66.667 | 0.00 | 0.00 | 33.12 | 3.18 |
2947 | 6309 | 3.989698 | CTCTCGCCGCACCGACAAT | 62.990 | 63.158 | 0.00 | 0.00 | 33.12 | 2.71 |
2948 | 6310 | 3.853330 | CTCGCCGCACCGACAATG | 61.853 | 66.667 | 0.00 | 0.00 | 33.12 | 2.82 |
2949 | 6311 | 4.673298 | TCGCCGCACCGACAATGT | 62.673 | 61.111 | 0.00 | 0.00 | 31.36 | 2.71 |
2950 | 6312 | 4.444024 | CGCCGCACCGACAATGTG | 62.444 | 66.667 | 0.00 | 0.00 | 36.79 | 3.21 |
2955 | 6317 | 4.063529 | CACCGACAATGTGCCAGT | 57.936 | 55.556 | 0.00 | 0.00 | 0.00 | 4.00 |
2956 | 6318 | 2.330254 | CACCGACAATGTGCCAGTT | 58.670 | 52.632 | 0.00 | 0.00 | 0.00 | 3.16 |
2957 | 6319 | 1.518325 | CACCGACAATGTGCCAGTTA | 58.482 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2958 | 6320 | 1.196808 | CACCGACAATGTGCCAGTTAC | 59.803 | 52.381 | 0.00 | 0.00 | 0.00 | 2.50 |
2959 | 6321 | 1.071699 | ACCGACAATGTGCCAGTTACT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2960 | 6322 | 1.464608 | CCGACAATGTGCCAGTTACTG | 59.535 | 52.381 | 5.22 | 5.22 | 0.00 | 2.74 |
2961 | 6323 | 2.143122 | CGACAATGTGCCAGTTACTGT | 58.857 | 47.619 | 11.68 | 0.00 | 0.00 | 3.55 |
2962 | 6324 | 2.157668 | CGACAATGTGCCAGTTACTGTC | 59.842 | 50.000 | 11.68 | 0.00 | 0.00 | 3.51 |
3057 | 6434 | 0.749091 | AGCACAGACAACAGCAGCAA | 60.749 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3213 | 6593 | 1.801309 | GCGGCCTTTGGTGTTTGCTA | 61.801 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3367 | 6747 | 5.982356 | TGGATCTGTGATTCTTAGTTCCTG | 58.018 | 41.667 | 13.86 | 0.00 | 33.48 | 3.86 |
3370 | 6750 | 6.705381 | GGATCTGTGATTCTTAGTTCCTGATG | 59.295 | 42.308 | 0.00 | 0.00 | 30.94 | 3.07 |
3371 | 6751 | 6.611613 | TCTGTGATTCTTAGTTCCTGATGT | 57.388 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
3372 | 6752 | 7.718334 | TCTGTGATTCTTAGTTCCTGATGTA | 57.282 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3373 | 6753 | 7.776107 | TCTGTGATTCTTAGTTCCTGATGTAG | 58.224 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
3375 | 6755 | 5.755861 | GTGATTCTTAGTTCCTGATGTAGGC | 59.244 | 44.000 | 0.00 | 0.00 | 46.87 | 3.93 |
3376 | 6756 | 4.755266 | TTCTTAGTTCCTGATGTAGGCC | 57.245 | 45.455 | 0.00 | 0.00 | 46.87 | 5.19 |
3377 | 6757 | 3.039011 | TCTTAGTTCCTGATGTAGGCCC | 58.961 | 50.000 | 0.00 | 0.00 | 46.87 | 5.80 |
3378 | 6758 | 2.868964 | TAGTTCCTGATGTAGGCCCT | 57.131 | 50.000 | 0.00 | 0.00 | 46.87 | 5.19 |
3379 | 6759 | 1.207791 | AGTTCCTGATGTAGGCCCTG | 58.792 | 55.000 | 0.00 | 0.00 | 46.87 | 4.45 |
3380 | 6760 | 0.912486 | GTTCCTGATGTAGGCCCTGT | 59.088 | 55.000 | 0.00 | 0.00 | 46.87 | 4.00 |
3381 | 6761 | 1.282157 | GTTCCTGATGTAGGCCCTGTT | 59.718 | 52.381 | 0.00 | 0.00 | 46.87 | 3.16 |
3382 | 6762 | 1.204146 | TCCTGATGTAGGCCCTGTTC | 58.796 | 55.000 | 0.00 | 0.00 | 46.87 | 3.18 |
3383 | 6763 | 0.179073 | CCTGATGTAGGCCCTGTTCG | 60.179 | 60.000 | 0.00 | 0.00 | 40.38 | 3.95 |
3384 | 6764 | 0.179073 | CTGATGTAGGCCCTGTTCGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3385 | 6765 | 0.907704 | TGATGTAGGCCCTGTTCGGT | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3386 | 6766 | 1.117150 | GATGTAGGCCCTGTTCGGTA | 58.883 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3387 | 6767 | 1.483415 | GATGTAGGCCCTGTTCGGTAA | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
3388 | 6768 | 1.575419 | TGTAGGCCCTGTTCGGTAAT | 58.425 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3389 | 6769 | 1.483415 | TGTAGGCCCTGTTCGGTAATC | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
3390 | 6770 | 1.483415 | GTAGGCCCTGTTCGGTAATCA | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
3391 | 6771 | 1.213296 | AGGCCCTGTTCGGTAATCAT | 58.787 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
3392 | 6772 | 1.141053 | AGGCCCTGTTCGGTAATCATC | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
3393 | 6773 | 1.594331 | GCCCTGTTCGGTAATCATCC | 58.406 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3395 | 6775 | 1.217882 | CCTGTTCGGTAATCATCCGC | 58.782 | 55.000 | 0.00 | 0.00 | 46.49 | 5.54 |
3396 | 6776 | 1.202533 | CCTGTTCGGTAATCATCCGCT | 60.203 | 52.381 | 0.00 | 0.00 | 46.49 | 5.52 |
3397 | 6777 | 2.128035 | CTGTTCGGTAATCATCCGCTC | 58.872 | 52.381 | 0.00 | 0.00 | 46.49 | 5.03 |
3398 | 6778 | 1.202486 | TGTTCGGTAATCATCCGCTCC | 60.202 | 52.381 | 0.00 | 0.00 | 46.49 | 4.70 |
3399 | 6779 | 1.068741 | GTTCGGTAATCATCCGCTCCT | 59.931 | 52.381 | 0.00 | 0.00 | 46.49 | 3.69 |
3400 | 6780 | 0.673985 | TCGGTAATCATCCGCTCCTG | 59.326 | 55.000 | 0.00 | 0.00 | 46.49 | 3.86 |
3401 | 6781 | 0.319900 | CGGTAATCATCCGCTCCTGG | 60.320 | 60.000 | 0.00 | 0.00 | 41.48 | 4.45 |
3402 | 6782 | 1.048601 | GGTAATCATCCGCTCCTGGA | 58.951 | 55.000 | 0.00 | 0.00 | 43.58 | 3.86 |
3403 | 6783 | 1.416401 | GGTAATCATCCGCTCCTGGAA | 59.584 | 52.381 | 0.00 | 0.00 | 42.46 | 3.53 |
3404 | 6784 | 2.039084 | GGTAATCATCCGCTCCTGGAAT | 59.961 | 50.000 | 0.00 | 0.00 | 42.46 | 3.01 |
3405 | 6785 | 2.557920 | AATCATCCGCTCCTGGAATC | 57.442 | 50.000 | 0.00 | 0.00 | 42.46 | 2.52 |
3406 | 6786 | 1.727062 | ATCATCCGCTCCTGGAATCT | 58.273 | 50.000 | 0.00 | 0.00 | 42.46 | 2.40 |
3407 | 6787 | 0.755079 | TCATCCGCTCCTGGAATCTG | 59.245 | 55.000 | 0.00 | 0.00 | 42.46 | 2.90 |
3408 | 6788 | 0.883814 | CATCCGCTCCTGGAATCTGC | 60.884 | 60.000 | 0.00 | 0.00 | 42.46 | 4.26 |
3409 | 6789 | 1.340399 | ATCCGCTCCTGGAATCTGCA | 61.340 | 55.000 | 0.00 | 0.00 | 42.46 | 4.41 |
3410 | 6790 | 1.523258 | CCGCTCCTGGAATCTGCAG | 60.523 | 63.158 | 7.63 | 7.63 | 35.43 | 4.41 |
3411 | 6791 | 1.519246 | CGCTCCTGGAATCTGCAGA | 59.481 | 57.895 | 20.79 | 20.79 | 38.14 | 4.26 |
3412 | 6792 | 0.530211 | CGCTCCTGGAATCTGCAGAG | 60.530 | 60.000 | 22.96 | 7.76 | 38.14 | 3.35 |
3413 | 6793 | 0.814812 | GCTCCTGGAATCTGCAGAGC | 60.815 | 60.000 | 22.96 | 15.89 | 38.14 | 4.09 |
3414 | 6794 | 0.540454 | CTCCTGGAATCTGCAGAGCA | 59.460 | 55.000 | 22.96 | 0.00 | 38.14 | 4.26 |
3431 | 6811 | 3.461843 | CAGAAAACTGCAACTCCGC | 57.538 | 52.632 | 0.00 | 0.00 | 0.00 | 5.54 |
3432 | 6812 | 0.040067 | CAGAAAACTGCAACTCCGCC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3433 | 6813 | 0.465460 | AGAAAACTGCAACTCCGCCA | 60.465 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
3434 | 6814 | 0.598065 | GAAAACTGCAACTCCGCCAT | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3435 | 6815 | 1.000274 | GAAAACTGCAACTCCGCCATT | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3436 | 6816 | 0.598065 | AAACTGCAACTCCGCCATTC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3437 | 6817 | 0.250901 | AACTGCAACTCCGCCATTCT | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3438 | 6818 | 0.957395 | ACTGCAACTCCGCCATTCTG | 60.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3439 | 6819 | 0.674581 | CTGCAACTCCGCCATTCTGA | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3440 | 6820 | 0.250684 | TGCAACTCCGCCATTCTGAA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3441 | 6821 | 0.169009 | GCAACTCCGCCATTCTGAAC | 59.831 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3442 | 6822 | 1.813513 | CAACTCCGCCATTCTGAACT | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3443 | 6823 | 1.466167 | CAACTCCGCCATTCTGAACTG | 59.534 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
3444 | 6824 | 0.687354 | ACTCCGCCATTCTGAACTGT | 59.313 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3445 | 6825 | 1.899814 | ACTCCGCCATTCTGAACTGTA | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
3446 | 6826 | 2.093973 | ACTCCGCCATTCTGAACTGTAG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3447 | 6827 | 1.009829 | CCGCCATTCTGAACTGTAGC | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3448 | 6828 | 1.406069 | CCGCCATTCTGAACTGTAGCT | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
3449 | 6829 | 1.929836 | CGCCATTCTGAACTGTAGCTC | 59.070 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
3450 | 6830 | 2.284190 | GCCATTCTGAACTGTAGCTCC | 58.716 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
3451 | 6831 | 2.911484 | CCATTCTGAACTGTAGCTCCC | 58.089 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3452 | 6832 | 2.420687 | CCATTCTGAACTGTAGCTCCCC | 60.421 | 54.545 | 0.00 | 0.00 | 0.00 | 4.81 |
3453 | 6833 | 1.276622 | TTCTGAACTGTAGCTCCCCC | 58.723 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3454 | 6834 | 0.116342 | TCTGAACTGTAGCTCCCCCA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3455 | 6835 | 0.984230 | CTGAACTGTAGCTCCCCCAA | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3456 | 6836 | 0.690762 | TGAACTGTAGCTCCCCCAAC | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3457 | 6837 | 0.984995 | GAACTGTAGCTCCCCCAACT | 59.015 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3458 | 6838 | 0.984995 | AACTGTAGCTCCCCCAACTC | 59.015 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3459 | 6839 | 0.910088 | ACTGTAGCTCCCCCAACTCC | 60.910 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3460 | 6840 | 1.961180 | CTGTAGCTCCCCCAACTCCG | 61.961 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3461 | 6841 | 3.081409 | TAGCTCCCCCAACTCCGC | 61.081 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
3462 | 6842 | 3.618855 | TAGCTCCCCCAACTCCGCT | 62.619 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
3463 | 6843 | 4.785453 | GCTCCCCCAACTCCGCTG | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
3464 | 6844 | 4.785453 | CTCCCCCAACTCCGCTGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 5.25 |
3477 | 6857 | 4.344865 | GCTGCCGGAGTTGGGGAA | 62.345 | 66.667 | 5.05 | 0.00 | 0.00 | 3.97 |
3478 | 6858 | 2.359975 | CTGCCGGAGTTGGGGAAC | 60.360 | 66.667 | 5.05 | 0.00 | 0.00 | 3.62 |
3479 | 6859 | 4.323477 | TGCCGGAGTTGGGGAACG | 62.323 | 66.667 | 5.05 | 0.00 | 0.00 | 3.95 |
3482 | 6862 | 2.264794 | CGGAGTTGGGGAACGGAG | 59.735 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3483 | 6863 | 2.046217 | GGAGTTGGGGAACGGAGC | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
3484 | 6864 | 2.434359 | GAGTTGGGGAACGGAGCG | 60.434 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
3485 | 6865 | 2.920912 | AGTTGGGGAACGGAGCGA | 60.921 | 61.111 | 0.00 | 0.00 | 0.00 | 4.93 |
3486 | 6866 | 2.240162 | GAGTTGGGGAACGGAGCGAT | 62.240 | 60.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3487 | 6867 | 0.974010 | AGTTGGGGAACGGAGCGATA | 60.974 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3488 | 6868 | 0.808847 | GTTGGGGAACGGAGCGATAC | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3489 | 6869 | 1.963464 | TTGGGGAACGGAGCGATACC | 61.963 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3496 | 6876 | 4.014065 | GGAGCGATACCGAACAGC | 57.986 | 61.111 | 0.00 | 0.00 | 38.22 | 4.40 |
3497 | 6877 | 1.141019 | GGAGCGATACCGAACAGCA | 59.859 | 57.895 | 0.00 | 0.00 | 38.22 | 4.41 |
3498 | 6878 | 1.146358 | GGAGCGATACCGAACAGCAC | 61.146 | 60.000 | 0.00 | 0.00 | 38.22 | 4.40 |
3499 | 6879 | 0.457853 | GAGCGATACCGAACAGCACA | 60.458 | 55.000 | 0.00 | 0.00 | 38.22 | 4.57 |
3514 | 6894 | 6.972901 | CGAACAGCACAGTAATATCAACTCTA | 59.027 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
3515 | 6895 | 7.166638 | CGAACAGCACAGTAATATCAACTCTAG | 59.833 | 40.741 | 0.00 | 0.00 | 0.00 | 2.43 |
3516 | 6896 | 6.276847 | ACAGCACAGTAATATCAACTCTAGC | 58.723 | 40.000 | 0.00 | 0.00 | 0.00 | 3.42 |
3517 | 6897 | 6.127338 | ACAGCACAGTAATATCAACTCTAGCA | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
3518 | 6898 | 6.420306 | CAGCACAGTAATATCAACTCTAGCAG | 59.580 | 42.308 | 0.00 | 0.00 | 0.00 | 4.24 |
3536 | 7310 | 8.621532 | TCTAGCAGAAACACATAAAACTTCAT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3553 | 7327 | 6.259550 | ACTTCATCTACAGATTTTGGTTGC | 57.740 | 37.500 | 0.00 | 0.00 | 31.21 | 4.17 |
3565 | 7339 | 4.320608 | TTTTGGTTGCTCCATTCAGAAC | 57.679 | 40.909 | 2.36 | 0.00 | 46.60 | 3.01 |
3566 | 7340 | 1.909700 | TGGTTGCTCCATTCAGAACC | 58.090 | 50.000 | 0.00 | 0.00 | 41.93 | 3.62 |
3568 | 7342 | 1.541588 | GGTTGCTCCATTCAGAACCAC | 59.458 | 52.381 | 0.00 | 0.00 | 36.79 | 4.16 |
3622 | 7397 | 1.896220 | CCAGTTTAAGGCAGCTGTGA | 58.104 | 50.000 | 16.64 | 0.00 | 0.00 | 3.58 |
3623 | 7398 | 2.440409 | CCAGTTTAAGGCAGCTGTGAT | 58.560 | 47.619 | 16.64 | 4.04 | 0.00 | 3.06 |
3626 | 7401 | 4.458989 | CCAGTTTAAGGCAGCTGTGATAAA | 59.541 | 41.667 | 16.64 | 14.19 | 0.00 | 1.40 |
3634 | 7409 | 2.159393 | GCAGCTGTGATAAATGCGGAAA | 60.159 | 45.455 | 16.64 | 0.00 | 0.00 | 3.13 |
3637 | 7412 | 3.316308 | AGCTGTGATAAATGCGGAAATCC | 59.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3663 | 7440 | 3.706600 | AACGTTGCCCCTACAATTAGA | 57.293 | 42.857 | 0.00 | 0.00 | 0.00 | 2.10 |
3666 | 7443 | 3.754850 | ACGTTGCCCCTACAATTAGAAAC | 59.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
3667 | 7444 | 3.181514 | CGTTGCCCCTACAATTAGAAACG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 3.60 |
3668 | 7445 | 2.993937 | TGCCCCTACAATTAGAAACGG | 58.006 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
3669 | 7446 | 2.572556 | TGCCCCTACAATTAGAAACGGA | 59.427 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3670 | 7447 | 3.201266 | TGCCCCTACAATTAGAAACGGAT | 59.799 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
3671 | 7448 | 3.564225 | GCCCCTACAATTAGAAACGGATG | 59.436 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3672 | 7449 | 3.564225 | CCCCTACAATTAGAAACGGATGC | 59.436 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
3673 | 7450 | 4.451900 | CCCTACAATTAGAAACGGATGCT | 58.548 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
3676 | 7453 | 6.540914 | CCCTACAATTAGAAACGGATGCTTTA | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
3677 | 7454 | 7.254795 | CCCTACAATTAGAAACGGATGCTTTAG | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 1.85 |
3679 | 7456 | 7.865706 | ACAATTAGAAACGGATGCTTTAGAT | 57.134 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3695 | 7633 | 9.844257 | ATGCTTTAGATTAATGTTAGAAGCTCT | 57.156 | 29.630 | 19.31 | 10.55 | 39.08 | 4.09 |
3700 | 7638 | 9.587772 | TTAGATTAATGTTAGAAGCTCTCACAC | 57.412 | 33.333 | 0.00 | 0.00 | 33.93 | 3.82 |
3715 | 7653 | 2.990479 | CACCAGGTGGGGTCTAGC | 59.010 | 66.667 | 12.40 | 0.00 | 39.79 | 3.42 |
3719 | 7657 | 1.550130 | CCAGGTGGGGTCTAGCGAAA | 61.550 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3723 | 7661 | 1.202545 | GGTGGGGTCTAGCGAAAGATC | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
3749 | 7687 | 3.433306 | AGGCAAGCCTTACACAATGTA | 57.567 | 42.857 | 8.02 | 0.00 | 45.70 | 2.29 |
3760 | 7698 | 2.699954 | ACACAATGTAAGAAGCTCCGG | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 5.14 |
3761 | 7699 | 2.009774 | CACAATGTAAGAAGCTCCGGG | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
3763 | 7701 | 2.304761 | ACAATGTAAGAAGCTCCGGGAA | 59.695 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
3764 | 7702 | 3.244770 | ACAATGTAAGAAGCTCCGGGAAA | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
3765 | 7703 | 2.762535 | TGTAAGAAGCTCCGGGAAAG | 57.237 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3767 | 7705 | 1.553704 | GTAAGAAGCTCCGGGAAAGGA | 59.446 | 52.381 | 0.00 | 0.00 | 38.80 | 3.36 |
3769 | 7707 | 1.290134 | AGAAGCTCCGGGAAAGGATT | 58.710 | 50.000 | 0.00 | 0.00 | 39.96 | 3.01 |
3770 | 7708 | 2.478292 | AGAAGCTCCGGGAAAGGATTA | 58.522 | 47.619 | 0.00 | 0.00 | 39.96 | 1.75 |
3774 | 7733 | 2.299297 | AGCTCCGGGAAAGGATTATACG | 59.701 | 50.000 | 0.00 | 0.00 | 39.96 | 3.06 |
3798 | 7757 | 0.323725 | AGCCTTACCCCAGTGCAATG | 60.324 | 55.000 | 7.29 | 7.29 | 0.00 | 2.82 |
3799 | 7758 | 0.611896 | GCCTTACCCCAGTGCAATGT | 60.612 | 55.000 | 13.82 | 0.00 | 0.00 | 2.71 |
3800 | 7759 | 1.923356 | CCTTACCCCAGTGCAATGTT | 58.077 | 50.000 | 13.82 | 0.00 | 0.00 | 2.71 |
3801 | 7760 | 2.882229 | GCCTTACCCCAGTGCAATGTTA | 60.882 | 50.000 | 13.82 | 0.00 | 0.00 | 2.41 |
3802 | 7761 | 3.016736 | CCTTACCCCAGTGCAATGTTAG | 58.983 | 50.000 | 13.82 | 3.66 | 0.00 | 2.34 |
3839 | 7810 | 1.939838 | GCACAAGTGGGGAGTACTTCG | 60.940 | 57.143 | 0.00 | 0.00 | 36.29 | 3.79 |
3840 | 7811 | 1.343465 | CACAAGTGGGGAGTACTTCGT | 59.657 | 52.381 | 0.00 | 0.00 | 36.29 | 3.85 |
3842 | 7813 | 0.886563 | AAGTGGGGAGTACTTCGTCG | 59.113 | 55.000 | 0.00 | 0.00 | 33.28 | 5.12 |
3859 | 7830 | 4.552365 | GCTGCGCCAGGCCTATCA | 62.552 | 66.667 | 3.98 | 0.00 | 42.61 | 2.15 |
3882 | 7853 | 3.000041 | TCAAACGCTCACATCCATACAC | 59.000 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3889 | 7860 | 3.553511 | GCTCACATCCATACACGAGAAAG | 59.446 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
3931 | 7904 | 3.668447 | TCAGCTCTGGTCAGAACAATTC | 58.332 | 45.455 | 2.13 | 0.00 | 36.94 | 2.17 |
4025 | 7998 | 2.571212 | ACACCACACATTGTTCACGAT | 58.429 | 42.857 | 0.00 | 0.00 | 0.00 | 3.73 |
4035 | 8008 | 4.761739 | ACATTGTTCACGATCAATCAAGGT | 59.238 | 37.500 | 0.00 | 0.00 | 32.85 | 3.50 |
4106 | 8079 | 8.433421 | AACTTTAGGTACACATTATTCATCCG | 57.567 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 4.399219 | TGACGAGAAGAAAAGAGAGAGGA | 58.601 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
44 | 45 | 1.851021 | TTGATTCGCCGGTGCAGTTG | 61.851 | 55.000 | 11.05 | 0.00 | 37.32 | 3.16 |
99 | 104 | 4.158579 | GCTTGGTAAGAAAAGGAAGGATGG | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
224 | 251 | 2.409651 | CGGTAGAGGCGAGCTCAC | 59.590 | 66.667 | 15.40 | 3.30 | 0.00 | 3.51 |
536 | 563 | 1.113517 | ACATATAGTGGTCGCCGCCT | 61.114 | 55.000 | 5.92 | 0.84 | 33.99 | 5.52 |
636 | 663 | 1.191489 | TGTCCCTTCGGTCAGCATCA | 61.191 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
642 | 669 | 2.203523 | TCGGTGTCCCTTCGGTCA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
645 | 672 | 2.261671 | CACTCGGTGTCCCTTCGG | 59.738 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
677 | 704 | 1.377987 | GCAACCCTGTGCCCGATTA | 60.378 | 57.895 | 0.00 | 0.00 | 38.66 | 1.75 |
689 | 716 | 6.811253 | TTCGATATATGTATTTGGCAACCC | 57.189 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
732 | 759 | 9.228949 | CCGTAATAGAGTAGGATACATTGTACT | 57.771 | 37.037 | 0.00 | 0.00 | 46.26 | 2.73 |
733 | 760 | 9.224267 | TCCGTAATAGAGTAGGATACATTGTAC | 57.776 | 37.037 | 0.00 | 0.00 | 46.26 | 2.90 |
734 | 761 | 9.445878 | CTCCGTAATAGAGTAGGATACATTGTA | 57.554 | 37.037 | 0.00 | 0.00 | 46.26 | 2.41 |
735 | 762 | 7.943447 | ACTCCGTAATAGAGTAGGATACATTGT | 59.057 | 37.037 | 0.00 | 0.00 | 46.26 | 2.71 |
736 | 763 | 8.338072 | ACTCCGTAATAGAGTAGGATACATTG | 57.662 | 38.462 | 0.00 | 0.00 | 46.26 | 2.82 |
747 | 774 | 9.881649 | TCGTAATCATATACTCCGTAATAGAGT | 57.118 | 33.333 | 0.00 | 0.00 | 46.22 | 3.24 |
755 | 782 | 9.706691 | ATTTTCATTCGTAATCATATACTCCGT | 57.293 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
762 | 789 | 9.864034 | GACGTGAATTTTCATTCGTAATCATAT | 57.136 | 29.630 | 0.00 | 0.00 | 41.77 | 1.78 |
763 | 790 | 8.874816 | TGACGTGAATTTTCATTCGTAATCATA | 58.125 | 29.630 | 0.00 | 0.00 | 41.77 | 2.15 |
764 | 791 | 7.747888 | TGACGTGAATTTTCATTCGTAATCAT | 58.252 | 30.769 | 0.00 | 0.00 | 41.77 | 2.45 |
765 | 792 | 7.123160 | TGACGTGAATTTTCATTCGTAATCA | 57.877 | 32.000 | 0.00 | 2.32 | 41.77 | 2.57 |
766 | 793 | 8.429739 | TTTGACGTGAATTTTCATTCGTAATC | 57.570 | 30.769 | 0.00 | 0.29 | 41.77 | 1.75 |
767 | 794 | 8.789881 | TTTTGACGTGAATTTTCATTCGTAAT | 57.210 | 26.923 | 0.00 | 0.00 | 41.77 | 1.89 |
768 | 795 | 8.525071 | GTTTTTGACGTGAATTTTCATTCGTAA | 58.475 | 29.630 | 0.00 | 0.70 | 41.77 | 3.18 |
769 | 796 | 7.097369 | CGTTTTTGACGTGAATTTTCATTCGTA | 60.097 | 33.333 | 0.00 | 0.00 | 46.49 | 3.43 |
770 | 797 | 6.290851 | CGTTTTTGACGTGAATTTTCATTCGT | 60.291 | 34.615 | 8.21 | 8.21 | 46.49 | 3.85 |
771 | 798 | 6.049651 | CGTTTTTGACGTGAATTTTCATTCG | 58.950 | 36.000 | 0.00 | 0.00 | 46.49 | 3.34 |
789 | 816 | 1.782028 | GCACCCGTCTGCTCGTTTTT | 61.782 | 55.000 | 0.00 | 0.00 | 34.06 | 1.94 |
848 | 4149 | 0.321298 | ATGGCCGTTGCTTCGTAACT | 60.321 | 50.000 | 0.00 | 0.00 | 37.74 | 2.24 |
1218 | 4522 | 2.764128 | GGGGACGAGGAGGATGCA | 60.764 | 66.667 | 0.00 | 0.00 | 0.00 | 3.96 |
1360 | 4667 | 0.108329 | GTCGACGTGATGGGGTCATT | 60.108 | 55.000 | 0.00 | 0.00 | 39.48 | 2.57 |
1361 | 4668 | 1.515954 | GTCGACGTGATGGGGTCAT | 59.484 | 57.895 | 0.00 | 0.00 | 39.48 | 3.06 |
1604 | 4913 | 3.971702 | GCCAGAAGCCCCCACAGT | 61.972 | 66.667 | 0.00 | 0.00 | 34.35 | 3.55 |
1631 | 4940 | 0.248012 | TTTCGTCGAGCATGGCCTTA | 59.752 | 50.000 | 3.32 | 0.00 | 0.00 | 2.69 |
1687 | 4996 | 2.821366 | GACTGCCGGCTGATGTGG | 60.821 | 66.667 | 36.36 | 15.54 | 0.00 | 4.17 |
1745 | 5058 | 0.737219 | GATGACATGGTGAAGGCAGC | 59.263 | 55.000 | 0.00 | 0.00 | 42.72 | 5.25 |
1747 | 5060 | 0.697658 | TGGATGACATGGTGAAGGCA | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1748 | 5061 | 1.098050 | GTGGATGACATGGTGAAGGC | 58.902 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1750 | 5063 | 2.026915 | TGGAGTGGATGACATGGTGAAG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1808 | 5137 | 2.612672 | CGTGATTGAGCTTGCTGATGAT | 59.387 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
1893 | 5227 | 0.744771 | GCCCTCCCATGTCGAACTTC | 60.745 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1940 | 5274 | 3.510719 | CCACGCTGGAATTAACCAAATG | 58.489 | 45.455 | 0.00 | 0.00 | 40.96 | 2.32 |
1941 | 5275 | 2.094234 | GCCACGCTGGAATTAACCAAAT | 60.094 | 45.455 | 8.04 | 0.00 | 40.96 | 2.32 |
1947 | 5281 | 1.277842 | TCTCTGCCACGCTGGAATTAA | 59.722 | 47.619 | 8.04 | 0.00 | 40.96 | 1.40 |
1955 | 5290 | 2.492090 | GACGATCTCTGCCACGCT | 59.508 | 61.111 | 0.00 | 0.00 | 0.00 | 5.07 |
1960 | 5295 | 0.171455 | ACAAGTCGACGATCTCTGCC | 59.829 | 55.000 | 10.46 | 0.00 | 0.00 | 4.85 |
1961 | 5296 | 1.135660 | TGACAAGTCGACGATCTCTGC | 60.136 | 52.381 | 10.46 | 0.00 | 0.00 | 4.26 |
1965 | 5311 | 0.811915 | CCCTGACAAGTCGACGATCT | 59.188 | 55.000 | 10.46 | 0.00 | 0.00 | 2.75 |
2146 | 5497 | 0.032540 | TCATCATCGGCGACATGAGG | 59.967 | 55.000 | 22.79 | 19.81 | 33.48 | 3.86 |
2253 | 5604 | 4.444876 | GGGAGCTGCTCTTATTCCATAACA | 60.445 | 45.833 | 27.09 | 0.00 | 0.00 | 2.41 |
2274 | 5626 | 4.838152 | CACCTGATCCACGGCGGG | 62.838 | 72.222 | 13.24 | 7.16 | 36.60 | 6.13 |
2689 | 6045 | 6.096282 | CCTCCTCGTATTCTTCTTCTTCTTCT | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
2740 | 6099 | 4.057428 | GTGTCGTGCTCGGCCTCT | 62.057 | 66.667 | 10.59 | 0.00 | 41.33 | 3.69 |
2876 | 6238 | 0.247736 | GTGCGATGTGAGGGAGACTT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2887 | 6249 | 1.670730 | TGCATTGTCGGTGCGATGT | 60.671 | 52.632 | 0.00 | 0.00 | 45.37 | 3.06 |
2889 | 6251 | 2.398554 | GGTGCATTGTCGGTGCGAT | 61.399 | 57.895 | 0.00 | 0.00 | 45.37 | 4.58 |
2929 | 6291 | 3.989698 | ATTGTCGGTGCGGCGAGAG | 62.990 | 63.158 | 12.98 | 0.00 | 32.50 | 3.20 |
2930 | 6292 | 4.063967 | ATTGTCGGTGCGGCGAGA | 62.064 | 61.111 | 12.98 | 0.08 | 32.50 | 4.04 |
2931 | 6293 | 3.853330 | CATTGTCGGTGCGGCGAG | 61.853 | 66.667 | 12.98 | 0.00 | 32.50 | 5.03 |
2932 | 6294 | 4.673298 | ACATTGTCGGTGCGGCGA | 62.673 | 61.111 | 12.98 | 0.00 | 32.50 | 5.54 |
2933 | 6295 | 4.444024 | CACATTGTCGGTGCGGCG | 62.444 | 66.667 | 0.51 | 0.51 | 32.50 | 6.46 |
2938 | 6300 | 1.196808 | GTAACTGGCACATTGTCGGTG | 59.803 | 52.381 | 0.00 | 0.00 | 41.37 | 4.94 |
2939 | 6301 | 1.071699 | AGTAACTGGCACATTGTCGGT | 59.928 | 47.619 | 0.00 | 0.00 | 44.65 | 4.69 |
2940 | 6302 | 1.464608 | CAGTAACTGGCACATTGTCGG | 59.535 | 52.381 | 0.00 | 0.00 | 38.20 | 4.79 |
2941 | 6303 | 2.143122 | ACAGTAACTGGCACATTGTCG | 58.857 | 47.619 | 0.00 | 0.00 | 38.20 | 4.35 |
2942 | 6304 | 2.484264 | GGACAGTAACTGGCACATTGTC | 59.516 | 50.000 | 0.00 | 6.25 | 42.18 | 3.18 |
2943 | 6305 | 2.504367 | GGACAGTAACTGGCACATTGT | 58.496 | 47.619 | 0.00 | 0.00 | 42.18 | 2.71 |
2944 | 6306 | 1.812571 | GGGACAGTAACTGGCACATTG | 59.187 | 52.381 | 0.00 | 0.00 | 43.56 | 2.82 |
2945 | 6307 | 2.200373 | GGGACAGTAACTGGCACATT | 57.800 | 50.000 | 0.00 | 0.00 | 43.56 | 2.71 |
2946 | 6308 | 3.957288 | GGGACAGTAACTGGCACAT | 57.043 | 52.632 | 0.00 | 0.00 | 43.56 | 3.21 |
2948 | 6310 | 0.107831 | TGTGGGACAGTAACTGGCAC | 59.892 | 55.000 | 0.00 | 0.00 | 44.54 | 5.01 |
2949 | 6311 | 0.396435 | CTGTGGGACAGTAACTGGCA | 59.604 | 55.000 | 0.00 | 0.00 | 42.18 | 4.92 |
2950 | 6312 | 3.233355 | CTGTGGGACAGTAACTGGC | 57.767 | 57.895 | 0.00 | 0.00 | 41.80 | 4.85 |
2959 | 6321 | 3.311110 | GAGGGCGACTGTGGGACA | 61.311 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2960 | 6322 | 2.997897 | AGAGGGCGACTGTGGGAC | 60.998 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
2961 | 6323 | 2.680352 | GAGAGGGCGACTGTGGGA | 60.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
2962 | 6324 | 4.135153 | CGAGAGGGCGACTGTGGG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
2984 | 6346 | 1.795170 | GCAACCGGCACATTGTCAGT | 61.795 | 55.000 | 0.00 | 0.00 | 43.97 | 3.41 |
2986 | 6348 | 3.038280 | GCAACCGGCACATTGTCA | 58.962 | 55.556 | 0.00 | 0.00 | 43.97 | 3.58 |
3057 | 6434 | 2.434884 | CAACTCCGATGGCAGCGT | 60.435 | 61.111 | 24.41 | 2.11 | 0.00 | 5.07 |
3226 | 6606 | 0.038983 | TGCGTGCGTGTACATACAGT | 60.039 | 50.000 | 0.00 | 0.00 | 36.78 | 3.55 |
3227 | 6607 | 1.006079 | CATGCGTGCGTGTACATACAG | 60.006 | 52.381 | 0.00 | 0.00 | 36.78 | 2.74 |
3228 | 6608 | 0.995728 | CATGCGTGCGTGTACATACA | 59.004 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3229 | 6609 | 0.996462 | ACATGCGTGCGTGTACATAC | 59.004 | 50.000 | 17.53 | 0.00 | 43.52 | 2.39 |
3230 | 6610 | 2.097791 | TCTACATGCGTGCGTGTACATA | 59.902 | 45.455 | 19.96 | 8.40 | 43.52 | 2.29 |
3322 | 6702 | 9.740710 | ATCCATGGATATGATGCTCATATTATG | 57.259 | 33.333 | 26.25 | 20.17 | 46.75 | 1.90 |
3323 | 6703 | 9.961264 | GATCCATGGATATGATGCTCATATTAT | 57.039 | 33.333 | 27.38 | 0.00 | 46.75 | 1.28 |
3343 | 6723 | 6.385176 | TCAGGAACTAAGAATCACAGATCCAT | 59.615 | 38.462 | 11.14 | 0.00 | 36.02 | 3.41 |
3347 | 6727 | 7.192852 | ACATCAGGAACTAAGAATCACAGAT | 57.807 | 36.000 | 0.00 | 0.00 | 36.02 | 2.90 |
3367 | 6747 | 1.117150 | TACCGAACAGGGCCTACATC | 58.883 | 55.000 | 5.28 | 3.85 | 46.96 | 3.06 |
3370 | 6750 | 1.483415 | TGATTACCGAACAGGGCCTAC | 59.517 | 52.381 | 5.28 | 0.00 | 46.96 | 3.18 |
3371 | 6751 | 1.868713 | TGATTACCGAACAGGGCCTA | 58.131 | 50.000 | 5.28 | 0.00 | 46.96 | 3.93 |
3372 | 6752 | 1.141053 | GATGATTACCGAACAGGGCCT | 59.859 | 52.381 | 0.00 | 0.00 | 46.96 | 5.19 |
3373 | 6753 | 1.594331 | GATGATTACCGAACAGGGCC | 58.406 | 55.000 | 0.00 | 0.00 | 46.96 | 5.80 |
3374 | 6754 | 1.594331 | GGATGATTACCGAACAGGGC | 58.406 | 55.000 | 0.00 | 0.00 | 46.96 | 5.19 |
3383 | 6763 | 1.048601 | TCCAGGAGCGGATGATTACC | 58.951 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3384 | 6764 | 2.910688 | TTCCAGGAGCGGATGATTAC | 57.089 | 50.000 | 0.00 | 0.00 | 34.19 | 1.89 |
3385 | 6765 | 3.007290 | CAGATTCCAGGAGCGGATGATTA | 59.993 | 47.826 | 0.00 | 0.00 | 34.19 | 1.75 |
3386 | 6766 | 2.053244 | AGATTCCAGGAGCGGATGATT | 58.947 | 47.619 | 0.00 | 0.00 | 34.19 | 2.57 |
3387 | 6767 | 1.347050 | CAGATTCCAGGAGCGGATGAT | 59.653 | 52.381 | 0.00 | 0.00 | 34.19 | 2.45 |
3388 | 6768 | 0.755079 | CAGATTCCAGGAGCGGATGA | 59.245 | 55.000 | 0.00 | 0.00 | 34.19 | 2.92 |
3389 | 6769 | 0.883814 | GCAGATTCCAGGAGCGGATG | 60.884 | 60.000 | 0.00 | 0.00 | 34.19 | 3.51 |
3390 | 6770 | 1.340399 | TGCAGATTCCAGGAGCGGAT | 61.340 | 55.000 | 0.00 | 0.00 | 34.19 | 4.18 |
3391 | 6771 | 1.964608 | CTGCAGATTCCAGGAGCGGA | 61.965 | 60.000 | 8.42 | 0.00 | 33.54 | 5.54 |
3392 | 6772 | 1.523258 | CTGCAGATTCCAGGAGCGG | 60.523 | 63.158 | 8.42 | 0.00 | 0.00 | 5.52 |
3393 | 6773 | 0.530211 | CTCTGCAGATTCCAGGAGCG | 60.530 | 60.000 | 18.63 | 0.00 | 0.00 | 5.03 |
3394 | 6774 | 0.814812 | GCTCTGCAGATTCCAGGAGC | 60.815 | 60.000 | 18.63 | 10.76 | 0.00 | 4.70 |
3395 | 6775 | 0.540454 | TGCTCTGCAGATTCCAGGAG | 59.460 | 55.000 | 18.63 | 3.76 | 33.32 | 3.69 |
3396 | 6776 | 2.687781 | TGCTCTGCAGATTCCAGGA | 58.312 | 52.632 | 18.63 | 3.09 | 33.32 | 3.86 |
3414 | 6794 | 0.465460 | TGGCGGAGTTGCAGTTTTCT | 60.465 | 50.000 | 0.00 | 0.00 | 36.28 | 2.52 |
3415 | 6795 | 0.598065 | ATGGCGGAGTTGCAGTTTTC | 59.402 | 50.000 | 0.00 | 0.00 | 36.28 | 2.29 |
3416 | 6796 | 1.000274 | GAATGGCGGAGTTGCAGTTTT | 60.000 | 47.619 | 0.00 | 0.00 | 36.28 | 2.43 |
3417 | 6797 | 0.598065 | GAATGGCGGAGTTGCAGTTT | 59.402 | 50.000 | 0.00 | 0.00 | 36.28 | 2.66 |
3418 | 6798 | 0.250901 | AGAATGGCGGAGTTGCAGTT | 60.251 | 50.000 | 0.00 | 0.00 | 36.28 | 3.16 |
3419 | 6799 | 0.957395 | CAGAATGGCGGAGTTGCAGT | 60.957 | 55.000 | 0.00 | 0.00 | 36.28 | 4.40 |
3420 | 6800 | 0.674581 | TCAGAATGGCGGAGTTGCAG | 60.675 | 55.000 | 0.00 | 0.00 | 36.16 | 4.41 |
3421 | 6801 | 0.250684 | TTCAGAATGGCGGAGTTGCA | 60.251 | 50.000 | 0.00 | 0.00 | 36.16 | 4.08 |
3422 | 6802 | 0.169009 | GTTCAGAATGGCGGAGTTGC | 59.831 | 55.000 | 0.00 | 0.00 | 36.16 | 4.17 |
3423 | 6803 | 1.466167 | CAGTTCAGAATGGCGGAGTTG | 59.534 | 52.381 | 0.00 | 0.00 | 36.16 | 3.16 |
3424 | 6804 | 1.072331 | ACAGTTCAGAATGGCGGAGTT | 59.928 | 47.619 | 0.00 | 0.00 | 36.16 | 3.01 |
3425 | 6805 | 0.687354 | ACAGTTCAGAATGGCGGAGT | 59.313 | 50.000 | 0.00 | 0.00 | 36.16 | 3.85 |
3426 | 6806 | 2.544685 | CTACAGTTCAGAATGGCGGAG | 58.455 | 52.381 | 0.00 | 0.00 | 36.16 | 4.63 |
3427 | 6807 | 1.405526 | GCTACAGTTCAGAATGGCGGA | 60.406 | 52.381 | 0.00 | 0.00 | 36.16 | 5.54 |
3428 | 6808 | 1.009829 | GCTACAGTTCAGAATGGCGG | 58.990 | 55.000 | 0.00 | 0.00 | 36.16 | 6.13 |
3429 | 6809 | 1.929836 | GAGCTACAGTTCAGAATGGCG | 59.070 | 52.381 | 0.00 | 0.00 | 36.16 | 5.69 |
3430 | 6810 | 2.284190 | GGAGCTACAGTTCAGAATGGC | 58.716 | 52.381 | 0.00 | 0.00 | 36.16 | 4.40 |
3431 | 6811 | 2.420687 | GGGGAGCTACAGTTCAGAATGG | 60.421 | 54.545 | 0.00 | 0.00 | 36.16 | 3.16 |
3432 | 6812 | 2.420687 | GGGGGAGCTACAGTTCAGAATG | 60.421 | 54.545 | 0.00 | 0.00 | 37.54 | 2.67 |
3433 | 6813 | 1.840635 | GGGGGAGCTACAGTTCAGAAT | 59.159 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
3434 | 6814 | 1.276622 | GGGGGAGCTACAGTTCAGAA | 58.723 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3435 | 6815 | 0.116342 | TGGGGGAGCTACAGTTCAGA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3436 | 6816 | 0.984230 | TTGGGGGAGCTACAGTTCAG | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3437 | 6817 | 0.690762 | GTTGGGGGAGCTACAGTTCA | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3438 | 6818 | 0.984995 | AGTTGGGGGAGCTACAGTTC | 59.015 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3439 | 6819 | 0.984995 | GAGTTGGGGGAGCTACAGTT | 59.015 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3440 | 6820 | 0.910088 | GGAGTTGGGGGAGCTACAGT | 60.910 | 60.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3441 | 6821 | 1.908483 | GGAGTTGGGGGAGCTACAG | 59.092 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
3442 | 6822 | 1.987855 | CGGAGTTGGGGGAGCTACA | 60.988 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
3443 | 6823 | 2.901042 | CGGAGTTGGGGGAGCTAC | 59.099 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
3444 | 6824 | 3.081409 | GCGGAGTTGGGGGAGCTA | 61.081 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
3446 | 6826 | 4.785453 | CAGCGGAGTTGGGGGAGC | 62.785 | 72.222 | 0.00 | 0.00 | 34.22 | 4.70 |
3447 | 6827 | 4.785453 | GCAGCGGAGTTGGGGGAG | 62.785 | 72.222 | 0.00 | 0.00 | 39.81 | 4.30 |
3460 | 6840 | 4.344865 | TTCCCCAACTCCGGCAGC | 62.345 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
3461 | 6841 | 2.359975 | GTTCCCCAACTCCGGCAG | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
3462 | 6842 | 4.323477 | CGTTCCCCAACTCCGGCA | 62.323 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
3464 | 6844 | 3.310860 | CTCCGTTCCCCAACTCCGG | 62.311 | 68.421 | 0.00 | 0.00 | 39.98 | 5.14 |
3465 | 6845 | 2.264794 | CTCCGTTCCCCAACTCCG | 59.735 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3466 | 6846 | 2.046217 | GCTCCGTTCCCCAACTCC | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3467 | 6847 | 2.240162 | ATCGCTCCGTTCCCCAACTC | 62.240 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3468 | 6848 | 0.974010 | TATCGCTCCGTTCCCCAACT | 60.974 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3469 | 6849 | 0.808847 | GTATCGCTCCGTTCCCCAAC | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3470 | 6850 | 1.518774 | GTATCGCTCCGTTCCCCAA | 59.481 | 57.895 | 0.00 | 0.00 | 0.00 | 4.12 |
3471 | 6851 | 2.428925 | GGTATCGCTCCGTTCCCCA | 61.429 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
3472 | 6852 | 2.420466 | GGTATCGCTCCGTTCCCC | 59.580 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
3473 | 6853 | 2.008268 | TTCGGTATCGCTCCGTTCCC | 62.008 | 60.000 | 11.16 | 0.00 | 46.86 | 3.97 |
3474 | 6854 | 0.869028 | GTTCGGTATCGCTCCGTTCC | 60.869 | 60.000 | 11.16 | 0.00 | 46.86 | 3.62 |
3475 | 6855 | 0.179156 | TGTTCGGTATCGCTCCGTTC | 60.179 | 55.000 | 11.16 | 7.41 | 46.86 | 3.95 |
3476 | 6856 | 0.179145 | CTGTTCGGTATCGCTCCGTT | 60.179 | 55.000 | 11.16 | 0.00 | 46.86 | 4.44 |
3477 | 6857 | 1.432251 | CTGTTCGGTATCGCTCCGT | 59.568 | 57.895 | 11.16 | 0.00 | 46.86 | 4.69 |
3479 | 6859 | 1.141019 | TGCTGTTCGGTATCGCTCC | 59.859 | 57.895 | 0.00 | 0.00 | 36.13 | 4.70 |
3480 | 6860 | 0.457853 | TGTGCTGTTCGGTATCGCTC | 60.458 | 55.000 | 0.00 | 0.00 | 36.13 | 5.03 |
3481 | 6861 | 0.458543 | CTGTGCTGTTCGGTATCGCT | 60.459 | 55.000 | 0.00 | 0.00 | 36.13 | 4.93 |
3482 | 6862 | 0.736325 | ACTGTGCTGTTCGGTATCGC | 60.736 | 55.000 | 0.00 | 0.00 | 36.13 | 4.58 |
3483 | 6863 | 2.554806 | TACTGTGCTGTTCGGTATCG | 57.445 | 50.000 | 0.00 | 0.00 | 37.82 | 2.92 |
3484 | 6864 | 6.213677 | TGATATTACTGTGCTGTTCGGTATC | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3485 | 6865 | 6.156748 | TGATATTACTGTGCTGTTCGGTAT | 57.843 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
3486 | 6866 | 5.585820 | TGATATTACTGTGCTGTTCGGTA | 57.414 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3487 | 6867 | 4.465632 | TGATATTACTGTGCTGTTCGGT | 57.534 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
3488 | 6868 | 4.870426 | AGTTGATATTACTGTGCTGTTCGG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3489 | 6869 | 5.807520 | AGAGTTGATATTACTGTGCTGTTCG | 59.192 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3490 | 6870 | 7.043059 | GCTAGAGTTGATATTACTGTGCTGTTC | 60.043 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
3491 | 6871 | 6.758886 | GCTAGAGTTGATATTACTGTGCTGTT | 59.241 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3492 | 6872 | 6.127338 | TGCTAGAGTTGATATTACTGTGCTGT | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
3493 | 6873 | 6.276091 | TGCTAGAGTTGATATTACTGTGCTG | 58.724 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3494 | 6874 | 6.322456 | TCTGCTAGAGTTGATATTACTGTGCT | 59.678 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
3495 | 6875 | 6.507900 | TCTGCTAGAGTTGATATTACTGTGC | 58.492 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3496 | 6876 | 8.812329 | GTTTCTGCTAGAGTTGATATTACTGTG | 58.188 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
3497 | 6877 | 8.531982 | TGTTTCTGCTAGAGTTGATATTACTGT | 58.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3498 | 6878 | 8.812329 | GTGTTTCTGCTAGAGTTGATATTACTG | 58.188 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3499 | 6879 | 8.531982 | TGTGTTTCTGCTAGAGTTGATATTACT | 58.468 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
3514 | 6894 | 7.516198 | AGATGAAGTTTTATGTGTTTCTGCT | 57.484 | 32.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3515 | 6895 | 8.289618 | TGTAGATGAAGTTTTATGTGTTTCTGC | 58.710 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3516 | 6896 | 9.817365 | CTGTAGATGAAGTTTTATGTGTTTCTG | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3517 | 6897 | 9.778741 | TCTGTAGATGAAGTTTTATGTGTTTCT | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3536 | 7310 | 4.365514 | TGGAGCAACCAAAATCTGTAGA | 57.634 | 40.909 | 0.11 | 0.00 | 46.75 | 2.59 |
3553 | 7327 | 4.763793 | AGAATGTTGTGGTTCTGAATGGAG | 59.236 | 41.667 | 0.00 | 0.00 | 33.64 | 3.86 |
3565 | 7339 | 2.129607 | GCTTGTGCAAGAATGTTGTGG | 58.870 | 47.619 | 15.31 | 0.00 | 40.79 | 4.17 |
3566 | 7340 | 3.088194 | AGCTTGTGCAAGAATGTTGTG | 57.912 | 42.857 | 15.31 | 0.00 | 40.79 | 3.33 |
3568 | 7342 | 4.224433 | CAGTAGCTTGTGCAAGAATGTTG | 58.776 | 43.478 | 15.31 | 3.62 | 40.79 | 3.33 |
3604 | 7379 | 5.627499 | TTTATCACAGCTGCCTTAAACTG | 57.373 | 39.130 | 15.27 | 1.53 | 36.22 | 3.16 |
3622 | 7397 | 6.127842 | ACGTTTTACTGGATTTCCGCATTTAT | 60.128 | 34.615 | 0.00 | 0.00 | 39.43 | 1.40 |
3623 | 7398 | 5.181622 | ACGTTTTACTGGATTTCCGCATTTA | 59.818 | 36.000 | 0.00 | 0.00 | 39.43 | 1.40 |
3626 | 7401 | 3.078837 | ACGTTTTACTGGATTTCCGCAT | 58.921 | 40.909 | 0.00 | 0.00 | 39.43 | 4.73 |
3634 | 7409 | 1.074889 | AGGGGCAACGTTTTACTGGAT | 59.925 | 47.619 | 0.00 | 0.00 | 37.60 | 3.41 |
3637 | 7412 | 2.496111 | TGTAGGGGCAACGTTTTACTG | 58.504 | 47.619 | 0.00 | 0.00 | 37.60 | 2.74 |
3663 | 7440 | 9.391006 | TCTAACATTAATCTAAAGCATCCGTTT | 57.609 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
3666 | 7443 | 8.012241 | GCTTCTAACATTAATCTAAAGCATCCG | 58.988 | 37.037 | 10.42 | 0.00 | 38.16 | 4.18 |
3667 | 7444 | 9.061435 | AGCTTCTAACATTAATCTAAAGCATCC | 57.939 | 33.333 | 14.78 | 0.00 | 40.14 | 3.51 |
3669 | 7446 | 9.844257 | AGAGCTTCTAACATTAATCTAAAGCAT | 57.156 | 29.630 | 14.78 | 5.59 | 40.14 | 3.79 |
3670 | 7447 | 9.319143 | GAGAGCTTCTAACATTAATCTAAAGCA | 57.681 | 33.333 | 14.78 | 0.00 | 40.14 | 3.91 |
3671 | 7448 | 9.319143 | TGAGAGCTTCTAACATTAATCTAAAGC | 57.681 | 33.333 | 0.00 | 0.00 | 38.46 | 3.51 |
3676 | 7453 | 7.044798 | GGTGTGAGAGCTTCTAACATTAATCT | 58.955 | 38.462 | 6.63 | 0.00 | 39.87 | 2.40 |
3677 | 7454 | 6.818644 | TGGTGTGAGAGCTTCTAACATTAATC | 59.181 | 38.462 | 6.63 | 0.00 | 39.87 | 1.75 |
3679 | 7456 | 6.109156 | TGGTGTGAGAGCTTCTAACATTAA | 57.891 | 37.500 | 6.63 | 0.00 | 39.87 | 1.40 |
3700 | 7638 | 1.550130 | TTTCGCTAGACCCCACCTGG | 61.550 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3715 | 7653 | 3.242870 | GGCTTGCCTTGTATGATCTTTCG | 60.243 | 47.826 | 4.11 | 0.00 | 0.00 | 3.46 |
3719 | 7657 | 3.659183 | AAGGCTTGCCTTGTATGATCT | 57.341 | 42.857 | 24.19 | 0.00 | 0.00 | 2.75 |
3723 | 7661 | 3.081061 | TGTGTAAGGCTTGCCTTGTATG | 58.919 | 45.455 | 30.51 | 0.00 | 0.00 | 2.39 |
3740 | 7678 | 2.615493 | CCCGGAGCTTCTTACATTGTGT | 60.615 | 50.000 | 0.73 | 0.00 | 0.00 | 3.72 |
3742 | 7680 | 1.906574 | TCCCGGAGCTTCTTACATTGT | 59.093 | 47.619 | 0.73 | 0.00 | 0.00 | 2.71 |
3749 | 7687 | 1.290134 | ATCCTTTCCCGGAGCTTCTT | 58.710 | 50.000 | 0.73 | 0.00 | 36.31 | 2.52 |
3751 | 7689 | 3.493767 | ATAATCCTTTCCCGGAGCTTC | 57.506 | 47.619 | 0.73 | 0.00 | 36.31 | 3.86 |
3759 | 7697 | 3.665190 | CTGCCTCGTATAATCCTTTCCC | 58.335 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3760 | 7698 | 3.067833 | GCTGCCTCGTATAATCCTTTCC | 58.932 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
3761 | 7699 | 3.067833 | GGCTGCCTCGTATAATCCTTTC | 58.932 | 50.000 | 12.43 | 0.00 | 0.00 | 2.62 |
3763 | 7701 | 2.330216 | AGGCTGCCTCGTATAATCCTT | 58.670 | 47.619 | 17.22 | 0.00 | 0.00 | 3.36 |
3764 | 7702 | 2.016905 | AGGCTGCCTCGTATAATCCT | 57.983 | 50.000 | 17.22 | 0.00 | 0.00 | 3.24 |
3765 | 7703 | 2.841442 | AAGGCTGCCTCGTATAATCC | 57.159 | 50.000 | 23.61 | 0.00 | 30.89 | 3.01 |
3767 | 7705 | 2.302157 | GGGTAAGGCTGCCTCGTATAAT | 59.698 | 50.000 | 23.61 | 6.86 | 30.89 | 1.28 |
3769 | 7707 | 1.335145 | GGGTAAGGCTGCCTCGTATA | 58.665 | 55.000 | 23.61 | 7.77 | 30.89 | 1.47 |
3770 | 7708 | 1.408453 | GGGGTAAGGCTGCCTCGTAT | 61.408 | 60.000 | 23.61 | 8.92 | 30.89 | 3.06 |
3774 | 7733 | 2.301738 | ACTGGGGTAAGGCTGCCTC | 61.302 | 63.158 | 23.61 | 10.46 | 30.89 | 4.70 |
3856 | 7827 | 3.346315 | TGGATGTGAGCGTTTGAATGAT | 58.654 | 40.909 | 0.00 | 0.00 | 0.00 | 2.45 |
3859 | 7830 | 4.094887 | GTGTATGGATGTGAGCGTTTGAAT | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3882 | 7853 | 4.201910 | TGGCTCTTCAAAAACACTTTCTCG | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
3889 | 7860 | 4.105486 | GAGTTGTGGCTCTTCAAAAACAC | 58.895 | 43.478 | 0.00 | 0.00 | 32.99 | 3.32 |
3931 | 7904 | 3.889815 | TGAGATCCAAATTGGCTGGTAG | 58.110 | 45.455 | 7.24 | 0.00 | 37.47 | 3.18 |
4001 | 7974 | 2.602660 | GTGAACAATGTGTGGTGTTTGC | 59.397 | 45.455 | 0.00 | 0.00 | 38.07 | 3.68 |
4008 | 7981 | 3.894782 | TTGATCGTGAACAATGTGTGG | 57.105 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
4025 | 7998 | 1.786441 | ACCCTTTCCCACCTTGATTGA | 59.214 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4035 | 8008 | 6.296145 | CCTTGCAAATTATTTACCCTTTCCCA | 60.296 | 38.462 | 0.00 | 0.00 | 0.00 | 4.37 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.