Multiple sequence alignment - TraesCS1B01G312300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G312300 chr1B 100.000 2462 0 0 1 2462 535919299 535916838 0 4547
1 TraesCS1B01G312300 chr7D 93.893 2407 134 9 1 2404 550636439 550638835 0 3618
2 TraesCS1B01G312300 chr5B 93.667 2400 141 6 8 2404 478553211 478550820 0 3579
3 TraesCS1B01G312300 chr5B 93.292 2415 151 8 1 2411 184289498 184291905 0 3552
4 TraesCS1B01G312300 chr5B 92.931 2405 149 8 1 2404 530258344 530260728 0 3480
5 TraesCS1B01G312300 chr5D 93.516 2406 141 9 1 2404 350368978 350366586 0 3565
6 TraesCS1B01G312300 chr5D 93.225 2406 151 7 1 2404 41770811 41768416 0 3530
7 TraesCS1B01G312300 chr3B 93.353 2407 147 7 1 2404 503769680 503772076 0 3546
8 TraesCS1B01G312300 chr7B 92.949 2411 160 6 1 2404 584020813 584023220 0 3502
9 TraesCS1B01G312300 chr1D 92.810 2406 163 6 1 2404 2901083 2903480 0 3476


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G312300 chr1B 535916838 535919299 2461 True 4547 4547 100.000 1 2462 1 chr1B.!!$R1 2461
1 TraesCS1B01G312300 chr7D 550636439 550638835 2396 False 3618 3618 93.893 1 2404 1 chr7D.!!$F1 2403
2 TraesCS1B01G312300 chr5B 478550820 478553211 2391 True 3579 3579 93.667 8 2404 1 chr5B.!!$R1 2396
3 TraesCS1B01G312300 chr5B 184289498 184291905 2407 False 3552 3552 93.292 1 2411 1 chr5B.!!$F1 2410
4 TraesCS1B01G312300 chr5B 530258344 530260728 2384 False 3480 3480 92.931 1 2404 1 chr5B.!!$F2 2403
5 TraesCS1B01G312300 chr5D 350366586 350368978 2392 True 3565 3565 93.516 1 2404 1 chr5D.!!$R2 2403
6 TraesCS1B01G312300 chr5D 41768416 41770811 2395 True 3530 3530 93.225 1 2404 1 chr5D.!!$R1 2403
7 TraesCS1B01G312300 chr3B 503769680 503772076 2396 False 3546 3546 93.353 1 2404 1 chr3B.!!$F1 2403
8 TraesCS1B01G312300 chr7B 584020813 584023220 2407 False 3502 3502 92.949 1 2404 1 chr7B.!!$F1 2403
9 TraesCS1B01G312300 chr1D 2901083 2903480 2397 False 3476 3476 92.810 1 2404 1 chr1D.!!$F1 2403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 792 0.038166 TGGATCCAAGTGTCCAAGCC 59.962 55.0 13.46 0.0 41.36 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1640 0.034896 CCTACCACCGCAAGTTCACT 59.965 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 7.011763 GCTTGTGTTGAATCATGCTTAGATCTA 59.988 37.037 0.00 0.00 33.79 1.98
148 149 1.818060 GTGGTCCATTTGTAGCATGCA 59.182 47.619 21.98 2.77 0.00 3.96
156 157 5.242615 TCCATTTGTAGCATGCAGTTTGTTA 59.757 36.000 21.98 0.00 27.68 2.41
180 181 5.480642 AGATGTATGTTCCTGCTCATAGG 57.519 43.478 0.00 0.00 39.29 2.57
276 278 3.442977 GCTTCTGCTTTCATGGATTGTCT 59.557 43.478 0.00 0.00 36.03 3.41
354 356 2.263077 CGCAGACGCAAGATCTTAGTT 58.737 47.619 7.86 0.00 43.62 2.24
399 401 3.256383 CCAGTTTGCTCCATCATTTGTCA 59.744 43.478 0.00 0.00 0.00 3.58
408 410 3.007940 TCCATCATTTGTCAAGGACTCGT 59.992 43.478 0.00 0.00 33.15 4.18
420 422 1.984066 GGACTCGTAGCCTATGTCCT 58.016 55.000 11.69 0.00 42.63 3.85
498 503 0.390472 CGTTGAGCCAACTCCTCCTC 60.390 60.000 13.76 0.00 42.74 3.71
501 506 0.616111 TGAGCCAACTCCTCCTCCTC 60.616 60.000 0.00 0.00 42.74 3.71
503 508 1.613630 GCCAACTCCTCCTCCTCCA 60.614 63.158 0.00 0.00 0.00 3.86
509 523 2.365370 CCTCCTCCTCCAGCTGCT 60.365 66.667 8.66 0.00 0.00 4.24
510 524 2.733669 CCTCCTCCTCCAGCTGCTG 61.734 68.421 22.44 22.44 0.00 4.41
562 576 4.770795 CAAAGAAGGATGGTAGGTCGAAT 58.229 43.478 0.00 0.00 0.00 3.34
580 594 2.814805 ATAACATGAAGTGGCAGCCT 57.185 45.000 14.15 0.00 0.00 4.58
620 634 2.407090 TGAACAAGATGTGTGAGCTCG 58.593 47.619 9.64 0.00 40.60 5.03
748 763 1.507140 ACAACCACCTGAGGAAGTGA 58.493 50.000 4.99 0.00 36.01 3.41
777 792 0.038166 TGGATCCAAGTGTCCAAGCC 59.962 55.000 13.46 0.00 41.36 4.35
789 804 1.135053 GTCCAAGCCGAGAGACCTTAC 60.135 57.143 0.00 0.00 0.00 2.34
1078 1093 0.329596 GCCTCTTGGTTCTCCCATGT 59.670 55.000 0.00 0.00 44.74 3.21
1081 1096 2.240667 CCTCTTGGTTCTCCCATGTCAT 59.759 50.000 0.00 0.00 44.74 3.06
1135 1150 4.096003 GCCCTGACAAGCCCGCTA 62.096 66.667 0.00 0.00 0.00 4.26
1159 1174 3.695830 AGCCCTTCGACAAGACATTTA 57.304 42.857 0.00 0.00 0.00 1.40
1165 1180 4.324267 CTTCGACAAGACATTTAACCCCT 58.676 43.478 0.00 0.00 0.00 4.79
1237 1252 1.159285 CTTTTGCAGCATGACCGAGA 58.841 50.000 0.00 0.00 39.69 4.04
1283 1298 4.785453 GGAGTGCAAGCCCCTCGG 62.785 72.222 0.00 0.00 0.00 4.63
1391 1406 1.943730 AACAAGGCCCAGGGTGTTGA 61.944 55.000 22.66 0.00 33.09 3.18
1410 1425 2.045438 TTCGTTGCCATGGCCGAT 60.045 55.556 33.44 0.00 41.09 4.18
1425 1440 1.021390 CCGATGCTCACAGGGTGTTC 61.021 60.000 0.00 0.00 34.79 3.18
1520 1535 2.890474 GGCGGTTGCGACGATGAT 60.890 61.111 0.00 0.00 44.10 2.45
1600 1615 5.249622 TGGTCTGTATATTTTGGTGAGGTGA 59.750 40.000 0.00 0.00 0.00 4.02
1625 1640 2.154567 ACTAACCCCTCACGCTGATA 57.845 50.000 0.00 0.00 0.00 2.15
1750 1765 4.570369 GCTTTACTTCTCTTCTGCTCCATC 59.430 45.833 0.00 0.00 0.00 3.51
1751 1766 5.728471 CTTTACTTCTCTTCTGCTCCATCA 58.272 41.667 0.00 0.00 0.00 3.07
1822 1839 2.874701 GCTTCAACTCTTGCTCTTGTGA 59.125 45.455 0.00 0.00 0.00 3.58
1839 1856 4.365514 TGTGAATTTCTAGGGCAAGTGA 57.634 40.909 0.00 0.00 0.00 3.41
1842 1859 5.880332 TGTGAATTTCTAGGGCAAGTGATAC 59.120 40.000 0.00 0.00 0.00 2.24
1963 1981 3.755434 GCAGGCAGCAGAACAAGT 58.245 55.556 0.00 0.00 44.79 3.16
1971 1989 2.878406 GCAGCAGAACAAGTTTACTCCA 59.122 45.455 0.00 0.00 0.00 3.86
2031 2049 3.020984 GACAAGGTTGGAGGTGTCAAAA 58.979 45.455 0.00 0.00 40.10 2.44
2073 2091 0.538057 TCAGTTTGGGCTGAAGCTGG 60.538 55.000 1.74 0.00 41.93 4.85
2126 2144 1.539157 TTGCTGTGTTGTGGTGTTGA 58.461 45.000 0.00 0.00 0.00 3.18
2172 2190 1.183549 AGCTCACCAACTAGGGTACG 58.816 55.000 0.00 0.00 43.89 3.67
2250 2269 0.534652 GCCAATGCAGCCAACCAAAA 60.535 50.000 0.00 0.00 37.47 2.44
2294 2313 1.798626 TGCAGGGACTCTAGATGCAT 58.201 50.000 12.77 0.00 41.65 3.96
2310 2329 3.808466 TGCATGCAACCAAACAACTTA 57.192 38.095 20.30 0.00 0.00 2.24
2317 2336 4.400884 TGCAACCAAACAACTTACAGATGT 59.599 37.500 0.00 0.00 32.27 3.06
2319 2338 5.449862 GCAACCAAACAACTTACAGATGTCA 60.450 40.000 0.00 0.00 29.45 3.58
2347 2366 3.319122 GGATCTGTTTTTGCTCAACCAGT 59.681 43.478 0.00 0.00 0.00 4.00
2350 2369 4.776349 TCTGTTTTTGCTCAACCAGTCTA 58.224 39.130 0.00 0.00 0.00 2.59
2366 2385 5.419471 ACCAGTCTAGGTTGAGAAGTGTATC 59.581 44.000 0.00 0.00 39.34 2.24
2367 2386 5.654650 CCAGTCTAGGTTGAGAAGTGTATCT 59.345 44.000 0.00 0.00 0.00 1.98
2375 2394 5.414360 GTTGAGAAGTGTATCTGATGCAGA 58.586 41.667 8.75 0.00 44.99 4.26
2404 2423 4.539083 ACGGCAACCAGACACGCA 62.539 61.111 0.00 0.00 0.00 5.24
2405 2424 3.716006 CGGCAACCAGACACGCAG 61.716 66.667 0.00 0.00 0.00 5.18
2411 2430 0.466543 AACCAGACACGCAGTTGGTA 59.533 50.000 12.38 0.00 41.61 3.25
2412 2431 0.249741 ACCAGACACGCAGTTGGTAC 60.250 55.000 11.13 0.00 41.61 3.34
2413 2432 0.033504 CCAGACACGCAGTTGGTACT 59.966 55.000 0.00 0.00 41.61 2.73
2414 2433 1.540363 CCAGACACGCAGTTGGTACTT 60.540 52.381 0.00 0.00 41.61 2.24
2415 2434 2.210116 CAGACACGCAGTTGGTACTTT 58.790 47.619 0.00 0.00 41.61 2.66
2416 2435 2.032894 CAGACACGCAGTTGGTACTTTG 60.033 50.000 0.00 0.00 41.61 2.77
2417 2436 1.263217 GACACGCAGTTGGTACTTTGG 59.737 52.381 0.00 0.00 41.61 3.28
2418 2437 0.040425 CACGCAGTTGGTACTTTGGC 60.040 55.000 0.00 0.00 41.61 4.52
2419 2438 0.464735 ACGCAGTTGGTACTTTGGCA 60.465 50.000 0.00 0.00 37.78 4.92
2420 2439 0.040425 CGCAGTTGGTACTTTGGCAC 60.040 55.000 0.00 0.00 30.26 5.01
2421 2440 1.318576 GCAGTTGGTACTTTGGCACT 58.681 50.000 0.00 0.00 30.26 4.40
2422 2441 1.001378 GCAGTTGGTACTTTGGCACTG 60.001 52.381 0.00 0.00 35.71 3.66
2423 2442 2.571212 CAGTTGGTACTTTGGCACTGA 58.429 47.619 0.00 0.00 34.74 3.41
2424 2443 2.549754 CAGTTGGTACTTTGGCACTGAG 59.450 50.000 0.00 0.00 34.74 3.35
2425 2444 1.880027 GTTGGTACTTTGGCACTGAGG 59.120 52.381 0.00 0.00 0.00 3.86
2426 2445 1.136828 TGGTACTTTGGCACTGAGGT 58.863 50.000 0.00 0.00 0.00 3.85
2427 2446 1.493022 TGGTACTTTGGCACTGAGGTT 59.507 47.619 0.00 0.00 0.00 3.50
2428 2447 2.092103 TGGTACTTTGGCACTGAGGTTT 60.092 45.455 0.00 0.00 0.00 3.27
2429 2448 3.136809 TGGTACTTTGGCACTGAGGTTTA 59.863 43.478 0.00 0.00 0.00 2.01
2430 2449 3.751698 GGTACTTTGGCACTGAGGTTTAG 59.248 47.826 0.00 0.00 0.00 1.85
2431 2450 2.863809 ACTTTGGCACTGAGGTTTAGG 58.136 47.619 0.00 0.00 0.00 2.69
2432 2451 2.174854 ACTTTGGCACTGAGGTTTAGGT 59.825 45.455 0.00 0.00 0.00 3.08
2433 2452 2.561478 TTGGCACTGAGGTTTAGGTC 57.439 50.000 0.00 0.00 0.00 3.85
2434 2453 0.320374 TGGCACTGAGGTTTAGGTCG 59.680 55.000 0.00 0.00 0.00 4.79
2435 2454 0.606604 GGCACTGAGGTTTAGGTCGA 59.393 55.000 0.00 0.00 0.00 4.20
2436 2455 1.404315 GGCACTGAGGTTTAGGTCGAG 60.404 57.143 0.00 0.00 0.00 4.04
2437 2456 1.404315 GCACTGAGGTTTAGGTCGAGG 60.404 57.143 0.00 0.00 0.00 4.63
2438 2457 0.896226 ACTGAGGTTTAGGTCGAGGC 59.104 55.000 0.00 0.00 0.00 4.70
2439 2458 0.179134 CTGAGGTTTAGGTCGAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
2440 2459 1.518792 GAGGTTTAGGTCGAGGCGC 60.519 63.158 0.00 0.00 0.00 6.53
2441 2460 2.510918 GGTTTAGGTCGAGGCGCC 60.511 66.667 21.89 21.89 0.00 6.53
2442 2461 2.510918 GTTTAGGTCGAGGCGCCC 60.511 66.667 26.15 14.23 0.00 6.13
2443 2462 2.682494 TTTAGGTCGAGGCGCCCT 60.682 61.111 26.15 15.54 36.03 5.19
2444 2463 1.380246 TTTAGGTCGAGGCGCCCTA 60.380 57.895 26.15 14.36 31.76 3.53
2445 2464 0.757935 TTTAGGTCGAGGCGCCCTAT 60.758 55.000 26.15 3.93 31.76 2.57
2446 2465 1.461091 TTAGGTCGAGGCGCCCTATG 61.461 60.000 26.15 10.92 31.76 2.23
2447 2466 2.347691 TAGGTCGAGGCGCCCTATGA 62.348 60.000 26.15 13.40 31.76 2.15
2448 2467 2.336809 GTCGAGGCGCCCTATGAG 59.663 66.667 26.15 8.48 31.76 2.90
2449 2468 2.123854 TCGAGGCGCCCTATGAGT 60.124 61.111 26.15 0.94 31.76 3.41
2450 2469 1.149854 TCGAGGCGCCCTATGAGTA 59.850 57.895 26.15 0.00 31.76 2.59
2451 2470 0.466739 TCGAGGCGCCCTATGAGTAA 60.467 55.000 26.15 0.00 31.76 2.24
2452 2471 0.387929 CGAGGCGCCCTATGAGTAAA 59.612 55.000 26.15 0.00 31.76 2.01
2453 2472 1.202486 CGAGGCGCCCTATGAGTAAAA 60.202 52.381 26.15 0.00 31.76 1.52
2454 2473 2.548067 CGAGGCGCCCTATGAGTAAAAT 60.548 50.000 26.15 0.00 31.76 1.82
2455 2474 3.477530 GAGGCGCCCTATGAGTAAAATT 58.522 45.455 26.15 0.00 31.76 1.82
2456 2475 3.883489 GAGGCGCCCTATGAGTAAAATTT 59.117 43.478 26.15 0.00 31.76 1.82
2457 2476 3.632145 AGGCGCCCTATGAGTAAAATTTG 59.368 43.478 26.15 0.00 28.47 2.32
2458 2477 3.630312 GGCGCCCTATGAGTAAAATTTGA 59.370 43.478 18.11 0.00 0.00 2.69
2459 2478 4.278419 GGCGCCCTATGAGTAAAATTTGAT 59.722 41.667 18.11 0.00 0.00 2.57
2460 2479 5.215160 GCGCCCTATGAGTAAAATTTGATG 58.785 41.667 0.00 0.00 0.00 3.07
2461 2480 5.215160 CGCCCTATGAGTAAAATTTGATGC 58.785 41.667 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.618343 GCCCTACCACAAATTGCAACT 59.382 47.619 0.00 0.00 0.00 3.16
111 112 5.133221 GGACCACCAATAGCTACAAATCAT 58.867 41.667 0.00 0.00 35.97 2.45
148 149 8.267894 AGCAGGAACATACATCTATAACAAACT 58.732 33.333 0.00 0.00 0.00 2.66
156 157 6.728164 ACCTATGAGCAGGAACATACATCTAT 59.272 38.462 0.00 0.00 39.18 1.98
180 181 2.389962 TACCAAGCATACCGGACAAC 57.610 50.000 9.46 0.00 0.00 3.32
276 278 3.348647 AGCATAGCACACAACATACCA 57.651 42.857 0.00 0.00 0.00 3.25
354 356 2.642254 CGGACACGACAAGGGCCTA 61.642 63.158 6.41 0.00 44.60 3.93
399 401 2.308690 GGACATAGGCTACGAGTCCTT 58.691 52.381 24.40 0.00 44.10 3.36
408 410 3.165875 GTGCCATCTAGGACATAGGCTA 58.834 50.000 0.00 0.00 42.46 3.93
420 422 2.702478 CCTCTGAATCAGGTGCCATCTA 59.298 50.000 10.71 0.00 31.51 1.98
509 523 1.290203 GCTAGCTTGATTACAGCGCA 58.710 50.000 11.47 0.00 0.00 6.09
510 524 1.260033 CTGCTAGCTTGATTACAGCGC 59.740 52.381 17.23 0.00 34.96 5.92
516 530 2.696989 TGCTGCTGCTAGCTTGATTA 57.303 45.000 17.23 0.00 42.97 1.75
562 576 2.584835 AAGGCTGCCACTTCATGTTA 57.415 45.000 22.65 0.00 0.00 2.41
620 634 4.637091 GTCAGTCCTAACTCCACTAGAGAC 59.363 50.000 0.00 0.00 46.50 3.36
748 763 3.261897 ACACTTGGATCCATCGACTTCTT 59.738 43.478 17.06 0.00 0.00 2.52
777 792 2.408022 CGCCGGTAAGGTCTCTCG 59.592 66.667 1.90 0.00 43.70 4.04
1078 1093 1.580059 GGTGTCCCAGGGAAGTATGA 58.420 55.000 10.89 0.00 31.38 2.15
1081 1096 1.611261 CCGGTGTCCCAGGGAAGTA 60.611 63.158 10.89 0.00 31.38 2.24
1153 1168 5.435041 TCCTATCATGGAAGGGGTTAAATGT 59.565 40.000 12.61 0.00 33.40 2.71
1165 1180 5.781827 TCTCTTCCTCTTCCTATCATGGAA 58.218 41.667 0.00 0.00 43.16 3.53
1237 1252 2.448582 TTGCCACCTCCTTCACCGT 61.449 57.895 0.00 0.00 0.00 4.83
1391 1406 2.819984 ATCGGCCATGGCAACGAACT 62.820 55.000 36.56 19.97 44.11 3.01
1410 1425 1.451504 CCAGAACACCCTGTGAGCA 59.548 57.895 0.49 0.00 36.96 4.26
1509 1524 0.380378 TCATCGTCATCATCGTCGCA 59.620 50.000 0.00 0.00 0.00 5.10
1520 1535 0.247537 CGTCGTCATCGTCATCGTCA 60.248 55.000 0.00 0.00 38.33 4.35
1600 1615 5.577100 TCAGCGTGAGGGGTTAGTATATAT 58.423 41.667 0.00 0.00 0.00 0.86
1625 1640 0.034896 CCTACCACCGCAAGTTCACT 59.965 55.000 0.00 0.00 0.00 3.41
1750 1765 6.400303 GCAAGCAAAGTAGCACACAAATAATG 60.400 38.462 0.00 0.00 36.85 1.90
1751 1766 5.634859 GCAAGCAAAGTAGCACACAAATAAT 59.365 36.000 0.00 0.00 36.85 1.28
1822 1839 3.877508 GCGTATCACTTGCCCTAGAAATT 59.122 43.478 0.00 0.00 0.00 1.82
1839 1856 4.412933 CCGATGAACACGGCGTAT 57.587 55.556 14.22 0.00 43.74 3.06
1963 1981 1.122632 TCGCACCCAGGTGGAGTAAA 61.123 55.000 18.24 0.00 45.49 2.01
1990 2008 0.107017 ACTGTCAACACTGCTGCCTT 60.107 50.000 0.00 0.00 0.00 4.35
2011 2029 2.818751 TTTGACACCTCCAACCTTGT 57.181 45.000 0.00 0.00 0.00 3.16
2031 2049 1.668826 TCCACCTTAGCACCTTCCAT 58.331 50.000 0.00 0.00 0.00 3.41
2073 2091 2.869192 GGGCGAAGATGATGAAGTTCTC 59.131 50.000 4.17 0.36 0.00 2.87
2126 2144 3.943381 CACAATGATCACACCTAGCACAT 59.057 43.478 0.00 0.00 0.00 3.21
2172 2190 2.093783 GCGTACATGTTGTGCTTACCTC 59.906 50.000 2.30 0.00 30.49 3.85
2250 2269 7.811117 TTAGGTAATACACAAGTGCACTTTT 57.189 32.000 29.23 20.89 33.11 2.27
2294 2313 4.400884 ACATCTGTAAGTTGTTTGGTTGCA 59.599 37.500 0.00 0.00 44.00 4.08
2317 2336 8.677300 GTTGAGCAAAAACAGATCCTAATATGA 58.323 33.333 0.00 0.00 0.00 2.15
2319 2338 7.615365 TGGTTGAGCAAAAACAGATCCTAATAT 59.385 33.333 0.00 0.00 0.00 1.28
2347 2366 6.183360 GCATCAGATACACTTCTCAACCTAGA 60.183 42.308 0.00 0.00 0.00 2.43
2350 2369 4.223700 TGCATCAGATACACTTCTCAACCT 59.776 41.667 0.00 0.00 0.00 3.50
2366 2385 2.375173 TGCTACAGTGTCTGCATCAG 57.625 50.000 16.71 1.79 34.37 2.90
2367 2386 2.807967 GTTTGCTACAGTGTCTGCATCA 59.192 45.455 19.92 10.48 34.37 3.07
2375 2394 0.661020 GTTGCCGTTTGCTACAGTGT 59.339 50.000 0.00 0.00 43.93 3.55
2397 2416 1.263217 CCAAAGTACCAACTGCGTGTC 59.737 52.381 0.00 0.00 35.62 3.67
2404 2423 2.487265 CCTCAGTGCCAAAGTACCAACT 60.487 50.000 0.00 0.00 37.65 3.16
2405 2424 1.880027 CCTCAGTGCCAAAGTACCAAC 59.120 52.381 0.00 0.00 0.00 3.77
2411 2430 2.174854 ACCTAAACCTCAGTGCCAAAGT 59.825 45.455 0.00 0.00 0.00 2.66
2412 2431 2.814336 GACCTAAACCTCAGTGCCAAAG 59.186 50.000 0.00 0.00 0.00 2.77
2413 2432 2.808933 CGACCTAAACCTCAGTGCCAAA 60.809 50.000 0.00 0.00 0.00 3.28
2414 2433 1.270625 CGACCTAAACCTCAGTGCCAA 60.271 52.381 0.00 0.00 0.00 4.52
2415 2434 0.320374 CGACCTAAACCTCAGTGCCA 59.680 55.000 0.00 0.00 0.00 4.92
2416 2435 0.606604 TCGACCTAAACCTCAGTGCC 59.393 55.000 0.00 0.00 0.00 5.01
2417 2436 1.404315 CCTCGACCTAAACCTCAGTGC 60.404 57.143 0.00 0.00 0.00 4.40
2418 2437 1.404315 GCCTCGACCTAAACCTCAGTG 60.404 57.143 0.00 0.00 0.00 3.66
2419 2438 0.896226 GCCTCGACCTAAACCTCAGT 59.104 55.000 0.00 0.00 0.00 3.41
2420 2439 0.179134 CGCCTCGACCTAAACCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
2421 2440 1.888018 CGCCTCGACCTAAACCTCA 59.112 57.895 0.00 0.00 0.00 3.86
2422 2441 1.518792 GCGCCTCGACCTAAACCTC 60.519 63.158 0.00 0.00 0.00 3.85
2423 2442 2.577593 GCGCCTCGACCTAAACCT 59.422 61.111 0.00 0.00 0.00 3.50
2424 2443 2.510918 GGCGCCTCGACCTAAACC 60.511 66.667 22.15 0.00 0.00 3.27
2431 2450 1.170919 TACTCATAGGGCGCCTCGAC 61.171 60.000 28.56 9.72 34.61 4.20
2432 2451 0.466739 TTACTCATAGGGCGCCTCGA 60.467 55.000 28.56 16.08 34.61 4.04
2433 2452 0.387929 TTTACTCATAGGGCGCCTCG 59.612 55.000 28.56 12.42 34.61 4.63
2434 2453 2.614829 TTTTACTCATAGGGCGCCTC 57.385 50.000 28.56 16.85 34.61 4.70
2435 2454 3.577805 AATTTTACTCATAGGGCGCCT 57.422 42.857 28.56 15.07 37.71 5.52
2436 2455 3.630312 TCAAATTTTACTCATAGGGCGCC 59.370 43.478 21.18 21.18 0.00 6.53
2437 2456 4.893424 TCAAATTTTACTCATAGGGCGC 57.107 40.909 0.00 0.00 0.00 6.53
2438 2457 5.215160 GCATCAAATTTTACTCATAGGGCG 58.785 41.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.