Multiple sequence alignment - TraesCS1B01G311400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G311400 chr1B 100.000 4086 0 0 1 4086 534672767 534668682 0.000000e+00 7546.0
1 TraesCS1B01G311400 chr1D 91.909 964 40 11 1 949 398983219 398982279 0.000000e+00 1314.0
2 TraesCS1B01G311400 chr1D 93.095 782 47 6 2892 3669 398980371 398979593 0.000000e+00 1138.0
3 TraesCS1B01G311400 chr1D 93.775 755 32 4 947 1688 398982216 398981464 0.000000e+00 1120.0
4 TraesCS1B01G311400 chr1D 92.077 568 32 7 2142 2706 398981068 398980511 0.000000e+00 787.0
5 TraesCS1B01G311400 chr1D 91.968 249 12 4 1691 1937 398981370 398981128 3.910000e-90 342.0
6 TraesCS1B01G311400 chr1D 95.122 41 2 0 2849 2889 398980440 398980400 9.480000e-07 65.8
7 TraesCS1B01G311400 chr1A 90.714 980 51 16 1 949 495709859 495708889 0.000000e+00 1269.0
8 TraesCS1B01G311400 chr1A 93.588 811 28 8 2795 3584 495707055 495706248 0.000000e+00 1188.0
9 TraesCS1B01G311400 chr1A 92.647 816 39 9 947 1748 495708821 495708013 0.000000e+00 1155.0
10 TraesCS1B01G311400 chr1A 92.823 627 32 7 2085 2706 495707704 495707086 0.000000e+00 896.0
11 TraesCS1B01G311400 chr1A 94.326 141 6 2 1743 1883 495707913 495707775 8.900000e-52 215.0
12 TraesCS1B01G311400 chr1A 76.904 407 40 25 3683 4059 495706035 495705653 9.020000e-42 182.0
13 TraesCS1B01G311400 chr1A 93.103 87 5 1 2691 2777 478354467 478354552 4.290000e-25 126.0
14 TraesCS1B01G311400 chr4B 85.477 241 25 6 2094 2334 140960342 140960112 4.080000e-60 243.0
15 TraesCS1B01G311400 chr4B 86.550 171 20 2 1627 1795 140960621 140960452 6.970000e-43 185.0
16 TraesCS1B01G311400 chr4B 87.603 121 9 3 1825 1944 140960453 140960338 7.120000e-28 135.0
17 TraesCS1B01G311400 chr4B 100.000 38 0 0 2783 2820 140959555 140959518 2.040000e-08 71.3
18 TraesCS1B01G311400 chr7B 99.219 128 1 0 1954 2081 20054255 20054382 8.830000e-57 231.0
19 TraesCS1B01G311400 chr7B 95.522 134 6 0 1951 2084 133487100 133486967 8.900000e-52 215.0
20 TraesCS1B01G311400 chr7B 93.007 143 10 0 1941 2083 332242748 332242890 4.140000e-50 209.0
21 TraesCS1B01G311400 chr7B 90.426 94 7 2 2685 2777 537827919 537828011 5.550000e-24 122.0
22 TraesCS1B01G311400 chr5B 96.947 131 3 1 1955 2084 44372028 44372158 6.880000e-53 219.0
23 TraesCS1B01G311400 chr5B 90.968 155 13 1 1954 2107 424361579 424361733 1.490000e-49 207.0
24 TraesCS1B01G311400 chr5B 97.436 78 1 1 2704 2780 526558864 526558787 9.220000e-27 132.0
25 TraesCS1B01G311400 chr2D 94.245 139 7 1 1947 2085 619720679 619720542 1.150000e-50 211.0
26 TraesCS1B01G311400 chr2D 89.506 162 11 6 1922 2082 151016178 151016022 2.490000e-47 200.0
27 TraesCS1B01G311400 chr2D 87.283 173 15 7 1922 2092 213893557 213893390 1.500000e-44 191.0
28 TraesCS1B01G311400 chr6D 88.095 168 14 6 1922 2088 264060163 264060001 1.160000e-45 195.0
29 TraesCS1B01G311400 chr6D 96.429 84 3 0 2697 2780 15372643 15372560 5.510000e-29 139.0
30 TraesCS1B01G311400 chr6D 96.386 83 3 0 2695 2777 99730298 99730216 1.980000e-28 137.0
31 TraesCS1B01G311400 chr3D 86.076 158 21 1 2929 3086 448266244 448266400 7.020000e-38 169.0
32 TraesCS1B01G311400 chr3B 87.075 147 19 0 2940 3086 587966480 587966626 2.530000e-37 167.0
33 TraesCS1B01G311400 chr3A 87.075 147 19 0 2940 3086 589537571 589537717 2.530000e-37 167.0
34 TraesCS1B01G311400 chr3A 94.805 77 4 0 2704 2780 120809624 120809548 1.990000e-23 121.0
35 TraesCS1B01G311400 chr7D 97.297 74 2 0 2704 2777 220083651 220083724 4.290000e-25 126.0
36 TraesCS1B01G311400 chr7D 97.297 74 2 0 2704 2777 220096430 220096503 4.290000e-25 126.0
37 TraesCS1B01G311400 chr5A 93.902 82 5 0 2696 2777 660190642 660190723 1.540000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G311400 chr1B 534668682 534672767 4085 True 7546.000000 7546 100.000 1 4086 1 chr1B.!!$R1 4085
1 TraesCS1B01G311400 chr1D 398979593 398983219 3626 True 794.466667 1314 92.991 1 3669 6 chr1D.!!$R1 3668
2 TraesCS1B01G311400 chr1A 495705653 495709859 4206 True 817.500000 1269 90.167 1 4059 6 chr1A.!!$R1 4058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 621 0.780002 GCTTGTTTGTCGCATGCTTG 59.220 50.0 17.13 0.45 35.15 4.01 F
701 729 1.010935 CGAGATGCCCGAATCGATGG 61.011 60.0 3.36 0.00 37.35 3.51 F
1774 2090 1.159713 CGCTGTGTGCACTTTCCTGA 61.160 55.0 19.41 0.00 43.06 3.86 F
1973 2297 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 F
1976 2300 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2278 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 R
1955 2279 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.00 46.06 3.85 R
2777 3132 0.320771 CAGGGATAGCATGTACGCCC 60.321 60.0 7.50 7.50 35.79 6.13 R
2780 3135 0.392706 TGGCAGGGATAGCATGTACG 59.607 55.0 0.00 0.00 0.00 3.67 R
3460 3869 0.588252 GTTTTGCAGCGAGCTTCTGA 59.412 50.0 17.78 3.96 45.94 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
468 480 6.034577 GTGATTTGACTCGATTGTGTTCGATA 59.965 38.462 0.00 0.00 46.16 2.92
473 485 4.861210 ACTCGATTGTGTTCGATATCTCC 58.139 43.478 0.34 0.00 46.16 3.71
474 486 4.338400 ACTCGATTGTGTTCGATATCTCCA 59.662 41.667 0.34 0.00 46.16 3.86
526 554 5.930569 GGTTGTTAGGTTATTCACGTTCTCT 59.069 40.000 0.00 0.00 0.00 3.10
536 564 2.088763 ACGTTCTCTGCGATGCGTG 61.089 57.895 0.00 0.00 34.10 5.34
553 581 4.159857 TGCGTGCGTAAAATTATTTGGTC 58.840 39.130 0.00 0.00 0.00 4.02
554 582 3.544682 GCGTGCGTAAAATTATTTGGTCC 59.455 43.478 0.00 0.00 0.00 4.46
558 586 5.571357 GTGCGTAAAATTATTTGGTCCTGTG 59.429 40.000 0.00 0.00 0.00 3.66
562 590 7.148373 GCGTAAAATTATTTGGTCCTGTGTAGA 60.148 37.037 0.00 0.00 0.00 2.59
563 591 8.889717 CGTAAAATTATTTGGTCCTGTGTAGAT 58.110 33.333 0.00 0.00 0.00 1.98
593 621 0.780002 GCTTGTTTGTCGCATGCTTG 59.220 50.000 17.13 0.45 35.15 4.01
594 622 0.780002 CTTGTTTGTCGCATGCTTGC 59.220 50.000 17.13 14.31 45.78 4.01
701 729 1.010935 CGAGATGCCCGAATCGATGG 61.011 60.000 3.36 0.00 37.35 3.51
742 770 5.104941 TGGCAATTGTGTACTAGTGAGCTAT 60.105 40.000 5.39 0.00 0.00 2.97
744 772 6.316390 GGCAATTGTGTACTAGTGAGCTATTT 59.684 38.462 5.39 0.00 0.00 1.40
787 815 3.796717 GCTTTGTGGTTGCTGTTTACTTC 59.203 43.478 0.00 0.00 0.00 3.01
805 833 2.930826 TCGATCCCTTATTGCCCTTC 57.069 50.000 0.00 0.00 0.00 3.46
880 916 3.060615 GCTGGGCTGAACTGCTGG 61.061 66.667 0.00 0.00 0.00 4.85
1089 1197 5.063312 CGCAGGTTTGAATTTGACTTGTTTT 59.937 36.000 0.00 0.00 0.00 2.43
1090 1198 6.254589 CGCAGGTTTGAATTTGACTTGTTTTA 59.745 34.615 0.00 0.00 0.00 1.52
1146 1255 2.758423 GTTCACACCTTTTGTTCCCTGT 59.242 45.455 0.00 0.00 35.67 4.00
1304 1413 4.387026 AGTGAACATTCATTTCCCTCCA 57.613 40.909 0.00 0.00 39.73 3.86
1339 1448 2.772515 AGCCACCAAAGGTATAGGACTC 59.227 50.000 0.00 0.00 32.11 3.36
1407 1516 6.936900 GCCTGCTTTCATAGTCCTTGATATTA 59.063 38.462 0.00 0.00 0.00 0.98
1470 1588 1.889829 CTCCCCGGCTAGATAGAACAG 59.110 57.143 0.00 0.00 0.00 3.16
1533 1651 7.402071 TGGTTCACCTGTCCTTTTATAGAGTAT 59.598 37.037 0.00 0.00 36.82 2.12
1534 1652 7.711339 GGTTCACCTGTCCTTTTATAGAGTATG 59.289 40.741 0.00 0.00 0.00 2.39
1590 1708 9.719355 ACACATAAACAATAGGCGATATCAATA 57.281 29.630 3.12 0.00 0.00 1.90
1599 1717 8.986847 CAATAGGCGATATCAATATCAATCTCC 58.013 37.037 3.12 3.73 39.23 3.71
1600 1718 6.550938 AGGCGATATCAATATCAATCTCCA 57.449 37.500 3.12 0.00 39.23 3.86
1723 1934 3.446873 ACACTTGTGATCACCTTTTTGCA 59.553 39.130 22.85 0.00 0.00 4.08
1741 1952 2.769663 TGCATAGAGGGGTCGTAACATT 59.230 45.455 0.00 0.00 0.00 2.71
1774 2090 1.159713 CGCTGTGTGCACTTTCCTGA 61.160 55.000 19.41 0.00 43.06 3.86
1905 2222 5.769662 TGCAGTGTGTTCTGAAATATCCTTT 59.230 36.000 0.00 0.00 37.61 3.11
1906 2223 6.265196 TGCAGTGTGTTCTGAAATATCCTTTT 59.735 34.615 0.00 0.00 37.61 2.27
1910 2227 7.391833 AGTGTGTTCTGAAATATCCTTTTCTCC 59.608 37.037 0.00 0.00 36.71 3.71
1954 2278 8.741603 AGTTGTAACACTGTTAGTAATTTGGT 57.258 30.769 1.63 0.00 0.00 3.67
1955 2279 9.835389 AGTTGTAACACTGTTAGTAATTTGGTA 57.165 29.630 1.63 0.00 0.00 3.25
1956 2280 9.868389 GTTGTAACACTGTTAGTAATTTGGTAC 57.132 33.333 1.63 8.54 0.00 3.34
1957 2281 9.835389 TTGTAACACTGTTAGTAATTTGGTACT 57.165 29.630 1.63 0.00 37.98 2.73
1958 2282 9.480053 TGTAACACTGTTAGTAATTTGGTACTC 57.520 33.333 1.63 0.00 35.85 2.59
1959 2283 7.974482 AACACTGTTAGTAATTTGGTACTCC 57.026 36.000 0.00 0.00 35.85 3.85
1960 2284 6.470278 ACACTGTTAGTAATTTGGTACTCCC 58.530 40.000 0.00 0.00 35.85 4.30
1961 2285 6.271624 ACACTGTTAGTAATTTGGTACTCCCT 59.728 38.462 0.00 0.00 35.85 4.20
1962 2286 6.817140 CACTGTTAGTAATTTGGTACTCCCTC 59.183 42.308 0.00 0.00 35.85 4.30
1963 2287 6.070366 ACTGTTAGTAATTTGGTACTCCCTCC 60.070 42.308 0.00 0.00 35.85 4.30
1964 2288 5.105228 TGTTAGTAATTTGGTACTCCCTCCG 60.105 44.000 0.00 0.00 35.85 4.63
1965 2289 3.447950 AGTAATTTGGTACTCCCTCCGT 58.552 45.455 0.00 0.00 27.56 4.69
1966 2290 3.450096 AGTAATTTGGTACTCCCTCCGTC 59.550 47.826 0.00 0.00 27.56 4.79
1967 2291 1.201424 ATTTGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
1968 2292 1.252904 TTTGGTACTCCCTCCGTCCG 61.253 60.000 0.00 0.00 0.00 4.79
1969 2293 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
1970 2294 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
1971 2295 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1972 2296 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1973 2297 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1974 2298 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1975 2299 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1976 2300 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1977 2301 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1978 2302 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1979 2303 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1980 2304 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1981 2305 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1982 2306 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1983 2307 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1984 2308 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1985 2309 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1986 2310 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1987 2311 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1988 2312 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1989 2313 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1990 2314 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1991 2315 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
1992 2316 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2000 2324 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
2001 2325 9.362539 CTTGTCATCAAAATGAATAAAAGAGGG 57.637 33.333 0.00 0.00 43.42 4.30
2002 2326 8.421249 TGTCATCAAAATGAATAAAAGAGGGT 57.579 30.769 0.00 0.00 43.42 4.34
2003 2327 8.306038 TGTCATCAAAATGAATAAAAGAGGGTG 58.694 33.333 0.00 0.00 43.42 4.61
2004 2328 8.306761 GTCATCAAAATGAATAAAAGAGGGTGT 58.693 33.333 0.00 0.00 43.42 4.16
2005 2329 9.527157 TCATCAAAATGAATAAAAGAGGGTGTA 57.473 29.630 0.00 0.00 38.97 2.90
2008 2332 9.753674 TCAAAATGAATAAAAGAGGGTGTATCT 57.246 29.630 0.00 0.00 0.00 1.98
2013 2337 7.713750 TGAATAAAAGAGGGTGTATCTAGACG 58.286 38.462 0.00 0.00 0.00 4.18
2014 2338 7.341256 TGAATAAAAGAGGGTGTATCTAGACGT 59.659 37.037 0.00 0.00 0.00 4.34
2015 2339 8.757982 AATAAAAGAGGGTGTATCTAGACGTA 57.242 34.615 0.00 0.00 0.00 3.57
2016 2340 8.937207 ATAAAAGAGGGTGTATCTAGACGTAT 57.063 34.615 0.00 0.00 0.00 3.06
2017 2341 7.657023 AAAAGAGGGTGTATCTAGACGTATT 57.343 36.000 0.00 0.00 0.00 1.89
2018 2342 7.657023 AAAGAGGGTGTATCTAGACGTATTT 57.343 36.000 0.00 0.00 0.00 1.40
2019 2343 7.657023 AAGAGGGTGTATCTAGACGTATTTT 57.343 36.000 0.00 0.00 0.00 1.82
2020 2344 8.757982 AAGAGGGTGTATCTAGACGTATTTTA 57.242 34.615 0.00 0.00 0.00 1.52
2021 2345 8.393671 AGAGGGTGTATCTAGACGTATTTTAG 57.606 38.462 0.00 0.00 0.00 1.85
2022 2346 7.997803 AGAGGGTGTATCTAGACGTATTTTAGT 59.002 37.037 0.00 0.00 0.00 2.24
2023 2347 8.530804 AGGGTGTATCTAGACGTATTTTAGTT 57.469 34.615 0.00 0.00 0.00 2.24
2024 2348 8.628280 AGGGTGTATCTAGACGTATTTTAGTTC 58.372 37.037 0.00 0.00 0.00 3.01
2025 2349 7.589221 GGGTGTATCTAGACGTATTTTAGTTCG 59.411 40.741 0.00 0.00 0.00 3.95
2026 2350 8.338259 GGTGTATCTAGACGTATTTTAGTTCGA 58.662 37.037 0.00 0.00 0.00 3.71
2027 2351 9.367717 GTGTATCTAGACGTATTTTAGTTCGAG 57.632 37.037 0.00 0.00 0.00 4.04
2028 2352 9.317936 TGTATCTAGACGTATTTTAGTTCGAGA 57.682 33.333 0.00 0.00 0.00 4.04
2032 2356 9.317936 TCTAGACGTATTTTAGTTCGAGATACA 57.682 33.333 0.00 0.00 0.00 2.29
2035 2359 8.618677 AGACGTATTTTAGTTCGAGATACATCA 58.381 33.333 0.00 0.00 0.00 3.07
2036 2360 8.557869 ACGTATTTTAGTTCGAGATACATCAC 57.442 34.615 0.00 0.00 0.00 3.06
2037 2361 7.646922 ACGTATTTTAGTTCGAGATACATCACC 59.353 37.037 0.00 0.00 0.00 4.02
2038 2362 7.861372 CGTATTTTAGTTCGAGATACATCACCT 59.139 37.037 0.00 0.00 0.00 4.00
2039 2363 9.530633 GTATTTTAGTTCGAGATACATCACCTT 57.469 33.333 0.00 0.00 0.00 3.50
2041 2365 8.842358 TTTTAGTTCGAGATACATCACCTTTT 57.158 30.769 0.00 0.00 0.00 2.27
2042 2366 9.932207 TTTTAGTTCGAGATACATCACCTTTTA 57.068 29.630 0.00 0.00 0.00 1.52
2044 2368 9.745880 TTAGTTCGAGATACATCACCTTTTATC 57.254 33.333 0.00 0.00 0.00 1.75
2045 2369 7.210873 AGTTCGAGATACATCACCTTTTATCC 58.789 38.462 0.00 0.00 0.00 2.59
2046 2370 6.724893 TCGAGATACATCACCTTTTATCCA 57.275 37.500 0.00 0.00 0.00 3.41
2047 2371 7.303182 TCGAGATACATCACCTTTTATCCAT 57.697 36.000 0.00 0.00 0.00 3.41
2048 2372 7.735917 TCGAGATACATCACCTTTTATCCATT 58.264 34.615 0.00 0.00 0.00 3.16
2049 2373 8.210946 TCGAGATACATCACCTTTTATCCATTT 58.789 33.333 0.00 0.00 0.00 2.32
2050 2374 8.840321 CGAGATACATCACCTTTTATCCATTTT 58.160 33.333 0.00 0.00 0.00 1.82
2051 2375 9.956720 GAGATACATCACCTTTTATCCATTTTG 57.043 33.333 0.00 0.00 0.00 2.44
2052 2376 9.699410 AGATACATCACCTTTTATCCATTTTGA 57.301 29.630 0.00 0.00 0.00 2.69
2055 2379 8.365060 ACATCACCTTTTATCCATTTTGATGA 57.635 30.769 13.63 0.00 40.95 2.92
2056 2380 8.253113 ACATCACCTTTTATCCATTTTGATGAC 58.747 33.333 13.63 0.00 40.95 3.06
2057 2381 7.773489 TCACCTTTTATCCATTTTGATGACA 57.227 32.000 0.00 0.00 0.00 3.58
2058 2382 8.187913 TCACCTTTTATCCATTTTGATGACAA 57.812 30.769 0.00 0.00 0.00 3.18
2059 2383 8.306038 TCACCTTTTATCCATTTTGATGACAAG 58.694 33.333 0.00 0.00 37.32 3.16
2060 2384 8.090214 CACCTTTTATCCATTTTGATGACAAGT 58.910 33.333 0.00 0.00 37.32 3.16
2061 2385 9.308000 ACCTTTTATCCATTTTGATGACAAGTA 57.692 29.630 0.00 0.00 37.32 2.24
2067 2391 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2068 2392 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2069 2393 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2070 2394 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2071 2395 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2072 2396 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2073 2397 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2074 2398 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2075 2399 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2076 2400 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2077 2401 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2107 2460 3.181466 GGATTGTCCTGTTTGTGCCTTTT 60.181 43.478 0.00 0.00 32.53 2.27
2116 2469 2.929398 GTTTGTGCCTTTTGTCCAGTTG 59.071 45.455 0.00 0.00 0.00 3.16
2119 2472 2.622942 TGTGCCTTTTGTCCAGTTGATC 59.377 45.455 0.00 0.00 0.00 2.92
2123 2476 5.009610 GTGCCTTTTGTCCAGTTGATCTTAA 59.990 40.000 0.00 0.00 0.00 1.85
2124 2477 5.596361 TGCCTTTTGTCCAGTTGATCTTAAA 59.404 36.000 0.00 0.00 0.00 1.52
2125 2478 6.152379 GCCTTTTGTCCAGTTGATCTTAAAG 58.848 40.000 0.00 0.00 0.00 1.85
2127 2480 7.141363 CCTTTTGTCCAGTTGATCTTAAAGTG 58.859 38.462 0.00 0.00 0.00 3.16
2130 2483 6.861065 TGTCCAGTTGATCTTAAAGTGAAC 57.139 37.500 0.00 0.00 30.88 3.18
2131 2484 6.353323 TGTCCAGTTGATCTTAAAGTGAACA 58.647 36.000 0.00 0.00 30.88 3.18
2132 2485 6.998074 TGTCCAGTTGATCTTAAAGTGAACAT 59.002 34.615 0.00 0.00 30.88 2.71
2133 2486 7.041167 TGTCCAGTTGATCTTAAAGTGAACATG 60.041 37.037 0.00 0.00 30.88 3.21
2136 2489 7.011773 CAGTTGATCTTAAAGTGAACATGACG 58.988 38.462 0.00 0.00 30.88 4.35
2137 2490 6.706270 AGTTGATCTTAAAGTGAACATGACGT 59.294 34.615 0.00 0.00 0.00 4.34
2140 2493 8.596271 TGATCTTAAAGTGAACATGACGTAAA 57.404 30.769 0.00 0.00 0.00 2.01
2228 2581 5.297776 ACAGCACTATAATGATCTTGTTGCC 59.702 40.000 0.00 0.00 0.00 4.52
2269 2622 5.590259 GCAATTGGTAGACAACACCTGATAT 59.410 40.000 7.72 0.00 42.94 1.63
2300 2653 6.055588 TGTTTCGTCTCAATCTTCCTTCTTT 58.944 36.000 0.00 0.00 0.00 2.52
2327 2680 9.014297 ACTAAAATCCACATTGAAGAACTTAGG 57.986 33.333 0.00 0.00 0.00 2.69
2351 2704 1.138036 CATGTGGTGCTTGGATGCG 59.862 57.895 0.00 0.00 35.36 4.73
2407 2762 7.883311 AGTGCAGTATTCTAATGTTTAGGTGTT 59.117 33.333 0.00 0.00 0.00 3.32
2408 2763 9.158233 GTGCAGTATTCTAATGTTTAGGTGTTA 57.842 33.333 0.00 0.00 0.00 2.41
2423 2778 7.622502 TTAGGTGTTAATATTCCTCCCTACC 57.377 40.000 0.00 0.00 0.00 3.18
2437 2792 4.277476 CTCCCTACCATGCATTTTAACCA 58.723 43.478 0.00 0.00 0.00 3.67
2467 2822 6.402222 TGTGCCATTTTAATTGGTATGTTCC 58.598 36.000 7.57 0.00 0.00 3.62
2472 2827 7.279981 GCCATTTTAATTGGTATGTTCCCTTTC 59.720 37.037 7.57 0.00 0.00 2.62
2620 2975 6.647334 TCCTCATTTTCTATTTGCACACAA 57.353 33.333 0.00 0.00 0.00 3.33
2621 2976 6.446318 TCCTCATTTTCTATTTGCACACAAC 58.554 36.000 0.00 0.00 34.87 3.32
2622 2977 6.265196 TCCTCATTTTCTATTTGCACACAACT 59.735 34.615 0.00 0.00 34.87 3.16
2634 2989 6.530019 TTGCACACAACTCTCTCTATATGA 57.470 37.500 0.00 0.00 0.00 2.15
2682 3037 3.170991 AGTCTGCTCCAGTACCACTAA 57.829 47.619 0.00 0.00 32.61 2.24
2703 3058 8.550376 CACTAATTTTTGCATTACTTGTTTGCT 58.450 29.630 0.00 0.00 37.28 3.91
2704 3059 9.757227 ACTAATTTTTGCATTACTTGTTTGCTA 57.243 25.926 0.00 1.22 37.28 3.49
2706 3061 8.661352 AATTTTTGCATTACTTGTTTGCTACT 57.339 26.923 0.00 0.00 37.28 2.57
2707 3062 7.692908 TTTTTGCATTACTTGTTTGCTACTC 57.307 32.000 0.00 0.00 37.28 2.59
2708 3063 5.371115 TTGCATTACTTGTTTGCTACTCC 57.629 39.130 0.00 0.00 37.28 3.85
2709 3064 3.756434 TGCATTACTTGTTTGCTACTCCC 59.244 43.478 8.90 0.00 37.28 4.30
2710 3065 4.010349 GCATTACTTGTTTGCTACTCCCT 58.990 43.478 0.00 0.00 33.61 4.20
2711 3066 4.095036 GCATTACTTGTTTGCTACTCCCTC 59.905 45.833 0.00 0.00 33.61 4.30
2712 3067 5.491982 CATTACTTGTTTGCTACTCCCTCT 58.508 41.667 0.00 0.00 0.00 3.69
2713 3068 3.409026 ACTTGTTTGCTACTCCCTCTG 57.591 47.619 0.00 0.00 0.00 3.35
2714 3069 2.706190 ACTTGTTTGCTACTCCCTCTGT 59.294 45.455 0.00 0.00 0.00 3.41
2715 3070 3.901844 ACTTGTTTGCTACTCCCTCTGTA 59.098 43.478 0.00 0.00 0.00 2.74
2716 3071 4.347000 ACTTGTTTGCTACTCCCTCTGTAA 59.653 41.667 0.00 0.00 0.00 2.41
2717 3072 4.967084 TGTTTGCTACTCCCTCTGTAAA 57.033 40.909 0.00 0.00 0.00 2.01
2718 3073 4.638304 TGTTTGCTACTCCCTCTGTAAAC 58.362 43.478 0.00 0.00 36.22 2.01
2719 3074 4.347000 TGTTTGCTACTCCCTCTGTAAACT 59.653 41.667 0.00 0.00 36.48 2.66
2720 3075 5.541101 TGTTTGCTACTCCCTCTGTAAACTA 59.459 40.000 0.00 0.00 36.48 2.24
2721 3076 5.916661 TTGCTACTCCCTCTGTAAACTAG 57.083 43.478 0.00 0.00 0.00 2.57
2722 3077 4.931914 TGCTACTCCCTCTGTAAACTAGT 58.068 43.478 0.00 0.00 0.00 2.57
2723 3078 6.070951 TGCTACTCCCTCTGTAAACTAGTA 57.929 41.667 0.00 0.00 0.00 1.82
2724 3079 6.670617 TGCTACTCCCTCTGTAAACTAGTAT 58.329 40.000 0.00 0.00 0.00 2.12
2725 3080 7.809238 TGCTACTCCCTCTGTAAACTAGTATA 58.191 38.462 0.00 0.00 0.00 1.47
2726 3081 8.277197 TGCTACTCCCTCTGTAAACTAGTATAA 58.723 37.037 0.00 0.00 0.00 0.98
2727 3082 8.785946 GCTACTCCCTCTGTAAACTAGTATAAG 58.214 40.741 0.00 0.00 0.00 1.73
2729 3084 8.983702 ACTCCCTCTGTAAACTAGTATAAGAG 57.016 38.462 13.80 13.80 0.00 2.85
2730 3085 7.503230 ACTCCCTCTGTAAACTAGTATAAGAGC 59.497 40.741 14.73 0.00 0.00 4.09
2731 3086 7.351952 TCCCTCTGTAAACTAGTATAAGAGCA 58.648 38.462 14.73 5.54 0.00 4.26
2732 3087 8.005388 TCCCTCTGTAAACTAGTATAAGAGCAT 58.995 37.037 14.73 0.00 0.00 3.79
2733 3088 8.643324 CCCTCTGTAAACTAGTATAAGAGCATT 58.357 37.037 14.73 0.00 0.00 3.56
2780 3135 7.725818 AAACGCTCTTATATTAGTTTAGGGC 57.274 36.000 0.00 0.00 31.14 5.19
2835 3215 6.907212 CACTTTTGTTAACATGTGAGACTGAC 59.093 38.462 21.87 0.00 0.00 3.51
2880 3260 4.819769 AGTGCATGTTTGTTCAGTTTTGT 58.180 34.783 0.00 0.00 0.00 2.83
2889 3269 6.209788 TGTTTGTTCAGTTTTGTACTTTCCCT 59.790 34.615 0.00 0.00 33.85 4.20
2900 3306 2.943036 ACTTTCCCTGAAACCGCTTA 57.057 45.000 0.00 0.00 0.00 3.09
2922 3328 7.066284 GCTTACTGTCCATTATTGATCTGTTGT 59.934 37.037 0.00 0.00 0.00 3.32
2923 3329 6.748333 ACTGTCCATTATTGATCTGTTGTG 57.252 37.500 0.00 0.00 0.00 3.33
2935 3341 5.820131 TGATCTGTTGTGTGTTTTGATGTC 58.180 37.500 0.00 0.00 0.00 3.06
2936 3342 5.356470 TGATCTGTTGTGTGTTTTGATGTCA 59.644 36.000 0.00 0.00 0.00 3.58
3370 3779 7.725844 ACCTTGTCCAGATTTATCTTCTTTTGT 59.274 33.333 0.00 0.00 34.22 2.83
3489 3898 0.805711 GCTGCAAAACGTGTTGGCTT 60.806 50.000 19.82 0.00 0.00 4.35
3490 3899 0.922717 CTGCAAAACGTGTTGGCTTG 59.077 50.000 19.82 6.40 0.00 4.01
3515 3924 5.299279 GCATATTAGCTTTGCCCTAAGTCAA 59.701 40.000 0.00 0.00 0.00 3.18
3590 3999 9.742144 AGTATCGATTAGATATTGTACTCCACT 57.258 33.333 1.71 0.00 43.13 4.00
3593 4002 8.563123 TCGATTAGATATTGTACTCCACTAGG 57.437 38.462 0.00 0.00 0.00 3.02
3594 4003 8.162085 TCGATTAGATATTGTACTCCACTAGGT 58.838 37.037 0.00 0.00 35.89 3.08
3595 4004 9.445878 CGATTAGATATTGTACTCCACTAGGTA 57.554 37.037 0.00 0.00 35.89 3.08
3599 4008 8.338072 AGATATTGTACTCCACTAGGTAATCG 57.662 38.462 0.00 0.00 35.89 3.34
3603 4012 7.886629 TTGTACTCCACTAGGTAATCGTAAT 57.113 36.000 0.00 0.00 35.89 1.89
3604 4013 7.886629 TGTACTCCACTAGGTAATCGTAATT 57.113 36.000 0.00 0.00 35.89 1.40
3605 4014 8.297470 TGTACTCCACTAGGTAATCGTAATTT 57.703 34.615 0.00 0.00 35.89 1.82
3644 4056 8.575565 TTTCTAACAGCTAATATGCGAAGTAG 57.424 34.615 0.00 0.00 38.13 2.57
3669 4081 8.646900 AGATGAAAACAGAGGGAGTATAATCTC 58.353 37.037 0.00 0.00 0.00 2.75
3670 4082 6.806751 TGAAAACAGAGGGAGTATAATCTCG 58.193 40.000 0.00 0.00 35.52 4.04
3671 4083 6.380274 TGAAAACAGAGGGAGTATAATCTCGT 59.620 38.462 0.00 0.00 35.52 4.18
3672 4084 7.558807 TGAAAACAGAGGGAGTATAATCTCGTA 59.441 37.037 0.00 0.00 35.52 3.43
3673 4085 7.513371 AAACAGAGGGAGTATAATCTCGTAG 57.487 40.000 0.00 0.00 35.52 3.51
3674 4086 5.005094 ACAGAGGGAGTATAATCTCGTAGC 58.995 45.833 0.00 0.00 35.52 3.58
3675 4087 4.396790 CAGAGGGAGTATAATCTCGTAGCC 59.603 50.000 0.00 0.00 35.52 3.93
3676 4088 4.043059 AGAGGGAGTATAATCTCGTAGCCA 59.957 45.833 0.00 0.00 35.52 4.75
3680 4092 5.393243 GGGAGTATAATCTCGTAGCCATGAC 60.393 48.000 0.00 0.00 35.52 3.06
3681 4093 5.183331 GGAGTATAATCTCGTAGCCATGACA 59.817 44.000 0.00 0.00 35.52 3.58
3685 4208 3.827008 ATCTCGTAGCCATGACATTGT 57.173 42.857 0.00 0.00 0.00 2.71
3762 4289 8.520351 GCTTATTGTAGGTAGGTGTTTGAAAAT 58.480 33.333 0.00 0.00 0.00 1.82
3774 4301 6.989759 AGGTGTTTGAAAATTAAATCGGCTTT 59.010 30.769 0.00 0.00 0.00 3.51
3784 4311 9.435688 AAAATTAAATCGGCTTTTGCTTAATCT 57.564 25.926 0.00 0.00 46.54 2.40
3807 4337 1.607148 AGTGCTTAAGTGGAAAACGGC 59.393 47.619 4.02 0.00 0.00 5.68
3811 4341 3.251487 TGCTTAAGTGGAAAACGGCTTAC 59.749 43.478 4.02 0.00 0.00 2.34
3812 4342 3.501062 GCTTAAGTGGAAAACGGCTTACT 59.499 43.478 4.02 0.00 0.00 2.24
3813 4343 4.023450 GCTTAAGTGGAAAACGGCTTACTT 60.023 41.667 4.02 0.00 33.46 2.24
3814 4344 5.678132 TTAAGTGGAAAACGGCTTACTTC 57.322 39.130 0.00 0.00 31.55 3.01
3815 4345 3.487120 AGTGGAAAACGGCTTACTTCT 57.513 42.857 0.00 0.00 0.00 2.85
3816 4346 3.400255 AGTGGAAAACGGCTTACTTCTC 58.600 45.455 0.00 0.00 0.00 2.87
3817 4347 3.071167 AGTGGAAAACGGCTTACTTCTCT 59.929 43.478 0.00 0.00 0.00 3.10
3818 4348 4.282703 AGTGGAAAACGGCTTACTTCTCTA 59.717 41.667 0.00 0.00 0.00 2.43
3819 4349 4.992951 GTGGAAAACGGCTTACTTCTCTAA 59.007 41.667 0.00 0.00 0.00 2.10
3820 4350 5.120363 GTGGAAAACGGCTTACTTCTCTAAG 59.880 44.000 0.00 0.00 38.77 2.18
3821 4351 4.093115 GGAAAACGGCTTACTTCTCTAAGC 59.907 45.833 2.85 2.85 45.46 3.09
3829 4359 5.534407 GCTTACTTCTCTAAGCACCTATCC 58.466 45.833 6.14 0.00 45.49 2.59
3830 4360 5.764131 CTTACTTCTCTAAGCACCTATCCG 58.236 45.833 0.00 0.00 36.05 4.18
3831 4361 3.633418 ACTTCTCTAAGCACCTATCCGT 58.367 45.455 0.00 0.00 36.05 4.69
3832 4362 4.024670 ACTTCTCTAAGCACCTATCCGTT 58.975 43.478 0.00 0.00 36.05 4.44
3833 4363 4.142138 ACTTCTCTAAGCACCTATCCGTTG 60.142 45.833 0.00 0.00 36.05 4.10
3834 4364 3.628008 TCTCTAAGCACCTATCCGTTGA 58.372 45.455 0.00 0.00 0.00 3.18
3835 4365 4.215908 TCTCTAAGCACCTATCCGTTGAT 58.784 43.478 0.00 0.00 34.87 2.57
3836 4366 5.382616 TCTCTAAGCACCTATCCGTTGATA 58.617 41.667 0.00 0.00 32.18 2.15
3837 4367 5.831525 TCTCTAAGCACCTATCCGTTGATAA 59.168 40.000 0.00 0.00 33.13 1.75
3838 4368 6.322969 TCTCTAAGCACCTATCCGTTGATAAA 59.677 38.462 0.00 0.00 33.13 1.40
3839 4369 6.880484 TCTAAGCACCTATCCGTTGATAAAA 58.120 36.000 0.00 0.00 33.13 1.52
3840 4370 7.332557 TCTAAGCACCTATCCGTTGATAAAAA 58.667 34.615 0.00 0.00 33.13 1.94
3867 4397 4.161565 TCACATATAGAAACTGAAGCCGGT 59.838 41.667 1.90 0.00 0.00 5.28
3869 4399 6.041637 TCACATATAGAAACTGAAGCCGGTAT 59.958 38.462 1.90 0.00 0.00 2.73
3870 4400 6.146184 CACATATAGAAACTGAAGCCGGTATG 59.854 42.308 1.90 0.66 0.00 2.39
3875 4432 1.153289 CTGAAGCCGGTATGCAGCT 60.153 57.895 1.90 0.00 38.88 4.24
3909 4466 0.892755 ACCGCCACTCGAAATACTGA 59.107 50.000 0.00 0.00 41.67 3.41
3913 4470 1.929836 GCCACTCGAAATACTGAGCTG 59.070 52.381 0.00 0.00 35.61 4.24
3914 4471 2.417379 GCCACTCGAAATACTGAGCTGA 60.417 50.000 0.00 0.00 35.61 4.26
3916 4473 3.119316 CCACTCGAAATACTGAGCTGAGT 60.119 47.826 11.55 11.55 35.61 3.41
3922 4493 1.607801 ATACTGAGCTGAGTGGCGCA 61.608 55.000 16.78 0.00 39.49 6.09
3955 4526 0.672711 GCCTTACCTTGTCACGTCCC 60.673 60.000 0.00 0.00 0.00 4.46
3957 4528 1.005867 TTACCTTGTCACGTCCCGC 60.006 57.895 0.00 0.00 0.00 6.13
3959 4530 4.308458 CCTTGTCACGTCCCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
3960 4531 2.047274 CTTGTCACGTCCCGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
3999 4570 4.999939 GGCAAAACGGCCGTGCTG 63.000 66.667 34.95 30.29 45.40 4.41
4022 4593 3.103911 CACGTCGCCGTCCAGTTC 61.104 66.667 0.00 0.00 46.28 3.01
4023 4594 3.598715 ACGTCGCCGTCCAGTTCA 61.599 61.111 0.00 0.00 46.28 3.18
4025 4596 2.028484 GTCGCCGTCCAGTTCACA 59.972 61.111 0.00 0.00 0.00 3.58
4028 4599 2.110213 GCCGTCCAGTTCACACCA 59.890 61.111 0.00 0.00 0.00 4.17
4029 4600 2.251642 GCCGTCCAGTTCACACCAC 61.252 63.158 0.00 0.00 0.00 4.16
4030 4601 1.145156 CCGTCCAGTTCACACCACA 59.855 57.895 0.00 0.00 0.00 4.17
4031 4602 1.157870 CCGTCCAGTTCACACCACAC 61.158 60.000 0.00 0.00 0.00 3.82
4032 4603 0.179084 CGTCCAGTTCACACCACACT 60.179 55.000 0.00 0.00 0.00 3.55
4033 4604 1.067974 CGTCCAGTTCACACCACACTA 59.932 52.381 0.00 0.00 0.00 2.74
4059 4630 0.798776 CAGGCCTAAAACGACAGCAG 59.201 55.000 3.98 0.00 0.00 4.24
4060 4631 0.321653 AGGCCTAAAACGACAGCAGG 60.322 55.000 1.29 0.00 0.00 4.85
4061 4632 0.321298 GGCCTAAAACGACAGCAGGA 60.321 55.000 0.00 0.00 0.00 3.86
4062 4633 1.679032 GGCCTAAAACGACAGCAGGAT 60.679 52.381 0.00 0.00 0.00 3.24
4063 4634 1.666189 GCCTAAAACGACAGCAGGATC 59.334 52.381 0.00 0.00 0.00 3.36
4064 4635 2.280628 CCTAAAACGACAGCAGGATCC 58.719 52.381 2.48 2.48 0.00 3.36
4065 4636 2.354704 CCTAAAACGACAGCAGGATCCA 60.355 50.000 15.82 0.00 0.00 3.41
4066 4637 1.523758 AAAACGACAGCAGGATCCAC 58.476 50.000 15.82 5.51 0.00 4.02
4067 4638 0.396435 AAACGACAGCAGGATCCACA 59.604 50.000 15.82 0.00 0.00 4.17
4068 4639 0.036952 AACGACAGCAGGATCCACAG 60.037 55.000 15.82 5.06 0.00 3.66
4069 4640 1.188219 ACGACAGCAGGATCCACAGT 61.188 55.000 15.82 8.56 0.00 3.55
4070 4641 0.036952 CGACAGCAGGATCCACAGTT 60.037 55.000 15.82 0.00 0.00 3.16
4071 4642 1.446907 GACAGCAGGATCCACAGTTG 58.553 55.000 15.82 13.51 0.00 3.16
4072 4643 1.002430 GACAGCAGGATCCACAGTTGA 59.998 52.381 15.82 0.00 0.00 3.18
4073 4644 1.271054 ACAGCAGGATCCACAGTTGAC 60.271 52.381 15.82 0.00 0.00 3.18
4074 4645 1.059098 AGCAGGATCCACAGTTGACA 58.941 50.000 15.82 0.00 0.00 3.58
4075 4646 1.160137 GCAGGATCCACAGTTGACAC 58.840 55.000 15.82 0.00 0.00 3.67
4076 4647 1.813513 CAGGATCCACAGTTGACACC 58.186 55.000 15.82 0.00 0.00 4.16
4077 4648 1.072173 CAGGATCCACAGTTGACACCA 59.928 52.381 15.82 0.00 0.00 4.17
4078 4649 1.774254 AGGATCCACAGTTGACACCAA 59.226 47.619 15.82 0.00 0.00 3.67
4079 4650 2.174639 AGGATCCACAGTTGACACCAAA 59.825 45.455 15.82 0.00 33.49 3.28
4080 4651 2.293399 GGATCCACAGTTGACACCAAAC 59.707 50.000 6.95 0.00 33.49 2.93
4081 4652 2.799126 TCCACAGTTGACACCAAACT 57.201 45.000 0.00 0.00 33.49 2.66
4082 4653 3.916359 TCCACAGTTGACACCAAACTA 57.084 42.857 0.00 0.00 33.49 2.24
4083 4654 4.223556 TCCACAGTTGACACCAAACTAA 57.776 40.909 0.00 0.00 33.49 2.24
4084 4655 4.787551 TCCACAGTTGACACCAAACTAAT 58.212 39.130 0.00 0.00 33.49 1.73
4085 4656 5.197451 TCCACAGTTGACACCAAACTAATT 58.803 37.500 0.00 0.00 33.49 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
398 410 1.971695 CTCCCGGCTGACAAAACCC 60.972 63.158 0.00 0.00 0.00 4.11
442 454 4.150627 CGAACACAATCGAGTCAAATCACT 59.849 41.667 0.00 0.00 45.48 3.41
526 554 0.167033 AATTTTACGCACGCATCGCA 59.833 45.000 0.00 0.00 0.00 5.10
536 564 5.705902 ACACAGGACCAAATAATTTTACGC 58.294 37.500 0.00 0.00 0.00 4.42
553 581 7.653713 ACAAGCGAATAATCTTATCTACACAGG 59.346 37.037 0.00 0.00 0.00 4.00
554 582 8.581057 ACAAGCGAATAATCTTATCTACACAG 57.419 34.615 0.00 0.00 0.00 3.66
558 586 9.851043 GACAAACAAGCGAATAATCTTATCTAC 57.149 33.333 0.00 0.00 0.00 2.59
562 590 6.183360 TGCGACAAACAAGCGAATAATCTTAT 60.183 34.615 0.00 0.00 0.00 1.73
563 591 5.120986 TGCGACAAACAAGCGAATAATCTTA 59.879 36.000 0.00 0.00 0.00 2.10
701 729 3.558674 CACTGGTGTGGAATCCTCC 57.441 57.895 0.00 1.43 42.81 4.30
744 772 4.018960 AGCCCAGCTTATGAGAGAAGAAAA 60.019 41.667 0.00 0.00 33.89 2.29
772 800 2.418976 GGGATCGAAGTAAACAGCAACC 59.581 50.000 0.00 0.00 0.00 3.77
787 815 2.938956 AGAAGGGCAATAAGGGATCG 57.061 50.000 0.00 0.00 0.00 3.69
805 833 7.815068 GGCCTATGTACTCATGTATTCAGTAAG 59.185 40.741 0.00 0.00 35.70 2.34
858 894 1.071987 CAGTTCAGCCCAGCACAGA 59.928 57.895 0.00 0.00 0.00 3.41
880 916 6.628185 TCGAAAACCTATCAGAAGTAGGAAC 58.372 40.000 4.32 0.00 41.01 3.62
972 1078 4.841246 AGCAACCTAGAAGGAGAGAAAAGA 59.159 41.667 0.00 0.00 37.67 2.52
1089 1197 9.013229 GTTGAATGGCATATAGATGTCCAATTA 57.987 33.333 14.59 4.26 40.40 1.40
1090 1198 7.506599 TGTTGAATGGCATATAGATGTCCAATT 59.493 33.333 14.59 3.13 40.40 2.32
1111 1219 4.038763 AGGTGTGAACGAAGATAGTGTTGA 59.961 41.667 0.00 0.00 0.00 3.18
1304 1413 1.285078 GGTGGCTTGAAGGGGTAATCT 59.715 52.381 0.00 0.00 0.00 2.40
1359 1468 4.012374 AGAGCACACATAATGAGGGTTTG 58.988 43.478 0.00 0.00 0.00 2.93
1456 1574 4.078639 ACCATTGCTGTTCTATCTAGCC 57.921 45.455 0.00 0.00 36.64 3.93
1723 1934 5.303845 GGAGTAAATGTTACGACCCCTCTAT 59.696 44.000 0.00 0.00 0.00 1.98
1774 2090 5.014858 AGTGGACATTGAGAAAAGCATCAT 58.985 37.500 0.00 0.00 0.00 2.45
1864 2181 5.362717 ACACTGCATACCATGTTAGCTACTA 59.637 40.000 0.00 0.00 0.00 1.82
1865 2182 4.162320 ACACTGCATACCATGTTAGCTACT 59.838 41.667 0.00 0.00 0.00 2.57
1866 2183 4.271049 CACACTGCATACCATGTTAGCTAC 59.729 45.833 0.00 0.00 0.00 3.58
1905 2222 2.044793 AAGACCACATCCAGGGAGAA 57.955 50.000 0.00 0.00 0.00 2.87
1906 2223 1.909302 GAAAGACCACATCCAGGGAGA 59.091 52.381 0.00 0.00 0.00 3.71
1910 2227 3.490348 ACTTTGAAAGACCACATCCAGG 58.510 45.455 12.53 0.00 0.00 4.45
1953 2277 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1954 2278 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1955 2279 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1956 2280 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1957 2281 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1958 2282 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1959 2283 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1960 2284 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1961 2285 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1962 2286 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1963 2287 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1964 2288 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1965 2289 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
1966 2290 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
1967 2291 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
1974 2298 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
1975 2299 9.362539 CCCTCTTTTATTCATTTTGATGACAAG 57.637 33.333 0.00 0.00 37.32 3.16
1976 2300 8.869109 ACCCTCTTTTATTCATTTTGATGACAA 58.131 29.630 0.00 0.00 0.00 3.18
1977 2301 8.306038 CACCCTCTTTTATTCATTTTGATGACA 58.694 33.333 0.00 0.00 0.00 3.58
1978 2302 8.306761 ACACCCTCTTTTATTCATTTTGATGAC 58.693 33.333 0.00 0.00 0.00 3.06
1979 2303 8.421249 ACACCCTCTTTTATTCATTTTGATGA 57.579 30.769 0.00 0.00 0.00 2.92
1982 2306 9.753674 AGATACACCCTCTTTTATTCATTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
1987 2311 8.361139 CGTCTAGATACACCCTCTTTTATTCAT 58.639 37.037 0.00 0.00 0.00 2.57
1988 2312 7.341256 ACGTCTAGATACACCCTCTTTTATTCA 59.659 37.037 0.00 0.00 0.00 2.57
1989 2313 7.714703 ACGTCTAGATACACCCTCTTTTATTC 58.285 38.462 0.00 0.00 0.00 1.75
1990 2314 7.657023 ACGTCTAGATACACCCTCTTTTATT 57.343 36.000 0.00 0.00 0.00 1.40
1991 2315 8.937207 ATACGTCTAGATACACCCTCTTTTAT 57.063 34.615 0.00 0.00 0.00 1.40
1992 2316 8.757982 AATACGTCTAGATACACCCTCTTTTA 57.242 34.615 0.00 0.00 0.00 1.52
1993 2317 7.657023 AATACGTCTAGATACACCCTCTTTT 57.343 36.000 0.00 0.00 0.00 2.27
1994 2318 7.657023 AAATACGTCTAGATACACCCTCTTT 57.343 36.000 0.00 0.00 0.00 2.52
1995 2319 7.657023 AAAATACGTCTAGATACACCCTCTT 57.343 36.000 0.00 0.00 0.00 2.85
1996 2320 7.997803 ACTAAAATACGTCTAGATACACCCTCT 59.002 37.037 0.00 0.00 0.00 3.69
1997 2321 8.164058 ACTAAAATACGTCTAGATACACCCTC 57.836 38.462 0.00 0.00 0.00 4.30
1998 2322 8.530804 AACTAAAATACGTCTAGATACACCCT 57.469 34.615 0.00 0.00 0.00 4.34
1999 2323 7.589221 CGAACTAAAATACGTCTAGATACACCC 59.411 40.741 0.00 0.00 0.00 4.61
2000 2324 8.338259 TCGAACTAAAATACGTCTAGATACACC 58.662 37.037 0.00 0.00 0.00 4.16
2001 2325 9.367717 CTCGAACTAAAATACGTCTAGATACAC 57.632 37.037 0.00 0.00 0.00 2.90
2002 2326 9.317936 TCTCGAACTAAAATACGTCTAGATACA 57.682 33.333 0.00 0.00 0.00 2.29
2006 2330 9.317936 TGTATCTCGAACTAAAATACGTCTAGA 57.682 33.333 0.00 0.00 0.00 2.43
2009 2333 8.618677 TGATGTATCTCGAACTAAAATACGTCT 58.381 33.333 0.00 0.00 38.64 4.18
2010 2334 8.680261 GTGATGTATCTCGAACTAAAATACGTC 58.320 37.037 0.00 0.00 38.46 4.34
2011 2335 7.646922 GGTGATGTATCTCGAACTAAAATACGT 59.353 37.037 0.00 0.00 0.00 3.57
2012 2336 7.861372 AGGTGATGTATCTCGAACTAAAATACG 59.139 37.037 0.00 0.00 0.00 3.06
2013 2337 9.530633 AAGGTGATGTATCTCGAACTAAAATAC 57.469 33.333 0.00 0.00 0.00 1.89
2015 2339 9.449719 AAAAGGTGATGTATCTCGAACTAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
2016 2340 8.842358 AAAAGGTGATGTATCTCGAACTAAAA 57.158 30.769 0.00 0.00 0.00 1.52
2018 2342 9.745880 GATAAAAGGTGATGTATCTCGAACTAA 57.254 33.333 0.00 0.00 0.00 2.24
2019 2343 8.358148 GGATAAAAGGTGATGTATCTCGAACTA 58.642 37.037 0.00 0.00 0.00 2.24
2020 2344 7.147724 TGGATAAAAGGTGATGTATCTCGAACT 60.148 37.037 0.00 0.00 0.00 3.01
2021 2345 6.984474 TGGATAAAAGGTGATGTATCTCGAAC 59.016 38.462 0.00 0.00 0.00 3.95
2022 2346 7.119709 TGGATAAAAGGTGATGTATCTCGAA 57.880 36.000 0.00 0.00 0.00 3.71
2023 2347 6.724893 TGGATAAAAGGTGATGTATCTCGA 57.275 37.500 0.00 0.00 0.00 4.04
2024 2348 7.969536 AATGGATAAAAGGTGATGTATCTCG 57.030 36.000 0.00 0.00 0.00 4.04
2025 2349 9.956720 CAAAATGGATAAAAGGTGATGTATCTC 57.043 33.333 0.00 0.00 0.00 2.75
2026 2350 9.699410 TCAAAATGGATAAAAGGTGATGTATCT 57.301 29.630 0.00 0.00 0.00 1.98
2029 2353 9.473007 TCATCAAAATGGATAAAAGGTGATGTA 57.527 29.630 9.42 0.00 41.09 2.29
2030 2354 8.253113 GTCATCAAAATGGATAAAAGGTGATGT 58.747 33.333 9.42 0.00 41.09 3.06
2031 2355 8.252417 TGTCATCAAAATGGATAAAAGGTGATG 58.748 33.333 0.00 0.00 41.46 3.07
2032 2356 8.365060 TGTCATCAAAATGGATAAAAGGTGAT 57.635 30.769 0.00 0.00 33.42 3.06
2033 2357 7.773489 TGTCATCAAAATGGATAAAAGGTGA 57.227 32.000 0.00 0.00 33.42 4.02
2034 2358 8.090214 ACTTGTCATCAAAATGGATAAAAGGTG 58.910 33.333 0.00 0.00 33.42 4.00
2035 2359 8.193953 ACTTGTCATCAAAATGGATAAAAGGT 57.806 30.769 0.00 0.00 33.42 3.50
2042 2366 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2043 2367 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2044 2368 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2045 2369 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2046 2370 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2047 2371 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2048 2372 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2049 2373 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2050 2374 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2051 2375 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2052 2376 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2053 2377 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2054 2378 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2055 2379 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2056 2380 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2057 2381 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2058 2382 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2059 2383 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2060 2384 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2061 2385 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2062 2386 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2063 2387 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
2064 2388 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
2065 2389 2.238144 CCTATATACTCCCTCCGTCCGA 59.762 54.545 0.00 0.00 0.00 4.55
2066 2390 2.238144 TCCTATATACTCCCTCCGTCCG 59.762 54.545 0.00 0.00 0.00 4.79
2067 2391 4.523168 ATCCTATATACTCCCTCCGTCC 57.477 50.000 0.00 0.00 0.00 4.79
2068 2392 5.262804 ACAATCCTATATACTCCCTCCGTC 58.737 45.833 0.00 0.00 0.00 4.79
2069 2393 5.262804 GACAATCCTATATACTCCCTCCGT 58.737 45.833 0.00 0.00 0.00 4.69
2070 2394 4.645588 GGACAATCCTATATACTCCCTCCG 59.354 50.000 0.00 0.00 32.53 4.63
2102 2455 7.013274 TCACTTTAAGATCAACTGGACAAAAGG 59.987 37.037 0.00 0.00 0.00 3.11
2107 2460 6.353323 TGTTCACTTTAAGATCAACTGGACA 58.647 36.000 0.00 0.00 0.00 4.02
2116 2469 8.492748 TGTTTACGTCATGTTCACTTTAAGATC 58.507 33.333 0.00 0.00 0.00 2.75
2119 2472 7.627340 AGTGTTTACGTCATGTTCACTTTAAG 58.373 34.615 0.00 0.00 34.54 1.85
2123 2476 6.431198 AAAGTGTTTACGTCATGTTCACTT 57.569 33.333 0.00 3.61 42.13 3.16
2124 2477 6.092944 TGAAAAGTGTTTACGTCATGTTCACT 59.907 34.615 0.00 0.00 37.38 3.41
2125 2478 6.252281 TGAAAAGTGTTTACGTCATGTTCAC 58.748 36.000 0.00 0.00 0.00 3.18
2127 2480 6.483687 ACTGAAAAGTGTTTACGTCATGTTC 58.516 36.000 0.00 0.00 0.00 3.18
2130 2483 7.483375 TGAAAACTGAAAAGTGTTTACGTCATG 59.517 33.333 0.00 0.00 35.63 3.07
2131 2484 7.531716 TGAAAACTGAAAAGTGTTTACGTCAT 58.468 30.769 0.00 0.00 35.63 3.06
2132 2485 6.900189 TGAAAACTGAAAAGTGTTTACGTCA 58.100 32.000 0.00 0.00 35.63 4.35
2133 2486 7.694784 TCATGAAAACTGAAAAGTGTTTACGTC 59.305 33.333 0.00 0.00 35.63 4.34
2136 2489 7.973944 ACCTCATGAAAACTGAAAAGTGTTTAC 59.026 33.333 0.00 0.00 35.63 2.01
2137 2490 7.973388 CACCTCATGAAAACTGAAAAGTGTTTA 59.027 33.333 0.00 0.00 35.63 2.01
2140 2493 5.163519 CCACCTCATGAAAACTGAAAAGTGT 60.164 40.000 0.00 0.00 0.00 3.55
2189 2542 5.362556 AGTGCTGTCATAAACAACATCAC 57.637 39.130 2.24 2.24 36.42 3.06
2248 2601 8.650143 AAAAATATCAGGTGTTGTCTACCAAT 57.350 30.769 0.00 0.00 40.74 3.16
2342 2695 3.837213 AGAACAAATGACGCATCCAAG 57.163 42.857 0.00 0.00 0.00 3.61
2407 2762 6.718593 AATGCATGGTAGGGAGGAATATTA 57.281 37.500 0.00 0.00 0.00 0.98
2408 2763 5.605540 AATGCATGGTAGGGAGGAATATT 57.394 39.130 0.00 0.00 0.00 1.28
2648 3003 6.008331 TGGAGCAGACTTCTACAAGTAACTA 58.992 40.000 0.00 0.00 43.37 2.24
2652 3007 4.408276 ACTGGAGCAGACTTCTACAAGTA 58.592 43.478 0.00 0.00 43.37 2.24
2682 3037 7.384932 GGAGTAGCAAACAAGTAATGCAAAAAT 59.615 33.333 11.76 0.00 42.45 1.82
2704 3059 7.503230 GCTCTTATACTAGTTTACAGAGGGAGT 59.497 40.741 20.49 0.00 0.00 3.85
2705 3060 7.502895 TGCTCTTATACTAGTTTACAGAGGGAG 59.497 40.741 20.49 11.41 0.00 4.30
2706 3061 7.351952 TGCTCTTATACTAGTTTACAGAGGGA 58.648 38.462 20.49 10.01 0.00 4.20
2707 3062 7.584122 TGCTCTTATACTAGTTTACAGAGGG 57.416 40.000 20.49 8.93 0.00 4.30
2754 3109 8.923683 GCCCTAAACTAATATAAGAGCGTTTAG 58.076 37.037 10.95 10.95 41.25 1.85
2755 3110 7.596248 CGCCCTAAACTAATATAAGAGCGTTTA 59.404 37.037 0.00 0.00 34.42 2.01
2756 3111 6.423001 CGCCCTAAACTAATATAAGAGCGTTT 59.577 38.462 0.00 0.00 34.42 3.60
2757 3112 5.924825 CGCCCTAAACTAATATAAGAGCGTT 59.075 40.000 0.00 0.00 34.42 4.84
2758 3113 5.010415 ACGCCCTAAACTAATATAAGAGCGT 59.990 40.000 0.00 0.00 45.98 5.07
2759 3114 5.467705 ACGCCCTAAACTAATATAAGAGCG 58.532 41.667 0.00 0.00 43.85 5.03
2760 3115 7.373493 TGTACGCCCTAAACTAATATAAGAGC 58.627 38.462 0.00 0.00 0.00 4.09
2761 3116 9.355215 CATGTACGCCCTAAACTAATATAAGAG 57.645 37.037 0.00 0.00 0.00 2.85
2762 3117 7.816031 GCATGTACGCCCTAAACTAATATAAGA 59.184 37.037 0.00 0.00 0.00 2.10
2763 3118 7.817962 AGCATGTACGCCCTAAACTAATATAAG 59.182 37.037 0.00 0.00 0.00 1.73
2764 3119 7.673180 AGCATGTACGCCCTAAACTAATATAA 58.327 34.615 0.00 0.00 0.00 0.98
2765 3120 7.235935 AGCATGTACGCCCTAAACTAATATA 57.764 36.000 0.00 0.00 0.00 0.86
2766 3121 6.110411 AGCATGTACGCCCTAAACTAATAT 57.890 37.500 0.00 0.00 0.00 1.28
2767 3122 5.540400 AGCATGTACGCCCTAAACTAATA 57.460 39.130 0.00 0.00 0.00 0.98
2768 3123 4.417426 AGCATGTACGCCCTAAACTAAT 57.583 40.909 0.00 0.00 0.00 1.73
2769 3124 3.899052 AGCATGTACGCCCTAAACTAA 57.101 42.857 0.00 0.00 0.00 2.24
2770 3125 4.021719 GGATAGCATGTACGCCCTAAACTA 60.022 45.833 0.00 0.00 0.00 2.24
2771 3126 3.244112 GGATAGCATGTACGCCCTAAACT 60.244 47.826 0.00 0.00 0.00 2.66
2772 3127 3.064931 GGATAGCATGTACGCCCTAAAC 58.935 50.000 0.00 0.00 0.00 2.01
2773 3128 2.038033 GGGATAGCATGTACGCCCTAAA 59.962 50.000 8.13 0.00 32.78 1.85
2774 3129 1.621814 GGGATAGCATGTACGCCCTAA 59.378 52.381 8.13 0.00 32.78 2.69
2775 3130 1.203137 AGGGATAGCATGTACGCCCTA 60.203 52.381 14.20 0.00 43.83 3.53
2776 3131 0.471971 AGGGATAGCATGTACGCCCT 60.472 55.000 11.15 11.15 40.97 5.19
2777 3132 0.320771 CAGGGATAGCATGTACGCCC 60.321 60.000 7.50 7.50 35.79 6.13
2778 3133 0.951040 GCAGGGATAGCATGTACGCC 60.951 60.000 0.00 0.00 0.00 5.68
2779 3134 0.951040 GGCAGGGATAGCATGTACGC 60.951 60.000 0.00 0.00 0.00 4.42
2780 3135 0.392706 TGGCAGGGATAGCATGTACG 59.607 55.000 0.00 0.00 0.00 3.67
2781 3136 2.867109 ATGGCAGGGATAGCATGTAC 57.133 50.000 0.00 0.00 0.00 2.90
2835 3215 5.841810 TCCTTTTGGCTTATGAACAACTTG 58.158 37.500 0.00 0.00 40.12 3.16
2880 3260 2.943036 AAGCGGTTTCAGGGAAAGTA 57.057 45.000 0.00 0.00 31.87 2.24
2889 3269 2.851263 ATGGACAGTAAGCGGTTTCA 57.149 45.000 4.64 0.00 0.00 2.69
2900 3306 6.149973 CACACAACAGATCAATAATGGACAGT 59.850 38.462 0.00 0.00 0.00 3.55
2922 3328 5.620206 AGACCTGTATGACATCAAAACACA 58.380 37.500 0.00 0.00 0.00 3.72
2923 3329 6.373779 CAAGACCTGTATGACATCAAAACAC 58.626 40.000 0.00 0.00 0.00 3.32
2935 3341 5.301551 ACAGATAGAGAGCAAGACCTGTATG 59.698 44.000 0.00 0.00 32.58 2.39
2936 3342 5.454062 ACAGATAGAGAGCAAGACCTGTAT 58.546 41.667 0.00 0.00 32.58 2.29
3128 3537 5.186797 TCGAAGAAACAATGGCCCATAAATT 59.813 36.000 0.00 0.00 0.00 1.82
3460 3869 0.588252 GTTTTGCAGCGAGCTTCTGA 59.412 50.000 17.78 3.96 45.94 3.27
3569 3978 8.338072 ACCTAGTGGAGTACAATATCTAATCG 57.662 38.462 0.00 0.00 37.04 3.34
3615 4024 9.722056 CTTCGCATATTAGCTGTTAGAAATTTT 57.278 29.630 0.00 0.00 0.00 1.82
3616 4025 8.893727 ACTTCGCATATTAGCTGTTAGAAATTT 58.106 29.630 0.00 0.00 0.00 1.82
3617 4026 8.438676 ACTTCGCATATTAGCTGTTAGAAATT 57.561 30.769 0.00 0.00 0.00 1.82
3619 4028 8.410912 TCTACTTCGCATATTAGCTGTTAGAAA 58.589 33.333 0.00 0.00 0.00 2.52
3623 4032 7.882179 TCATCTACTTCGCATATTAGCTGTTA 58.118 34.615 0.00 0.00 0.00 2.41
3625 4034 6.332735 TCATCTACTTCGCATATTAGCTGT 57.667 37.500 0.00 0.00 0.00 4.40
3626 4035 7.643528 TTTCATCTACTTCGCATATTAGCTG 57.356 36.000 0.00 0.00 0.00 4.24
3638 4050 6.043854 ACTCCCTCTGTTTTCATCTACTTC 57.956 41.667 0.00 0.00 0.00 3.01
3644 4056 7.596995 CGAGATTATACTCCCTCTGTTTTCATC 59.403 40.741 0.00 0.00 33.83 2.92
3669 4081 3.261580 TCTCAACAATGTCATGGCTACG 58.738 45.455 0.00 0.00 0.00 3.51
3670 4082 5.627499 TTTCTCAACAATGTCATGGCTAC 57.373 39.130 0.00 0.00 0.00 3.58
3671 4083 5.065090 CGATTTCTCAACAATGTCATGGCTA 59.935 40.000 0.00 0.00 0.00 3.93
3672 4084 4.142534 CGATTTCTCAACAATGTCATGGCT 60.143 41.667 0.00 0.00 0.00 4.75
3673 4085 4.100529 CGATTTCTCAACAATGTCATGGC 58.899 43.478 0.00 0.00 0.00 4.40
3674 4086 4.100529 GCGATTTCTCAACAATGTCATGG 58.899 43.478 0.00 0.00 0.00 3.66
3675 4087 4.725359 TGCGATTTCTCAACAATGTCATG 58.275 39.130 0.00 0.00 0.00 3.07
3676 4088 5.375417 TTGCGATTTCTCAACAATGTCAT 57.625 34.783 0.00 0.00 0.00 3.06
3680 4092 3.567530 TGCTTGCGATTTCTCAACAATG 58.432 40.909 0.00 0.00 0.00 2.82
3681 4093 3.829948 CTGCTTGCGATTTCTCAACAAT 58.170 40.909 0.00 0.00 0.00 2.71
3743 4270 9.550811 CGATTTAATTTTCAAACACCTACCTAC 57.449 33.333 0.00 0.00 0.00 3.18
3744 4271 8.732531 CCGATTTAATTTTCAAACACCTACCTA 58.267 33.333 0.00 0.00 0.00 3.08
3762 4289 6.151985 TGGAGATTAAGCAAAAGCCGATTTAA 59.848 34.615 0.00 0.00 0.00 1.52
3774 4301 5.412594 CACTTAAGCACTGGAGATTAAGCAA 59.587 40.000 15.34 0.00 38.30 3.91
3784 4311 2.875933 CGTTTTCCACTTAAGCACTGGA 59.124 45.455 8.80 8.80 31.94 3.86
3807 4337 5.299782 ACGGATAGGTGCTTAGAGAAGTAAG 59.700 44.000 0.00 0.00 34.90 2.34
3811 4341 4.098044 TCAACGGATAGGTGCTTAGAGAAG 59.902 45.833 0.00 0.00 37.50 2.85
3812 4342 4.021229 TCAACGGATAGGTGCTTAGAGAA 58.979 43.478 0.00 0.00 37.50 2.87
3813 4343 3.628008 TCAACGGATAGGTGCTTAGAGA 58.372 45.455 0.00 0.00 37.50 3.10
3814 4344 4.592485 ATCAACGGATAGGTGCTTAGAG 57.408 45.455 0.00 0.00 37.50 2.43
3815 4345 6.474140 TTTATCAACGGATAGGTGCTTAGA 57.526 37.500 0.00 0.00 37.31 2.10
3816 4346 7.548196 TTTTTATCAACGGATAGGTGCTTAG 57.452 36.000 0.00 0.00 37.31 2.18
3838 4368 9.860898 GGCTTCAGTTTCTATATGTGAATTTTT 57.139 29.630 0.00 0.00 0.00 1.94
3839 4369 8.184192 CGGCTTCAGTTTCTATATGTGAATTTT 58.816 33.333 0.00 0.00 0.00 1.82
3840 4370 7.201732 CCGGCTTCAGTTTCTATATGTGAATTT 60.202 37.037 0.00 0.00 0.00 1.82
3841 4371 6.260936 CCGGCTTCAGTTTCTATATGTGAATT 59.739 38.462 0.00 0.00 0.00 2.17
3842 4372 5.760253 CCGGCTTCAGTTTCTATATGTGAAT 59.240 40.000 0.00 0.00 0.00 2.57
3843 4373 5.116180 CCGGCTTCAGTTTCTATATGTGAA 58.884 41.667 0.00 0.00 0.00 3.18
3844 4374 4.161565 ACCGGCTTCAGTTTCTATATGTGA 59.838 41.667 0.00 0.00 0.00 3.58
3845 4375 4.442706 ACCGGCTTCAGTTTCTATATGTG 58.557 43.478 0.00 0.00 0.00 3.21
3846 4376 4.755266 ACCGGCTTCAGTTTCTATATGT 57.245 40.909 0.00 0.00 0.00 2.29
3853 4383 1.398390 CTGCATACCGGCTTCAGTTTC 59.602 52.381 0.00 0.00 34.04 2.78
3867 4397 1.693152 CCTCCTGGCTCAGCTGCATA 61.693 60.000 9.47 0.00 34.04 3.14
3869 4399 3.714001 CCTCCTGGCTCAGCTGCA 61.714 66.667 9.47 0.00 34.04 4.41
3870 4400 4.486503 CCCTCCTGGCTCAGCTGC 62.487 72.222 9.47 0.00 0.00 5.25
3898 4455 2.417379 GCCACTCAGCTCAGTATTTCGA 60.417 50.000 0.00 0.00 0.00 3.71
3909 4466 4.631247 TGCTTGCGCCACTCAGCT 62.631 61.111 4.18 0.00 34.43 4.24
3955 4526 2.126618 CAGCACAGCACAATGGCG 60.127 61.111 0.00 0.00 39.27 5.69
3957 4528 1.372499 GCACAGCACAGCACAATGG 60.372 57.895 0.00 0.00 0.00 3.16
3959 4530 1.658114 CAGCACAGCACAGCACAAT 59.342 52.632 0.00 0.00 0.00 2.71
3960 4531 3.112842 CAGCACAGCACAGCACAA 58.887 55.556 0.00 0.00 0.00 3.33
4009 4580 2.028484 GTGTGAACTGGACGGCGA 59.972 61.111 16.62 0.00 0.00 5.54
4022 4593 2.095768 CCTGCGAAATTAGTGTGGTGTG 60.096 50.000 0.00 0.00 0.00 3.82
4023 4594 2.151202 CCTGCGAAATTAGTGTGGTGT 58.849 47.619 0.00 0.00 0.00 4.16
4025 4596 1.165270 GCCTGCGAAATTAGTGTGGT 58.835 50.000 0.00 0.00 0.00 4.16
4028 4599 3.343941 TTAGGCCTGCGAAATTAGTGT 57.656 42.857 17.99 0.00 0.00 3.55
4029 4600 4.412207 GTTTTAGGCCTGCGAAATTAGTG 58.588 43.478 17.99 0.00 0.00 2.74
4030 4601 3.126343 CGTTTTAGGCCTGCGAAATTAGT 59.874 43.478 17.99 0.00 0.00 2.24
4031 4602 3.372822 TCGTTTTAGGCCTGCGAAATTAG 59.627 43.478 17.99 9.43 0.00 1.73
4032 4603 3.125658 GTCGTTTTAGGCCTGCGAAATTA 59.874 43.478 17.99 3.77 33.30 1.40
4033 4604 2.095415 GTCGTTTTAGGCCTGCGAAATT 60.095 45.455 17.99 0.00 33.30 1.82
4059 4630 2.270352 TTGGTGTCAACTGTGGATCC 57.730 50.000 4.20 4.20 0.00 3.36
4060 4631 3.214328 AGTTTGGTGTCAACTGTGGATC 58.786 45.455 0.00 0.00 31.78 3.36
4061 4632 3.297134 AGTTTGGTGTCAACTGTGGAT 57.703 42.857 0.00 0.00 31.78 3.41
4062 4633 2.799126 AGTTTGGTGTCAACTGTGGA 57.201 45.000 0.00 0.00 31.78 4.02
4063 4634 5.514274 AATTAGTTTGGTGTCAACTGTGG 57.486 39.130 0.00 0.00 31.78 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.