Multiple sequence alignment - TraesCS1B01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G311200 chr1B 100.000 2827 0 0 2501 5327 534664404 534667230 0.000000e+00 5221
1 TraesCS1B01G311200 chr1B 100.000 2200 0 0 1 2200 534661904 534664103 0.000000e+00 4063
2 TraesCS1B01G311200 chr1A 94.376 2027 87 9 3303 5327 495702216 495704217 0.000000e+00 3086
3 TraesCS1B01G311200 chr1A 94.105 1425 51 10 784 2197 495699389 495700791 0.000000e+00 2135
4 TraesCS1B01G311200 chr1A 86.636 434 28 11 190 602 495697384 495697808 2.260000e-123 453
5 TraesCS1B01G311200 chr1A 86.719 384 37 8 2555 2933 495701475 495701849 1.070000e-111 414
6 TraesCS1B01G311200 chr1A 86.957 276 25 4 3028 3303 495702034 495702298 3.120000e-77 300
7 TraesCS1B01G311200 chr1A 91.346 104 8 1 3346 3449 554300620 554300722 2.000000e-29 141
8 TraesCS1B01G311200 chr1D 95.813 1839 67 5 3498 5327 398975700 398977537 0.000000e+00 2961
9 TraesCS1B01G311200 chr1D 94.568 1933 72 12 270 2185 398971965 398973881 0.000000e+00 2957
10 TraesCS1B01G311200 chr1D 83.871 279 23 17 3303 3568 398975379 398975648 4.120000e-61 246
11 TraesCS1B01G311200 chr3B 95.833 96 3 1 3350 3445 821733016 821733110 2.570000e-33 154
12 TraesCS1B01G311200 chr3B 93.814 97 5 1 3348 3444 829292357 829292262 1.550000e-30 145
13 TraesCS1B01G311200 chr3D 94.737 95 3 2 3349 3441 610153025 610153119 4.300000e-31 147
14 TraesCS1B01G311200 chr3D 92.157 102 6 2 3346 3445 610110515 610110616 5.560000e-30 143
15 TraesCS1B01G311200 chr7A 93.069 101 4 3 3358 3457 209593021 209592923 1.550000e-30 145
16 TraesCS1B01G311200 chr2B 89.815 108 8 2 3334 3441 497799879 497799983 9.310000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G311200 chr1B 534661904 534667230 5326 False 4642.000000 5221 100.000000 1 5327 2 chr1B.!!$F1 5326
1 TraesCS1B01G311200 chr1A 495697384 495704217 6833 False 1277.600000 3086 89.758600 190 5327 5 chr1A.!!$F2 5137
2 TraesCS1B01G311200 chr1D 398971965 398977537 5572 False 2054.666667 2961 91.417333 270 5327 3 chr1D.!!$F1 5057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.033011 TAGGCTCAGGAGTCAGGGTC 60.033 60.0 3.47 0.0 34.98 4.46 F
822 2410 0.389948 GCCCGATATAACTCGCTGGG 60.390 60.0 0.00 0.0 37.33 4.45 F
1886 3481 0.676151 CTCAAGAAGGTGAGCCTGCC 60.676 60.0 0.00 0.0 46.33 4.85 F
3149 5377 0.039618 TGGTTGGAAGGATTGCCTCC 59.960 55.0 0.00 0.0 46.28 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 3481 1.499056 CTAGCGTTGCTTGCACCAG 59.501 57.895 0.00 0.0 40.44 4.00 R
2553 4649 0.114560 TGTCTTTCTCCTCCTCGGGT 59.885 55.000 0.00 0.0 0.00 5.28 R
3383 5613 0.463116 AACGCGAAGGTCACAGGTTT 60.463 50.000 15.93 0.0 0.00 3.27 R
4732 7097 0.038744 AACCTGATGTTCCTGCCTGG 59.961 55.000 0.00 0.0 28.45 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.783090 TGTCATTCTAAGATGCTTCTTCATC 57.217 36.000 17.37 0.00 41.36 2.92
25 26 7.333323 TGTCATTCTAAGATGCTTCTTCATCA 58.667 34.615 17.37 0.78 43.94 3.07
26 27 7.991460 TGTCATTCTAAGATGCTTCTTCATCAT 59.009 33.333 17.37 4.72 43.94 2.45
27 28 8.838365 GTCATTCTAAGATGCTTCTTCATCATT 58.162 33.333 17.37 0.00 43.94 2.57
28 29 9.404848 TCATTCTAAGATGCTTCTTCATCATTT 57.595 29.630 17.37 0.00 43.94 2.32
29 30 9.452065 CATTCTAAGATGCTTCTTCATCATTTG 57.548 33.333 17.37 5.48 43.94 2.32
30 31 7.024340 TCTAAGATGCTTCTTCATCATTTGC 57.976 36.000 17.37 0.00 43.94 3.68
31 32 5.654603 AAGATGCTTCTTCATCATTTGCA 57.345 34.783 8.97 0.00 43.94 4.08
32 33 5.854010 AGATGCTTCTTCATCATTTGCAT 57.146 34.783 6.53 0.00 43.94 3.96
33 34 6.222038 AGATGCTTCTTCATCATTTGCATT 57.778 33.333 6.53 0.00 43.94 3.56
34 35 6.273825 AGATGCTTCTTCATCATTTGCATTC 58.726 36.000 6.53 0.00 43.94 2.67
35 36 5.394224 TGCTTCTTCATCATTTGCATTCA 57.606 34.783 0.00 0.00 0.00 2.57
36 37 5.407502 TGCTTCTTCATCATTTGCATTCAG 58.592 37.500 0.00 0.00 0.00 3.02
37 38 5.184287 TGCTTCTTCATCATTTGCATTCAGA 59.816 36.000 0.00 0.00 0.00 3.27
38 39 5.744345 GCTTCTTCATCATTTGCATTCAGAG 59.256 40.000 0.00 0.00 0.00 3.35
39 40 6.404403 GCTTCTTCATCATTTGCATTCAGAGA 60.404 38.462 0.00 0.00 0.00 3.10
40 41 6.679327 TCTTCATCATTTGCATTCAGAGAG 57.321 37.500 0.00 0.00 0.00 3.20
41 42 4.895224 TCATCATTTGCATTCAGAGAGC 57.105 40.909 0.00 0.00 0.00 4.09
42 43 3.630769 TCATCATTTGCATTCAGAGAGCC 59.369 43.478 0.00 0.00 0.00 4.70
43 44 3.076079 TCATTTGCATTCAGAGAGCCA 57.924 42.857 0.00 0.00 0.00 4.75
44 45 3.423749 TCATTTGCATTCAGAGAGCCAA 58.576 40.909 0.00 0.00 0.00 4.52
45 46 3.442625 TCATTTGCATTCAGAGAGCCAAG 59.557 43.478 0.00 0.00 0.00 3.61
46 47 2.574006 TTGCATTCAGAGAGCCAAGT 57.426 45.000 0.00 0.00 0.00 3.16
47 48 2.105006 TGCATTCAGAGAGCCAAGTC 57.895 50.000 0.00 0.00 0.00 3.01
48 49 1.348696 TGCATTCAGAGAGCCAAGTCA 59.651 47.619 0.00 0.00 0.00 3.41
49 50 2.008329 GCATTCAGAGAGCCAAGTCAG 58.992 52.381 0.00 0.00 0.00 3.51
50 51 2.354503 GCATTCAGAGAGCCAAGTCAGA 60.355 50.000 0.00 0.00 0.00 3.27
51 52 3.867600 GCATTCAGAGAGCCAAGTCAGAA 60.868 47.826 0.00 0.00 0.00 3.02
52 53 3.393089 TTCAGAGAGCCAAGTCAGAAC 57.607 47.619 0.00 0.00 0.00 3.01
53 54 2.603021 TCAGAGAGCCAAGTCAGAACT 58.397 47.619 0.00 0.00 37.32 3.01
54 55 3.767711 TCAGAGAGCCAAGTCAGAACTA 58.232 45.455 0.00 0.00 33.48 2.24
55 56 4.348486 TCAGAGAGCCAAGTCAGAACTAT 58.652 43.478 0.00 0.00 33.48 2.12
56 57 5.510430 TCAGAGAGCCAAGTCAGAACTATA 58.490 41.667 0.00 0.00 33.48 1.31
57 58 6.132658 TCAGAGAGCCAAGTCAGAACTATAT 58.867 40.000 0.00 0.00 33.48 0.86
58 59 7.290813 TCAGAGAGCCAAGTCAGAACTATATA 58.709 38.462 0.00 0.00 33.48 0.86
59 60 7.780271 TCAGAGAGCCAAGTCAGAACTATATAA 59.220 37.037 0.00 0.00 33.48 0.98
60 61 8.584157 CAGAGAGCCAAGTCAGAACTATATAAT 58.416 37.037 0.00 0.00 33.48 1.28
61 62 8.802267 AGAGAGCCAAGTCAGAACTATATAATC 58.198 37.037 0.00 0.00 33.48 1.75
62 63 7.902087 AGAGCCAAGTCAGAACTATATAATCC 58.098 38.462 0.00 0.00 33.48 3.01
63 64 7.010339 AGCCAAGTCAGAACTATATAATCCC 57.990 40.000 0.00 0.00 33.48 3.85
64 65 5.869888 GCCAAGTCAGAACTATATAATCCCG 59.130 44.000 0.00 0.00 33.48 5.14
65 66 6.295123 GCCAAGTCAGAACTATATAATCCCGA 60.295 42.308 0.00 0.00 33.48 5.14
66 67 7.667557 CCAAGTCAGAACTATATAATCCCGAA 58.332 38.462 0.00 0.00 33.48 4.30
67 68 8.314751 CCAAGTCAGAACTATATAATCCCGAAT 58.685 37.037 0.00 0.00 33.48 3.34
68 69 9.144747 CAAGTCAGAACTATATAATCCCGAATG 57.855 37.037 0.00 0.00 33.48 2.67
69 70 7.324178 AGTCAGAACTATATAATCCCGAATGC 58.676 38.462 0.00 0.00 32.59 3.56
70 71 7.179338 AGTCAGAACTATATAATCCCGAATGCT 59.821 37.037 0.00 0.00 32.59 3.79
71 72 7.819900 GTCAGAACTATATAATCCCGAATGCTT 59.180 37.037 0.00 0.00 0.00 3.91
72 73 8.375506 TCAGAACTATATAATCCCGAATGCTTT 58.624 33.333 0.00 0.00 0.00 3.51
73 74 9.003658 CAGAACTATATAATCCCGAATGCTTTT 57.996 33.333 0.00 0.00 0.00 2.27
77 78 9.436957 ACTATATAATCCCGAATGCTTTTACTG 57.563 33.333 0.00 0.00 0.00 2.74
78 79 9.653287 CTATATAATCCCGAATGCTTTTACTGA 57.347 33.333 0.00 0.00 0.00 3.41
79 80 6.867662 ATAATCCCGAATGCTTTTACTGAG 57.132 37.500 0.00 0.00 0.00 3.35
80 81 3.973206 TCCCGAATGCTTTTACTGAGA 57.027 42.857 0.00 0.00 0.00 3.27
81 82 3.861840 TCCCGAATGCTTTTACTGAGAG 58.138 45.455 0.00 0.00 0.00 3.20
82 83 2.939103 CCCGAATGCTTTTACTGAGAGG 59.061 50.000 0.00 0.00 0.00 3.69
83 84 2.939103 CCGAATGCTTTTACTGAGAGGG 59.061 50.000 0.00 0.00 0.00 4.30
84 85 3.369471 CCGAATGCTTTTACTGAGAGGGA 60.369 47.826 0.00 0.00 0.00 4.20
85 86 4.253685 CGAATGCTTTTACTGAGAGGGAA 58.746 43.478 0.00 0.00 0.00 3.97
86 87 4.695455 CGAATGCTTTTACTGAGAGGGAAA 59.305 41.667 0.00 0.00 0.00 3.13
87 88 5.181245 CGAATGCTTTTACTGAGAGGGAAAA 59.819 40.000 0.00 0.00 0.00 2.29
88 89 6.293955 CGAATGCTTTTACTGAGAGGGAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
114 115 9.739276 AAAAGAGGATTTATGATGTTGAGTACA 57.261 29.630 0.00 0.00 41.97 2.90
129 130 7.767261 TGTTGAGTACATGGCATTTTATTACC 58.233 34.615 0.00 0.00 0.00 2.85
130 131 6.612247 TGAGTACATGGCATTTTATTACCG 57.388 37.500 0.00 0.00 0.00 4.02
131 132 5.008217 TGAGTACATGGCATTTTATTACCGC 59.992 40.000 0.00 0.00 0.00 5.68
132 133 4.884744 AGTACATGGCATTTTATTACCGCA 59.115 37.500 0.00 0.00 0.00 5.69
133 134 4.040445 ACATGGCATTTTATTACCGCAC 57.960 40.909 0.00 0.00 0.00 5.34
134 135 3.699038 ACATGGCATTTTATTACCGCACT 59.301 39.130 0.00 0.00 0.00 4.40
135 136 4.159506 ACATGGCATTTTATTACCGCACTT 59.840 37.500 0.00 0.00 0.00 3.16
136 137 4.103365 TGGCATTTTATTACCGCACTTG 57.897 40.909 0.00 0.00 0.00 3.16
137 138 3.759086 TGGCATTTTATTACCGCACTTGA 59.241 39.130 0.00 0.00 0.00 3.02
138 139 4.400884 TGGCATTTTATTACCGCACTTGAT 59.599 37.500 0.00 0.00 0.00 2.57
139 140 5.105554 TGGCATTTTATTACCGCACTTGATT 60.106 36.000 0.00 0.00 0.00 2.57
140 141 5.231991 GGCATTTTATTACCGCACTTGATTG 59.768 40.000 0.00 0.00 0.00 2.67
141 142 5.804979 GCATTTTATTACCGCACTTGATTGT 59.195 36.000 0.00 0.00 0.00 2.71
142 143 6.310224 GCATTTTATTACCGCACTTGATTGTT 59.690 34.615 0.00 0.00 0.00 2.83
143 144 7.665471 CATTTTATTACCGCACTTGATTGTTG 58.335 34.615 0.00 0.00 0.00 3.33
144 145 6.561737 TTTATTACCGCACTTGATTGTTGA 57.438 33.333 0.00 0.00 0.00 3.18
145 146 4.685169 ATTACCGCACTTGATTGTTGAG 57.315 40.909 0.00 0.00 0.00 3.02
146 147 2.254546 ACCGCACTTGATTGTTGAGA 57.745 45.000 0.00 0.00 0.00 3.27
147 148 1.873591 ACCGCACTTGATTGTTGAGAC 59.126 47.619 0.00 0.00 0.00 3.36
148 149 1.872952 CCGCACTTGATTGTTGAGACA 59.127 47.619 0.00 0.00 0.00 3.41
149 150 2.485426 CCGCACTTGATTGTTGAGACAT 59.515 45.455 0.00 0.00 35.29 3.06
150 151 3.684305 CCGCACTTGATTGTTGAGACATA 59.316 43.478 0.00 0.00 35.29 2.29
151 152 4.201753 CCGCACTTGATTGTTGAGACATAG 60.202 45.833 0.00 0.00 35.29 2.23
152 153 4.201753 CGCACTTGATTGTTGAGACATAGG 60.202 45.833 0.00 0.00 35.29 2.57
153 154 4.437930 GCACTTGATTGTTGAGACATAGGC 60.438 45.833 0.00 0.00 35.29 3.93
154 155 4.940046 CACTTGATTGTTGAGACATAGGCT 59.060 41.667 0.00 0.00 35.29 4.58
155 156 5.064452 CACTTGATTGTTGAGACATAGGCTC 59.936 44.000 0.00 0.00 35.29 4.70
156 157 4.824479 TGATTGTTGAGACATAGGCTCA 57.176 40.909 0.00 0.00 40.41 4.26
157 158 4.763073 TGATTGTTGAGACATAGGCTCAG 58.237 43.478 2.46 0.00 42.74 3.35
158 159 3.616956 TTGTTGAGACATAGGCTCAGG 57.383 47.619 2.46 0.00 42.74 3.86
159 160 2.820178 TGTTGAGACATAGGCTCAGGA 58.180 47.619 2.46 0.00 42.74 3.86
160 161 2.762887 TGTTGAGACATAGGCTCAGGAG 59.237 50.000 2.46 0.00 42.74 3.69
161 162 2.763448 GTTGAGACATAGGCTCAGGAGT 59.237 50.000 2.46 0.00 42.74 3.85
162 163 2.660572 TGAGACATAGGCTCAGGAGTC 58.339 52.381 0.00 0.00 37.46 3.36
163 164 2.024941 TGAGACATAGGCTCAGGAGTCA 60.025 50.000 3.47 0.00 37.46 3.41
164 165 2.622942 GAGACATAGGCTCAGGAGTCAG 59.377 54.545 3.47 0.00 34.98 3.51
165 166 1.686052 GACATAGGCTCAGGAGTCAGG 59.314 57.143 3.47 0.00 34.98 3.86
166 167 1.047002 CATAGGCTCAGGAGTCAGGG 58.953 60.000 3.47 0.00 34.98 4.45
167 168 0.639392 ATAGGCTCAGGAGTCAGGGT 59.361 55.000 3.47 0.00 34.98 4.34
168 169 0.033011 TAGGCTCAGGAGTCAGGGTC 60.033 60.000 3.47 0.00 34.98 4.46
169 170 1.610673 GGCTCAGGAGTCAGGGTCA 60.611 63.158 0.00 0.00 32.23 4.02
170 171 0.980231 GGCTCAGGAGTCAGGGTCAT 60.980 60.000 0.00 0.00 32.23 3.06
171 172 0.908198 GCTCAGGAGTCAGGGTCATT 59.092 55.000 0.00 0.00 0.00 2.57
172 173 1.134551 GCTCAGGAGTCAGGGTCATTC 60.135 57.143 0.00 0.00 0.00 2.67
173 174 2.182827 CTCAGGAGTCAGGGTCATTCA 58.817 52.381 0.00 0.00 0.00 2.57
174 175 2.770802 CTCAGGAGTCAGGGTCATTCAT 59.229 50.000 0.00 0.00 0.00 2.57
175 176 2.502947 TCAGGAGTCAGGGTCATTCATG 59.497 50.000 0.00 0.00 0.00 3.07
176 177 1.842562 AGGAGTCAGGGTCATTCATGG 59.157 52.381 0.00 0.00 0.00 3.66
177 178 1.839994 GGAGTCAGGGTCATTCATGGA 59.160 52.381 0.00 0.00 0.00 3.41
178 179 2.420687 GGAGTCAGGGTCATTCATGGAC 60.421 54.545 0.00 0.00 34.52 4.02
179 180 2.237143 GAGTCAGGGTCATTCATGGACA 59.763 50.000 0.00 0.00 37.00 4.02
180 181 2.644299 AGTCAGGGTCATTCATGGACAA 59.356 45.455 0.00 0.00 37.00 3.18
181 182 3.074390 AGTCAGGGTCATTCATGGACAAA 59.926 43.478 0.00 0.00 37.00 2.83
182 183 4.019174 GTCAGGGTCATTCATGGACAAAT 58.981 43.478 0.00 0.00 37.00 2.32
183 184 4.463891 GTCAGGGTCATTCATGGACAAATT 59.536 41.667 0.00 0.00 37.00 1.82
184 185 5.047092 GTCAGGGTCATTCATGGACAAATTT 60.047 40.000 0.00 0.00 37.00 1.82
185 186 5.047164 TCAGGGTCATTCATGGACAAATTTG 60.047 40.000 16.67 16.67 37.00 2.32
186 187 5.047164 CAGGGTCATTCATGGACAAATTTGA 60.047 40.000 24.64 2.69 37.00 2.69
187 188 5.047092 AGGGTCATTCATGGACAAATTTGAC 60.047 40.000 24.64 17.82 37.00 3.18
188 189 5.279406 GGGTCATTCATGGACAAATTTGACA 60.279 40.000 24.64 20.66 37.00 3.58
193 194 8.202811 TCATTCATGGACAAATTTGACAGAAAA 58.797 29.630 24.64 15.76 0.00 2.29
198 199 5.526846 TGGACAAATTTGACAGAAAAATGGC 59.473 36.000 24.64 2.79 0.00 4.40
201 202 5.006552 ACAAATTTGACAGAAAAATGGCACG 59.993 36.000 24.64 0.00 38.14 5.34
204 205 3.557577 TGACAGAAAAATGGCACGATG 57.442 42.857 0.00 0.00 31.65 3.84
209 210 4.095483 ACAGAAAAATGGCACGATGAGATC 59.905 41.667 0.00 0.00 0.00 2.75
211 212 3.287867 AAAATGGCACGATGAGATCCT 57.712 42.857 0.00 0.00 0.00 3.24
213 214 4.422073 AAATGGCACGATGAGATCCTAA 57.578 40.909 0.00 0.00 0.00 2.69
218 219 2.541762 GCACGATGAGATCCTAAAGCAC 59.458 50.000 0.00 0.00 0.00 4.40
220 221 2.223829 ACGATGAGATCCTAAAGCACCG 60.224 50.000 0.00 0.00 0.00 4.94
222 223 3.648009 GATGAGATCCTAAAGCACCGAG 58.352 50.000 0.00 0.00 0.00 4.63
252 253 4.276678 CAGAAAATGAAGAACAGGCAGACA 59.723 41.667 0.00 0.00 0.00 3.41
253 254 4.276926 AGAAAATGAAGAACAGGCAGACAC 59.723 41.667 0.00 0.00 0.00 3.67
254 255 2.936919 ATGAAGAACAGGCAGACACA 57.063 45.000 0.00 0.00 0.00 3.72
255 256 1.953559 TGAAGAACAGGCAGACACAC 58.046 50.000 0.00 0.00 0.00 3.82
256 257 1.209261 TGAAGAACAGGCAGACACACA 59.791 47.619 0.00 0.00 0.00 3.72
261 263 1.050988 ACAGGCAGACACACACCTCT 61.051 55.000 0.00 0.00 0.00 3.69
315 333 2.037251 GGGCTTCTCCGTGATAGCATAA 59.963 50.000 0.00 0.00 33.53 1.90
340 358 3.314331 CCTCTATGGCGGGCGGAT 61.314 66.667 0.00 0.00 0.00 4.18
364 382 5.007626 TGGATTTCTGAAACGTGAAGACAAG 59.992 40.000 4.73 0.00 0.00 3.16
377 396 3.716872 TGAAGACAAGGGGAGAAGAAGTT 59.283 43.478 0.00 0.00 0.00 2.66
602 625 8.391075 TGAAAAGTTCAATCCGTTCTTTAGAT 57.609 30.769 0.00 0.00 36.59 1.98
609 632 9.626045 GTTCAATCCGTTCTTTAGATGATTTTT 57.374 29.630 0.00 0.00 0.00 1.94
638 661 1.456165 GAGAAACCTCTTCACGCGTTC 59.544 52.381 10.22 0.28 29.54 3.95
643 666 1.202486 ACCTCTTCACGCGTTCTTCAA 60.202 47.619 10.22 0.00 0.00 2.69
648 671 3.125487 TCTTCACGCGTTCTTCAACAAAA 59.875 39.130 10.22 0.00 32.14 2.44
678 701 6.712998 TCGGAGGAATTTTTACAAAGTCATGA 59.287 34.615 4.41 0.00 38.49 3.07
693 716 3.055530 AGTCATGAGGTGAAACTAGCCAG 60.056 47.826 0.00 0.00 38.90 4.85
706 742 8.296713 GTGAAACTAGCCAGAATCTAGAGATAG 58.703 40.741 0.00 0.00 37.53 2.08
714 750 7.344352 AGCCAGAATCTAGAGATAGTGAAAACT 59.656 37.037 0.00 0.00 33.73 2.66
780 816 2.704725 TGAAAAGTCCAATCGCAAGC 57.295 45.000 0.00 0.00 37.18 4.01
781 817 1.069296 TGAAAAGTCCAATCGCAAGCG 60.069 47.619 8.36 8.36 41.35 4.68
822 2410 0.389948 GCCCGATATAACTCGCTGGG 60.390 60.000 0.00 0.00 37.33 4.45
1248 2843 1.669115 GCTCAAGAGGTCGCTGCAA 60.669 57.895 0.00 0.00 0.00 4.08
1292 2887 2.164663 GCGACGCGTCATCCATTGA 61.165 57.895 35.71 0.00 0.00 2.57
1364 2959 2.202518 CGAAGCGGCCAATGCAAG 60.203 61.111 2.24 0.00 40.13 4.01
1464 3059 2.042843 ATCCCGGACGAGCTCCTT 60.043 61.111 8.47 0.00 36.80 3.36
1857 3452 0.888736 TCGACGACCGGTACAAGGAA 60.889 55.000 7.34 0.00 39.14 3.36
1885 3480 2.851798 CTCAAGAAGGTGAGCCTGC 58.148 57.895 0.00 0.00 46.33 4.85
1886 3481 0.676151 CTCAAGAAGGTGAGCCTGCC 60.676 60.000 0.00 0.00 46.33 4.85
1888 3483 0.959372 CAAGAAGGTGAGCCTGCCTG 60.959 60.000 0.00 0.00 46.33 4.85
1916 3511 2.005960 AACGCTAGCTCGATCGGCTT 62.006 55.000 27.91 16.28 40.74 4.35
1957 3555 1.526917 GGCGAATCTGATGGGTGGG 60.527 63.158 0.00 0.00 0.00 4.61
2154 3753 2.100605 AGTGGCTCGTCTGGAAATTC 57.899 50.000 0.00 0.00 0.00 2.17
2159 3758 1.404315 GCTCGTCTGGAAATTCGAGGT 60.404 52.381 12.25 0.00 46.22 3.85
2160 3759 2.159282 GCTCGTCTGGAAATTCGAGGTA 60.159 50.000 12.25 0.00 46.22 3.08
2161 3760 3.436496 CTCGTCTGGAAATTCGAGGTAC 58.564 50.000 5.21 0.00 43.67 3.34
2166 3765 5.450137 CGTCTGGAAATTCGAGGTACTATGT 60.450 44.000 5.21 0.00 41.55 2.29
2189 3788 9.691362 ATGTTTCTTCATAAATAACGCAAAAGT 57.309 25.926 0.00 0.00 0.00 2.66
2525 4621 4.899239 GCAGATCCCGGCACCTCG 62.899 72.222 0.00 0.00 33.57 4.63
2544 4640 2.421314 GGCACCCACCTTTGCAAC 59.579 61.111 0.00 0.00 40.75 4.17
2548 4644 1.474855 GCACCCACCTTTGCAACAAAT 60.475 47.619 0.00 0.00 38.68 2.32
2549 4645 2.916640 CACCCACCTTTGCAACAAATT 58.083 42.857 0.00 0.00 0.00 1.82
2550 4646 3.742640 GCACCCACCTTTGCAACAAATTA 60.743 43.478 0.00 0.00 38.68 1.40
2552 4648 4.690280 CACCCACCTTTGCAACAAATTATC 59.310 41.667 0.00 0.00 0.00 1.75
2553 4649 4.346418 ACCCACCTTTGCAACAAATTATCA 59.654 37.500 0.00 0.00 0.00 2.15
2572 4685 0.114560 ACCCGAGGAGGAGAAAGACA 59.885 55.000 0.00 0.00 45.00 3.41
2579 4692 4.024809 CGAGGAGGAGAAAGACACAAAAAC 60.025 45.833 0.00 0.00 0.00 2.43
2582 4695 2.357952 AGGAGAAAGACACAAAAACGCC 59.642 45.455 0.00 0.00 0.00 5.68
2584 4697 3.548214 GGAGAAAGACACAAAAACGCCTC 60.548 47.826 0.00 0.00 0.00 4.70
2592 4705 0.377203 CAAAAACGCCTCTATCGCCC 59.623 55.000 0.00 0.00 0.00 6.13
2602 4715 1.740585 CTCTATCGCCCGATCTAGTGG 59.259 57.143 6.43 0.00 36.17 4.00
2620 4734 3.456277 AGTGGATCATAGGTTTCCCTCAC 59.544 47.826 0.00 0.00 41.45 3.51
2646 4760 2.976356 TCGTCGGACGAGGAGAGA 59.024 61.111 27.66 5.44 46.73 3.10
2682 4796 7.701078 CCACATCAAAGCTTTCAAGATATTCTG 59.299 37.037 9.23 1.86 0.00 3.02
2694 4809 2.846206 AGATATTCTGGGGACTTGCACA 59.154 45.455 0.00 0.00 0.00 4.57
2706 4821 0.581529 CTTGCACACATTGTCGTCGT 59.418 50.000 0.00 0.00 0.00 4.34
2775 4890 2.040813 ACCTCATGTTGCCTGAATCACT 59.959 45.455 0.00 0.00 0.00 3.41
2782 4897 2.479566 TGCCTGAATCACTCTTCCAC 57.520 50.000 0.00 0.00 0.00 4.02
2804 4920 3.179830 GAGTGCAATCGTACCACTACAG 58.820 50.000 0.00 0.00 39.72 2.74
2821 4937 1.273048 ACAGCCCATACAAACGACGTA 59.727 47.619 0.00 0.00 0.00 3.57
2845 4961 3.011760 GCTTCGAAAGGTGTCGGCG 62.012 63.158 0.00 0.00 41.43 6.46
2849 4965 2.741211 GAAAGGTGTCGGCGGGTC 60.741 66.667 7.21 0.00 0.00 4.46
2900 5017 4.675029 AAAGACCCACCGCGACCG 62.675 66.667 8.23 0.00 0.00 4.79
2933 5050 1.299976 CCCCCTAAGTGACCACAGC 59.700 63.158 2.78 0.00 0.00 4.40
2934 5051 1.299976 CCCCTAAGTGACCACAGCC 59.700 63.158 2.78 0.00 0.00 4.85
2936 5053 1.488705 CCCTAAGTGACCACAGCCCA 61.489 60.000 2.78 0.00 0.00 5.36
2938 5055 0.396435 CTAAGTGACCACAGCCCACA 59.604 55.000 2.78 0.00 33.53 4.17
2939 5056 0.396435 TAAGTGACCACAGCCCACAG 59.604 55.000 2.78 0.00 33.53 3.66
2940 5057 2.281761 GTGACCACAGCCCACAGG 60.282 66.667 0.00 0.00 0.00 4.00
2941 5058 2.447572 TGACCACAGCCCACAGGA 60.448 61.111 0.00 0.00 33.47 3.86
2942 5059 2.075566 TGACCACAGCCCACAGGAA 61.076 57.895 0.00 0.00 33.47 3.36
2943 5060 1.150536 GACCACAGCCCACAGGAAA 59.849 57.895 0.00 0.00 33.47 3.13
2944 5061 0.251341 GACCACAGCCCACAGGAAAT 60.251 55.000 0.00 0.00 33.47 2.17
2945 5062 0.540365 ACCACAGCCCACAGGAAATG 60.540 55.000 0.00 0.00 33.47 2.32
2946 5063 0.540365 CCACAGCCCACAGGAAATGT 60.540 55.000 0.00 0.00 45.43 2.71
2947 5064 1.271871 CCACAGCCCACAGGAAATGTA 60.272 52.381 0.00 0.00 41.41 2.29
2948 5065 2.086869 CACAGCCCACAGGAAATGTAG 58.913 52.381 0.00 0.00 41.41 2.74
2949 5066 1.705186 ACAGCCCACAGGAAATGTAGT 59.295 47.619 0.00 0.00 41.41 2.73
2950 5067 2.290323 ACAGCCCACAGGAAATGTAGTC 60.290 50.000 0.00 0.00 41.41 2.59
2951 5068 1.282157 AGCCCACAGGAAATGTAGTCC 59.718 52.381 0.00 0.00 41.41 3.85
2952 5069 1.282157 GCCCACAGGAAATGTAGTCCT 59.718 52.381 0.00 0.00 46.92 3.85
2966 5083 4.930696 TGTAGTCCTGATTGTAGTCCTGA 58.069 43.478 0.00 0.00 0.00 3.86
2981 5098 4.473444 AGTCCTGATTGTGTTCACCATTT 58.527 39.130 0.37 0.00 0.00 2.32
2985 5102 4.378770 CCTGATTGTGTTCACCATTTCTCG 60.379 45.833 0.37 0.00 0.00 4.04
2996 5113 2.224769 ACCATTTCTCGTGGACCAACAT 60.225 45.455 0.00 0.00 39.12 2.71
3007 5124 1.644786 GACCAACATAGTGCCGCCAC 61.645 60.000 0.00 0.00 42.39 5.01
3017 5134 4.054825 GCCGCCACCAACCACATG 62.055 66.667 0.00 0.00 0.00 3.21
3019 5136 1.302913 CCGCCACCAACCACATGTA 60.303 57.895 0.00 0.00 0.00 2.29
3020 5137 1.305219 CCGCCACCAACCACATGTAG 61.305 60.000 0.00 0.00 0.00 2.74
3022 5139 1.165270 GCCACCAACCACATGTAGTC 58.835 55.000 0.00 0.00 0.00 2.59
3023 5140 1.821216 CCACCAACCACATGTAGTCC 58.179 55.000 0.00 0.00 0.00 3.85
3024 5141 1.438651 CACCAACCACATGTAGTCCG 58.561 55.000 0.00 0.00 0.00 4.79
3025 5142 1.001520 CACCAACCACATGTAGTCCGA 59.998 52.381 0.00 0.00 0.00 4.55
3026 5143 1.275291 ACCAACCACATGTAGTCCGAG 59.725 52.381 0.00 0.00 0.00 4.63
3027 5144 1.275291 CCAACCACATGTAGTCCGAGT 59.725 52.381 0.00 0.00 0.00 4.18
3028 5145 2.607187 CAACCACATGTAGTCCGAGTC 58.393 52.381 0.00 0.00 0.00 3.36
3029 5146 0.809385 ACCACATGTAGTCCGAGTCG 59.191 55.000 5.29 5.29 0.00 4.18
3030 5147 0.809385 CCACATGTAGTCCGAGTCGT 59.191 55.000 12.31 0.00 0.00 4.34
3032 5149 0.725686 ACATGTAGTCCGAGTCGTCG 59.274 55.000 12.31 0.00 46.39 5.12
3118 5346 8.585471 ATCAGAATTTTGATGAGGTATGTGTT 57.415 30.769 10.50 0.00 36.48 3.32
3148 5376 1.753073 CATGGTTGGAAGGATTGCCTC 59.247 52.381 0.00 0.00 46.28 4.70
3149 5377 0.039618 TGGTTGGAAGGATTGCCTCC 59.960 55.000 0.00 0.00 46.28 4.30
3163 5391 4.454728 TTGCCTCCAGAAAAATACATGC 57.545 40.909 0.00 0.00 0.00 4.06
3177 5405 8.776376 AAAAATACATGCTTGAAAATAGGGTG 57.224 30.769 6.60 0.00 0.00 4.61
3195 5423 2.166664 GGTGAAGCTCCGTGAGTCTTAT 59.833 50.000 0.00 0.00 30.61 1.73
3196 5424 3.380637 GGTGAAGCTCCGTGAGTCTTATA 59.619 47.826 0.00 0.00 30.61 0.98
3197 5425 4.038162 GGTGAAGCTCCGTGAGTCTTATAT 59.962 45.833 0.00 0.00 30.61 0.86
3198 5426 5.241064 GGTGAAGCTCCGTGAGTCTTATATA 59.759 44.000 0.00 0.00 30.61 0.86
3201 5429 6.205076 TGAAGCTCCGTGAGTCTTATATAGTC 59.795 42.308 0.00 0.00 30.61 2.59
3204 5432 7.395617 AGCTCCGTGAGTCTTATATAGTCATA 58.604 38.462 0.00 0.00 31.39 2.15
3238 5466 8.901793 AGAAGATTCTCCATAGAAAGAAAATGC 58.098 33.333 0.00 0.00 44.75 3.56
3239 5467 8.585471 AAGATTCTCCATAGAAAGAAAATGCA 57.415 30.769 0.00 0.00 44.75 3.96
3240 5468 8.585471 AGATTCTCCATAGAAAGAAAATGCAA 57.415 30.769 0.00 0.00 44.75 4.08
3241 5469 9.028284 AGATTCTCCATAGAAAGAAAATGCAAA 57.972 29.630 0.00 0.00 44.75 3.68
3242 5470 9.813446 GATTCTCCATAGAAAGAAAATGCAAAT 57.187 29.630 0.00 0.00 44.75 2.32
3245 5473 8.906867 TCTCCATAGAAAGAAAATGCAAATAGG 58.093 33.333 0.00 0.00 0.00 2.57
3246 5474 8.821686 TCCATAGAAAGAAAATGCAAATAGGA 57.178 30.769 0.00 0.00 0.00 2.94
3247 5475 9.253832 TCCATAGAAAGAAAATGCAAATAGGAA 57.746 29.630 0.00 0.00 0.00 3.36
3248 5476 9.874205 CCATAGAAAGAAAATGCAAATAGGAAA 57.126 29.630 0.00 0.00 0.00 3.13
3295 5523 4.929146 AAAAGTTAGCCCATACAGGTCT 57.071 40.909 0.00 0.00 34.66 3.85
3296 5524 4.929146 AAAGTTAGCCCATACAGGTCTT 57.071 40.909 0.00 0.00 34.66 3.01
3297 5525 3.914426 AGTTAGCCCATACAGGTCTTG 57.086 47.619 0.00 0.00 34.66 3.02
3298 5526 3.450904 AGTTAGCCCATACAGGTCTTGA 58.549 45.455 0.00 0.00 34.66 3.02
3299 5527 3.844211 AGTTAGCCCATACAGGTCTTGAA 59.156 43.478 0.00 0.00 34.66 2.69
3300 5528 2.789409 AGCCCATACAGGTCTTGAAC 57.211 50.000 0.00 0.00 34.66 3.18
3313 5541 5.422214 GGTCTTGAACCTTCTCCATAGAA 57.578 43.478 0.00 0.00 45.45 2.10
3314 5542 5.805728 GGTCTTGAACCTTCTCCATAGAAA 58.194 41.667 0.00 0.00 45.45 2.52
3315 5543 5.877564 GGTCTTGAACCTTCTCCATAGAAAG 59.122 44.000 0.00 0.00 45.45 2.62
3316 5544 6.295916 GGTCTTGAACCTTCTCCATAGAAAGA 60.296 42.308 0.00 0.00 45.45 2.52
3317 5545 7.162082 GTCTTGAACCTTCTCCATAGAAAGAA 58.838 38.462 0.00 0.00 41.19 2.52
3318 5546 7.661847 GTCTTGAACCTTCTCCATAGAAAGAAA 59.338 37.037 0.00 0.00 41.19 2.52
3319 5547 7.880195 TCTTGAACCTTCTCCATAGAAAGAAAG 59.120 37.037 0.00 0.00 41.19 2.62
3320 5548 7.079451 TGAACCTTCTCCATAGAAAGAAAGT 57.921 36.000 0.00 0.00 41.19 2.66
3321 5549 6.936900 TGAACCTTCTCCATAGAAAGAAAGTG 59.063 38.462 0.00 0.00 41.19 3.16
3383 5613 1.595311 ATTGGCCCATACAGGTCTCA 58.405 50.000 0.00 0.00 34.66 3.27
3445 5675 2.158900 GCTGAGCTAATAGGCCTGTTGA 60.159 50.000 23.85 0.00 0.00 3.18
3452 5682 1.486211 ATAGGCCTGTTGAGCTACGT 58.514 50.000 17.99 0.00 0.00 3.57
3465 5696 4.971008 TGAGCTACGTATCGAATAGCATC 58.029 43.478 18.04 13.80 43.13 3.91
3477 5811 9.798885 GTATCGAATAGCATCTTATTGTTGAAC 57.201 33.333 0.00 0.00 0.00 3.18
3499 5833 6.476243 ACGATAAAGTGTACATTGGACAAC 57.524 37.500 2.53 0.00 0.00 3.32
3500 5834 5.992829 ACGATAAAGTGTACATTGGACAACA 59.007 36.000 2.53 0.00 0.00 3.33
3516 5877 4.093952 CACCGCTCGGCTTGCTTG 62.094 66.667 8.41 0.00 39.32 4.01
3542 5903 1.065551 GCAATGGCCGATAAACTCCAC 59.934 52.381 0.00 0.00 0.00 4.02
3568 5929 0.787183 GCGCTCTGACACTTGAACTC 59.213 55.000 0.00 0.00 0.00 3.01
3612 5973 1.301401 GCTGGGCAACTACGTGACA 60.301 57.895 0.00 0.00 0.00 3.58
3616 5977 0.032952 GGGCAACTACGTGACAGACA 59.967 55.000 0.00 0.00 0.00 3.41
4213 6574 1.302285 CTGGCCACCAAGCTCATCT 59.698 57.895 0.00 0.00 30.80 2.90
4278 6639 0.620700 ACCCCTATTTCCTGCTCGGT 60.621 55.000 0.00 0.00 0.00 4.69
4339 6703 7.776969 AGCTCACCAAATAATTGATATGTCTGT 59.223 33.333 0.00 0.00 38.94 3.41
4344 6708 9.911788 ACCAAATAATTGATATGTCTGTCTTCT 57.088 29.630 0.00 0.00 38.94 2.85
4351 6715 6.951256 TGATATGTCTGTCTTCTTTGAACG 57.049 37.500 0.00 0.00 0.00 3.95
4693 7058 0.540454 CTCTTGCTGATGCTCCCAGA 59.460 55.000 0.00 0.00 40.48 3.86
4711 7076 2.046023 CAATGGAGGCCGTGCTCA 60.046 61.111 0.00 0.00 0.00 4.26
4713 7078 0.179048 CAATGGAGGCCGTGCTCATA 60.179 55.000 0.00 0.00 0.00 2.15
4732 7097 5.595885 TCATACTGAAGCTCTATTGACTGC 58.404 41.667 0.00 0.00 0.00 4.40
4781 7146 4.915667 TCGAAAGACTGTTTACTCATGACG 59.084 41.667 0.00 0.00 33.31 4.35
4861 7226 0.820871 ACCAGCTTGTCGATCTCCTC 59.179 55.000 0.00 0.00 0.00 3.71
4989 7357 7.246674 TCGCTCAAAGCTAAATTAGTAATGG 57.753 36.000 1.68 0.00 39.60 3.16
5023 7391 0.881118 TGTGTACCGGTAGTTCGTCC 59.119 55.000 16.41 1.42 0.00 4.79
5065 7433 4.761739 ACAAGATCGGAATGCTTCAAAGAA 59.238 37.500 0.00 0.00 0.00 2.52
5137 7505 3.120121 CGCTGAATTTTACAACAAGCTGC 59.880 43.478 0.00 0.00 0.00 5.25
5153 7521 1.860326 GCTGCGCAGTTGAAAAATGTT 59.140 42.857 35.80 0.00 45.01 2.71
5154 7522 2.347846 GCTGCGCAGTTGAAAAATGTTG 60.348 45.455 35.80 9.19 45.01 3.33
5166 7534 6.798315 TGAAAAATGTTGGCATGGTTAATG 57.202 33.333 0.00 0.00 39.49 1.90
5174 7542 3.924144 TGGCATGGTTAATGAAAACAGC 58.076 40.909 0.00 0.00 38.46 4.40
5209 7577 1.470996 TTGGAAAGCCACATGCACCC 61.471 55.000 0.00 0.00 45.94 4.61
5273 7641 2.989422 ACTGTTTTATTGGCGTCAGC 57.011 45.000 0.00 0.00 44.18 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.333323 TGATGAAGAAGCATCTTAGAATGACA 58.667 34.615 3.79 0.00 45.91 3.58
1 2 7.783090 TGATGAAGAAGCATCTTAGAATGAC 57.217 36.000 3.79 0.00 45.91 3.06
2 3 8.975663 AATGATGAAGAAGCATCTTAGAATGA 57.024 30.769 3.79 0.00 45.91 2.57
3 4 9.452065 CAAATGATGAAGAAGCATCTTAGAATG 57.548 33.333 3.79 0.00 45.91 2.67
4 5 8.136165 GCAAATGATGAAGAAGCATCTTAGAAT 58.864 33.333 3.79 0.00 45.91 2.40
6 7 6.600427 TGCAAATGATGAAGAAGCATCTTAGA 59.400 34.615 3.79 0.00 45.91 2.10
7 8 6.792326 TGCAAATGATGAAGAAGCATCTTAG 58.208 36.000 3.79 0.00 45.91 2.18
8 9 6.762702 TGCAAATGATGAAGAAGCATCTTA 57.237 33.333 3.79 0.00 45.91 2.10
10 11 5.854010 ATGCAAATGATGAAGAAGCATCT 57.146 34.783 0.00 0.00 43.89 2.90
11 12 6.040247 TGAATGCAAATGATGAAGAAGCATC 58.960 36.000 0.00 0.00 43.84 3.91
12 13 5.972935 TGAATGCAAATGATGAAGAAGCAT 58.027 33.333 0.00 0.00 42.40 3.79
13 14 5.184287 TCTGAATGCAAATGATGAAGAAGCA 59.816 36.000 0.00 0.00 34.78 3.91
14 15 5.647589 TCTGAATGCAAATGATGAAGAAGC 58.352 37.500 0.00 0.00 0.00 3.86
15 16 7.085052 TCTCTGAATGCAAATGATGAAGAAG 57.915 36.000 0.00 0.00 0.00 2.85
16 17 6.404403 GCTCTCTGAATGCAAATGATGAAGAA 60.404 38.462 0.00 0.00 0.00 2.52
17 18 5.066117 GCTCTCTGAATGCAAATGATGAAGA 59.934 40.000 0.00 0.00 0.00 2.87
18 19 5.274718 GCTCTCTGAATGCAAATGATGAAG 58.725 41.667 0.00 0.00 0.00 3.02
19 20 4.097437 GGCTCTCTGAATGCAAATGATGAA 59.903 41.667 0.00 0.00 0.00 2.57
20 21 3.630769 GGCTCTCTGAATGCAAATGATGA 59.369 43.478 0.00 0.00 0.00 2.92
21 22 3.380320 TGGCTCTCTGAATGCAAATGATG 59.620 43.478 0.00 0.00 0.00 3.07
22 23 3.628008 TGGCTCTCTGAATGCAAATGAT 58.372 40.909 0.00 0.00 0.00 2.45
23 24 3.076079 TGGCTCTCTGAATGCAAATGA 57.924 42.857 0.00 0.00 0.00 2.57
24 25 3.192844 ACTTGGCTCTCTGAATGCAAATG 59.807 43.478 0.00 0.00 0.00 2.32
25 26 3.428532 ACTTGGCTCTCTGAATGCAAAT 58.571 40.909 0.00 0.00 0.00 2.32
26 27 2.816087 GACTTGGCTCTCTGAATGCAAA 59.184 45.455 0.00 0.00 0.00 3.68
27 28 2.224597 TGACTTGGCTCTCTGAATGCAA 60.225 45.455 0.00 0.00 0.00 4.08
28 29 1.348696 TGACTTGGCTCTCTGAATGCA 59.651 47.619 0.00 0.00 0.00 3.96
29 30 2.008329 CTGACTTGGCTCTCTGAATGC 58.992 52.381 0.00 0.00 0.00 3.56
30 31 3.606595 TCTGACTTGGCTCTCTGAATG 57.393 47.619 0.00 0.00 0.00 2.67
31 32 3.582208 AGTTCTGACTTGGCTCTCTGAAT 59.418 43.478 0.00 0.00 29.87 2.57
32 33 2.968574 AGTTCTGACTTGGCTCTCTGAA 59.031 45.455 0.00 0.00 29.87 3.02
33 34 2.603021 AGTTCTGACTTGGCTCTCTGA 58.397 47.619 0.00 0.00 29.87 3.27
34 35 4.734398 ATAGTTCTGACTTGGCTCTCTG 57.266 45.455 0.00 0.00 37.33 3.35
35 36 8.719645 ATTATATAGTTCTGACTTGGCTCTCT 57.280 34.615 0.00 0.00 37.33 3.10
36 37 8.032451 GGATTATATAGTTCTGACTTGGCTCTC 58.968 40.741 0.00 0.00 37.33 3.20
37 38 7.038658 GGGATTATATAGTTCTGACTTGGCTCT 60.039 40.741 0.00 0.00 37.33 4.09
38 39 7.100409 GGGATTATATAGTTCTGACTTGGCTC 58.900 42.308 0.00 0.00 37.33 4.70
39 40 6.295349 CGGGATTATATAGTTCTGACTTGGCT 60.295 42.308 0.00 0.00 37.33 4.75
40 41 5.869888 CGGGATTATATAGTTCTGACTTGGC 59.130 44.000 0.00 0.00 37.33 4.52
41 42 7.228314 TCGGGATTATATAGTTCTGACTTGG 57.772 40.000 0.00 0.00 37.33 3.61
42 43 9.144747 CATTCGGGATTATATAGTTCTGACTTG 57.855 37.037 0.00 0.00 37.33 3.16
43 44 7.819900 GCATTCGGGATTATATAGTTCTGACTT 59.180 37.037 0.00 0.00 37.33 3.01
44 45 7.179338 AGCATTCGGGATTATATAGTTCTGACT 59.821 37.037 0.00 0.00 39.97 3.41
45 46 7.324178 AGCATTCGGGATTATATAGTTCTGAC 58.676 38.462 0.00 0.00 0.00 3.51
46 47 7.482169 AGCATTCGGGATTATATAGTTCTGA 57.518 36.000 0.00 0.00 0.00 3.27
47 48 8.553459 AAAGCATTCGGGATTATATAGTTCTG 57.447 34.615 0.00 0.00 0.00 3.02
51 52 9.436957 CAGTAAAAGCATTCGGGATTATATAGT 57.563 33.333 0.00 0.00 0.00 2.12
52 53 9.653287 TCAGTAAAAGCATTCGGGATTATATAG 57.347 33.333 0.00 0.00 0.00 1.31
53 54 9.653287 CTCAGTAAAAGCATTCGGGATTATATA 57.347 33.333 0.00 0.00 0.00 0.86
54 55 8.375506 TCTCAGTAAAAGCATTCGGGATTATAT 58.624 33.333 0.00 0.00 0.00 0.86
55 56 7.732025 TCTCAGTAAAAGCATTCGGGATTATA 58.268 34.615 0.00 0.00 0.00 0.98
56 57 6.591935 TCTCAGTAAAAGCATTCGGGATTAT 58.408 36.000 0.00 0.00 0.00 1.28
57 58 5.984725 TCTCAGTAAAAGCATTCGGGATTA 58.015 37.500 0.00 0.00 0.00 1.75
58 59 4.843728 TCTCAGTAAAAGCATTCGGGATT 58.156 39.130 0.00 0.00 0.00 3.01
59 60 4.446371 CTCTCAGTAAAAGCATTCGGGAT 58.554 43.478 0.00 0.00 0.00 3.85
60 61 3.369471 CCTCTCAGTAAAAGCATTCGGGA 60.369 47.826 0.00 0.00 0.00 5.14
61 62 2.939103 CCTCTCAGTAAAAGCATTCGGG 59.061 50.000 0.00 0.00 0.00 5.14
62 63 2.939103 CCCTCTCAGTAAAAGCATTCGG 59.061 50.000 0.00 0.00 0.00 4.30
63 64 3.861840 TCCCTCTCAGTAAAAGCATTCG 58.138 45.455 0.00 0.00 0.00 3.34
64 65 6.575162 TTTTCCCTCTCAGTAAAAGCATTC 57.425 37.500 0.00 0.00 0.00 2.67
65 66 6.976934 TTTTTCCCTCTCAGTAAAAGCATT 57.023 33.333 0.00 0.00 0.00 3.56
88 89 9.739276 TGTACTCAACATCATAAATCCTCTTTT 57.261 29.630 0.00 0.00 31.43 2.27
89 90 9.911788 ATGTACTCAACATCATAAATCCTCTTT 57.088 29.630 0.00 0.00 46.15 2.52
90 91 9.334947 CATGTACTCAACATCATAAATCCTCTT 57.665 33.333 0.00 0.00 46.15 2.85
91 92 7.935755 CCATGTACTCAACATCATAAATCCTCT 59.064 37.037 0.00 0.00 46.15 3.69
92 93 7.308229 GCCATGTACTCAACATCATAAATCCTC 60.308 40.741 0.00 0.00 46.15 3.71
93 94 6.488006 GCCATGTACTCAACATCATAAATCCT 59.512 38.462 0.00 0.00 46.15 3.24
94 95 6.262944 TGCCATGTACTCAACATCATAAATCC 59.737 38.462 0.00 0.00 46.15 3.01
95 96 7.263100 TGCCATGTACTCAACATCATAAATC 57.737 36.000 0.00 0.00 46.15 2.17
96 97 7.828508 ATGCCATGTACTCAACATCATAAAT 57.171 32.000 0.00 0.00 46.15 1.40
97 98 7.643569 AATGCCATGTACTCAACATCATAAA 57.356 32.000 0.00 0.00 46.15 1.40
98 99 7.643569 AAATGCCATGTACTCAACATCATAA 57.356 32.000 0.00 0.00 46.15 1.90
99 100 7.643569 AAAATGCCATGTACTCAACATCATA 57.356 32.000 0.00 0.00 46.15 2.15
100 101 6.534475 AAAATGCCATGTACTCAACATCAT 57.466 33.333 0.00 0.00 46.15 2.45
101 102 5.981088 AAAATGCCATGTACTCAACATCA 57.019 34.783 0.00 0.00 46.15 3.07
102 103 9.450807 GTAATAAAATGCCATGTACTCAACATC 57.549 33.333 0.00 0.00 46.15 3.06
104 105 7.414651 CGGTAATAAAATGCCATGTACTCAACA 60.415 37.037 0.00 0.00 43.86 3.33
105 106 6.910433 CGGTAATAAAATGCCATGTACTCAAC 59.090 38.462 0.00 0.00 0.00 3.18
106 107 6.459024 GCGGTAATAAAATGCCATGTACTCAA 60.459 38.462 0.00 0.00 0.00 3.02
107 108 5.008217 GCGGTAATAAAATGCCATGTACTCA 59.992 40.000 0.00 0.00 0.00 3.41
108 109 5.008217 TGCGGTAATAAAATGCCATGTACTC 59.992 40.000 0.00 0.00 0.00 2.59
109 110 4.884744 TGCGGTAATAAAATGCCATGTACT 59.115 37.500 0.00 0.00 0.00 2.73
110 111 4.973663 GTGCGGTAATAAAATGCCATGTAC 59.026 41.667 0.00 0.00 0.00 2.90
111 112 4.884744 AGTGCGGTAATAAAATGCCATGTA 59.115 37.500 0.00 0.00 0.00 2.29
112 113 3.699038 AGTGCGGTAATAAAATGCCATGT 59.301 39.130 0.00 0.00 0.00 3.21
113 114 4.305989 AGTGCGGTAATAAAATGCCATG 57.694 40.909 0.00 0.00 0.00 3.66
114 115 4.400884 TCAAGTGCGGTAATAAAATGCCAT 59.599 37.500 0.00 0.00 0.00 4.40
115 116 3.759086 TCAAGTGCGGTAATAAAATGCCA 59.241 39.130 0.00 0.00 0.00 4.92
116 117 4.364415 TCAAGTGCGGTAATAAAATGCC 57.636 40.909 0.00 0.00 0.00 4.40
117 118 5.804979 ACAATCAAGTGCGGTAATAAAATGC 59.195 36.000 0.00 0.00 0.00 3.56
118 119 7.540400 TCAACAATCAAGTGCGGTAATAAAATG 59.460 33.333 0.00 0.00 0.00 2.32
119 120 7.598278 TCAACAATCAAGTGCGGTAATAAAAT 58.402 30.769 0.00 0.00 0.00 1.82
120 121 6.971602 TCAACAATCAAGTGCGGTAATAAAA 58.028 32.000 0.00 0.00 0.00 1.52
121 122 6.428465 TCTCAACAATCAAGTGCGGTAATAAA 59.572 34.615 0.00 0.00 0.00 1.40
122 123 5.935206 TCTCAACAATCAAGTGCGGTAATAA 59.065 36.000 0.00 0.00 0.00 1.40
123 124 5.350365 GTCTCAACAATCAAGTGCGGTAATA 59.650 40.000 0.00 0.00 0.00 0.98
124 125 4.154195 GTCTCAACAATCAAGTGCGGTAAT 59.846 41.667 0.00 0.00 0.00 1.89
125 126 3.496884 GTCTCAACAATCAAGTGCGGTAA 59.503 43.478 0.00 0.00 0.00 2.85
126 127 3.064207 GTCTCAACAATCAAGTGCGGTA 58.936 45.455 0.00 0.00 0.00 4.02
127 128 1.873591 GTCTCAACAATCAAGTGCGGT 59.126 47.619 0.00 0.00 0.00 5.68
128 129 1.872952 TGTCTCAACAATCAAGTGCGG 59.127 47.619 0.00 0.00 30.70 5.69
129 130 3.818961 ATGTCTCAACAATCAAGTGCG 57.181 42.857 0.00 0.00 39.30 5.34
130 131 4.437930 GCCTATGTCTCAACAATCAAGTGC 60.438 45.833 0.00 0.00 39.30 4.40
131 132 4.940046 AGCCTATGTCTCAACAATCAAGTG 59.060 41.667 0.00 0.00 39.30 3.16
132 133 5.171339 AGCCTATGTCTCAACAATCAAGT 57.829 39.130 0.00 0.00 39.30 3.16
133 134 5.181009 TGAGCCTATGTCTCAACAATCAAG 58.819 41.667 0.00 0.00 39.30 3.02
134 135 5.164620 TGAGCCTATGTCTCAACAATCAA 57.835 39.130 0.00 0.00 39.30 2.57
135 136 4.383444 CCTGAGCCTATGTCTCAACAATCA 60.383 45.833 0.00 0.00 39.77 2.57
136 137 4.125703 CCTGAGCCTATGTCTCAACAATC 58.874 47.826 0.00 0.00 39.77 2.67
137 138 3.776969 TCCTGAGCCTATGTCTCAACAAT 59.223 43.478 0.00 0.00 39.77 2.71
138 139 3.173151 TCCTGAGCCTATGTCTCAACAA 58.827 45.455 0.00 0.00 39.77 2.83
139 140 2.762887 CTCCTGAGCCTATGTCTCAACA 59.237 50.000 0.00 0.00 39.77 3.33
140 141 2.763448 ACTCCTGAGCCTATGTCTCAAC 59.237 50.000 0.00 0.00 39.77 3.18
141 142 3.027412 GACTCCTGAGCCTATGTCTCAA 58.973 50.000 0.00 0.00 39.77 3.02
142 143 2.024941 TGACTCCTGAGCCTATGTCTCA 60.025 50.000 0.00 0.00 38.16 3.27
143 144 2.622942 CTGACTCCTGAGCCTATGTCTC 59.377 54.545 0.00 0.00 0.00 3.36
144 145 2.665165 CTGACTCCTGAGCCTATGTCT 58.335 52.381 0.00 0.00 0.00 3.41
145 146 1.686052 CCTGACTCCTGAGCCTATGTC 59.314 57.143 0.00 0.00 0.00 3.06
146 147 1.690845 CCCTGACTCCTGAGCCTATGT 60.691 57.143 0.00 0.00 0.00 2.29
147 148 1.047002 CCCTGACTCCTGAGCCTATG 58.953 60.000 0.00 0.00 0.00 2.23
148 149 0.639392 ACCCTGACTCCTGAGCCTAT 59.361 55.000 0.00 0.00 0.00 2.57
149 150 0.033011 GACCCTGACTCCTGAGCCTA 60.033 60.000 0.00 0.00 0.00 3.93
150 151 1.305718 GACCCTGACTCCTGAGCCT 60.306 63.158 0.00 0.00 0.00 4.58
151 152 0.980231 ATGACCCTGACTCCTGAGCC 60.980 60.000 0.00 0.00 0.00 4.70
152 153 0.908198 AATGACCCTGACTCCTGAGC 59.092 55.000 0.00 0.00 0.00 4.26
153 154 2.182827 TGAATGACCCTGACTCCTGAG 58.817 52.381 0.00 0.00 0.00 3.35
154 155 2.325661 TGAATGACCCTGACTCCTGA 57.674 50.000 0.00 0.00 0.00 3.86
155 156 2.421107 CCATGAATGACCCTGACTCCTG 60.421 54.545 0.00 0.00 0.00 3.86
156 157 1.842562 CCATGAATGACCCTGACTCCT 59.157 52.381 0.00 0.00 0.00 3.69
157 158 1.839994 TCCATGAATGACCCTGACTCC 59.160 52.381 0.00 0.00 0.00 3.85
158 159 2.237143 TGTCCATGAATGACCCTGACTC 59.763 50.000 0.00 0.00 0.00 3.36
159 160 2.269023 TGTCCATGAATGACCCTGACT 58.731 47.619 0.00 0.00 0.00 3.41
160 161 2.787473 TGTCCATGAATGACCCTGAC 57.213 50.000 0.00 0.00 0.00 3.51
161 162 3.805066 TTTGTCCATGAATGACCCTGA 57.195 42.857 0.00 0.00 0.00 3.86
162 163 5.047164 TCAAATTTGTCCATGAATGACCCTG 60.047 40.000 17.47 0.00 0.00 4.45
163 164 5.047092 GTCAAATTTGTCCATGAATGACCCT 60.047 40.000 17.47 0.00 31.99 4.34
164 165 5.170748 GTCAAATTTGTCCATGAATGACCC 58.829 41.667 17.47 0.00 31.99 4.46
165 166 5.782047 TGTCAAATTTGTCCATGAATGACC 58.218 37.500 17.47 0.00 36.10 4.02
166 167 6.680810 TCTGTCAAATTTGTCCATGAATGAC 58.319 36.000 17.47 5.48 37.15 3.06
167 168 6.897706 TCTGTCAAATTTGTCCATGAATGA 57.102 33.333 17.47 6.71 0.00 2.57
168 169 7.949903 TTTCTGTCAAATTTGTCCATGAATG 57.050 32.000 17.47 4.80 0.00 2.67
169 170 8.961294 TTTTTCTGTCAAATTTGTCCATGAAT 57.039 26.923 17.47 0.00 0.00 2.57
170 171 8.828644 CATTTTTCTGTCAAATTTGTCCATGAA 58.171 29.630 17.47 15.15 0.00 2.57
171 172 7.441760 CCATTTTTCTGTCAAATTTGTCCATGA 59.558 33.333 17.47 11.30 0.00 3.07
172 173 7.577979 CCATTTTTCTGTCAAATTTGTCCATG 58.422 34.615 17.47 9.35 0.00 3.66
173 174 6.205270 GCCATTTTTCTGTCAAATTTGTCCAT 59.795 34.615 17.47 0.00 0.00 3.41
174 175 5.526846 GCCATTTTTCTGTCAAATTTGTCCA 59.473 36.000 17.47 13.79 0.00 4.02
175 176 5.526846 TGCCATTTTTCTGTCAAATTTGTCC 59.473 36.000 17.47 10.20 0.00 4.02
176 177 6.421405 GTGCCATTTTTCTGTCAAATTTGTC 58.579 36.000 17.47 12.75 0.00 3.18
177 178 5.006552 CGTGCCATTTTTCTGTCAAATTTGT 59.993 36.000 17.47 0.00 0.00 2.83
178 179 5.233902 TCGTGCCATTTTTCTGTCAAATTTG 59.766 36.000 12.15 12.15 0.00 2.32
179 180 5.355596 TCGTGCCATTTTTCTGTCAAATTT 58.644 33.333 0.00 0.00 0.00 1.82
180 181 4.942852 TCGTGCCATTTTTCTGTCAAATT 58.057 34.783 0.00 0.00 0.00 1.82
181 182 4.582701 TCGTGCCATTTTTCTGTCAAAT 57.417 36.364 0.00 0.00 0.00 2.32
182 183 4.037327 TCATCGTGCCATTTTTCTGTCAAA 59.963 37.500 0.00 0.00 0.00 2.69
183 184 3.567585 TCATCGTGCCATTTTTCTGTCAA 59.432 39.130 0.00 0.00 0.00 3.18
184 185 3.145286 TCATCGTGCCATTTTTCTGTCA 58.855 40.909 0.00 0.00 0.00 3.58
185 186 3.436704 TCTCATCGTGCCATTTTTCTGTC 59.563 43.478 0.00 0.00 0.00 3.51
186 187 3.411446 TCTCATCGTGCCATTTTTCTGT 58.589 40.909 0.00 0.00 0.00 3.41
187 188 4.497006 GGATCTCATCGTGCCATTTTTCTG 60.497 45.833 0.00 0.00 0.00 3.02
188 189 3.629398 GGATCTCATCGTGCCATTTTTCT 59.371 43.478 0.00 0.00 0.00 2.52
193 194 4.384056 CTTTAGGATCTCATCGTGCCATT 58.616 43.478 0.00 0.00 0.00 3.16
198 199 3.126831 GGTGCTTTAGGATCTCATCGTG 58.873 50.000 0.00 0.00 0.00 4.35
201 202 3.648009 CTCGGTGCTTTAGGATCTCATC 58.352 50.000 0.00 0.00 0.00 2.92
204 205 1.137086 TGCTCGGTGCTTTAGGATCTC 59.863 52.381 3.53 0.00 43.37 2.75
209 210 3.006940 TGTATTTGCTCGGTGCTTTAGG 58.993 45.455 3.53 0.00 43.37 2.69
211 212 3.932822 TCTGTATTTGCTCGGTGCTTTA 58.067 40.909 3.53 0.00 43.37 1.85
213 214 2.472695 TCTGTATTTGCTCGGTGCTT 57.527 45.000 3.53 0.00 43.37 3.91
218 219 6.182039 TCTTCATTTTCTGTATTTGCTCGG 57.818 37.500 0.00 0.00 0.00 4.63
220 221 7.540055 CCTGTTCTTCATTTTCTGTATTTGCTC 59.460 37.037 0.00 0.00 0.00 4.26
222 223 6.089954 GCCTGTTCTTCATTTTCTGTATTTGC 59.910 38.462 0.00 0.00 0.00 3.68
224 225 7.231317 TCTGCCTGTTCTTCATTTTCTGTATTT 59.769 33.333 0.00 0.00 0.00 1.40
227 228 5.470098 GTCTGCCTGTTCTTCATTTTCTGTA 59.530 40.000 0.00 0.00 0.00 2.74
232 233 3.953612 TGTGTCTGCCTGTTCTTCATTTT 59.046 39.130 0.00 0.00 0.00 1.82
256 257 4.962155 AGAAGATTTTGACAACGAGAGGT 58.038 39.130 0.00 0.00 0.00 3.85
261 263 5.050091 GCTCTGAAGAAGATTTTGACAACGA 60.050 40.000 0.00 0.00 33.29 3.85
340 358 4.447290 TGTCTTCACGTTTCAGAAATCCA 58.553 39.130 0.00 0.00 0.00 3.41
364 382 1.557371 CTCCTCCAACTTCTTCTCCCC 59.443 57.143 0.00 0.00 0.00 4.81
377 396 2.043852 GCTCGTCCTCCTCCTCCA 60.044 66.667 0.00 0.00 0.00 3.86
503 522 1.686052 TGCTGTGTTCCAATTCCAACC 59.314 47.619 0.00 0.00 0.00 3.77
614 637 2.286833 CGCGTGAAGAGGTTTCTCAAAA 59.713 45.455 0.00 0.00 42.34 2.44
615 638 1.864711 CGCGTGAAGAGGTTTCTCAAA 59.135 47.619 0.00 0.00 42.34 2.69
648 671 7.778083 ACTTTGTAAAAATTCCTCCGAACTTT 58.222 30.769 0.00 0.00 28.95 2.66
654 677 6.908825 TCATGACTTTGTAAAAATTCCTCCG 58.091 36.000 0.00 0.00 0.00 4.63
664 687 7.041372 GCTAGTTTCACCTCATGACTTTGTAAA 60.041 37.037 0.00 0.00 36.92 2.01
678 701 5.273208 TCTAGATTCTGGCTAGTTTCACCT 58.727 41.667 0.00 0.00 37.28 4.00
693 716 9.377312 AGCAAAGTTTTCACTATCTCTAGATTC 57.623 33.333 0.00 0.00 36.05 2.52
706 742 5.230097 GCAGACAGTTTAGCAAAGTTTTCAC 59.770 40.000 0.00 0.00 0.00 3.18
714 750 5.574891 TTTGAAGCAGACAGTTTAGCAAA 57.425 34.783 0.00 0.00 0.00 3.68
780 816 2.335369 CCCGAGGCCGATTCTACG 59.665 66.667 0.00 0.00 38.22 3.51
781 817 2.029221 GCCCGAGGCCGATTCTAC 59.971 66.667 0.00 0.00 44.06 2.59
822 2410 0.179189 CCGAGCGAGAAAACAATGGC 60.179 55.000 0.00 0.00 0.00 4.40
886 2475 0.168128 GGAATGTGCTACGTGGCAAC 59.832 55.000 28.88 21.11 44.18 4.17
887 2476 1.295357 CGGAATGTGCTACGTGGCAA 61.295 55.000 28.88 18.16 44.18 4.52
888 2477 1.739929 CGGAATGTGCTACGTGGCA 60.740 57.895 23.68 23.68 40.15 4.92
889 2478 3.089784 CGGAATGTGCTACGTGGC 58.910 61.111 18.00 18.00 0.00 5.01
931 2520 0.902516 GAGAGGTGGAGGTGAGCAGT 60.903 60.000 0.00 0.00 0.00 4.40
1464 3059 3.621805 TCCAGGTTCAGCGCGGAA 61.622 61.111 19.21 19.21 0.00 4.30
1674 3269 4.320456 CCCAGCAGCGTGTCCAGT 62.320 66.667 0.00 0.00 0.00 4.00
1817 3412 2.134630 CTGGAGCTTGGTCTTGGCCT 62.135 60.000 3.32 0.00 0.00 5.19
1857 3452 5.799213 CTCACCTTCTTGAGTATGACCTTT 58.201 41.667 0.00 0.00 38.61 3.11
1885 3480 1.915614 CTAGCGTTGCTTGCACCAGG 61.916 60.000 0.00 0.00 40.44 4.45
1886 3481 1.499056 CTAGCGTTGCTTGCACCAG 59.501 57.895 0.00 0.00 40.44 4.00
1897 3492 2.005960 AAGCCGATCGAGCTAGCGTT 62.006 55.000 24.78 11.18 40.49 4.84
1962 3560 1.855213 GCAAATCAGAGCACGCACCA 61.855 55.000 0.00 0.00 0.00 4.17
2525 4621 4.932105 TGCAAAGGTGGGTGCCCC 62.932 66.667 4.59 3.42 45.71 5.80
2538 4634 3.192422 CCTCGGGTGATAATTTGTTGCAA 59.808 43.478 0.00 0.00 0.00 4.08
2539 4635 2.752354 CCTCGGGTGATAATTTGTTGCA 59.248 45.455 0.00 0.00 0.00 4.08
2544 4640 3.388024 TCTCCTCCTCGGGTGATAATTTG 59.612 47.826 0.00 0.00 0.00 2.32
2548 4644 2.840640 TTCTCCTCCTCGGGTGATAA 57.159 50.000 0.00 0.00 0.00 1.75
2549 4645 2.243994 TCTTTCTCCTCCTCGGGTGATA 59.756 50.000 0.00 0.00 0.00 2.15
2550 4646 1.007238 TCTTTCTCCTCCTCGGGTGAT 59.993 52.381 0.00 0.00 0.00 3.06
2552 4648 0.533032 GTCTTTCTCCTCCTCGGGTG 59.467 60.000 0.00 0.00 0.00 4.61
2553 4649 0.114560 TGTCTTTCTCCTCCTCGGGT 59.885 55.000 0.00 0.00 0.00 5.28
2572 4685 1.084289 GGCGATAGAGGCGTTTTTGT 58.916 50.000 0.00 0.00 39.76 2.83
2579 4692 1.025113 TAGATCGGGCGATAGAGGCG 61.025 60.000 0.00 0.00 34.60 5.52
2582 4695 1.740585 CCACTAGATCGGGCGATAGAG 59.259 57.143 0.00 0.00 34.60 2.43
2584 4697 1.822506 TCCACTAGATCGGGCGATAG 58.177 55.000 0.00 0.00 34.60 2.08
2620 4734 1.442184 CGTCCGACGACCTTGACTG 60.442 63.158 16.03 0.00 46.05 3.51
2646 4760 1.688197 CTTTGATGTGGGGTTGTGCTT 59.312 47.619 0.00 0.00 0.00 3.91
2682 4796 0.598065 GACAATGTGTGCAAGTCCCC 59.402 55.000 0.00 0.00 31.64 4.81
2694 4809 2.281517 TGAAACCAACGACGACAATGT 58.718 42.857 0.00 0.00 0.00 2.71
2720 4835 7.182026 TGTCCAGGAGAAATCCTTATTCTTGTA 59.818 37.037 0.00 0.00 38.22 2.41
2723 4838 6.642733 TGTCCAGGAGAAATCCTTATTCTT 57.357 37.500 0.00 0.00 38.22 2.52
2741 4856 1.561076 CATGAGGTTGAGGGATGTCCA 59.439 52.381 0.86 0.00 38.24 4.02
2775 4890 3.122150 CGATTGCACTCGTGGAAGA 57.878 52.632 17.44 0.00 43.89 2.87
2782 4897 2.182825 GTAGTGGTACGATTGCACTCG 58.817 52.381 23.06 23.06 44.14 4.18
2804 4920 3.187022 ACTTTTACGTCGTTTGTATGGGC 59.813 43.478 1.78 0.00 0.00 5.36
2821 4937 2.031683 CGACACCTTTCGAAGCACTTTT 59.968 45.455 0.00 0.00 41.78 2.27
2845 4961 3.775654 CTCTGGCTCCGTGGACCC 61.776 72.222 0.00 0.00 0.00 4.46
2872 4988 1.212751 GGGTCTTTGGCGAACATGC 59.787 57.895 0.00 0.00 0.00 4.06
2883 4999 4.675029 CGGTCGCGGTGGGTCTTT 62.675 66.667 6.13 0.00 0.00 2.52
2938 5055 6.127026 GGACTACAATCAGGACTACATTTCCT 60.127 42.308 0.00 0.00 44.97 3.36
2939 5056 6.049790 GGACTACAATCAGGACTACATTTCC 58.950 44.000 0.00 0.00 0.00 3.13
2940 5057 6.758886 CAGGACTACAATCAGGACTACATTTC 59.241 42.308 0.00 0.00 0.00 2.17
2941 5058 6.440647 TCAGGACTACAATCAGGACTACATTT 59.559 38.462 0.00 0.00 0.00 2.32
2942 5059 5.958380 TCAGGACTACAATCAGGACTACATT 59.042 40.000 0.00 0.00 0.00 2.71
2943 5060 5.519808 TCAGGACTACAATCAGGACTACAT 58.480 41.667 0.00 0.00 0.00 2.29
2944 5061 4.930696 TCAGGACTACAATCAGGACTACA 58.069 43.478 0.00 0.00 0.00 2.74
2945 5062 6.127310 ACAATCAGGACTACAATCAGGACTAC 60.127 42.308 0.00 0.00 0.00 2.73
2946 5063 5.958380 ACAATCAGGACTACAATCAGGACTA 59.042 40.000 0.00 0.00 0.00 2.59
2947 5064 4.780021 ACAATCAGGACTACAATCAGGACT 59.220 41.667 0.00 0.00 0.00 3.85
2948 5065 4.872691 CACAATCAGGACTACAATCAGGAC 59.127 45.833 0.00 0.00 0.00 3.85
2949 5066 4.532126 ACACAATCAGGACTACAATCAGGA 59.468 41.667 0.00 0.00 0.00 3.86
2950 5067 4.836825 ACACAATCAGGACTACAATCAGG 58.163 43.478 0.00 0.00 0.00 3.86
2951 5068 5.934043 TGAACACAATCAGGACTACAATCAG 59.066 40.000 0.00 0.00 0.00 2.90
2952 5069 5.700832 GTGAACACAATCAGGACTACAATCA 59.299 40.000 0.00 0.00 0.00 2.57
2953 5070 5.122396 GGTGAACACAATCAGGACTACAATC 59.878 44.000 7.25 0.00 0.00 2.67
2954 5071 5.003804 GGTGAACACAATCAGGACTACAAT 58.996 41.667 7.25 0.00 0.00 2.71
2955 5072 4.141597 TGGTGAACACAATCAGGACTACAA 60.142 41.667 7.25 0.00 0.00 2.41
2956 5073 3.389656 TGGTGAACACAATCAGGACTACA 59.610 43.478 7.25 0.00 0.00 2.74
2966 5083 3.253188 CCACGAGAAATGGTGAACACAAT 59.747 43.478 7.25 0.00 36.25 2.71
2981 5098 1.067142 GCACTATGTTGGTCCACGAGA 60.067 52.381 0.00 0.00 0.00 4.04
2985 5102 1.644786 GCGGCACTATGTTGGTCCAC 61.645 60.000 0.00 0.00 0.00 4.02
2996 5113 3.561241 TGGTTGGTGGCGGCACTA 61.561 61.111 36.61 30.96 0.00 2.74
3007 5124 1.275291 ACTCGGACTACATGTGGTTGG 59.725 52.381 16.63 11.16 0.00 3.77
3023 5140 0.520827 GTAGTTGCTCCGACGACTCG 60.521 60.000 0.00 0.00 39.83 4.18
3024 5141 0.520404 TGTAGTTGCTCCGACGACTC 59.480 55.000 0.00 0.00 35.79 3.36
3025 5142 0.956633 TTGTAGTTGCTCCGACGACT 59.043 50.000 0.00 0.00 37.96 4.18
3026 5143 1.719780 CTTTGTAGTTGCTCCGACGAC 59.280 52.381 0.00 0.00 0.00 4.34
3027 5144 1.610038 TCTTTGTAGTTGCTCCGACGA 59.390 47.619 0.00 0.00 0.00 4.20
3028 5145 1.986378 CTCTTTGTAGTTGCTCCGACG 59.014 52.381 0.00 0.00 0.00 5.12
3029 5146 2.338500 CCTCTTTGTAGTTGCTCCGAC 58.662 52.381 0.00 0.00 0.00 4.79
3030 5147 1.337823 GCCTCTTTGTAGTTGCTCCGA 60.338 52.381 0.00 0.00 0.00 4.55
3032 5149 1.807142 GTGCCTCTTTGTAGTTGCTCC 59.193 52.381 0.00 0.00 0.00 4.70
3114 5342 4.109050 CCAACCATGTTAACACACAACAC 58.891 43.478 11.22 0.00 38.63 3.32
3115 5343 4.017126 TCCAACCATGTTAACACACAACA 58.983 39.130 11.22 0.00 40.01 3.33
3116 5344 4.640789 TCCAACCATGTTAACACACAAC 57.359 40.909 11.22 0.00 35.03 3.32
3117 5345 4.098654 CCTTCCAACCATGTTAACACACAA 59.901 41.667 11.22 0.00 35.03 3.33
3118 5346 3.634448 CCTTCCAACCATGTTAACACACA 59.366 43.478 11.22 0.00 35.03 3.72
3148 5376 9.090692 CCTATTTTCAAGCATGTATTTTTCTGG 57.909 33.333 0.00 0.00 0.00 3.86
3149 5377 9.090692 CCCTATTTTCAAGCATGTATTTTTCTG 57.909 33.333 0.00 0.00 0.00 3.02
3163 5391 3.375299 CGGAGCTTCACCCTATTTTCAAG 59.625 47.826 0.00 0.00 0.00 3.02
3177 5405 6.205076 TGACTATATAAGACTCACGGAGCTTC 59.795 42.308 11.03 0.00 32.01 3.86
3197 5425 8.904834 GGAGAATCTTCTGTACTTGTATGACTA 58.095 37.037 0.00 0.00 37.73 2.59
3198 5426 7.397476 TGGAGAATCTTCTGTACTTGTATGACT 59.603 37.037 0.00 0.00 37.73 3.41
3201 5429 9.689976 CTATGGAGAATCTTCTGTACTTGTATG 57.310 37.037 0.00 0.00 37.73 2.39
3204 5432 7.962995 TCTATGGAGAATCTTCTGTACTTGT 57.037 36.000 0.00 0.00 37.73 3.16
3282 5510 1.751437 GGTTCAAGACCTGTATGGGC 58.249 55.000 0.00 0.00 45.55 5.36
3292 5520 6.702329 TCTTTCTATGGAGAAGGTTCAAGAC 58.298 40.000 0.00 0.00 42.66 3.01
3293 5521 6.935240 TCTTTCTATGGAGAAGGTTCAAGA 57.065 37.500 0.00 0.00 42.66 3.02
3294 5522 7.663493 ACTTTCTTTCTATGGAGAAGGTTCAAG 59.337 37.037 0.00 0.00 42.66 3.02
3295 5523 7.445402 CACTTTCTTTCTATGGAGAAGGTTCAA 59.555 37.037 0.00 0.00 42.66 2.69
3296 5524 6.936900 CACTTTCTTTCTATGGAGAAGGTTCA 59.063 38.462 0.00 0.00 42.66 3.18
3297 5525 6.128145 GCACTTTCTTTCTATGGAGAAGGTTC 60.128 42.308 0.00 0.00 42.66 3.62
3298 5526 5.707764 GCACTTTCTTTCTATGGAGAAGGTT 59.292 40.000 0.00 0.00 42.66 3.50
3299 5527 5.221925 TGCACTTTCTTTCTATGGAGAAGGT 60.222 40.000 0.00 0.00 42.66 3.50
3300 5528 5.248640 TGCACTTTCTTTCTATGGAGAAGG 58.751 41.667 0.00 0.00 42.66 3.46
3301 5529 6.808008 TTGCACTTTCTTTCTATGGAGAAG 57.192 37.500 0.00 0.00 42.66 2.85
3302 5530 7.765695 ATTTGCACTTTCTTTCTATGGAGAA 57.234 32.000 0.00 0.00 40.04 2.87
3303 5531 7.554118 CCTATTTGCACTTTCTTTCTATGGAGA 59.446 37.037 0.00 0.00 0.00 3.71
3304 5532 7.554118 TCCTATTTGCACTTTCTTTCTATGGAG 59.446 37.037 0.00 0.00 0.00 3.86
3305 5533 7.402054 TCCTATTTGCACTTTCTTTCTATGGA 58.598 34.615 0.00 0.00 0.00 3.41
3306 5534 7.630242 TCCTATTTGCACTTTCTTTCTATGG 57.370 36.000 0.00 0.00 0.00 2.74
3307 5535 9.912634 TTTTCCTATTTGCACTTTCTTTCTATG 57.087 29.630 0.00 0.00 0.00 2.23
3309 5537 9.349713 TCTTTTCCTATTTGCACTTTCTTTCTA 57.650 29.630 0.00 0.00 0.00 2.10
3310 5538 8.237811 TCTTTTCCTATTTGCACTTTCTTTCT 57.762 30.769 0.00 0.00 0.00 2.52
3311 5539 8.871686 TTCTTTTCCTATTTGCACTTTCTTTC 57.128 30.769 0.00 0.00 0.00 2.62
3312 5540 9.264719 CATTCTTTTCCTATTTGCACTTTCTTT 57.735 29.630 0.00 0.00 0.00 2.52
3313 5541 8.641541 TCATTCTTTTCCTATTTGCACTTTCTT 58.358 29.630 0.00 0.00 0.00 2.52
3314 5542 8.181904 TCATTCTTTTCCTATTTGCACTTTCT 57.818 30.769 0.00 0.00 0.00 2.52
3315 5543 8.992835 ATCATTCTTTTCCTATTTGCACTTTC 57.007 30.769 0.00 0.00 0.00 2.62
3316 5544 9.783081 AAATCATTCTTTTCCTATTTGCACTTT 57.217 25.926 0.00 0.00 0.00 2.66
3317 5545 9.428097 GAAATCATTCTTTTCCTATTTGCACTT 57.572 29.630 0.00 0.00 32.57 3.16
3318 5546 8.810041 AGAAATCATTCTTTTCCTATTTGCACT 58.190 29.630 0.00 0.00 43.43 4.40
3319 5547 8.866956 CAGAAATCATTCTTTTCCTATTTGCAC 58.133 33.333 0.00 0.00 43.43 4.57
3320 5548 8.587608 ACAGAAATCATTCTTTTCCTATTTGCA 58.412 29.630 0.00 0.00 43.43 4.08
3321 5549 8.992835 ACAGAAATCATTCTTTTCCTATTTGC 57.007 30.769 0.00 0.00 43.43 3.68
3383 5613 0.463116 AACGCGAAGGTCACAGGTTT 60.463 50.000 15.93 0.00 0.00 3.27
3445 5675 5.630661 AAGATGCTATTCGATACGTAGCT 57.369 39.130 9.44 0.00 41.01 3.32
3452 5682 8.699749 CGTTCAACAATAAGATGCTATTCGATA 58.300 33.333 0.00 0.00 0.00 2.92
3477 5811 6.304126 GTGTTGTCCAATGTACACTTTATCG 58.696 40.000 0.00 0.00 38.23 2.92
3499 5833 4.093952 CAAGCAAGCCGAGCGGTG 62.094 66.667 10.94 3.05 37.65 4.94
3628 5989 3.760035 GAGCGGCTCCAGGTTCGA 61.760 66.667 19.20 0.00 0.00 3.71
4146 6507 1.142748 GATCTGCAGGTCGGGTCTG 59.857 63.158 12.06 0.00 35.49 3.51
4339 6703 3.297830 TGATCGCTCGTTCAAAGAAGA 57.702 42.857 1.07 0.00 0.00 2.87
4344 6708 1.533731 GGGTTTGATCGCTCGTTCAAA 59.466 47.619 18.73 18.73 39.81 2.69
4351 6715 0.749454 ATGCAGGGGTTTGATCGCTC 60.749 55.000 0.00 0.00 0.00 5.03
4388 6752 5.068636 CAGGACAGAATTTATGGGATGGAG 58.931 45.833 0.00 0.00 0.00 3.86
4693 7058 2.045926 GAGCACGGCCTCCATTGT 60.046 61.111 0.00 0.00 0.00 2.71
4711 7076 4.406972 TGGCAGTCAATAGAGCTTCAGTAT 59.593 41.667 0.00 0.00 0.00 2.12
4713 7078 2.568956 TGGCAGTCAATAGAGCTTCAGT 59.431 45.455 0.00 0.00 0.00 3.41
4732 7097 0.038744 AACCTGATGTTCCTGCCTGG 59.961 55.000 0.00 0.00 28.45 4.45
4861 7226 7.381948 CGACATTCATCTTCTTGAGAGATAAGG 59.618 40.741 0.00 0.00 37.93 2.69
4937 7305 8.175069 TGCTCAAACTAAATGTCATTTCGATAC 58.825 33.333 14.07 0.15 33.82 2.24
4989 7357 0.802494 ACACAAATGTTCCGCCGATC 59.198 50.000 0.00 0.00 34.46 3.69
5023 7391 1.005347 GTTTTCGTGTCTGTGGACGTG 60.005 52.381 0.00 0.00 44.83 4.49
5065 7433 0.449388 CTCCTACGTACGCCGAACTT 59.551 55.000 16.72 0.00 40.70 2.66
5137 7505 2.200067 TGCCAACATTTTTCAACTGCG 58.800 42.857 0.00 0.00 0.00 5.18
5153 7521 3.577848 AGCTGTTTTCATTAACCATGCCA 59.422 39.130 0.00 0.00 32.13 4.92
5154 7522 3.928375 CAGCTGTTTTCATTAACCATGCC 59.072 43.478 5.25 0.00 32.13 4.40
5166 7534 2.297033 TGGAATTCCTGCAGCTGTTTTC 59.703 45.455 24.73 9.21 36.82 2.29
5198 7566 3.726557 AGGATATATGGGTGCATGTGG 57.273 47.619 0.00 0.00 0.00 4.17
5209 7577 8.127150 TCATACTCTGGACACAAGGATATATG 57.873 38.462 0.00 0.00 0.00 1.78
5273 7641 3.688673 GGAGAAGAAAGTGGAAGATGCAG 59.311 47.826 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.