Multiple sequence alignment - TraesCS1B01G311000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G311000 chr1B 100.000 4785 0 0 1 4785 534174981 534170197 0.000000e+00 8837
1 TraesCS1B01G311000 chr1B 85.625 160 16 5 2180 2332 161379588 161379747 1.380000e-35 161
2 TraesCS1B01G311000 chr1A 94.455 1533 58 13 2376 3896 495593685 495592168 0.000000e+00 2335
3 TraesCS1B01G311000 chr1A 92.884 1349 39 25 879 2186 495595076 495593744 0.000000e+00 1906
4 TraesCS1B01G311000 chr1A 89.958 239 16 5 3902 4140 495592118 495591888 7.780000e-78 302
5 TraesCS1B01G311000 chr1A 90.217 184 15 1 492 672 495595256 495595073 2.230000e-58 237
6 TraesCS1B01G311000 chr1A 81.567 217 31 6 215 431 495595451 495595244 2.290000e-38 171
7 TraesCS1B01G311000 chrUn 95.969 645 25 1 4141 4785 182334861 182334218 0.000000e+00 1046
8 TraesCS1B01G311000 chrUn 95.511 646 26 2 4141 4785 60485304 60484661 0.000000e+00 1029
9 TraesCS1B01G311000 chrUn 94.892 646 29 2 4140 4785 67140424 67139783 0.000000e+00 1007
10 TraesCS1B01G311000 chr3B 95.679 648 24 2 4138 4785 752920360 752921003 0.000000e+00 1038
11 TraesCS1B01G311000 chr3B 93.808 646 35 3 4140 4785 449015371 449014731 0.000000e+00 966
12 TraesCS1B01G311000 chr3B 98.438 192 3 0 675 866 798155206 798155015 5.930000e-89 339
13 TraesCS1B01G311000 chr3B 88.125 160 12 6 2184 2340 539563693 539563848 2.940000e-42 183
14 TraesCS1B01G311000 chr3B 85.714 161 20 3 2181 2340 254847764 254847606 2.960000e-37 167
15 TraesCS1B01G311000 chr3B 85.000 160 17 7 2180 2332 550976630 550976789 6.410000e-34 156
16 TraesCS1B01G311000 chr7B 95.253 653 27 3 4133 4785 7525600 7524952 0.000000e+00 1031
17 TraesCS1B01G311000 chr7B 95.223 649 24 3 4141 4785 677807875 677808520 0.000000e+00 1020
18 TraesCS1B01G311000 chr7B 93.653 646 28 8 4141 4785 658478702 658479335 0.000000e+00 953
19 TraesCS1B01G311000 chr2B 94.729 645 29 3 4141 4785 800928393 800929032 0.000000e+00 998
20 TraesCS1B01G311000 chr2B 97.938 194 4 0 676 869 675704909 675704716 2.130000e-88 337
21 TraesCS1B01G311000 chr1D 88.415 751 40 18 879 1620 398874223 398873511 0.000000e+00 861
22 TraesCS1B01G311000 chr1D 90.924 617 35 10 3040 3642 398872077 398871468 0.000000e+00 809
23 TraesCS1B01G311000 chr1D 87.539 634 42 14 40 672 398874817 398874220 0.000000e+00 699
24 TraesCS1B01G311000 chr1D 90.465 409 28 5 3738 4140 398870861 398870458 3.280000e-146 529
25 TraesCS1B01G311000 chr1D 82.263 327 18 24 1687 1987 398873468 398873156 3.700000e-61 246
26 TraesCS1B01G311000 chr1D 96.581 117 4 0 3639 3755 398871327 398871211 1.360000e-45 195
27 TraesCS1B01G311000 chr6B 98.462 195 3 0 675 869 719727157 719727351 1.270000e-90 344
28 TraesCS1B01G311000 chr6B 97.949 195 4 0 675 869 76215777 76215583 5.930000e-89 339
29 TraesCS1B01G311000 chr6B 98.438 192 3 0 675 866 101274062 101274253 5.930000e-89 339
30 TraesCS1B01G311000 chr6B 85.535 159 18 5 2185 2340 160660816 160660972 1.380000e-35 161
31 TraesCS1B01G311000 chr6B 84.615 169 17 7 2182 2341 707312595 707312763 4.960000e-35 159
32 TraesCS1B01G311000 chr5B 98.462 195 3 0 675 869 699242908 699242714 1.270000e-90 344
33 TraesCS1B01G311000 chr5B 96.970 198 6 0 675 872 463916531 463916334 2.760000e-87 333
34 TraesCS1B01G311000 chr5B 96.954 197 5 1 665 860 272775384 272775580 3.570000e-86 329
35 TraesCS1B01G311000 chr4B 95.694 209 6 3 659 866 436251453 436251247 2.760000e-87 333
36 TraesCS1B01G311000 chr5A 86.667 150 16 4 2185 2332 404665068 404664921 3.830000e-36 163
37 TraesCS1B01G311000 chr4A 86.577 149 17 3 2185 2332 656818305 656818159 1.380000e-35 161
38 TraesCS1B01G311000 chr3A 86.093 151 19 2 2184 2332 171363249 171363399 1.380000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G311000 chr1B 534170197 534174981 4784 True 8837.0 8837 100.0000 1 4785 1 chr1B.!!$R1 4784
1 TraesCS1B01G311000 chr1A 495591888 495595451 3563 True 990.2 2335 89.8162 215 4140 5 chr1A.!!$R1 3925
2 TraesCS1B01G311000 chrUn 182334218 182334861 643 True 1046.0 1046 95.9690 4141 4785 1 chrUn.!!$R3 644
3 TraesCS1B01G311000 chrUn 60484661 60485304 643 True 1029.0 1029 95.5110 4141 4785 1 chrUn.!!$R1 644
4 TraesCS1B01G311000 chrUn 67139783 67140424 641 True 1007.0 1007 94.8920 4140 4785 1 chrUn.!!$R2 645
5 TraesCS1B01G311000 chr3B 752920360 752921003 643 False 1038.0 1038 95.6790 4138 4785 1 chr3B.!!$F3 647
6 TraesCS1B01G311000 chr3B 449014731 449015371 640 True 966.0 966 93.8080 4140 4785 1 chr3B.!!$R2 645
7 TraesCS1B01G311000 chr7B 7524952 7525600 648 True 1031.0 1031 95.2530 4133 4785 1 chr7B.!!$R1 652
8 TraesCS1B01G311000 chr7B 677807875 677808520 645 False 1020.0 1020 95.2230 4141 4785 1 chr7B.!!$F2 644
9 TraesCS1B01G311000 chr7B 658478702 658479335 633 False 953.0 953 93.6530 4141 4785 1 chr7B.!!$F1 644
10 TraesCS1B01G311000 chr2B 800928393 800929032 639 False 998.0 998 94.7290 4141 4785 1 chr2B.!!$F1 644
11 TraesCS1B01G311000 chr1D 398870458 398874817 4359 True 556.5 861 89.3645 40 4140 6 chr1D.!!$R1 4100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 845 0.108585 AGCAGCCACCGAAGAAAAGA 59.891 50.0 0.0 0.0 0.0 2.52 F
2274 2521 0.109504 AACCACAAACGCACACACAC 60.110 50.0 0.0 0.0 0.0 3.82 F
2297 2544 0.039527 GTTCAAATCCACACACGCCC 60.040 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2525 0.039527 GGGCGTGTGTGGATTTGAAC 60.040 55.000 0.0 0.0 0.0 3.18 R
3446 3917 1.208293 GCGTCTTCCTCCTCCTTCAAT 59.792 52.381 0.0 0.0 0.0 2.57 R
3879 4867 1.446966 GGGCGAGCTTCAGAGACAC 60.447 63.158 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.923665 CAAATCACGAGTTACAAGGGTTAC 58.076 41.667 0.00 0.00 0.00 2.50
24 25 5.479124 AATCACGAGTTACAAGGGTTACT 57.521 39.130 0.00 0.00 39.43 2.24
25 26 6.594788 AATCACGAGTTACAAGGGTTACTA 57.405 37.500 0.00 0.00 37.04 1.82
26 27 6.786967 ATCACGAGTTACAAGGGTTACTAT 57.213 37.500 0.00 0.00 37.04 2.12
27 28 6.199937 TCACGAGTTACAAGGGTTACTATC 57.800 41.667 0.00 0.00 37.04 2.08
28 29 5.711506 TCACGAGTTACAAGGGTTACTATCA 59.288 40.000 0.00 0.00 37.04 2.15
29 30 6.034591 CACGAGTTACAAGGGTTACTATCAG 58.965 44.000 0.00 0.00 37.04 2.90
30 31 5.126707 ACGAGTTACAAGGGTTACTATCAGG 59.873 44.000 0.00 0.00 37.04 3.86
31 32 5.126707 CGAGTTACAAGGGTTACTATCAGGT 59.873 44.000 0.00 0.00 37.04 4.00
32 33 6.350780 CGAGTTACAAGGGTTACTATCAGGTT 60.351 42.308 0.00 0.00 37.04 3.50
33 34 7.148018 CGAGTTACAAGGGTTACTATCAGGTTA 60.148 40.741 0.00 0.00 37.04 2.85
34 35 8.075761 AGTTACAAGGGTTACTATCAGGTTAG 57.924 38.462 0.00 0.00 35.28 2.34
35 36 7.677319 AGTTACAAGGGTTACTATCAGGTTAGT 59.323 37.037 0.00 0.00 35.28 2.24
36 37 6.541934 ACAAGGGTTACTATCAGGTTAGTC 57.458 41.667 0.00 0.00 34.35 2.59
37 38 6.262207 ACAAGGGTTACTATCAGGTTAGTCT 58.738 40.000 0.00 0.00 34.35 3.24
38 39 6.729569 ACAAGGGTTACTATCAGGTTAGTCTT 59.270 38.462 0.00 0.00 34.35 3.01
39 40 7.237055 ACAAGGGTTACTATCAGGTTAGTCTTT 59.763 37.037 0.00 0.00 34.35 2.52
40 41 7.809880 AGGGTTACTATCAGGTTAGTCTTTT 57.190 36.000 0.00 0.00 34.35 2.27
41 42 8.906238 AGGGTTACTATCAGGTTAGTCTTTTA 57.094 34.615 0.00 0.00 34.35 1.52
42 43 8.979534 AGGGTTACTATCAGGTTAGTCTTTTAG 58.020 37.037 0.00 0.00 34.35 1.85
43 44 8.202811 GGGTTACTATCAGGTTAGTCTTTTAGG 58.797 40.741 0.00 0.00 34.35 2.69
44 45 8.202811 GGTTACTATCAGGTTAGTCTTTTAGGG 58.797 40.741 0.00 0.00 34.35 3.53
45 46 8.975295 GTTACTATCAGGTTAGTCTTTTAGGGA 58.025 37.037 0.00 0.00 34.35 4.20
46 47 9.551339 TTACTATCAGGTTAGTCTTTTAGGGAA 57.449 33.333 0.00 0.00 34.35 3.97
47 48 7.849160 ACTATCAGGTTAGTCTTTTAGGGAAC 58.151 38.462 0.00 0.00 0.00 3.62
53 54 5.414765 GGTTAGTCTTTTAGGGAACACATGG 59.585 44.000 0.00 0.00 0.00 3.66
84 85 3.779759 TCACACAATGTTGTTTTGCTCC 58.220 40.909 0.00 0.00 39.91 4.70
99 100 4.966787 TCCGTGGTTGGGCTTGGC 62.967 66.667 0.00 0.00 0.00 4.52
120 121 2.223971 CGGGCCGAGACACTGTTATAAT 60.224 50.000 24.41 0.00 0.00 1.28
129 130 4.018415 AGACACTGTTATAATGGCCCTGTT 60.018 41.667 0.00 0.00 0.00 3.16
162 163 6.599244 TGAGCCATAGATTTTGGTTTAGTGAG 59.401 38.462 0.00 0.00 36.57 3.51
165 166 7.553044 AGCCATAGATTTTGGTTTAGTGAGTAC 59.447 37.037 0.00 0.00 36.57 2.73
171 172 4.460948 TTGGTTTAGTGAGTACGGGATC 57.539 45.455 0.00 0.00 0.00 3.36
178 179 2.034305 AGTGAGTACGGGATCGCATAAC 59.966 50.000 10.70 4.52 40.63 1.89
181 182 2.029623 AGTACGGGATCGCATAACTGT 58.970 47.619 10.70 1.07 40.63 3.55
182 183 3.216800 AGTACGGGATCGCATAACTGTA 58.783 45.455 10.70 0.12 40.63 2.74
183 184 3.825014 AGTACGGGATCGCATAACTGTAT 59.175 43.478 10.70 0.00 40.63 2.29
184 185 3.746045 ACGGGATCGCATAACTGTATT 57.254 42.857 10.70 0.00 40.63 1.89
185 186 3.390135 ACGGGATCGCATAACTGTATTG 58.610 45.455 10.70 0.00 40.63 1.90
186 187 2.736721 CGGGATCGCATAACTGTATTGG 59.263 50.000 10.70 0.00 0.00 3.16
256 257 0.913934 TGCAGTATTCCAGCCCTCCA 60.914 55.000 0.00 0.00 0.00 3.86
297 298 3.372025 GCCTTTGTATGTCCTCCCAATCT 60.372 47.826 0.00 0.00 0.00 2.40
298 299 4.455606 CCTTTGTATGTCCTCCCAATCTC 58.544 47.826 0.00 0.00 0.00 2.75
315 316 3.787001 CCCACCTCGGCTTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
346 347 3.575256 TCGAGCGGTATATGTAATGGGTT 59.425 43.478 0.00 0.00 0.00 4.11
363 365 2.481568 GGGTTGCTACTCCGTAACAAAC 59.518 50.000 0.00 0.00 32.88 2.93
367 369 4.799419 TGCTACTCCGTAACAAACAAAC 57.201 40.909 0.00 0.00 0.00 2.93
379 381 9.650371 CCGTAACAAACAAACTATATGATCATG 57.350 33.333 18.72 4.21 0.00 3.07
400 402 6.381133 TCATGCATAATCGATCATAGGTAGGT 59.619 38.462 0.00 0.00 0.00 3.08
459 461 2.507407 TCAAAAAGGAGGAATCCCCG 57.493 50.000 0.00 0.00 40.87 5.73
473 475 3.854669 CCCGCGGCCTCTTCATCT 61.855 66.667 22.85 0.00 0.00 2.90
512 514 8.189119 ACCATCATAAACCACACATAAACTTT 57.811 30.769 0.00 0.00 0.00 2.66
595 600 6.012658 TCACAACACAATTAGCCTCAAATC 57.987 37.500 0.00 0.00 0.00 2.17
604 609 7.220683 CACAATTAGCCTCAAATCCAAATAACG 59.779 37.037 0.00 0.00 0.00 3.18
669 674 5.939764 ATACACTTGCAAGACTGGATAGA 57.060 39.130 32.50 7.37 0.00 1.98
670 675 4.833478 ACACTTGCAAGACTGGATAGAT 57.167 40.909 32.50 3.08 0.00 1.98
671 676 5.939764 ACACTTGCAAGACTGGATAGATA 57.060 39.130 32.50 0.00 0.00 1.98
672 677 6.491714 ACACTTGCAAGACTGGATAGATAT 57.508 37.500 32.50 2.30 0.00 1.63
673 678 7.603180 ACACTTGCAAGACTGGATAGATATA 57.397 36.000 32.50 0.00 0.00 0.86
674 679 8.200024 ACACTTGCAAGACTGGATAGATATAT 57.800 34.615 32.50 1.12 0.00 0.86
675 680 8.654997 ACACTTGCAAGACTGGATAGATATATT 58.345 33.333 32.50 0.70 0.00 1.28
676 681 9.499479 CACTTGCAAGACTGGATAGATATATTT 57.501 33.333 32.50 0.33 0.00 1.40
699 704 5.950758 TTTTTGCATGGTAATACGTGTCT 57.049 34.783 0.00 0.00 0.00 3.41
700 705 5.539582 TTTTGCATGGTAATACGTGTCTC 57.460 39.130 0.00 0.00 0.00 3.36
701 706 3.878160 TGCATGGTAATACGTGTCTCA 57.122 42.857 0.00 0.00 0.00 3.27
702 707 4.400529 TGCATGGTAATACGTGTCTCAT 57.599 40.909 0.00 0.00 0.00 2.90
703 708 4.765273 TGCATGGTAATACGTGTCTCATT 58.235 39.130 0.00 0.00 0.00 2.57
704 709 4.808895 TGCATGGTAATACGTGTCTCATTC 59.191 41.667 0.00 0.00 0.00 2.67
705 710 4.808895 GCATGGTAATACGTGTCTCATTCA 59.191 41.667 0.00 0.00 0.00 2.57
706 711 5.466728 GCATGGTAATACGTGTCTCATTCAT 59.533 40.000 0.00 0.00 0.00 2.57
707 712 6.645003 GCATGGTAATACGTGTCTCATTCATA 59.355 38.462 0.00 0.00 0.00 2.15
708 713 7.331934 GCATGGTAATACGTGTCTCATTCATAT 59.668 37.037 0.00 0.00 0.00 1.78
709 714 8.864024 CATGGTAATACGTGTCTCATTCATATC 58.136 37.037 0.00 0.00 0.00 1.63
710 715 7.947282 TGGTAATACGTGTCTCATTCATATCA 58.053 34.615 0.00 0.00 0.00 2.15
711 716 8.585018 TGGTAATACGTGTCTCATTCATATCAT 58.415 33.333 0.00 0.00 0.00 2.45
718 723 9.770097 ACGTGTCTCATTCATATCATAAAGATT 57.230 29.630 0.00 0.00 38.19 2.40
734 739 9.701098 TCATAAAGATTAAAGTACAAGTCACGT 57.299 29.630 0.00 0.00 0.00 4.49
738 743 8.530269 AAGATTAAAGTACAAGTCACGTAAGG 57.470 34.615 0.00 0.00 46.39 2.69
739 744 7.889469 AGATTAAAGTACAAGTCACGTAAGGA 58.111 34.615 0.00 0.00 46.39 3.36
740 745 7.811713 AGATTAAAGTACAAGTCACGTAAGGAC 59.188 37.037 0.00 0.00 46.39 3.85
741 746 3.930634 AGTACAAGTCACGTAAGGACC 57.069 47.619 0.00 0.00 46.39 4.46
742 747 2.227388 AGTACAAGTCACGTAAGGACCG 59.773 50.000 0.00 0.00 46.39 4.79
743 748 1.321474 ACAAGTCACGTAAGGACCGA 58.679 50.000 1.21 0.00 46.39 4.69
744 749 1.000938 ACAAGTCACGTAAGGACCGAC 60.001 52.381 1.21 0.00 46.39 4.79
745 750 1.001048 CAAGTCACGTAAGGACCGACA 60.001 52.381 1.21 0.00 46.39 4.35
746 751 1.542492 AGTCACGTAAGGACCGACAT 58.458 50.000 1.21 0.00 46.39 3.06
747 752 1.201647 AGTCACGTAAGGACCGACATG 59.798 52.381 1.21 0.00 46.39 3.21
748 753 1.200716 GTCACGTAAGGACCGACATGA 59.799 52.381 0.00 0.00 46.39 3.07
749 754 1.200716 TCACGTAAGGACCGACATGAC 59.799 52.381 0.00 0.00 46.39 3.06
750 755 1.068125 CACGTAAGGACCGACATGACA 60.068 52.381 0.00 0.00 46.39 3.58
751 756 1.614903 ACGTAAGGACCGACATGACAA 59.385 47.619 0.00 0.00 46.39 3.18
752 757 2.036217 ACGTAAGGACCGACATGACAAA 59.964 45.455 0.00 0.00 46.39 2.83
753 758 3.061322 CGTAAGGACCGACATGACAAAA 58.939 45.455 0.00 0.00 0.00 2.44
754 759 3.120786 CGTAAGGACCGACATGACAAAAC 60.121 47.826 0.00 0.00 0.00 2.43
755 760 2.930826 AGGACCGACATGACAAAACT 57.069 45.000 0.00 0.00 0.00 2.66
756 761 2.494059 AGGACCGACATGACAAAACTG 58.506 47.619 0.00 0.00 0.00 3.16
757 762 2.104111 AGGACCGACATGACAAAACTGA 59.896 45.455 0.00 0.00 0.00 3.41
758 763 2.875933 GGACCGACATGACAAAACTGAA 59.124 45.455 0.00 0.00 0.00 3.02
759 764 3.314080 GGACCGACATGACAAAACTGAAA 59.686 43.478 0.00 0.00 0.00 2.69
760 765 4.201970 GGACCGACATGACAAAACTGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
761 766 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
762 767 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
763 768 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
764 769 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
765 770 7.017645 CCGACATGACAAAACTGAAAAGATAG 58.982 38.462 0.00 0.00 0.00 2.08
766 771 6.521133 CGACATGACAAAACTGAAAAGATAGC 59.479 38.462 0.00 0.00 0.00 2.97
767 772 7.275888 ACATGACAAAACTGAAAAGATAGCA 57.724 32.000 0.00 0.00 0.00 3.49
768 773 7.365741 ACATGACAAAACTGAAAAGATAGCAG 58.634 34.615 0.00 0.00 35.81 4.24
769 774 7.229306 ACATGACAAAACTGAAAAGATAGCAGA 59.771 33.333 0.00 0.00 33.94 4.26
770 775 7.566760 TGACAAAACTGAAAAGATAGCAGAA 57.433 32.000 0.00 0.00 33.94 3.02
771 776 7.417612 TGACAAAACTGAAAAGATAGCAGAAC 58.582 34.615 0.00 0.00 33.94 3.01
772 777 7.066887 TGACAAAACTGAAAAGATAGCAGAACA 59.933 33.333 0.00 0.00 33.94 3.18
773 778 7.945134 ACAAAACTGAAAAGATAGCAGAACAT 58.055 30.769 0.00 0.00 33.94 2.71
774 779 8.078596 ACAAAACTGAAAAGATAGCAGAACATC 58.921 33.333 0.00 0.00 33.94 3.06
775 780 7.992754 AAACTGAAAAGATAGCAGAACATCT 57.007 32.000 0.00 0.00 33.94 2.90
776 781 7.608308 AACTGAAAAGATAGCAGAACATCTC 57.392 36.000 0.00 0.00 33.94 2.75
777 782 6.945218 ACTGAAAAGATAGCAGAACATCTCT 58.055 36.000 0.00 0.00 33.94 3.10
788 793 3.924144 AGAACATCTCTGAGCTTGACAC 58.076 45.455 12.47 5.44 31.12 3.67
789 794 2.758736 ACATCTCTGAGCTTGACACC 57.241 50.000 12.47 0.00 0.00 4.16
790 795 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
791 796 2.369860 ACATCTCTGAGCTTGACACCAA 59.630 45.455 12.47 0.00 0.00 3.67
792 797 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
793 798 1.143305 CTCTGAGCTTGACACCAACG 58.857 55.000 0.00 0.00 0.00 4.10
794 799 0.880278 TCTGAGCTTGACACCAACGC 60.880 55.000 0.00 0.00 0.00 4.84
795 800 1.845809 CTGAGCTTGACACCAACGCC 61.846 60.000 0.00 0.00 31.38 5.68
796 801 2.594592 AGCTTGACACCAACGCCC 60.595 61.111 0.00 0.00 31.38 6.13
797 802 2.904866 GCTTGACACCAACGCCCA 60.905 61.111 0.00 0.00 0.00 5.36
798 803 2.268076 GCTTGACACCAACGCCCAT 61.268 57.895 0.00 0.00 0.00 4.00
799 804 1.875963 CTTGACACCAACGCCCATC 59.124 57.895 0.00 0.00 0.00 3.51
800 805 0.888736 CTTGACACCAACGCCCATCA 60.889 55.000 0.00 0.00 0.00 3.07
801 806 1.169661 TTGACACCAACGCCCATCAC 61.170 55.000 0.00 0.00 0.00 3.06
802 807 2.282180 ACACCAACGCCCATCACC 60.282 61.111 0.00 0.00 0.00 4.02
803 808 2.034066 CACCAACGCCCATCACCT 59.966 61.111 0.00 0.00 0.00 4.00
804 809 2.034066 ACCAACGCCCATCACCTG 59.966 61.111 0.00 0.00 0.00 4.00
805 810 3.443045 CCAACGCCCATCACCTGC 61.443 66.667 0.00 0.00 0.00 4.85
806 811 3.443045 CAACGCCCATCACCTGCC 61.443 66.667 0.00 0.00 0.00 4.85
807 812 3.650950 AACGCCCATCACCTGCCT 61.651 61.111 0.00 0.00 0.00 4.75
808 813 3.210012 AACGCCCATCACCTGCCTT 62.210 57.895 0.00 0.00 0.00 4.35
809 814 2.825836 CGCCCATCACCTGCCTTC 60.826 66.667 0.00 0.00 0.00 3.46
810 815 2.825836 GCCCATCACCTGCCTTCG 60.826 66.667 0.00 0.00 0.00 3.79
811 816 2.124570 CCCATCACCTGCCTTCGG 60.125 66.667 0.00 0.00 0.00 4.30
822 827 2.738521 CCTTCGGCACCACGACAG 60.739 66.667 0.00 0.00 43.37 3.51
823 828 3.414700 CTTCGGCACCACGACAGC 61.415 66.667 0.00 0.00 43.37 4.40
824 829 4.228567 TTCGGCACCACGACAGCA 62.229 61.111 0.00 0.00 43.37 4.41
825 830 4.662961 TCGGCACCACGACAGCAG 62.663 66.667 0.00 0.00 38.06 4.24
829 834 3.349006 CACCACGACAGCAGCCAC 61.349 66.667 0.00 0.00 0.00 5.01
830 835 4.626081 ACCACGACAGCAGCCACC 62.626 66.667 0.00 0.00 0.00 4.61
832 837 4.662961 CACGACAGCAGCCACCGA 62.663 66.667 5.12 0.00 0.00 4.69
833 838 3.923864 ACGACAGCAGCCACCGAA 61.924 61.111 5.12 0.00 0.00 4.30
834 839 3.114616 CGACAGCAGCCACCGAAG 61.115 66.667 0.00 0.00 0.00 3.79
835 840 2.343758 GACAGCAGCCACCGAAGA 59.656 61.111 0.00 0.00 0.00 2.87
836 841 1.301716 GACAGCAGCCACCGAAGAA 60.302 57.895 0.00 0.00 0.00 2.52
837 842 0.884704 GACAGCAGCCACCGAAGAAA 60.885 55.000 0.00 0.00 0.00 2.52
838 843 0.465460 ACAGCAGCCACCGAAGAAAA 60.465 50.000 0.00 0.00 0.00 2.29
839 844 0.239347 CAGCAGCCACCGAAGAAAAG 59.761 55.000 0.00 0.00 0.00 2.27
840 845 0.108585 AGCAGCCACCGAAGAAAAGA 59.891 50.000 0.00 0.00 0.00 2.52
841 846 0.951558 GCAGCCACCGAAGAAAAGAA 59.048 50.000 0.00 0.00 0.00 2.52
842 847 1.541588 GCAGCCACCGAAGAAAAGAAT 59.458 47.619 0.00 0.00 0.00 2.40
843 848 2.669391 GCAGCCACCGAAGAAAAGAATG 60.669 50.000 0.00 0.00 0.00 2.67
844 849 2.813754 CAGCCACCGAAGAAAAGAATGA 59.186 45.455 0.00 0.00 0.00 2.57
845 850 3.441572 CAGCCACCGAAGAAAAGAATGAT 59.558 43.478 0.00 0.00 0.00 2.45
846 851 3.441572 AGCCACCGAAGAAAAGAATGATG 59.558 43.478 0.00 0.00 0.00 3.07
847 852 3.428045 GCCACCGAAGAAAAGAATGATGG 60.428 47.826 0.00 0.00 0.00 3.51
848 853 4.009675 CCACCGAAGAAAAGAATGATGGA 58.990 43.478 0.00 0.00 0.00 3.41
849 854 4.641989 CCACCGAAGAAAAGAATGATGGAT 59.358 41.667 0.00 0.00 0.00 3.41
850 855 5.220931 CCACCGAAGAAAAGAATGATGGATC 60.221 44.000 0.00 0.00 0.00 3.36
851 856 5.355071 CACCGAAGAAAAGAATGATGGATCA 59.645 40.000 0.00 0.00 41.70 2.92
852 857 5.355350 ACCGAAGAAAAGAATGATGGATCAC 59.645 40.000 0.00 0.00 40.03 3.06
853 858 5.220931 CCGAAGAAAAGAATGATGGATCACC 60.221 44.000 0.00 0.00 40.03 4.02
854 859 5.587844 CGAAGAAAAGAATGATGGATCACCT 59.412 40.000 0.00 0.00 40.03 4.00
855 860 6.238320 CGAAGAAAAGAATGATGGATCACCTC 60.238 42.308 0.00 0.00 40.03 3.85
856 861 5.444176 AGAAAAGAATGATGGATCACCTCC 58.556 41.667 0.00 0.00 45.19 4.30
857 862 5.193325 AGAAAAGAATGATGGATCACCTCCT 59.807 40.000 0.00 0.00 45.21 3.69
858 863 4.703379 AAGAATGATGGATCACCTCCTC 57.297 45.455 0.00 0.00 45.21 3.71
859 864 3.662078 AGAATGATGGATCACCTCCTCA 58.338 45.455 0.00 0.00 45.21 3.86
860 865 4.241151 AGAATGATGGATCACCTCCTCAT 58.759 43.478 0.00 0.00 45.21 2.90
861 866 4.286549 AGAATGATGGATCACCTCCTCATC 59.713 45.833 0.00 0.00 45.21 2.92
862 867 2.333069 TGATGGATCACCTCCTCATCC 58.667 52.381 0.00 0.00 45.21 3.51
863 868 1.274728 GATGGATCACCTCCTCATCCG 59.725 57.143 0.00 0.00 45.21 4.18
864 869 0.261696 TGGATCACCTCCTCATCCGA 59.738 55.000 0.00 0.00 45.21 4.55
865 870 0.965439 GGATCACCTCCTCATCCGAG 59.035 60.000 0.00 0.00 41.29 4.63
866 871 1.698506 GATCACCTCCTCATCCGAGT 58.301 55.000 0.00 0.00 37.59 4.18
867 872 2.035632 GATCACCTCCTCATCCGAGTT 58.964 52.381 0.00 0.00 37.59 3.01
868 873 1.475403 TCACCTCCTCATCCGAGTTC 58.525 55.000 0.00 0.00 37.59 3.01
869 874 1.186200 CACCTCCTCATCCGAGTTCA 58.814 55.000 0.00 0.00 37.59 3.18
870 875 1.550524 CACCTCCTCATCCGAGTTCAA 59.449 52.381 0.00 0.00 37.59 2.69
871 876 2.169352 CACCTCCTCATCCGAGTTCAAT 59.831 50.000 0.00 0.00 37.59 2.57
872 877 2.432510 ACCTCCTCATCCGAGTTCAATC 59.567 50.000 0.00 0.00 37.59 2.67
873 878 2.544694 CCTCCTCATCCGAGTTCAATCG 60.545 54.545 0.00 0.00 42.36 3.34
874 879 2.359214 CTCCTCATCCGAGTTCAATCGA 59.641 50.000 0.00 0.00 45.56 3.59
875 880 2.099263 TCCTCATCCGAGTTCAATCGAC 59.901 50.000 0.00 0.00 45.56 4.20
876 881 2.159240 CCTCATCCGAGTTCAATCGACA 60.159 50.000 0.00 0.00 45.56 4.35
877 882 3.111838 CTCATCCGAGTTCAATCGACAG 58.888 50.000 0.00 0.00 45.56 3.51
878 883 2.159240 TCATCCGAGTTCAATCGACAGG 60.159 50.000 0.00 0.00 45.56 4.00
922 927 7.649973 CACCTAAACACGCTATAGATACTCTT 58.350 38.462 3.21 0.00 0.00 2.85
1052 1063 4.284550 GCAGGTCCAACCCCAGCA 62.285 66.667 0.00 0.00 39.75 4.41
1089 1100 1.425448 CCACCTCCTGAATATTCCCCC 59.575 57.143 12.90 0.00 0.00 5.40
1474 1494 3.430929 GCTCCCAATGTGAGTACCTACTG 60.431 52.174 0.00 0.00 36.50 2.74
1475 1495 3.769844 CTCCCAATGTGAGTACCTACTGT 59.230 47.826 0.00 0.00 36.50 3.55
1476 1496 3.513912 TCCCAATGTGAGTACCTACTGTG 59.486 47.826 0.00 0.00 36.50 3.66
1477 1497 3.262420 CCAATGTGAGTACCTACTGTGC 58.738 50.000 0.00 0.00 36.50 4.57
1478 1498 3.055819 CCAATGTGAGTACCTACTGTGCT 60.056 47.826 0.00 0.00 43.20 4.40
1479 1499 4.563580 CCAATGTGAGTACCTACTGTGCTT 60.564 45.833 0.00 0.00 40.31 3.91
1480 1500 3.660501 TGTGAGTACCTACTGTGCTTG 57.339 47.619 0.00 0.00 40.31 4.01
1481 1501 3.227614 TGTGAGTACCTACTGTGCTTGA 58.772 45.455 0.00 0.00 40.31 3.02
1482 1502 3.255888 TGTGAGTACCTACTGTGCTTGAG 59.744 47.826 0.00 0.00 40.31 3.02
1483 1503 3.256136 GTGAGTACCTACTGTGCTTGAGT 59.744 47.826 0.00 0.00 40.31 3.41
1525 1545 4.935808 GCTACAGCAAATAGTACTGTTGGT 59.064 41.667 15.98 15.98 41.78 3.67
1551 1571 0.248843 TGTGGCATGCGTATCTGTGA 59.751 50.000 12.44 0.00 0.00 3.58
1565 1585 1.085091 CTGTGAGGATCTGTGCTTGC 58.915 55.000 0.00 0.00 34.92 4.01
1767 1798 2.440147 CCAGTTGGTGGGGCATCA 59.560 61.111 0.00 0.00 43.63 3.07
1768 1799 1.000739 CCAGTTGGTGGGGCATCAT 59.999 57.895 0.00 0.00 43.63 2.45
1769 1800 0.258484 CCAGTTGGTGGGGCATCATA 59.742 55.000 0.00 0.00 43.63 2.15
1797 1828 6.253746 GCAGTAGCATATTGTTGTTTCTCTG 58.746 40.000 0.00 0.00 41.58 3.35
1829 1864 9.167311 CCACTGATCTATATTTTATGGTTAGCC 57.833 37.037 0.00 0.00 0.00 3.93
1909 1953 9.596308 TGTTATATAGCAAGGAGATACTAACCA 57.404 33.333 0.00 0.00 0.00 3.67
1987 2031 4.646040 TCCATGCTGATTTTCCAAGGTATG 59.354 41.667 0.00 0.00 0.00 2.39
1988 2032 4.365723 CATGCTGATTTTCCAAGGTATGC 58.634 43.478 0.00 0.00 0.00 3.14
1989 2033 2.760092 TGCTGATTTTCCAAGGTATGCC 59.240 45.455 0.00 0.00 0.00 4.40
1990 2034 2.101415 GCTGATTTTCCAAGGTATGCCC 59.899 50.000 0.00 0.00 34.57 5.36
1992 2036 1.681264 GATTTTCCAAGGTATGCCCCG 59.319 52.381 0.00 0.00 34.57 5.73
1994 2038 0.406361 TTTCCAAGGTATGCCCCGTT 59.594 50.000 0.00 0.00 34.57 4.44
1995 2039 0.322997 TTCCAAGGTATGCCCCGTTG 60.323 55.000 0.00 0.00 34.57 4.10
2062 2309 2.425143 TGCATTTCCTCCTGTGGATC 57.575 50.000 0.00 0.00 35.83 3.36
2168 2415 1.063183 ATCCTTAGATGCAGAGGCCC 58.937 55.000 0.00 0.00 40.13 5.80
2170 2417 1.070445 CTTAGATGCAGAGGCCCGG 59.930 63.158 0.00 0.00 40.13 5.73
2171 2418 2.388890 CTTAGATGCAGAGGCCCGGG 62.389 65.000 19.09 19.09 40.13 5.73
2172 2419 2.889521 TTAGATGCAGAGGCCCGGGA 62.890 60.000 29.31 0.00 40.13 5.14
2173 2420 4.247380 GATGCAGAGGCCCGGGAG 62.247 72.222 29.31 8.93 40.13 4.30
2174 2421 4.804420 ATGCAGAGGCCCGGGAGA 62.804 66.667 29.31 0.00 40.13 3.71
2177 2424 2.685380 CAGAGGCCCGGGAGAGTT 60.685 66.667 29.31 3.00 0.00 3.01
2178 2425 1.381327 CAGAGGCCCGGGAGAGTTA 60.381 63.158 29.31 0.00 0.00 2.24
2179 2426 0.760945 CAGAGGCCCGGGAGAGTTAT 60.761 60.000 29.31 0.00 0.00 1.89
2180 2427 0.470268 AGAGGCCCGGGAGAGTTATC 60.470 60.000 29.31 10.20 0.00 1.75
2181 2428 0.470268 GAGGCCCGGGAGAGTTATCT 60.470 60.000 29.31 7.21 38.98 1.98
2197 2444 6.738832 AGTTATCTCTTTACCGAAAAAGGC 57.261 37.500 8.87 0.00 37.13 4.35
2198 2445 6.473758 AGTTATCTCTTTACCGAAAAAGGCT 58.526 36.000 8.87 0.00 37.13 4.58
2199 2446 6.940867 AGTTATCTCTTTACCGAAAAAGGCTT 59.059 34.615 0.00 0.00 37.13 4.35
2200 2447 7.447545 AGTTATCTCTTTACCGAAAAAGGCTTT 59.552 33.333 6.68 6.68 37.13 3.51
2201 2448 5.684550 TCTCTTTACCGAAAAAGGCTTTC 57.315 39.130 13.76 0.41 37.13 2.62
2203 2450 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
2216 2463 3.703286 GCTTTCGCCCCGTTTTATATT 57.297 42.857 0.00 0.00 0.00 1.28
2217 2464 4.816786 GCTTTCGCCCCGTTTTATATTA 57.183 40.909 0.00 0.00 0.00 0.98
2218 2465 5.366829 GCTTTCGCCCCGTTTTATATTAT 57.633 39.130 0.00 0.00 0.00 1.28
2219 2466 6.484818 GCTTTCGCCCCGTTTTATATTATA 57.515 37.500 0.00 0.00 0.00 0.98
2220 2467 6.901265 GCTTTCGCCCCGTTTTATATTATAA 58.099 36.000 0.00 0.00 0.00 0.98
2221 2468 7.361894 GCTTTCGCCCCGTTTTATATTATAAA 58.638 34.615 5.01 5.01 0.00 1.40
2222 2469 7.536281 GCTTTCGCCCCGTTTTATATTATAAAG 59.464 37.037 8.47 0.00 0.00 1.85
2223 2470 6.484818 TCGCCCCGTTTTATATTATAAAGC 57.515 37.500 11.09 11.09 0.00 3.51
2224 2471 5.996513 TCGCCCCGTTTTATATTATAAAGCA 59.003 36.000 17.70 1.77 0.00 3.91
2225 2472 6.073112 TCGCCCCGTTTTATATTATAAAGCAC 60.073 38.462 17.70 10.42 0.00 4.40
2226 2473 6.293516 CGCCCCGTTTTATATTATAAAGCACA 60.294 38.462 17.70 0.93 0.00 4.57
2227 2474 7.427214 GCCCCGTTTTATATTATAAAGCACAA 58.573 34.615 17.70 0.65 0.00 3.33
2228 2475 7.593644 GCCCCGTTTTATATTATAAAGCACAAG 59.406 37.037 17.70 8.34 0.00 3.16
2229 2476 8.626526 CCCCGTTTTATATTATAAAGCACAAGT 58.373 33.333 17.70 0.00 0.00 3.16
2230 2477 9.659830 CCCGTTTTATATTATAAAGCACAAGTC 57.340 33.333 17.70 2.76 0.00 3.01
2231 2478 9.659830 CCGTTTTATATTATAAAGCACAAGTCC 57.340 33.333 17.70 0.19 0.00 3.85
2238 2485 7.759489 ATTATAAAGCACAAGTCCAAGTCAA 57.241 32.000 0.00 0.00 0.00 3.18
2239 2486 3.782889 AAAGCACAAGTCCAAGTCAAC 57.217 42.857 0.00 0.00 0.00 3.18
2240 2487 2.418368 AGCACAAGTCCAAGTCAACA 57.582 45.000 0.00 0.00 0.00 3.33
2241 2488 2.936202 AGCACAAGTCCAAGTCAACAT 58.064 42.857 0.00 0.00 0.00 2.71
2242 2489 4.085357 AGCACAAGTCCAAGTCAACATA 57.915 40.909 0.00 0.00 0.00 2.29
2243 2490 3.815401 AGCACAAGTCCAAGTCAACATAC 59.185 43.478 0.00 0.00 0.00 2.39
2244 2491 3.058224 GCACAAGTCCAAGTCAACATACC 60.058 47.826 0.00 0.00 0.00 2.73
2245 2492 4.133820 CACAAGTCCAAGTCAACATACCA 58.866 43.478 0.00 0.00 0.00 3.25
2246 2493 4.024048 CACAAGTCCAAGTCAACATACCAC 60.024 45.833 0.00 0.00 0.00 4.16
2247 2494 4.133820 CAAGTCCAAGTCAACATACCACA 58.866 43.478 0.00 0.00 0.00 4.17
2248 2495 4.431416 AGTCCAAGTCAACATACCACAA 57.569 40.909 0.00 0.00 0.00 3.33
2249 2496 4.787551 AGTCCAAGTCAACATACCACAAA 58.212 39.130 0.00 0.00 0.00 2.83
2250 2497 4.821805 AGTCCAAGTCAACATACCACAAAG 59.178 41.667 0.00 0.00 0.00 2.77
2251 2498 4.023193 GTCCAAGTCAACATACCACAAAGG 60.023 45.833 0.00 0.00 45.67 3.11
2263 2510 3.601443 CCACAAAGGTTCAACCACAAA 57.399 42.857 9.90 0.00 41.95 2.83
2264 2511 3.258228 CCACAAAGGTTCAACCACAAAC 58.742 45.455 9.90 0.00 41.95 2.93
2265 2512 2.920490 CACAAAGGTTCAACCACAAACG 59.080 45.455 9.90 0.00 41.95 3.60
2266 2513 1.923864 CAAAGGTTCAACCACAAACGC 59.076 47.619 9.90 0.00 41.95 4.84
2267 2514 1.178276 AAGGTTCAACCACAAACGCA 58.822 45.000 9.90 0.00 41.95 5.24
2268 2515 0.454196 AGGTTCAACCACAAACGCAC 59.546 50.000 9.90 0.00 41.95 5.34
2269 2516 0.171455 GGTTCAACCACAAACGCACA 59.829 50.000 0.01 0.00 38.42 4.57
2270 2517 1.264672 GTTCAACCACAAACGCACAC 58.735 50.000 0.00 0.00 0.00 3.82
2271 2518 0.881796 TTCAACCACAAACGCACACA 59.118 45.000 0.00 0.00 0.00 3.72
2272 2519 0.169230 TCAACCACAAACGCACACAC 59.831 50.000 0.00 0.00 0.00 3.82
2273 2520 0.109551 CAACCACAAACGCACACACA 60.110 50.000 0.00 0.00 0.00 3.72
2274 2521 0.109504 AACCACAAACGCACACACAC 60.110 50.000 0.00 0.00 0.00 3.82
2275 2522 1.237954 ACCACAAACGCACACACACA 61.238 50.000 0.00 0.00 0.00 3.72
2276 2523 0.796491 CCACAAACGCACACACACAC 60.796 55.000 0.00 0.00 0.00 3.82
2277 2524 0.110010 CACAAACGCACACACACACA 60.110 50.000 0.00 0.00 0.00 3.72
2278 2525 0.167908 ACAAACGCACACACACACAG 59.832 50.000 0.00 0.00 0.00 3.66
2279 2526 0.167908 CAAACGCACACACACACAGT 59.832 50.000 0.00 0.00 0.00 3.55
2280 2527 0.878416 AAACGCACACACACACAGTT 59.122 45.000 0.00 0.00 0.00 3.16
2281 2528 0.446222 AACGCACACACACACAGTTC 59.554 50.000 0.00 0.00 0.00 3.01
2282 2529 0.672091 ACGCACACACACACAGTTCA 60.672 50.000 0.00 0.00 0.00 3.18
2283 2530 0.445829 CGCACACACACACAGTTCAA 59.554 50.000 0.00 0.00 0.00 2.69
2284 2531 1.135831 CGCACACACACACAGTTCAAA 60.136 47.619 0.00 0.00 0.00 2.69
2285 2532 2.477694 CGCACACACACACAGTTCAAAT 60.478 45.455 0.00 0.00 0.00 2.32
2286 2533 3.108144 GCACACACACACAGTTCAAATC 58.892 45.455 0.00 0.00 0.00 2.17
2287 2534 3.694734 CACACACACACAGTTCAAATCC 58.305 45.455 0.00 0.00 0.00 3.01
2288 2535 3.128415 CACACACACACAGTTCAAATCCA 59.872 43.478 0.00 0.00 0.00 3.41
2289 2536 3.128589 ACACACACACAGTTCAAATCCAC 59.871 43.478 0.00 0.00 0.00 4.02
2290 2537 3.128415 CACACACACAGTTCAAATCCACA 59.872 43.478 0.00 0.00 0.00 4.17
2291 2538 3.128589 ACACACACAGTTCAAATCCACAC 59.871 43.478 0.00 0.00 0.00 3.82
2292 2539 3.128415 CACACACAGTTCAAATCCACACA 59.872 43.478 0.00 0.00 0.00 3.72
2293 2540 3.128589 ACACACAGTTCAAATCCACACAC 59.871 43.478 0.00 0.00 0.00 3.82
2294 2541 2.354510 ACACAGTTCAAATCCACACACG 59.645 45.455 0.00 0.00 0.00 4.49
2295 2542 1.333619 ACAGTTCAAATCCACACACGC 59.666 47.619 0.00 0.00 0.00 5.34
2296 2543 0.951558 AGTTCAAATCCACACACGCC 59.048 50.000 0.00 0.00 0.00 5.68
2297 2544 0.039527 GTTCAAATCCACACACGCCC 60.040 55.000 0.00 0.00 0.00 6.13
2298 2545 0.466372 TTCAAATCCACACACGCCCA 60.466 50.000 0.00 0.00 0.00 5.36
2299 2546 0.466372 TCAAATCCACACACGCCCAA 60.466 50.000 0.00 0.00 0.00 4.12
2300 2547 0.387202 CAAATCCACACACGCCCAAA 59.613 50.000 0.00 0.00 0.00 3.28
2301 2548 1.115467 AAATCCACACACGCCCAAAA 58.885 45.000 0.00 0.00 0.00 2.44
2302 2549 0.673437 AATCCACACACGCCCAAAAG 59.327 50.000 0.00 0.00 0.00 2.27
2303 2550 1.178534 ATCCACACACGCCCAAAAGG 61.179 55.000 0.00 0.00 39.47 3.11
2304 2551 2.727544 CACACACGCCCAAAAGGG 59.272 61.111 0.00 0.00 35.41 3.95
2305 2552 2.124693 CACACACGCCCAAAAGGGT 61.125 57.895 2.03 0.00 35.41 4.34
2306 2553 1.380650 ACACACGCCCAAAAGGGTT 60.381 52.632 2.03 0.00 35.41 4.11
2307 2554 0.106619 ACACACGCCCAAAAGGGTTA 60.107 50.000 2.03 0.00 35.41 2.85
2308 2555 1.033574 CACACGCCCAAAAGGGTTAA 58.966 50.000 2.03 0.00 35.41 2.01
2309 2556 1.616374 CACACGCCCAAAAGGGTTAAT 59.384 47.619 2.03 0.00 35.41 1.40
2310 2557 1.616374 ACACGCCCAAAAGGGTTAATG 59.384 47.619 2.03 0.00 35.41 1.90
2311 2558 0.606096 ACGCCCAAAAGGGTTAATGC 59.394 50.000 2.03 0.00 35.41 3.56
2312 2559 0.894835 CGCCCAAAAGGGTTAATGCT 59.105 50.000 2.03 0.00 35.41 3.79
2313 2560 1.404047 CGCCCAAAAGGGTTAATGCTG 60.404 52.381 2.03 0.00 35.41 4.41
2314 2561 1.899142 GCCCAAAAGGGTTAATGCTGA 59.101 47.619 2.03 0.00 35.41 4.26
2315 2562 2.094026 GCCCAAAAGGGTTAATGCTGAG 60.094 50.000 2.03 0.00 35.41 3.35
2316 2563 2.497273 CCCAAAAGGGTTAATGCTGAGG 59.503 50.000 0.00 0.00 33.40 3.86
2317 2564 2.497273 CCAAAAGGGTTAATGCTGAGGG 59.503 50.000 0.00 0.00 0.00 4.30
2318 2565 1.852633 AAAGGGTTAATGCTGAGGGC 58.147 50.000 0.00 0.00 42.22 5.19
2328 2575 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
2329 2576 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
2330 2577 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
2331 2578 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
2332 2579 0.536006 GAGGGCACAGCTCAACAAGT 60.536 55.000 0.00 0.00 0.00 3.16
2333 2580 0.536006 AGGGCACAGCTCAACAAGTC 60.536 55.000 0.00 0.00 0.00 3.01
2334 2581 0.819259 GGGCACAGCTCAACAAGTCA 60.819 55.000 0.00 0.00 0.00 3.41
2335 2582 1.242076 GGCACAGCTCAACAAGTCAT 58.758 50.000 0.00 0.00 0.00 3.06
2343 2590 5.221521 ACAGCTCAACAAGTCATGAGAGTTA 60.222 40.000 0.00 0.00 44.64 2.24
2403 2658 3.842869 CCACAGGGACTCTAACTGC 57.157 57.895 0.00 0.00 34.60 4.40
2447 2844 6.953189 GCTGTGTTGTGTTGTTAAAATGAAAC 59.047 34.615 0.00 0.00 0.00 2.78
2448 2845 7.148656 GCTGTGTTGTGTTGTTAAAATGAAACT 60.149 33.333 0.00 0.00 0.00 2.66
2589 2986 1.267121 AGCTACCTTCCGAAAGCTGA 58.733 50.000 5.22 0.00 43.46 4.26
2642 3040 2.902608 ACAGTTAGGACCTCCACATCA 58.097 47.619 0.00 0.00 38.89 3.07
2661 3059 9.613428 CCACATCATACCTTTAATTAGACAGAA 57.387 33.333 0.00 0.00 0.00 3.02
2677 3075 5.704888 AGACAGAAGTATGAGTATATGCGC 58.295 41.667 0.00 0.00 0.00 6.09
2807 3258 4.654091 TCATCGATGACTCAACATGCTA 57.346 40.909 23.99 0.00 0.00 3.49
2832 3285 1.280133 TGTCAAGCTATTGCAGAGGCT 59.720 47.619 1.12 4.01 42.74 4.58
2865 3318 1.593006 CGGTGACTCGCCATCATTTAC 59.407 52.381 9.35 0.00 32.88 2.01
2867 3320 1.940613 GTGACTCGCCATCATTTACCC 59.059 52.381 0.00 0.00 0.00 3.69
2868 3321 1.217882 GACTCGCCATCATTTACCCG 58.782 55.000 0.00 0.00 0.00 5.28
2878 3331 4.321601 CCATCATTTACCCGCAGTTTCAAA 60.322 41.667 0.00 0.00 0.00 2.69
2879 3332 4.231718 TCATTTACCCGCAGTTTCAAAC 57.768 40.909 0.00 0.00 0.00 2.93
2892 3349 4.682860 CAGTTTCAAACAGCTATGCCAAAG 59.317 41.667 2.41 0.00 0.00 2.77
2950 3407 2.969950 TGCGGGTTATAGCCTCACTATT 59.030 45.455 5.52 0.00 41.91 1.73
2972 3429 7.894376 ATTTTGCAACCTTATCAGACAATTG 57.106 32.000 3.24 3.24 0.00 2.32
3080 3537 4.531659 ATTGCGAGAAGTAATTTACGGC 57.468 40.909 1.03 2.85 30.84 5.68
3086 3543 5.188194 CGAGAAGTAATTTACGGCAATTCG 58.812 41.667 1.03 3.70 0.00 3.34
3102 3559 4.793071 CAATTCGCAGTGTGTTTTCCATA 58.207 39.130 3.13 0.00 0.00 2.74
3161 3619 7.045126 TCCAACAAAATTAACCGAGAACATT 57.955 32.000 0.00 0.00 0.00 2.71
3227 3698 6.405953 GCAGGTTATACTACAGATGCGGATAT 60.406 42.308 0.00 0.00 0.00 1.63
3446 3917 1.666011 GGCTGTTGGTGTCTCGAGA 59.334 57.895 12.08 12.08 0.00 4.04
3453 3924 2.996621 GTTGGTGTCTCGAGATTGAAGG 59.003 50.000 19.90 0.00 0.00 3.46
3792 4776 6.985059 ACTATAACCGACTTGAGCTTATTTCC 59.015 38.462 0.00 0.00 0.00 3.13
3802 4786 4.794169 TGAGCTTATTTCCTCGCAAAAAC 58.206 39.130 0.00 0.00 0.00 2.43
3804 4788 4.798574 AGCTTATTTCCTCGCAAAAACAG 58.201 39.130 0.00 0.00 0.00 3.16
3807 4791 5.343325 GCTTATTTCCTCGCAAAAACAGAAG 59.657 40.000 0.00 0.00 0.00 2.85
3879 4867 3.677648 GCAGTGCAACAGGCCTGG 61.678 66.667 35.42 20.34 43.89 4.45
3893 4881 0.390998 GCCTGGTGTCTCTGAAGCTC 60.391 60.000 0.00 0.00 0.00 4.09
3896 4884 1.446966 GGTGTCTCTGAAGCTCGCC 60.447 63.158 0.00 0.00 0.00 5.54
3914 4946 4.072131 TCGCCCTTAATTGCTCCATATTC 58.928 43.478 0.00 0.00 0.00 1.75
4051 5086 2.363306 ATCACACCTGCTGTTTTCCA 57.637 45.000 0.00 0.00 0.00 3.53
4122 5157 7.473735 TCCAAAGGAACACAAATAATGCATA 57.526 32.000 0.00 0.00 0.00 3.14
4405 5440 5.413833 CCGTCAGTTACTGTCTACTTTCCTA 59.586 44.000 12.41 0.00 32.61 2.94
4672 5713 3.263425 AGTGTCCCAGACGACCATATTTT 59.737 43.478 0.00 0.00 34.95 1.82
4694 5735 1.062880 GAGAGTTGCTCTCGGTAGTCG 59.937 57.143 9.96 0.00 45.76 4.18
4767 5812 9.393512 CTGTCAATCTATTTCTTTTCTGATCCT 57.606 33.333 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.861727 AGTAACCCTTGTAACTCGTGATTT 58.138 37.500 0.00 0.00 0.00 2.17
3 4 6.379133 TGATAGTAACCCTTGTAACTCGTGAT 59.621 38.462 0.00 0.00 0.00 3.06
4 5 5.711506 TGATAGTAACCCTTGTAACTCGTGA 59.288 40.000 0.00 0.00 0.00 4.35
5 6 5.957798 TGATAGTAACCCTTGTAACTCGTG 58.042 41.667 0.00 0.00 0.00 4.35
6 7 5.126707 CCTGATAGTAACCCTTGTAACTCGT 59.873 44.000 0.00 0.00 0.00 4.18
7 8 5.126707 ACCTGATAGTAACCCTTGTAACTCG 59.873 44.000 0.00 0.00 0.00 4.18
8 9 6.541934 ACCTGATAGTAACCCTTGTAACTC 57.458 41.667 0.00 0.00 0.00 3.01
9 10 6.947376 AACCTGATAGTAACCCTTGTAACT 57.053 37.500 0.00 0.00 0.00 2.24
10 11 7.845037 ACTAACCTGATAGTAACCCTTGTAAC 58.155 38.462 0.00 0.00 34.40 2.50
11 12 7.897565 AGACTAACCTGATAGTAACCCTTGTAA 59.102 37.037 0.00 0.00 36.28 2.41
12 13 7.416731 AGACTAACCTGATAGTAACCCTTGTA 58.583 38.462 0.00 0.00 36.28 2.41
13 14 6.262207 AGACTAACCTGATAGTAACCCTTGT 58.738 40.000 0.00 0.00 36.28 3.16
14 15 6.793505 AGACTAACCTGATAGTAACCCTTG 57.206 41.667 0.00 0.00 36.28 3.61
15 16 7.809880 AAAGACTAACCTGATAGTAACCCTT 57.190 36.000 0.00 0.00 36.28 3.95
16 17 7.809880 AAAAGACTAACCTGATAGTAACCCT 57.190 36.000 0.00 0.00 36.28 4.34
17 18 8.202811 CCTAAAAGACTAACCTGATAGTAACCC 58.797 40.741 0.00 0.00 36.28 4.11
18 19 8.202811 CCCTAAAAGACTAACCTGATAGTAACC 58.797 40.741 0.00 0.00 36.28 2.85
19 20 8.975295 TCCCTAAAAGACTAACCTGATAGTAAC 58.025 37.037 0.00 0.00 36.28 2.50
20 21 9.551339 TTCCCTAAAAGACTAACCTGATAGTAA 57.449 33.333 0.00 0.00 36.28 2.24
21 22 8.975295 GTTCCCTAAAAGACTAACCTGATAGTA 58.025 37.037 0.00 0.00 36.28 1.82
22 23 7.456902 TGTTCCCTAAAAGACTAACCTGATAGT 59.543 37.037 0.00 0.00 38.81 2.12
23 24 7.764901 GTGTTCCCTAAAAGACTAACCTGATAG 59.235 40.741 0.00 0.00 0.00 2.08
24 25 7.236019 TGTGTTCCCTAAAAGACTAACCTGATA 59.764 37.037 0.00 0.00 0.00 2.15
25 26 6.043938 TGTGTTCCCTAAAAGACTAACCTGAT 59.956 38.462 0.00 0.00 0.00 2.90
26 27 5.367352 TGTGTTCCCTAAAAGACTAACCTGA 59.633 40.000 0.00 0.00 0.00 3.86
27 28 5.617252 TGTGTTCCCTAAAAGACTAACCTG 58.383 41.667 0.00 0.00 0.00 4.00
28 29 5.899631 TGTGTTCCCTAAAAGACTAACCT 57.100 39.130 0.00 0.00 0.00 3.50
29 30 5.414765 CCATGTGTTCCCTAAAAGACTAACC 59.585 44.000 0.00 0.00 0.00 2.85
30 31 6.235664 TCCATGTGTTCCCTAAAAGACTAAC 58.764 40.000 0.00 0.00 0.00 2.34
31 32 6.442541 TCCATGTGTTCCCTAAAAGACTAA 57.557 37.500 0.00 0.00 0.00 2.24
32 33 6.183361 TGTTCCATGTGTTCCCTAAAAGACTA 60.183 38.462 0.00 0.00 0.00 2.59
33 34 4.993705 TCCATGTGTTCCCTAAAAGACT 57.006 40.909 0.00 0.00 0.00 3.24
34 35 4.825085 TGTTCCATGTGTTCCCTAAAAGAC 59.175 41.667 0.00 0.00 0.00 3.01
35 36 5.055265 TGTTCCATGTGTTCCCTAAAAGA 57.945 39.130 0.00 0.00 0.00 2.52
36 37 4.827284 ACTGTTCCATGTGTTCCCTAAAAG 59.173 41.667 0.00 0.00 0.00 2.27
37 38 4.798882 ACTGTTCCATGTGTTCCCTAAAA 58.201 39.130 0.00 0.00 0.00 1.52
38 39 4.447138 ACTGTTCCATGTGTTCCCTAAA 57.553 40.909 0.00 0.00 0.00 1.85
39 40 4.595781 AGTACTGTTCCATGTGTTCCCTAA 59.404 41.667 0.00 0.00 0.00 2.69
40 41 4.164981 AGTACTGTTCCATGTGTTCCCTA 58.835 43.478 0.00 0.00 0.00 3.53
41 42 2.979678 AGTACTGTTCCATGTGTTCCCT 59.020 45.455 0.00 0.00 0.00 4.20
42 43 3.418684 AGTACTGTTCCATGTGTTCCC 57.581 47.619 0.00 0.00 0.00 3.97
43 44 4.213482 GTGAAGTACTGTTCCATGTGTTCC 59.787 45.833 0.00 0.00 0.00 3.62
44 45 4.814234 TGTGAAGTACTGTTCCATGTGTTC 59.186 41.667 0.00 0.00 0.00 3.18
45 46 4.574828 GTGTGAAGTACTGTTCCATGTGTT 59.425 41.667 0.00 0.00 0.00 3.32
46 47 4.127171 GTGTGAAGTACTGTTCCATGTGT 58.873 43.478 0.00 0.00 0.00 3.72
47 48 4.126437 TGTGTGAAGTACTGTTCCATGTG 58.874 43.478 0.00 0.00 0.00 3.21
53 54 6.119144 ACAACATTGTGTGAAGTACTGTTC 57.881 37.500 0.00 0.00 40.49 3.18
58 59 5.804979 AGCAAAACAACATTGTGTGAAGTAC 59.195 36.000 11.13 0.00 41.31 2.73
64 65 2.535166 CGGAGCAAAACAACATTGTGTG 59.465 45.455 0.00 1.65 41.31 3.82
65 66 2.165437 ACGGAGCAAAACAACATTGTGT 59.835 40.909 0.00 0.00 41.31 3.72
66 67 2.535166 CACGGAGCAAAACAACATTGTG 59.465 45.455 0.00 0.00 41.31 3.33
67 68 2.481104 CCACGGAGCAAAACAACATTGT 60.481 45.455 0.00 0.00 44.72 2.71
68 69 2.126467 CCACGGAGCAAAACAACATTG 58.874 47.619 0.00 0.00 0.00 2.82
71 72 1.135257 CAACCACGGAGCAAAACAACA 60.135 47.619 0.00 0.00 0.00 3.33
99 100 0.742505 TATAACAGTGTCTCGGCCCG 59.257 55.000 0.00 0.00 0.00 6.13
105 106 4.130118 CAGGGCCATTATAACAGTGTCTC 58.870 47.826 6.18 0.00 0.00 3.36
107 108 3.886123 ACAGGGCCATTATAACAGTGTC 58.114 45.455 6.18 0.00 0.00 3.67
120 121 0.767998 TCACATACACAACAGGGCCA 59.232 50.000 6.18 0.00 0.00 5.36
129 130 5.589855 CCAAAATCTATGGCTCACATACACA 59.410 40.000 0.00 0.00 41.03 3.72
162 163 2.503920 ACAGTTATGCGATCCCGTAC 57.496 50.000 0.00 0.00 38.24 3.67
165 166 2.736721 CCAATACAGTTATGCGATCCCG 59.263 50.000 0.00 0.00 39.16 5.14
171 172 2.677836 ACAGTGCCAATACAGTTATGCG 59.322 45.455 0.00 0.00 0.00 4.73
178 179 8.892723 TGAAAGAAATATACAGTGCCAATACAG 58.107 33.333 0.00 0.00 0.00 2.74
183 184 9.066892 GGATATGAAAGAAATATACAGTGCCAA 57.933 33.333 0.00 0.00 0.00 4.52
184 185 8.439971 AGGATATGAAAGAAATATACAGTGCCA 58.560 33.333 0.00 0.00 0.00 4.92
185 186 8.854614 AGGATATGAAAGAAATATACAGTGCC 57.145 34.615 0.00 0.00 0.00 5.01
229 230 6.693626 GGGCTGGAATACTGCACAATTGTG 62.694 50.000 30.20 30.20 45.76 3.33
256 257 0.179086 CCAAAACCGCAAGTGGCTTT 60.179 50.000 0.00 0.00 41.67 3.51
269 270 3.056821 GGAGGACATACAAAGGCCAAAAC 60.057 47.826 5.01 0.00 0.00 2.43
273 274 0.623723 GGGAGGACATACAAAGGCCA 59.376 55.000 5.01 0.00 0.00 5.36
297 298 2.683933 GAGGAAGCCGAGGTGGGA 60.684 66.667 0.00 0.00 38.63 4.37
298 299 3.787001 GGAGGAAGCCGAGGTGGG 61.787 72.222 0.00 0.00 38.63 4.61
379 381 8.198109 ACAATACCTACCTATGATCGATTATGC 58.802 37.037 12.62 0.00 0.00 3.14
391 393 6.100714 CCCTTTGGTGTACAATACCTACCTAT 59.899 42.308 0.00 0.00 39.21 2.57
433 435 6.183361 GGGGATTCCTCCTTTTTGAAGAAAAA 60.183 38.462 2.01 0.00 41.74 1.94
434 436 5.306937 GGGGATTCCTCCTTTTTGAAGAAAA 59.693 40.000 2.01 0.00 41.74 2.29
441 443 0.817654 GCGGGGATTCCTCCTTTTTG 59.182 55.000 2.01 0.00 41.74 2.44
442 444 0.679960 CGCGGGGATTCCTCCTTTTT 60.680 55.000 0.00 0.00 41.74 1.94
443 445 1.077716 CGCGGGGATTCCTCCTTTT 60.078 57.895 0.00 0.00 41.74 2.27
455 457 4.918201 GATGAAGAGGCCGCGGGG 62.918 72.222 29.38 15.40 0.00 5.73
459 461 1.663074 CGCTAGATGAAGAGGCCGC 60.663 63.158 0.00 0.00 0.00 6.53
473 475 1.338579 TGATGGTTGTGTGCATCGCTA 60.339 47.619 0.00 0.00 0.00 4.26
595 600 2.417239 ACCGTATGTGTGCGTTATTTGG 59.583 45.455 0.00 0.00 0.00 3.28
604 609 1.068474 GTGACTGACCGTATGTGTGC 58.932 55.000 0.00 0.00 0.00 4.57
639 644 2.415168 TCTTGCAAGTGTATAAGCGCAC 59.585 45.455 25.19 0.00 35.98 5.34
648 653 5.939764 ATCTATCCAGTCTTGCAAGTGTA 57.060 39.130 25.19 5.59 0.00 2.90
677 682 5.470437 TGAGACACGTATTACCATGCAAAAA 59.530 36.000 0.00 0.00 0.00 1.94
678 683 4.998033 TGAGACACGTATTACCATGCAAAA 59.002 37.500 0.00 0.00 0.00 2.44
679 684 4.570930 TGAGACACGTATTACCATGCAAA 58.429 39.130 0.00 0.00 0.00 3.68
680 685 4.195225 TGAGACACGTATTACCATGCAA 57.805 40.909 0.00 0.00 0.00 4.08
681 686 3.878160 TGAGACACGTATTACCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
682 687 4.808895 TGAATGAGACACGTATTACCATGC 59.191 41.667 0.00 0.00 0.00 4.06
683 688 8.763049 ATATGAATGAGACACGTATTACCATG 57.237 34.615 0.00 0.00 0.00 3.66
684 689 8.585018 TGATATGAATGAGACACGTATTACCAT 58.415 33.333 0.00 0.00 0.00 3.55
685 690 7.947282 TGATATGAATGAGACACGTATTACCA 58.053 34.615 0.00 0.00 0.00 3.25
686 691 8.988064 ATGATATGAATGAGACACGTATTACC 57.012 34.615 0.00 0.00 0.00 2.85
692 697 9.770097 AATCTTTATGATATGAATGAGACACGT 57.230 29.630 0.00 0.00 34.45 4.49
708 713 9.701098 ACGTGACTTGTACTTTAATCTTTATGA 57.299 29.630 0.00 0.00 0.00 2.15
712 717 8.985805 CCTTACGTGACTTGTACTTTAATCTTT 58.014 33.333 0.00 0.00 0.00 2.52
713 718 8.362639 TCCTTACGTGACTTGTACTTTAATCTT 58.637 33.333 0.00 0.00 0.00 2.40
714 719 7.811713 GTCCTTACGTGACTTGTACTTTAATCT 59.188 37.037 0.00 0.00 0.00 2.40
715 720 7.062722 GGTCCTTACGTGACTTGTACTTTAATC 59.937 40.741 0.00 0.00 33.22 1.75
716 721 6.870439 GGTCCTTACGTGACTTGTACTTTAAT 59.130 38.462 0.00 0.00 33.22 1.40
717 722 6.215845 GGTCCTTACGTGACTTGTACTTTAA 58.784 40.000 0.00 0.00 33.22 1.52
718 723 5.562696 CGGTCCTTACGTGACTTGTACTTTA 60.563 44.000 0.00 0.00 33.22 1.85
719 724 4.625028 GGTCCTTACGTGACTTGTACTTT 58.375 43.478 0.00 0.00 33.22 2.66
720 725 3.304928 CGGTCCTTACGTGACTTGTACTT 60.305 47.826 0.00 0.00 33.22 2.24
721 726 2.227388 CGGTCCTTACGTGACTTGTACT 59.773 50.000 0.00 0.00 33.22 2.73
722 727 2.226437 TCGGTCCTTACGTGACTTGTAC 59.774 50.000 0.00 0.00 33.22 2.90
723 728 2.226437 GTCGGTCCTTACGTGACTTGTA 59.774 50.000 0.00 0.00 32.11 2.41
724 729 1.000938 GTCGGTCCTTACGTGACTTGT 60.001 52.381 0.00 0.00 32.11 3.16
725 730 1.001048 TGTCGGTCCTTACGTGACTTG 60.001 52.381 0.00 0.00 34.50 3.16
726 731 1.321474 TGTCGGTCCTTACGTGACTT 58.679 50.000 0.00 0.00 34.50 3.01
727 732 1.201647 CATGTCGGTCCTTACGTGACT 59.798 52.381 0.00 0.00 35.11 3.41
728 733 1.200716 TCATGTCGGTCCTTACGTGAC 59.799 52.381 0.00 0.00 36.86 3.67
729 734 1.200716 GTCATGTCGGTCCTTACGTGA 59.799 52.381 0.00 10.56 38.87 4.35
730 735 1.068125 TGTCATGTCGGTCCTTACGTG 60.068 52.381 0.00 6.98 34.57 4.49
731 736 1.250328 TGTCATGTCGGTCCTTACGT 58.750 50.000 0.00 0.00 0.00 3.57
732 737 2.357327 TTGTCATGTCGGTCCTTACG 57.643 50.000 0.00 0.00 0.00 3.18
733 738 4.062991 AGTTTTGTCATGTCGGTCCTTAC 58.937 43.478 0.00 0.00 0.00 2.34
734 739 4.062293 CAGTTTTGTCATGTCGGTCCTTA 58.938 43.478 0.00 0.00 0.00 2.69
735 740 2.878406 CAGTTTTGTCATGTCGGTCCTT 59.122 45.455 0.00 0.00 0.00 3.36
736 741 2.104111 TCAGTTTTGTCATGTCGGTCCT 59.896 45.455 0.00 0.00 0.00 3.85
737 742 2.489971 TCAGTTTTGTCATGTCGGTCC 58.510 47.619 0.00 0.00 0.00 4.46
738 743 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
739 744 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
740 745 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
741 746 6.521133 GCTATCTTTTCAGTTTTGTCATGTCG 59.479 38.462 0.00 0.00 0.00 4.35
742 747 7.362662 TGCTATCTTTTCAGTTTTGTCATGTC 58.637 34.615 0.00 0.00 0.00 3.06
743 748 7.229306 TCTGCTATCTTTTCAGTTTTGTCATGT 59.771 33.333 0.00 0.00 0.00 3.21
744 749 7.587629 TCTGCTATCTTTTCAGTTTTGTCATG 58.412 34.615 0.00 0.00 0.00 3.07
745 750 7.750229 TCTGCTATCTTTTCAGTTTTGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
746 751 7.066887 TGTTCTGCTATCTTTTCAGTTTTGTCA 59.933 33.333 0.00 0.00 0.00 3.58
747 752 7.417612 TGTTCTGCTATCTTTTCAGTTTTGTC 58.582 34.615 0.00 0.00 0.00 3.18
748 753 7.333528 TGTTCTGCTATCTTTTCAGTTTTGT 57.666 32.000 0.00 0.00 0.00 2.83
749 754 8.295288 AGATGTTCTGCTATCTTTTCAGTTTTG 58.705 33.333 0.00 0.00 29.64 2.44
750 755 8.401490 AGATGTTCTGCTATCTTTTCAGTTTT 57.599 30.769 0.00 0.00 29.64 2.43
751 756 7.882271 AGAGATGTTCTGCTATCTTTTCAGTTT 59.118 33.333 0.00 0.00 33.97 2.66
752 757 7.333921 CAGAGATGTTCTGCTATCTTTTCAGTT 59.666 37.037 0.00 0.00 46.30 3.16
753 758 6.817641 CAGAGATGTTCTGCTATCTTTTCAGT 59.182 38.462 0.00 0.00 46.30 3.41
754 759 7.236674 CAGAGATGTTCTGCTATCTTTTCAG 57.763 40.000 0.00 0.00 46.30 3.02
767 772 3.306641 GGTGTCAAGCTCAGAGATGTTCT 60.307 47.826 0.00 0.00 36.25 3.01
768 773 2.999355 GGTGTCAAGCTCAGAGATGTTC 59.001 50.000 0.00 0.00 0.00 3.18
769 774 2.369860 TGGTGTCAAGCTCAGAGATGTT 59.630 45.455 0.00 0.00 0.00 2.71
770 775 1.973515 TGGTGTCAAGCTCAGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
771 776 2.740981 GTTGGTGTCAAGCTCAGAGATG 59.259 50.000 0.00 0.00 32.92 2.90
772 777 2.611473 CGTTGGTGTCAAGCTCAGAGAT 60.611 50.000 0.00 0.00 32.92 2.75
773 778 1.269778 CGTTGGTGTCAAGCTCAGAGA 60.270 52.381 0.00 0.00 32.92 3.10
774 779 1.143305 CGTTGGTGTCAAGCTCAGAG 58.857 55.000 0.00 0.00 32.92 3.35
775 780 0.880278 GCGTTGGTGTCAAGCTCAGA 60.880 55.000 0.00 0.00 32.92 3.27
776 781 1.571460 GCGTTGGTGTCAAGCTCAG 59.429 57.895 0.00 0.00 32.92 3.35
777 782 1.891919 GGCGTTGGTGTCAAGCTCA 60.892 57.895 0.00 0.00 32.92 4.26
778 783 2.617274 GGGCGTTGGTGTCAAGCTC 61.617 63.158 0.00 0.00 32.92 4.09
779 784 2.594592 GGGCGTTGGTGTCAAGCT 60.595 61.111 0.00 0.00 32.92 3.74
780 785 2.200170 GATGGGCGTTGGTGTCAAGC 62.200 60.000 0.00 0.00 32.92 4.01
781 786 0.888736 TGATGGGCGTTGGTGTCAAG 60.889 55.000 0.00 0.00 32.92 3.02
782 787 1.149401 TGATGGGCGTTGGTGTCAA 59.851 52.632 0.00 0.00 0.00 3.18
783 788 1.599518 GTGATGGGCGTTGGTGTCA 60.600 57.895 0.00 0.00 0.00 3.58
784 789 2.332654 GGTGATGGGCGTTGGTGTC 61.333 63.158 0.00 0.00 0.00 3.67
785 790 2.282180 GGTGATGGGCGTTGGTGT 60.282 61.111 0.00 0.00 0.00 4.16
786 791 2.034066 AGGTGATGGGCGTTGGTG 59.966 61.111 0.00 0.00 0.00 4.17
787 792 2.034066 CAGGTGATGGGCGTTGGT 59.966 61.111 0.00 0.00 0.00 3.67
788 793 3.443045 GCAGGTGATGGGCGTTGG 61.443 66.667 0.00 0.00 0.00 3.77
789 794 3.443045 GGCAGGTGATGGGCGTTG 61.443 66.667 0.00 0.00 0.00 4.10
790 795 3.210012 AAGGCAGGTGATGGGCGTT 62.210 57.895 0.00 0.00 34.32 4.84
791 796 3.628646 GAAGGCAGGTGATGGGCGT 62.629 63.158 0.00 0.00 34.32 5.68
792 797 2.825836 GAAGGCAGGTGATGGGCG 60.826 66.667 0.00 0.00 34.32 6.13
793 798 2.825836 CGAAGGCAGGTGATGGGC 60.826 66.667 0.00 0.00 0.00 5.36
794 799 2.124570 CCGAAGGCAGGTGATGGG 60.125 66.667 0.00 0.00 46.14 4.00
806 811 3.414700 GCTGTCGTGGTGCCGAAG 61.415 66.667 0.00 0.00 38.80 3.79
807 812 4.228567 TGCTGTCGTGGTGCCGAA 62.229 61.111 0.00 0.00 38.80 4.30
808 813 4.662961 CTGCTGTCGTGGTGCCGA 62.663 66.667 0.00 0.00 33.79 5.54
812 817 3.349006 GTGGCTGCTGTCGTGGTG 61.349 66.667 0.00 0.00 0.00 4.17
813 818 4.626081 GGTGGCTGCTGTCGTGGT 62.626 66.667 0.00 0.00 0.00 4.16
815 820 4.662961 TCGGTGGCTGCTGTCGTG 62.663 66.667 0.00 0.00 0.00 4.35
816 821 3.865929 CTTCGGTGGCTGCTGTCGT 62.866 63.158 0.00 0.00 0.00 4.34
817 822 3.114616 CTTCGGTGGCTGCTGTCG 61.115 66.667 0.00 1.21 0.00 4.35
818 823 0.884704 TTTCTTCGGTGGCTGCTGTC 60.885 55.000 0.00 0.00 0.00 3.51
819 824 0.465460 TTTTCTTCGGTGGCTGCTGT 60.465 50.000 0.00 0.00 0.00 4.40
820 825 0.239347 CTTTTCTTCGGTGGCTGCTG 59.761 55.000 0.00 0.00 0.00 4.41
821 826 0.108585 TCTTTTCTTCGGTGGCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
822 827 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
823 828 2.813754 TCATTCTTTTCTTCGGTGGCTG 59.186 45.455 0.00 0.00 0.00 4.85
824 829 3.140325 TCATTCTTTTCTTCGGTGGCT 57.860 42.857 0.00 0.00 0.00 4.75
825 830 3.428045 CCATCATTCTTTTCTTCGGTGGC 60.428 47.826 0.00 0.00 0.00 5.01
826 831 4.009675 TCCATCATTCTTTTCTTCGGTGG 58.990 43.478 0.00 0.00 0.00 4.61
827 832 5.355071 TGATCCATCATTCTTTTCTTCGGTG 59.645 40.000 0.00 0.00 0.00 4.94
828 833 5.355350 GTGATCCATCATTCTTTTCTTCGGT 59.645 40.000 0.00 0.00 39.30 4.69
829 834 5.220931 GGTGATCCATCATTCTTTTCTTCGG 60.221 44.000 0.00 0.00 39.30 4.30
830 835 5.587844 AGGTGATCCATCATTCTTTTCTTCG 59.412 40.000 0.00 0.00 39.30 3.79
831 836 7.025485 GAGGTGATCCATCATTCTTTTCTTC 57.975 40.000 0.00 0.00 39.30 2.87
856 861 8.170444 TATCCTGTCGATTGAACTCGGATGAG 62.170 46.154 11.22 0.00 39.10 2.90
857 862 2.159240 CCTGTCGATTGAACTCGGATGA 60.159 50.000 0.00 0.00 39.13 2.92
858 863 2.159240 TCCTGTCGATTGAACTCGGATG 60.159 50.000 0.00 0.00 39.13 3.51
859 864 2.100197 TCCTGTCGATTGAACTCGGAT 58.900 47.619 0.00 0.00 39.13 4.18
860 865 1.541379 TCCTGTCGATTGAACTCGGA 58.459 50.000 0.00 0.00 39.13 4.55
861 866 2.586258 ATCCTGTCGATTGAACTCGG 57.414 50.000 0.00 0.00 39.13 4.63
862 867 4.862574 TGTTTATCCTGTCGATTGAACTCG 59.137 41.667 0.00 0.00 39.99 4.18
863 868 6.721571 TTGTTTATCCTGTCGATTGAACTC 57.278 37.500 0.00 0.00 31.79 3.01
864 869 7.148239 GGAATTGTTTATCCTGTCGATTGAACT 60.148 37.037 0.00 0.00 31.79 3.01
865 870 6.967199 GGAATTGTTTATCCTGTCGATTGAAC 59.033 38.462 0.00 0.00 32.75 3.18
866 871 6.094881 GGGAATTGTTTATCCTGTCGATTGAA 59.905 38.462 0.00 0.00 35.95 2.69
867 872 5.588648 GGGAATTGTTTATCCTGTCGATTGA 59.411 40.000 0.00 0.00 35.95 2.57
868 873 5.590259 AGGGAATTGTTTATCCTGTCGATTG 59.410 40.000 0.00 0.00 35.95 2.67
869 874 5.755849 AGGGAATTGTTTATCCTGTCGATT 58.244 37.500 0.00 0.00 35.95 3.34
870 875 5.373812 AGGGAATTGTTTATCCTGTCGAT 57.626 39.130 0.00 0.00 35.95 3.59
871 876 4.837093 AGGGAATTGTTTATCCTGTCGA 57.163 40.909 0.00 0.00 35.95 4.20
872 877 5.897377 AAAGGGAATTGTTTATCCTGTCG 57.103 39.130 0.00 0.00 35.95 4.35
873 878 5.869344 GCAAAAGGGAATTGTTTATCCTGTC 59.131 40.000 0.00 0.00 35.95 3.51
874 879 5.306678 TGCAAAAGGGAATTGTTTATCCTGT 59.693 36.000 0.00 0.00 35.95 4.00
875 880 5.639082 GTGCAAAAGGGAATTGTTTATCCTG 59.361 40.000 0.00 0.00 35.95 3.86
876 881 5.279960 GGTGCAAAAGGGAATTGTTTATCCT 60.280 40.000 0.00 0.00 35.95 3.24
877 882 4.935205 GGTGCAAAAGGGAATTGTTTATCC 59.065 41.667 0.00 0.00 34.85 2.59
878 883 5.793817 AGGTGCAAAAGGGAATTGTTTATC 58.206 37.500 0.00 0.00 0.00 1.75
922 927 0.874390 GCAAATGCCTGTCGACTGAA 59.126 50.000 22.46 11.35 34.31 3.02
1052 1063 1.002087 GTGGAGACGATGTGAACCCTT 59.998 52.381 0.00 0.00 0.00 3.95
1106 1117 4.492160 GCGGCGACATCTCGGACA 62.492 66.667 12.98 0.00 40.53 4.02
1134 1154 0.170116 CAGCGTCTCTCTGGTCAGAC 59.830 60.000 0.00 0.00 36.45 3.51
1137 1157 0.537371 TGACAGCGTCTCTCTGGTCA 60.537 55.000 9.49 0.00 35.94 4.02
1394 1414 2.566570 TTCCTGGTGCGTGCGACTA 61.567 57.895 0.00 0.00 0.00 2.59
1474 1494 1.983972 CACGGAGTCTACTCAAGCAC 58.016 55.000 11.98 0.00 41.61 4.40
1475 1495 0.243907 GCACGGAGTCTACTCAAGCA 59.756 55.000 11.98 0.00 41.61 3.91
1476 1496 0.798771 CGCACGGAGTCTACTCAAGC 60.799 60.000 11.98 10.47 41.61 4.01
1477 1497 0.803117 TCGCACGGAGTCTACTCAAG 59.197 55.000 11.98 7.66 41.61 3.02
1478 1498 1.132453 CATCGCACGGAGTCTACTCAA 59.868 52.381 11.98 0.00 41.61 3.02
1479 1499 0.733150 CATCGCACGGAGTCTACTCA 59.267 55.000 11.98 0.00 41.61 3.41
1480 1500 0.733729 ACATCGCACGGAGTCTACTC 59.266 55.000 1.30 1.30 41.61 2.59
1481 1501 1.174783 AACATCGCACGGAGTCTACT 58.825 50.000 0.00 0.00 41.61 2.57
1482 1502 1.654105 CAAACATCGCACGGAGTCTAC 59.346 52.381 0.00 0.00 41.61 2.59
1483 1503 1.990799 CAAACATCGCACGGAGTCTA 58.009 50.000 0.00 0.00 41.61 2.59
1525 1545 3.383505 AGATACGCATGCCACAGTACTAA 59.616 43.478 13.15 0.00 0.00 2.24
1551 1571 0.392193 CCTTCGCAAGCACAGATCCT 60.392 55.000 0.00 0.00 37.18 3.24
1565 1585 9.526713 CATAGATCTGATAATACCAATCCTTCG 57.473 37.037 5.18 0.00 0.00 3.79
1603 1623 4.999950 ACTAGTTCATCCTCACAGCAAAAG 59.000 41.667 0.00 0.00 0.00 2.27
1610 1630 6.550938 ATGAATGACTAGTTCATCCTCACA 57.449 37.500 0.00 0.00 44.86 3.58
1641 1661 8.877864 TGGGATGACACTGATTAGTTATTTTT 57.122 30.769 0.00 0.00 34.07 1.94
1646 1666 5.687441 GCCATGGGATGACACTGATTAGTTA 60.687 44.000 15.13 0.00 34.07 2.24
1656 1676 0.322816 ACTGTGCCATGGGATGACAC 60.323 55.000 15.13 12.88 42.95 3.67
1730 1755 6.352516 ACTGGGATAAACAAGATCTAGCAAG 58.647 40.000 0.00 0.00 0.00 4.01
1909 1953 3.071874 TCGATCATTTTCTGGTGCCTT 57.928 42.857 0.00 0.00 0.00 4.35
1987 2031 3.694566 AGAAATGAATAAGACAACGGGGC 59.305 43.478 0.00 0.00 0.00 5.80
1988 2032 7.713507 TGTATAGAAATGAATAAGACAACGGGG 59.286 37.037 0.00 0.00 0.00 5.73
1989 2033 8.657074 TGTATAGAAATGAATAAGACAACGGG 57.343 34.615 0.00 0.00 0.00 5.28
1994 2038 9.056005 GCCACATGTATAGAAATGAATAAGACA 57.944 33.333 0.00 0.00 0.00 3.41
1995 2039 9.056005 TGCCACATGTATAGAAATGAATAAGAC 57.944 33.333 0.00 0.00 0.00 3.01
2062 2309 9.690434 GAAACTGATTACTAGCTTTCGTTATTG 57.310 33.333 0.00 0.00 0.00 1.90
2173 2420 6.594547 AGCCTTTTTCGGTAAAGAGATAACTC 59.405 38.462 10.50 0.00 42.90 3.01
2174 2421 6.473758 AGCCTTTTTCGGTAAAGAGATAACT 58.526 36.000 10.50 0.00 37.31 2.24
2175 2422 6.738832 AGCCTTTTTCGGTAAAGAGATAAC 57.261 37.500 10.50 0.00 37.31 1.89
2176 2423 7.360607 CGAAAGCCTTTTTCGGTAAAGAGATAA 60.361 37.037 12.72 0.00 45.17 1.75
2177 2424 6.091713 CGAAAGCCTTTTTCGGTAAAGAGATA 59.908 38.462 12.72 0.00 45.17 1.98
2178 2425 5.106673 CGAAAGCCTTTTTCGGTAAAGAGAT 60.107 40.000 12.72 0.13 45.17 2.75
2179 2426 4.212636 CGAAAGCCTTTTTCGGTAAAGAGA 59.787 41.667 12.72 0.00 45.17 3.10
2180 2427 4.464112 CGAAAGCCTTTTTCGGTAAAGAG 58.536 43.478 12.72 0.00 45.17 2.85
2181 2428 4.477302 CGAAAGCCTTTTTCGGTAAAGA 57.523 40.909 12.72 0.00 45.17 2.52
2197 2444 7.536281 GCTTTATAATATAAAACGGGGCGAAAG 59.464 37.037 6.87 0.00 0.00 2.62
2198 2445 7.013083 TGCTTTATAATATAAAACGGGGCGAAA 59.987 33.333 6.87 0.00 0.00 3.46
2199 2446 6.485984 TGCTTTATAATATAAAACGGGGCGAA 59.514 34.615 6.87 0.00 0.00 4.70
2200 2447 5.996513 TGCTTTATAATATAAAACGGGGCGA 59.003 36.000 6.87 0.00 0.00 5.54
2201 2448 6.081693 GTGCTTTATAATATAAAACGGGGCG 58.918 40.000 6.87 0.00 0.00 6.13
2202 2449 6.972722 TGTGCTTTATAATATAAAACGGGGC 58.027 36.000 6.87 6.86 0.00 5.80
2203 2450 8.626526 ACTTGTGCTTTATAATATAAAACGGGG 58.373 33.333 6.87 0.00 0.00 5.73
2204 2451 9.659830 GACTTGTGCTTTATAATATAAAACGGG 57.340 33.333 6.87 3.78 0.00 5.28
2205 2452 9.659830 GGACTTGTGCTTTATAATATAAAACGG 57.340 33.333 6.87 4.04 0.00 4.44
2212 2459 9.461312 TTGACTTGGACTTGTGCTTTATAATAT 57.539 29.630 0.00 0.00 0.00 1.28
2213 2460 8.726988 GTTGACTTGGACTTGTGCTTTATAATA 58.273 33.333 0.00 0.00 0.00 0.98
2214 2461 7.230510 TGTTGACTTGGACTTGTGCTTTATAAT 59.769 33.333 0.00 0.00 0.00 1.28
2215 2462 6.544197 TGTTGACTTGGACTTGTGCTTTATAA 59.456 34.615 0.00 0.00 0.00 0.98
2216 2463 6.058833 TGTTGACTTGGACTTGTGCTTTATA 58.941 36.000 0.00 0.00 0.00 0.98
2217 2464 4.887071 TGTTGACTTGGACTTGTGCTTTAT 59.113 37.500 0.00 0.00 0.00 1.40
2218 2465 4.265893 TGTTGACTTGGACTTGTGCTTTA 58.734 39.130 0.00 0.00 0.00 1.85
2219 2466 3.088532 TGTTGACTTGGACTTGTGCTTT 58.911 40.909 0.00 0.00 0.00 3.51
2220 2467 2.722094 TGTTGACTTGGACTTGTGCTT 58.278 42.857 0.00 0.00 0.00 3.91
2221 2468 2.418368 TGTTGACTTGGACTTGTGCT 57.582 45.000 0.00 0.00 0.00 4.40
2222 2469 3.058224 GGTATGTTGACTTGGACTTGTGC 60.058 47.826 0.00 0.00 0.00 4.57
2223 2470 4.024048 GTGGTATGTTGACTTGGACTTGTG 60.024 45.833 0.00 0.00 0.00 3.33
2224 2471 4.134563 GTGGTATGTTGACTTGGACTTGT 58.865 43.478 0.00 0.00 0.00 3.16
2225 2472 4.133820 TGTGGTATGTTGACTTGGACTTG 58.866 43.478 0.00 0.00 0.00 3.16
2226 2473 4.431416 TGTGGTATGTTGACTTGGACTT 57.569 40.909 0.00 0.00 0.00 3.01
2227 2474 4.431416 TTGTGGTATGTTGACTTGGACT 57.569 40.909 0.00 0.00 0.00 3.85
2228 2475 4.023193 CCTTTGTGGTATGTTGACTTGGAC 60.023 45.833 0.00 0.00 0.00 4.02
2229 2476 4.141287 CCTTTGTGGTATGTTGACTTGGA 58.859 43.478 0.00 0.00 0.00 3.53
2230 2477 4.503741 CCTTTGTGGTATGTTGACTTGG 57.496 45.455 0.00 0.00 0.00 3.61
2243 2490 3.258228 GTTTGTGGTTGAACCTTTGTGG 58.742 45.455 16.33 0.00 39.58 4.17
2244 2491 2.920490 CGTTTGTGGTTGAACCTTTGTG 59.080 45.455 16.33 0.00 39.58 3.33
2245 2492 2.672760 GCGTTTGTGGTTGAACCTTTGT 60.673 45.455 16.33 0.00 39.58 2.83
2246 2493 1.923864 GCGTTTGTGGTTGAACCTTTG 59.076 47.619 16.33 1.05 39.58 2.77
2247 2494 1.546476 TGCGTTTGTGGTTGAACCTTT 59.454 42.857 16.33 0.00 39.58 3.11
2248 2495 1.135228 GTGCGTTTGTGGTTGAACCTT 60.135 47.619 16.33 0.00 39.58 3.50
2249 2496 0.454196 GTGCGTTTGTGGTTGAACCT 59.546 50.000 16.33 0.00 39.58 3.50
2250 2497 0.171455 TGTGCGTTTGTGGTTGAACC 59.829 50.000 7.57 7.57 39.22 3.62
2251 2498 1.264672 GTGTGCGTTTGTGGTTGAAC 58.735 50.000 0.00 0.00 0.00 3.18
2252 2499 0.881796 TGTGTGCGTTTGTGGTTGAA 59.118 45.000 0.00 0.00 0.00 2.69
2253 2500 0.169230 GTGTGTGCGTTTGTGGTTGA 59.831 50.000 0.00 0.00 0.00 3.18
2254 2501 0.109551 TGTGTGTGCGTTTGTGGTTG 60.110 50.000 0.00 0.00 0.00 3.77
2255 2502 0.109504 GTGTGTGTGCGTTTGTGGTT 60.110 50.000 0.00 0.00 0.00 3.67
2256 2503 1.237954 TGTGTGTGTGCGTTTGTGGT 61.238 50.000 0.00 0.00 0.00 4.16
2257 2504 0.796491 GTGTGTGTGTGCGTTTGTGG 60.796 55.000 0.00 0.00 0.00 4.17
2258 2505 0.110010 TGTGTGTGTGTGCGTTTGTG 60.110 50.000 0.00 0.00 0.00 3.33
2259 2506 0.167908 CTGTGTGTGTGTGCGTTTGT 59.832 50.000 0.00 0.00 0.00 2.83
2260 2507 0.167908 ACTGTGTGTGTGTGCGTTTG 59.832 50.000 0.00 0.00 0.00 2.93
2261 2508 0.878416 AACTGTGTGTGTGTGCGTTT 59.122 45.000 0.00 0.00 0.00 3.60
2262 2509 0.446222 GAACTGTGTGTGTGTGCGTT 59.554 50.000 0.00 0.00 0.00 4.84
2263 2510 0.672091 TGAACTGTGTGTGTGTGCGT 60.672 50.000 0.00 0.00 0.00 5.24
2264 2511 0.445829 TTGAACTGTGTGTGTGTGCG 59.554 50.000 0.00 0.00 0.00 5.34
2265 2512 2.627863 TTTGAACTGTGTGTGTGTGC 57.372 45.000 0.00 0.00 0.00 4.57
2266 2513 3.128415 TGGATTTGAACTGTGTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
2267 2514 3.128589 GTGGATTTGAACTGTGTGTGTGT 59.871 43.478 0.00 0.00 0.00 3.72
2268 2515 3.128415 TGTGGATTTGAACTGTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
2269 2516 3.128589 GTGTGGATTTGAACTGTGTGTGT 59.871 43.478 0.00 0.00 0.00 3.72
2270 2517 3.128415 TGTGTGGATTTGAACTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
2271 2518 3.128589 GTGTGTGGATTTGAACTGTGTGT 59.871 43.478 0.00 0.00 0.00 3.72
2272 2519 3.694734 GTGTGTGGATTTGAACTGTGTG 58.305 45.455 0.00 0.00 0.00 3.82
2273 2520 2.354510 CGTGTGTGGATTTGAACTGTGT 59.645 45.455 0.00 0.00 0.00 3.72
2274 2521 2.854424 GCGTGTGTGGATTTGAACTGTG 60.854 50.000 0.00 0.00 0.00 3.66
2275 2522 1.333619 GCGTGTGTGGATTTGAACTGT 59.666 47.619 0.00 0.00 0.00 3.55
2276 2523 1.334960 GGCGTGTGTGGATTTGAACTG 60.335 52.381 0.00 0.00 0.00 3.16
2277 2524 0.951558 GGCGTGTGTGGATTTGAACT 59.048 50.000 0.00 0.00 0.00 3.01
2278 2525 0.039527 GGGCGTGTGTGGATTTGAAC 60.040 55.000 0.00 0.00 0.00 3.18
2279 2526 0.466372 TGGGCGTGTGTGGATTTGAA 60.466 50.000 0.00 0.00 0.00 2.69
2280 2527 0.466372 TTGGGCGTGTGTGGATTTGA 60.466 50.000 0.00 0.00 0.00 2.69
2281 2528 0.387202 TTTGGGCGTGTGTGGATTTG 59.613 50.000 0.00 0.00 0.00 2.32
2282 2529 1.068434 CTTTTGGGCGTGTGTGGATTT 59.932 47.619 0.00 0.00 0.00 2.17
2283 2530 0.673437 CTTTTGGGCGTGTGTGGATT 59.327 50.000 0.00 0.00 0.00 3.01
2284 2531 1.178534 CCTTTTGGGCGTGTGTGGAT 61.179 55.000 0.00 0.00 35.46 3.41
2285 2532 1.826054 CCTTTTGGGCGTGTGTGGA 60.826 57.895 0.00 0.00 35.46 4.02
2286 2533 2.727544 CCTTTTGGGCGTGTGTGG 59.272 61.111 0.00 0.00 35.46 4.17
2296 2543 2.497273 CCCTCAGCATTAACCCTTTTGG 59.503 50.000 0.00 0.00 41.37 3.28
2297 2544 2.094026 GCCCTCAGCATTAACCCTTTTG 60.094 50.000 0.00 0.00 42.97 2.44
2298 2545 2.179427 GCCCTCAGCATTAACCCTTTT 58.821 47.619 0.00 0.00 42.97 2.27
2299 2546 1.852633 GCCCTCAGCATTAACCCTTT 58.147 50.000 0.00 0.00 42.97 3.11
2300 2547 3.596362 GCCCTCAGCATTAACCCTT 57.404 52.632 0.00 0.00 42.97 3.95
2311 2558 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
2312 2559 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
2313 2560 0.536006 ACTTGTTGAGCTGTGCCCTC 60.536 55.000 0.00 0.00 0.00 4.30
2314 2561 0.536006 GACTTGTTGAGCTGTGCCCT 60.536 55.000 0.00 0.00 0.00 5.19
2315 2562 0.819259 TGACTTGTTGAGCTGTGCCC 60.819 55.000 0.00 0.00 0.00 5.36
2316 2563 1.068748 CATGACTTGTTGAGCTGTGCC 60.069 52.381 0.00 0.00 0.00 5.01
2317 2564 1.875514 TCATGACTTGTTGAGCTGTGC 59.124 47.619 0.00 0.00 0.00 4.57
2318 2565 3.396560 TCTCATGACTTGTTGAGCTGTG 58.603 45.455 0.00 0.00 39.36 3.66
2319 2566 3.070734 ACTCTCATGACTTGTTGAGCTGT 59.929 43.478 0.00 0.00 39.36 4.40
2320 2567 3.661944 ACTCTCATGACTTGTTGAGCTG 58.338 45.455 0.00 0.00 39.36 4.24
2321 2568 4.348863 AACTCTCATGACTTGTTGAGCT 57.651 40.909 7.18 0.00 39.36 4.09
2322 2569 6.105333 AGATAACTCTCATGACTTGTTGAGC 58.895 40.000 7.18 0.00 39.36 4.26
2323 2570 7.754069 GAGATAACTCTCATGACTTGTTGAG 57.246 40.000 11.32 8.89 46.13 3.02
2381 2636 2.372172 CAGTTAGAGTCCCTGTGGGTTT 59.628 50.000 2.25 0.00 44.74 3.27
2390 2645 3.263261 GCTTTACTGCAGTTAGAGTCCC 58.737 50.000 27.06 6.14 0.00 4.46
2391 2646 3.680458 GTGCTTTACTGCAGTTAGAGTCC 59.320 47.826 27.06 10.18 44.20 3.85
2396 2651 4.849111 GCTAGTGCTTTACTGCAGTTAG 57.151 45.455 27.06 22.17 43.28 2.34
2612 3009 6.608808 TGGAGGTCCTAACTGTTATACTAACC 59.391 42.308 0.00 5.15 36.82 2.85
2690 3088 8.951787 AGTATAACGCCTCATTTTATGTACAA 57.048 30.769 0.00 0.00 0.00 2.41
2807 3258 4.579340 CCTCTGCAATAGCTTGACATCAAT 59.421 41.667 0.00 0.00 42.74 2.57
2832 3285 0.393820 GTCACCGGTAGACAAACCCA 59.606 55.000 23.72 0.00 36.03 4.51
2865 3318 4.633980 GCTGTTTGAAACTGCGGG 57.366 55.556 21.02 3.50 44.44 6.13
2878 3331 2.119801 CCACTCTTTGGCATAGCTGT 57.880 50.000 0.00 0.00 39.07 4.40
2892 3349 2.744202 CTGTTTGAGTATGGTGCCACTC 59.256 50.000 0.00 0.00 41.31 3.51
2950 3407 6.403866 ACAATTGTCTGATAAGGTTGCAAA 57.596 33.333 4.92 0.00 0.00 3.68
2972 3429 6.838198 TGCCACTAAATCGTATTCATGTAC 57.162 37.500 0.00 0.00 0.00 2.90
3064 3521 4.962151 GCGAATTGCCGTAAATTACTTCTC 59.038 41.667 1.42 0.00 37.76 2.87
3080 3537 3.077229 TGGAAAACACACTGCGAATTG 57.923 42.857 0.00 0.00 0.00 2.32
3086 3543 5.186198 AGGACTATATGGAAAACACACTGC 58.814 41.667 0.00 0.00 0.00 4.40
3102 3559 6.160814 AGTTAGGAGTCAGGAGTTAGGACTAT 59.839 42.308 0.00 0.00 41.68 2.12
3161 3619 3.432933 GCGGGTGAACACGTAGATTTTTA 59.567 43.478 6.99 0.00 46.07 1.52
3197 3667 6.510157 CGCATCTGTAGTATAACCTGCAAAAG 60.510 42.308 0.00 0.00 0.00 2.27
3227 3698 1.733041 GCACTTGTGCTCGTCGCTA 60.733 57.895 17.36 0.00 40.11 4.26
3396 3867 1.731720 GCTTTGGAGAAGTCGAGCAT 58.268 50.000 0.00 0.00 0.00 3.79
3446 3917 1.208293 GCGTCTTCCTCCTCCTTCAAT 59.792 52.381 0.00 0.00 0.00 2.57
3453 3924 1.668101 ATGTCCGCGTCTTCCTCCTC 61.668 60.000 4.92 0.00 0.00 3.71
3628 4099 5.872070 AGTTGATCTAGCTAAAACACTGAGC 59.128 40.000 0.00 0.00 36.42 4.26
3775 4759 2.282820 GCGAGGAAATAAGCTCAAGTCG 59.717 50.000 0.00 0.00 0.00 4.18
3792 4776 5.799936 TCAAGTTTTCTTCTGTTTTTGCGAG 59.200 36.000 0.00 0.00 38.17 5.03
3802 4786 7.880105 AGGAAATAAGCTCAAGTTTTCTTCTG 58.120 34.615 0.00 0.00 38.17 3.02
3804 4788 7.018235 CGAGGAAATAAGCTCAAGTTTTCTTC 58.982 38.462 0.00 0.00 38.17 2.87
3807 4791 5.089411 GCGAGGAAATAAGCTCAAGTTTTC 58.911 41.667 0.00 0.00 0.00 2.29
3879 4867 1.446966 GGGCGAGCTTCAGAGACAC 60.447 63.158 0.00 0.00 0.00 3.67
3893 4881 4.074970 AGAATATGGAGCAATTAAGGGCG 58.925 43.478 0.00 0.00 34.54 6.13
3896 4884 7.756395 ACATGAGAATATGGAGCAATTAAGG 57.244 36.000 0.00 0.00 32.32 2.69
3914 4946 4.944962 TTTTGCGATGGTCTTACATGAG 57.055 40.909 0.00 0.00 0.00 2.90
3945 4977 9.507329 AGAAGCTAAATGTGTTTTAGATGAGAA 57.493 29.630 8.82 0.00 43.83 2.87
4034 5069 4.582701 TTTATGGAAAACAGCAGGTGTG 57.417 40.909 5.89 0.00 40.26 3.82
4111 5146 6.449635 TGGAACGCTTTCTATGCATTATTT 57.550 33.333 3.54 0.00 31.71 1.40
4112 5147 6.262944 TGATGGAACGCTTTCTATGCATTATT 59.737 34.615 3.54 0.00 33.30 1.40
4113 5148 5.764686 TGATGGAACGCTTTCTATGCATTAT 59.235 36.000 3.54 0.00 33.30 1.28
4114 5149 5.122519 TGATGGAACGCTTTCTATGCATTA 58.877 37.500 3.54 0.00 33.30 1.90
4122 5157 2.037772 AGTGTCTGATGGAACGCTTTCT 59.962 45.455 2.69 0.00 31.71 2.52
4405 5440 0.886490 CTTTGCCGAGAGCCACACTT 60.886 55.000 0.00 0.00 42.71 3.16
4446 5483 3.308866 AGTTAGAAAGAACGCACACACAC 59.691 43.478 0.00 0.00 34.36 3.82
4592 5633 2.592102 AAAGAAGGAGAGCATTGCCA 57.408 45.000 4.70 0.00 0.00 4.92
4694 5735 0.803117 GCTACACTCGGAAAAAGGCC 59.197 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.