Multiple sequence alignment - TraesCS1B01G310800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G310800 chr1B 100.000 4503 0 0 1 4503 533860778 533865280 0.000000e+00 8316
1 TraesCS1B01G310800 chr1A 91.949 2211 128 24 472 2659 495444079 495446262 0.000000e+00 3051
2 TraesCS1B01G310800 chr1A 89.780 1497 105 23 3008 4485 495446697 495448164 0.000000e+00 1873
3 TraesCS1B01G310800 chr1A 92.437 357 25 1 2656 3010 495446308 495446664 4.020000e-140 508
4 TraesCS1B01G310800 chr1A 95.092 163 8 0 2286 2448 71070595 71070757 1.610000e-64 257
5 TraesCS1B01G310800 chr1D 94.790 1497 73 4 3008 4503 398458684 398460176 0.000000e+00 2327
6 TraesCS1B01G310800 chr1D 92.715 1208 67 10 899 2092 398456265 398457465 0.000000e+00 1724
7 TraesCS1B01G310800 chr1D 89.580 595 29 18 237 818 398455163 398455737 0.000000e+00 725
8 TraesCS1B01G310800 chr1D 94.545 165 8 1 2285 2449 463382067 463381904 2.080000e-63 254
9 TraesCS1B01G310800 chr4B 94.152 171 9 1 2281 2451 178081268 178081099 4.470000e-65 259
10 TraesCS1B01G310800 chr3D 93.678 174 10 1 2282 2455 537154698 537154870 4.470000e-65 259
11 TraesCS1B01G310800 chr2A 95.092 163 8 0 2286 2448 578387717 578387555 1.610000e-64 257
12 TraesCS1B01G310800 chr2A 94.479 163 9 0 2286 2448 70985584 70985746 7.480000e-63 252
13 TraesCS1B01G310800 chr6D 94.048 168 8 1 2285 2452 431160829 431160664 2.080000e-63 254
14 TraesCS1B01G310800 chr4A 93.452 168 9 2 2286 2452 517406632 517406466 9.670000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G310800 chr1B 533860778 533865280 4502 False 8316.000000 8316 100.000000 1 4503 1 chr1B.!!$F1 4502
1 TraesCS1B01G310800 chr1A 495444079 495448164 4085 False 1810.666667 3051 91.388667 472 4485 3 chr1A.!!$F2 4013
2 TraesCS1B01G310800 chr1D 398455163 398460176 5013 False 1592.000000 2327 92.361667 237 4503 3 chr1D.!!$F1 4266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.106268 TTGGGCTTTGTTCAGAGGCA 60.106 50.000 16.04 3.26 39.95 4.75 F
155 156 0.106268 TGGGCTTTGTTCAGAGGCAA 60.106 50.000 16.04 4.87 39.95 4.52 F
386 387 0.234884 CTCGACGTGGCAAGAAAACC 59.765 55.000 7.60 0.00 0.00 3.27 F
1015 1484 0.689745 TTCGATGGGGTCCTTCCGAT 60.690 55.000 0.00 0.00 37.00 4.18 F
2404 3331 1.065491 TGCTCCGTACGTAGTCCCTTA 60.065 52.381 15.21 0.00 43.93 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 1779 0.838554 TTCCCCACCGGAGTTGATGA 60.839 55.000 9.46 0.0 43.39 2.92 R
1312 1784 1.229853 AGGATTCCCCACCGGAGTT 60.230 57.895 9.46 0.0 43.39 3.01 R
2199 3125 0.456312 CCTCGTCAGTACTTCACCGC 60.456 60.000 0.00 0.0 0.00 5.68 R
2500 3435 0.613260 GTGACCAGTATGCCCTGACA 59.387 55.000 0.00 0.0 34.23 3.58 R
4086 5156 0.321653 GCGTGAGGAAGGGAACATGT 60.322 55.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.467566 GACCCCACGTGTCTGTATTT 57.532 50.000 15.65 0.00 0.00 1.40
20 21 2.073816 GACCCCACGTGTCTGTATTTG 58.926 52.381 15.65 0.00 0.00 2.32
21 22 1.271163 ACCCCACGTGTCTGTATTTGG 60.271 52.381 15.65 4.76 0.00 3.28
22 23 0.802494 CCCACGTGTCTGTATTTGGC 59.198 55.000 15.65 0.00 0.00 4.52
23 24 1.610624 CCCACGTGTCTGTATTTGGCT 60.611 52.381 15.65 0.00 0.00 4.75
24 25 1.464608 CCACGTGTCTGTATTTGGCTG 59.535 52.381 15.65 0.00 0.00 4.85
25 26 2.143122 CACGTGTCTGTATTTGGCTGT 58.857 47.619 7.58 0.00 0.00 4.40
26 27 2.157668 CACGTGTCTGTATTTGGCTGTC 59.842 50.000 7.58 0.00 0.00 3.51
27 28 1.390123 CGTGTCTGTATTTGGCTGTCG 59.610 52.381 0.00 0.00 0.00 4.35
28 29 2.413837 GTGTCTGTATTTGGCTGTCGT 58.586 47.619 0.00 0.00 0.00 4.34
29 30 2.806244 GTGTCTGTATTTGGCTGTCGTT 59.194 45.455 0.00 0.00 0.00 3.85
30 31 3.250040 GTGTCTGTATTTGGCTGTCGTTT 59.750 43.478 0.00 0.00 0.00 3.60
31 32 3.249799 TGTCTGTATTTGGCTGTCGTTTG 59.750 43.478 0.00 0.00 0.00 2.93
32 33 3.496884 GTCTGTATTTGGCTGTCGTTTGA 59.503 43.478 0.00 0.00 0.00 2.69
33 34 4.154195 GTCTGTATTTGGCTGTCGTTTGAT 59.846 41.667 0.00 0.00 0.00 2.57
34 35 4.391830 TCTGTATTTGGCTGTCGTTTGATC 59.608 41.667 0.00 0.00 0.00 2.92
35 36 4.323417 TGTATTTGGCTGTCGTTTGATCT 58.677 39.130 0.00 0.00 0.00 2.75
36 37 4.391830 TGTATTTGGCTGTCGTTTGATCTC 59.608 41.667 0.00 0.00 0.00 2.75
37 38 2.839486 TTGGCTGTCGTTTGATCTCT 57.161 45.000 0.00 0.00 0.00 3.10
38 39 2.370281 TGGCTGTCGTTTGATCTCTC 57.630 50.000 0.00 0.00 0.00 3.20
39 40 1.066858 TGGCTGTCGTTTGATCTCTCC 60.067 52.381 0.00 0.00 0.00 3.71
40 41 1.646189 GCTGTCGTTTGATCTCTCCC 58.354 55.000 0.00 0.00 0.00 4.30
41 42 1.066858 GCTGTCGTTTGATCTCTCCCA 60.067 52.381 0.00 0.00 0.00 4.37
42 43 2.886081 CTGTCGTTTGATCTCTCCCAG 58.114 52.381 0.00 0.00 0.00 4.45
43 44 2.493675 CTGTCGTTTGATCTCTCCCAGA 59.506 50.000 0.00 0.00 34.78 3.86
44 45 2.897326 TGTCGTTTGATCTCTCCCAGAA 59.103 45.455 0.00 0.00 33.62 3.02
45 46 3.056536 TGTCGTTTGATCTCTCCCAGAAG 60.057 47.826 0.00 0.00 33.62 2.85
46 47 2.093973 TCGTTTGATCTCTCCCAGAAGC 60.094 50.000 0.00 0.00 33.62 3.86
47 48 2.354103 CGTTTGATCTCTCCCAGAAGCA 60.354 50.000 0.00 0.00 33.62 3.91
48 49 3.681034 CGTTTGATCTCTCCCAGAAGCAT 60.681 47.826 0.00 0.00 33.62 3.79
49 50 3.834489 TTGATCTCTCCCAGAAGCATC 57.166 47.619 0.00 0.00 33.62 3.91
50 51 2.755686 TGATCTCTCCCAGAAGCATCA 58.244 47.619 0.00 0.00 33.62 3.07
51 52 3.109928 TGATCTCTCCCAGAAGCATCAA 58.890 45.455 0.00 0.00 33.62 2.57
52 53 3.118482 TGATCTCTCCCAGAAGCATCAAC 60.118 47.826 0.00 0.00 33.62 3.18
53 54 2.259917 TCTCTCCCAGAAGCATCAACA 58.740 47.619 0.00 0.00 0.00 3.33
54 55 2.639347 TCTCTCCCAGAAGCATCAACAA 59.361 45.455 0.00 0.00 0.00 2.83
55 56 3.008330 CTCTCCCAGAAGCATCAACAAG 58.992 50.000 0.00 0.00 0.00 3.16
56 57 2.639347 TCTCCCAGAAGCATCAACAAGA 59.361 45.455 0.00 0.00 0.00 3.02
57 58 3.265221 TCTCCCAGAAGCATCAACAAGAT 59.735 43.478 0.00 0.00 37.48 2.40
58 59 4.015084 CTCCCAGAAGCATCAACAAGATT 58.985 43.478 0.00 0.00 33.72 2.40
59 60 4.410099 TCCCAGAAGCATCAACAAGATTT 58.590 39.130 0.00 0.00 33.72 2.17
60 61 4.460382 TCCCAGAAGCATCAACAAGATTTC 59.540 41.667 0.00 0.00 33.72 2.17
61 62 4.219070 CCCAGAAGCATCAACAAGATTTCA 59.781 41.667 0.00 0.00 33.72 2.69
62 63 5.279106 CCCAGAAGCATCAACAAGATTTCAA 60.279 40.000 0.00 0.00 33.72 2.69
63 64 5.632347 CCAGAAGCATCAACAAGATTTCAAC 59.368 40.000 0.00 0.00 33.72 3.18
64 65 6.210796 CAGAAGCATCAACAAGATTTCAACA 58.789 36.000 0.00 0.00 33.72 3.33
65 66 6.866770 CAGAAGCATCAACAAGATTTCAACAT 59.133 34.615 0.00 0.00 33.72 2.71
66 67 8.024865 CAGAAGCATCAACAAGATTTCAACATA 58.975 33.333 0.00 0.00 33.72 2.29
67 68 8.746530 AGAAGCATCAACAAGATTTCAACATAT 58.253 29.630 0.00 0.00 33.72 1.78
68 69 9.362539 GAAGCATCAACAAGATTTCAACATATT 57.637 29.630 0.00 0.00 33.72 1.28
69 70 9.715121 AAGCATCAACAAGATTTCAACATATTT 57.285 25.926 0.00 0.00 33.72 1.40
94 95 5.873179 TTGTTTATTTTGCTCTAGGGTCG 57.127 39.130 0.00 0.00 0.00 4.79
95 96 5.155278 TGTTTATTTTGCTCTAGGGTCGA 57.845 39.130 0.00 0.00 0.00 4.20
96 97 5.741011 TGTTTATTTTGCTCTAGGGTCGAT 58.259 37.500 0.00 0.00 0.00 3.59
97 98 5.815740 TGTTTATTTTGCTCTAGGGTCGATC 59.184 40.000 0.00 0.00 0.00 3.69
98 99 5.871396 TTATTTTGCTCTAGGGTCGATCT 57.129 39.130 0.00 0.00 0.00 2.75
99 100 4.762289 ATTTTGCTCTAGGGTCGATCTT 57.238 40.909 0.00 0.00 0.00 2.40
100 101 4.553330 TTTTGCTCTAGGGTCGATCTTT 57.447 40.909 0.00 0.00 0.00 2.52
101 102 5.670792 TTTTGCTCTAGGGTCGATCTTTA 57.329 39.130 0.00 0.00 0.00 1.85
102 103 4.920640 TTGCTCTAGGGTCGATCTTTAG 57.079 45.455 0.00 0.00 0.00 1.85
103 104 4.166246 TGCTCTAGGGTCGATCTTTAGA 57.834 45.455 0.00 3.17 0.00 2.10
104 105 4.138290 TGCTCTAGGGTCGATCTTTAGAG 58.862 47.826 22.60 22.60 40.03 2.43
105 106 3.504520 GCTCTAGGGTCGATCTTTAGAGG 59.495 52.174 25.41 14.92 38.38 3.69
106 107 3.488363 TCTAGGGTCGATCTTTAGAGGC 58.512 50.000 0.00 0.00 0.00 4.70
107 108 2.160721 AGGGTCGATCTTTAGAGGCA 57.839 50.000 0.00 0.00 0.00 4.75
108 109 2.467880 AGGGTCGATCTTTAGAGGCAA 58.532 47.619 0.00 0.00 0.00 4.52
109 110 2.168728 AGGGTCGATCTTTAGAGGCAAC 59.831 50.000 0.00 0.00 0.00 4.17
110 111 2.093658 GGGTCGATCTTTAGAGGCAACA 60.094 50.000 0.00 0.00 41.41 3.33
111 112 3.596214 GGTCGATCTTTAGAGGCAACAA 58.404 45.455 0.00 0.00 41.41 2.83
112 113 3.371285 GGTCGATCTTTAGAGGCAACAAC 59.629 47.826 0.00 0.00 41.41 3.32
113 114 3.060895 GTCGATCTTTAGAGGCAACAACG 59.939 47.826 0.00 0.00 41.41 4.10
114 115 3.057104 TCGATCTTTAGAGGCAACAACGA 60.057 43.478 0.00 0.00 41.41 3.85
115 116 3.678072 CGATCTTTAGAGGCAACAACGAA 59.322 43.478 0.00 0.00 41.41 3.85
116 117 4.330074 CGATCTTTAGAGGCAACAACGAAT 59.670 41.667 0.00 0.00 41.41 3.34
117 118 5.551760 ATCTTTAGAGGCAACAACGAATG 57.448 39.130 0.00 0.00 41.41 2.67
118 119 3.188460 TCTTTAGAGGCAACAACGAATGC 59.812 43.478 0.00 0.00 41.82 3.56
119 120 2.472695 TAGAGGCAACAACGAATGCT 57.527 45.000 0.00 0.00 42.20 3.79
120 121 2.472695 AGAGGCAACAACGAATGCTA 57.527 45.000 0.00 0.00 42.20 3.49
121 122 2.991250 AGAGGCAACAACGAATGCTAT 58.009 42.857 0.00 0.00 42.20 2.97
122 123 2.679837 AGAGGCAACAACGAATGCTATG 59.320 45.455 0.00 0.00 42.20 2.23
123 124 1.133025 AGGCAACAACGAATGCTATGC 59.867 47.619 0.00 0.17 42.20 3.14
124 125 1.135431 GGCAACAACGAATGCTATGCA 60.135 47.619 15.06 0.00 44.86 3.96
125 126 4.740557 AGGCAACAACGAATGCTATGCAT 61.741 43.478 3.79 3.79 46.98 3.96
140 141 1.740297 TGCATTGCATGATTTTGGGC 58.260 45.000 7.38 0.00 31.71 5.36
141 142 1.279558 TGCATTGCATGATTTTGGGCT 59.720 42.857 7.38 0.00 31.71 5.19
142 143 2.290387 TGCATTGCATGATTTTGGGCTT 60.290 40.909 7.38 0.00 31.71 4.35
143 144 2.750712 GCATTGCATGATTTTGGGCTTT 59.249 40.909 3.15 0.00 0.00 3.51
144 145 3.426963 GCATTGCATGATTTTGGGCTTTG 60.427 43.478 3.15 0.00 0.00 2.77
145 146 3.488778 TTGCATGATTTTGGGCTTTGT 57.511 38.095 0.00 0.00 0.00 2.83
146 147 3.488778 TGCATGATTTTGGGCTTTGTT 57.511 38.095 0.00 0.00 0.00 2.83
147 148 3.401182 TGCATGATTTTGGGCTTTGTTC 58.599 40.909 0.00 0.00 0.00 3.18
148 149 3.181457 TGCATGATTTTGGGCTTTGTTCA 60.181 39.130 0.00 0.00 0.00 3.18
149 150 3.434299 GCATGATTTTGGGCTTTGTTCAG 59.566 43.478 0.00 0.00 0.00 3.02
150 151 4.800249 GCATGATTTTGGGCTTTGTTCAGA 60.800 41.667 0.00 0.00 0.00 3.27
151 152 4.589216 TGATTTTGGGCTTTGTTCAGAG 57.411 40.909 0.00 0.00 0.00 3.35
152 153 3.321682 TGATTTTGGGCTTTGTTCAGAGG 59.678 43.478 0.00 0.00 0.00 3.69
153 154 1.039856 TTTGGGCTTTGTTCAGAGGC 58.960 50.000 8.07 8.07 37.69 4.70
154 155 0.106268 TTGGGCTTTGTTCAGAGGCA 60.106 50.000 16.04 3.26 39.95 4.75
155 156 0.106268 TGGGCTTTGTTCAGAGGCAA 60.106 50.000 16.04 4.87 39.95 4.52
156 157 0.600057 GGGCTTTGTTCAGAGGCAAG 59.400 55.000 16.04 0.00 39.95 4.01
157 158 1.609208 GGCTTTGTTCAGAGGCAAGA 58.391 50.000 10.96 0.00 38.25 3.02
158 159 2.165998 GGCTTTGTTCAGAGGCAAGAT 58.834 47.619 10.96 0.00 38.25 2.40
159 160 2.094854 GGCTTTGTTCAGAGGCAAGATG 60.095 50.000 10.96 0.00 38.25 2.90
160 161 2.555757 GCTTTGTTCAGAGGCAAGATGT 59.444 45.455 0.00 0.00 0.00 3.06
161 162 3.611057 GCTTTGTTCAGAGGCAAGATGTG 60.611 47.826 0.00 0.00 0.00 3.21
162 163 2.189594 TGTTCAGAGGCAAGATGTGG 57.810 50.000 0.00 0.00 0.00 4.17
163 164 1.271543 TGTTCAGAGGCAAGATGTGGG 60.272 52.381 0.00 0.00 0.00 4.61
164 165 0.329261 TTCAGAGGCAAGATGTGGGG 59.671 55.000 0.00 0.00 0.00 4.96
165 166 1.751927 CAGAGGCAAGATGTGGGGC 60.752 63.158 0.00 0.00 0.00 5.80
166 167 2.440980 GAGGCAAGATGTGGGGCC 60.441 66.667 0.00 0.00 46.77 5.80
168 169 3.006677 GGCAAGATGTGGGGCCTA 58.993 61.111 0.84 0.00 43.09 3.93
169 170 1.152881 GGCAAGATGTGGGGCCTAG 60.153 63.158 0.84 0.00 43.09 3.02
170 171 1.152881 GCAAGATGTGGGGCCTAGG 60.153 63.158 3.67 3.67 0.00 3.02
171 172 1.926426 GCAAGATGTGGGGCCTAGGT 61.926 60.000 11.31 0.00 0.00 3.08
172 173 0.625849 CAAGATGTGGGGCCTAGGTT 59.374 55.000 11.31 0.00 0.00 3.50
173 174 1.843851 CAAGATGTGGGGCCTAGGTTA 59.156 52.381 11.31 0.00 0.00 2.85
174 175 1.807814 AGATGTGGGGCCTAGGTTAG 58.192 55.000 11.31 0.00 0.00 2.34
175 176 1.294068 AGATGTGGGGCCTAGGTTAGA 59.706 52.381 11.31 0.00 0.00 2.10
176 177 1.694696 GATGTGGGGCCTAGGTTAGAG 59.305 57.143 11.31 0.00 0.00 2.43
177 178 0.714180 TGTGGGGCCTAGGTTAGAGA 59.286 55.000 11.31 0.00 0.00 3.10
178 179 1.121378 GTGGGGCCTAGGTTAGAGAC 58.879 60.000 11.31 0.00 0.00 3.36
179 180 0.714180 TGGGGCCTAGGTTAGAGACA 59.286 55.000 11.31 0.00 0.00 3.41
180 181 1.343075 TGGGGCCTAGGTTAGAGACAG 60.343 57.143 11.31 0.00 0.00 3.51
181 182 0.753867 GGGCCTAGGTTAGAGACAGC 59.246 60.000 11.31 0.00 0.00 4.40
182 183 1.689892 GGGCCTAGGTTAGAGACAGCT 60.690 57.143 11.31 0.00 0.00 4.24
183 184 1.410882 GGCCTAGGTTAGAGACAGCTG 59.589 57.143 13.48 13.48 0.00 4.24
184 185 2.379972 GCCTAGGTTAGAGACAGCTGA 58.620 52.381 23.35 0.00 0.00 4.26
185 186 2.360801 GCCTAGGTTAGAGACAGCTGAG 59.639 54.545 23.35 2.45 0.00 3.35
186 187 2.360801 CCTAGGTTAGAGACAGCTGAGC 59.639 54.545 23.35 12.03 0.00 4.26
187 188 1.190643 AGGTTAGAGACAGCTGAGCC 58.809 55.000 23.35 9.04 0.00 4.70
188 189 1.190643 GGTTAGAGACAGCTGAGCCT 58.809 55.000 23.35 13.96 0.00 4.58
189 190 1.136110 GGTTAGAGACAGCTGAGCCTC 59.864 57.143 23.35 21.17 0.00 4.70
190 191 2.099405 GTTAGAGACAGCTGAGCCTCT 58.901 52.381 27.39 27.39 39.17 3.69
191 192 3.283751 GTTAGAGACAGCTGAGCCTCTA 58.716 50.000 26.01 26.01 37.25 2.43
192 193 2.754012 AGAGACAGCTGAGCCTCTAT 57.246 50.000 23.35 7.08 34.54 1.98
193 194 3.874383 AGAGACAGCTGAGCCTCTATA 57.126 47.619 23.35 0.00 34.54 1.31
194 195 3.486383 AGAGACAGCTGAGCCTCTATAC 58.514 50.000 23.35 1.03 34.54 1.47
195 196 3.117701 AGAGACAGCTGAGCCTCTATACA 60.118 47.826 23.35 0.00 34.54 2.29
196 197 2.955660 AGACAGCTGAGCCTCTATACAC 59.044 50.000 23.35 0.00 0.00 2.90
197 198 2.955660 GACAGCTGAGCCTCTATACACT 59.044 50.000 23.35 0.00 0.00 3.55
198 199 2.692557 ACAGCTGAGCCTCTATACACTG 59.307 50.000 23.35 0.00 0.00 3.66
199 200 1.686052 AGCTGAGCCTCTATACACTGC 59.314 52.381 0.00 0.00 0.00 4.40
200 201 1.686052 GCTGAGCCTCTATACACTGCT 59.314 52.381 0.00 0.00 34.40 4.24
201 202 2.545532 GCTGAGCCTCTATACACTGCTG 60.546 54.545 0.00 0.00 31.23 4.41
202 203 2.954989 CTGAGCCTCTATACACTGCTGA 59.045 50.000 0.00 0.00 31.23 4.26
203 204 3.570540 TGAGCCTCTATACACTGCTGAT 58.429 45.455 0.00 0.00 31.23 2.90
204 205 3.320256 TGAGCCTCTATACACTGCTGATG 59.680 47.826 0.00 0.00 31.23 3.07
205 206 2.036992 AGCCTCTATACACTGCTGATGC 59.963 50.000 0.00 0.00 40.20 3.91
206 207 2.869636 GCCTCTATACACTGCTGATGCC 60.870 54.545 0.00 0.00 38.71 4.40
207 208 2.289320 CCTCTATACACTGCTGATGCCC 60.289 54.545 0.00 0.00 38.71 5.36
208 209 2.632028 CTCTATACACTGCTGATGCCCT 59.368 50.000 0.00 0.00 38.71 5.19
209 210 2.366590 TCTATACACTGCTGATGCCCTG 59.633 50.000 0.00 0.00 38.71 4.45
210 211 1.206878 ATACACTGCTGATGCCCTGA 58.793 50.000 0.00 0.00 38.71 3.86
211 212 1.206878 TACACTGCTGATGCCCTGAT 58.793 50.000 0.00 0.00 38.71 2.90
212 213 0.393944 ACACTGCTGATGCCCTGATG 60.394 55.000 0.00 0.00 38.71 3.07
213 214 1.101635 CACTGCTGATGCCCTGATGG 61.102 60.000 0.00 0.00 38.71 3.51
230 231 4.394102 GGCTAACCCTAGGGCTCA 57.606 61.111 28.88 11.98 39.32 4.26
231 232 2.855669 GGCTAACCCTAGGGCTCAT 58.144 57.895 28.88 14.01 39.32 2.90
232 233 2.025636 GGCTAACCCTAGGGCTCATA 57.974 55.000 28.88 14.40 39.32 2.15
233 234 1.624312 GGCTAACCCTAGGGCTCATAC 59.376 57.143 28.88 12.32 39.32 2.39
234 235 2.326428 GCTAACCCTAGGGCTCATACA 58.674 52.381 28.88 0.00 39.32 2.29
235 236 2.300437 GCTAACCCTAGGGCTCATACAG 59.700 54.545 28.88 10.59 39.32 2.74
319 320 3.477530 AGACAGAGGGTAACAACAAAGC 58.522 45.455 0.00 0.00 39.74 3.51
325 326 5.122396 CAGAGGGTAACAACAAAGCTATCAC 59.878 44.000 0.00 0.00 39.74 3.06
343 344 0.806868 ACGAGAGGATAAACGCGACA 59.193 50.000 15.93 0.00 33.96 4.35
348 349 0.734942 AGGATAAACGCGACACACCG 60.735 55.000 15.93 0.00 0.00 4.94
382 383 2.733218 CGCTCGACGTGGCAAGAA 60.733 61.111 7.60 0.00 36.87 2.52
383 384 2.307309 CGCTCGACGTGGCAAGAAA 61.307 57.895 7.60 0.00 36.87 2.52
384 385 1.827315 CGCTCGACGTGGCAAGAAAA 61.827 55.000 7.60 0.00 36.87 2.29
385 386 0.384353 GCTCGACGTGGCAAGAAAAC 60.384 55.000 7.60 0.00 0.00 2.43
386 387 0.234884 CTCGACGTGGCAAGAAAACC 59.765 55.000 7.60 0.00 0.00 3.27
387 388 1.083015 CGACGTGGCAAGAAAACCG 60.083 57.895 7.60 0.00 0.00 4.44
388 389 1.281656 GACGTGGCAAGAAAACCGG 59.718 57.895 7.60 0.00 0.00 5.28
389 390 2.125202 GACGTGGCAAGAAAACCGGG 62.125 60.000 6.32 0.00 0.00 5.73
390 391 2.914908 CGTGGCAAGAAAACCGGGG 61.915 63.158 6.32 0.00 0.00 5.73
391 392 1.529713 GTGGCAAGAAAACCGGGGA 60.530 57.895 6.32 0.00 0.00 4.81
392 393 1.529713 TGGCAAGAAAACCGGGGAC 60.530 57.895 6.32 0.00 0.00 4.46
393 394 1.529713 GGCAAGAAAACCGGGGACA 60.530 57.895 6.32 0.00 0.00 4.02
453 454 1.301874 TCGCCCAAACCGAATCGTT 60.302 52.632 0.82 0.00 0.00 3.85
463 464 5.289917 CCAAACCGAATCGTTTTCAAGTTTT 59.710 36.000 0.82 0.00 33.69 2.43
502 504 8.579863 AGATCGTCTTCCTTTCAAAATTTCATT 58.420 29.630 0.00 0.00 0.00 2.57
546 548 5.678616 GCAAAGTTTCAGCAAGTTGTCCTAA 60.679 40.000 4.48 0.00 0.00 2.69
736 743 2.285668 CCCAAGCCTCCTCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
741 748 2.766229 GCCTCCTCCTCCAGGTCC 60.766 72.222 0.00 0.00 43.95 4.46
787 803 2.756283 CTCCTCGGCCTCCTCGTT 60.756 66.667 0.00 0.00 0.00 3.85
830 847 4.344865 GGAAGCGCCCCAACTCCA 62.345 66.667 2.29 0.00 0.00 3.86
875 892 3.917760 CGGCCTCCAGATCCCGAC 61.918 72.222 0.00 0.00 43.20 4.79
876 893 3.551407 GGCCTCCAGATCCCGACC 61.551 72.222 0.00 0.00 0.00 4.79
1005 1474 2.542907 CGCCCGAATTTCGATGGGG 61.543 63.158 19.91 16.34 43.74 4.96
1015 1484 0.689745 TTCGATGGGGTCCTTCCGAT 60.690 55.000 0.00 0.00 37.00 4.18
1041 1510 2.829003 CTCACGGCGCTCCTCCTA 60.829 66.667 6.90 0.00 0.00 2.94
1147 1616 3.761897 TGCACTTGTTTGGGTTAGCTAT 58.238 40.909 0.00 0.00 0.00 2.97
1148 1617 4.912586 TGCACTTGTTTGGGTTAGCTATA 58.087 39.130 0.00 0.00 0.00 1.31
1149 1618 5.505780 TGCACTTGTTTGGGTTAGCTATAT 58.494 37.500 0.00 0.00 0.00 0.86
1150 1619 6.654959 TGCACTTGTTTGGGTTAGCTATATA 58.345 36.000 0.00 0.00 0.00 0.86
1176 1648 4.250464 TGTATTGTCTTGTCGAATGGGTC 58.750 43.478 0.00 0.00 0.00 4.46
1187 1659 1.366854 GAATGGGTCGGCGTTCTTCC 61.367 60.000 6.85 3.39 0.00 3.46
1201 1673 3.381949 GTTCTTCCGAGAATATGGACGG 58.618 50.000 0.00 0.00 43.41 4.79
1282 1754 1.203364 ACAGGTGGATCTGAGAAGGGT 60.203 52.381 0.00 0.00 38.11 4.34
1299 1771 1.668151 GTGCCGCCTCGAAAGAACT 60.668 57.895 0.00 0.00 41.32 3.01
1303 1775 1.292223 CGCCTCGAAAGAACTGGGA 59.708 57.895 0.00 0.00 41.32 4.37
1307 1779 2.876079 GCCTCGAAAGAACTGGGACAAT 60.876 50.000 0.00 0.00 41.32 2.71
1312 1784 4.002982 CGAAAGAACTGGGACAATCATCA 58.997 43.478 0.00 0.00 38.70 3.07
1336 1808 1.264749 CGGTGGGGAATCCTGAGACA 61.265 60.000 0.00 0.00 36.20 3.41
1501 1973 1.604593 GCAGAAAGGGGCTGAAGCA 60.605 57.895 4.43 0.00 44.36 3.91
1539 2011 2.751436 GCCAGCGAAGAATGGGCA 60.751 61.111 0.00 0.00 36.57 5.36
1568 2040 2.372688 CCCCTCCTGGAAGCCCTA 59.627 66.667 0.00 0.00 35.39 3.53
1790 2262 5.104693 TGTCCATGATATAGTTGTTTCCGGT 60.105 40.000 0.00 0.00 0.00 5.28
1792 2264 6.018180 GTCCATGATATAGTTGTTTCCGGTTC 60.018 42.308 0.00 0.00 0.00 3.62
1815 2287 4.405680 CCAATCTCCATGTCACCTAGTGTA 59.594 45.833 0.00 0.00 34.79 2.90
1823 2295 5.528690 CCATGTCACCTAGTGTAATGAATGG 59.471 44.000 11.41 0.00 33.10 3.16
1880 2353 6.647229 TGATGCTTCAGTCATTCTTATGAGT 58.353 36.000 0.00 0.00 43.64 3.41
2013 2486 4.232221 GTTGAAACTCATTCCATGTGCTG 58.768 43.478 0.00 0.00 37.22 4.41
2016 2489 4.341806 TGAAACTCATTCCATGTGCTGTTT 59.658 37.500 0.00 0.00 37.22 2.83
2017 2490 5.534278 TGAAACTCATTCCATGTGCTGTTTA 59.466 36.000 0.00 0.00 37.22 2.01
2019 2492 5.824904 ACTCATTCCATGTGCTGTTTATC 57.175 39.130 0.00 0.00 0.00 1.75
2020 2493 4.333649 ACTCATTCCATGTGCTGTTTATCG 59.666 41.667 0.00 0.00 0.00 2.92
2046 2519 5.717078 ACAGATAACTACTTTGACACCGA 57.283 39.130 0.00 0.00 0.00 4.69
2062 2535 5.067413 TGACACCGAAGTCTATGGAATCTAC 59.933 44.000 8.35 0.00 39.27 2.59
2067 2548 6.208994 ACCGAAGTCTATGGAATCTACATACC 59.791 42.308 0.00 0.00 0.00 2.73
2216 3142 1.582968 GGCGGTGAAGTACTGACGA 59.417 57.895 0.00 0.00 37.93 4.20
2273 3200 4.655762 TTGCTGCGTAATAGATCAGAGT 57.344 40.909 0.00 0.00 0.00 3.24
2278 3205 4.611943 TGCGTAATAGATCAGAGTGCTTC 58.388 43.478 0.00 0.00 0.00 3.86
2295 3222 3.121544 GCTTCGTTTAATACTCCCTCCG 58.878 50.000 0.00 0.00 0.00 4.63
2314 3241 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2393 3320 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
2404 3331 1.065491 TGCTCCGTACGTAGTCCCTTA 60.065 52.381 15.21 0.00 43.93 2.69
2412 3339 5.218139 CGTACGTAGTCCCTTATTGGAATC 58.782 45.833 7.22 0.00 43.93 2.52
2500 3435 2.639839 AGTGCCTTTAGTGGACAGTCAT 59.360 45.455 2.17 0.00 0.00 3.06
2517 3452 1.486310 TCATGTCAGGGCATACTGGTC 59.514 52.381 0.00 0.00 38.98 4.02
2526 3461 3.527665 AGGGCATACTGGTCACCTTTTAT 59.472 43.478 0.00 0.00 0.00 1.40
2660 3649 6.258947 GGTCTATCTAGCTTGGCTTTTACTTG 59.741 42.308 0.00 0.00 40.44 3.16
2670 3659 7.394359 AGCTTGGCTTTTACTTGAATGAATCTA 59.606 33.333 0.00 0.00 33.89 1.98
2672 3661 9.346725 CTTGGCTTTTACTTGAATGAATCTAAC 57.653 33.333 0.00 0.00 0.00 2.34
2678 3667 8.547967 TTTACTTGAATGAATCTAACGAAGCT 57.452 30.769 0.00 0.00 0.00 3.74
2733 3724 7.503230 TGGTTTACGTCATACTATGGACTATCA 59.497 37.037 0.00 0.00 31.88 2.15
2754 3745 9.234827 CTATCAATTATGACCTTCAATGCCATA 57.765 33.333 0.00 0.00 38.69 2.74
2767 3758 6.500684 TCAATGCCATAAGTCTTGAGAAAC 57.499 37.500 0.00 0.00 0.00 2.78
2782 3773 9.750125 GTCTTGAGAAACCTTCATGTTTATTTT 57.250 29.630 0.00 0.00 38.51 1.82
2915 3906 3.181467 CCTCTCAGCAAGGGTGAATCTAG 60.181 52.174 0.00 0.00 39.59 2.43
2936 3927 7.857456 TCTAGAAGGGTATGCAACTTTCATTA 58.143 34.615 11.76 0.08 0.00 1.90
3071 4133 4.223477 AGGTTACGCTAAATGTTGGGACTA 59.777 41.667 0.00 0.00 0.00 2.59
3092 4154 1.129879 GCATTGTGTCTTGCGCATCG 61.130 55.000 12.75 5.80 37.45 3.84
3281 4343 0.986527 TCAGCAGCTTGAGATGGGAA 59.013 50.000 0.00 0.00 31.02 3.97
3301 4369 0.385029 CTCAGGCTCCTGACTCATCG 59.615 60.000 14.26 0.86 46.80 3.84
3442 4510 0.849417 ATGGCCTTTCCCTGAGATCC 59.151 55.000 3.32 0.00 0.00 3.36
3452 4520 1.133668 CCCTGAGATCCCCAACCAATC 60.134 57.143 0.00 0.00 0.00 2.67
3455 4523 1.912731 TGAGATCCCCAACCAATCGAA 59.087 47.619 0.00 0.00 0.00 3.71
3457 4525 1.064685 AGATCCCCAACCAATCGAACC 60.065 52.381 0.00 0.00 0.00 3.62
3472 4540 1.889829 CGAACCCCAACCAATAGCAAA 59.110 47.619 0.00 0.00 0.00 3.68
3505 4573 4.322080 TGTAGATTGGGATGACTAAGCG 57.678 45.455 0.00 0.00 0.00 4.68
3608 4677 5.414765 CAGTATCCAACCTTAACCTGAAACC 59.585 44.000 0.00 0.00 0.00 3.27
3612 4681 2.551032 CAACCTTAACCTGAAACCCGAC 59.449 50.000 0.00 0.00 0.00 4.79
3635 4704 2.885135 TCCATGCTTGACAAGGTGAT 57.115 45.000 16.80 0.00 38.34 3.06
3655 4724 7.037730 AGGTGATCCTTATCCTGGAATATCAAG 60.038 40.741 0.00 0.00 42.12 3.02
3809 4878 2.301870 ACACACCCTCGCTATTCTTTCA 59.698 45.455 0.00 0.00 0.00 2.69
3854 4924 4.549458 CCCATAGCAGTTTTTGTGTTGAG 58.451 43.478 0.00 0.00 0.00 3.02
3912 4982 5.585390 ACGTGTTATGGGTTCTATTACTCG 58.415 41.667 0.00 0.00 33.23 4.18
3931 5001 2.094026 TCGCTGATTCTGTGCAGTGTAT 60.094 45.455 0.00 0.00 41.89 2.29
3932 5002 2.283617 CGCTGATTCTGTGCAGTGTATC 59.716 50.000 0.00 0.00 37.73 2.24
3985 5055 4.552745 GGCTGCCATTAACGCGCC 62.553 66.667 15.17 12.83 38.22 6.53
4001 5071 1.805254 GCCTCACGCATGCTTGATT 59.195 52.632 25.13 0.00 37.47 2.57
4005 5075 1.736126 CTCACGCATGCTTGATTGACT 59.264 47.619 25.13 0.00 0.00 3.41
4009 5079 3.362831 CACGCATGCTTGATTGACTTTTC 59.637 43.478 18.78 0.00 0.00 2.29
4078 5148 2.982130 ACTGCCGAGTCACCATCC 59.018 61.111 0.00 0.00 0.00 3.51
4081 5151 4.530857 GCCGAGTCACCATCCCCG 62.531 72.222 0.00 0.00 0.00 5.73
4084 5154 1.324740 CCGAGTCACCATCCCCGTAA 61.325 60.000 0.00 0.00 0.00 3.18
4086 5156 1.481871 GAGTCACCATCCCCGTAAGA 58.518 55.000 0.00 0.00 43.02 2.10
4103 5173 3.425162 AAGACATGTTCCCTTCCTCAC 57.575 47.619 0.00 0.00 0.00 3.51
4106 5176 0.036010 CATGTTCCCTTCCTCACGCT 60.036 55.000 0.00 0.00 0.00 5.07
4136 5206 7.272084 GTGCTTCACTTGTATTCATTTGATGTC 59.728 37.037 0.00 0.00 0.00 3.06
4176 5246 2.348666 GTGAATCGTCATGTTCCCTTCG 59.651 50.000 0.00 0.00 35.80 3.79
4268 5341 1.486726 CGGGGTTGGCTCTTCTCTTAT 59.513 52.381 0.00 0.00 0.00 1.73
4269 5342 2.698797 CGGGGTTGGCTCTTCTCTTATA 59.301 50.000 0.00 0.00 0.00 0.98
4314 5387 6.391227 TCTTTGATGACTTTGGGTCTTTTC 57.609 37.500 0.00 0.00 44.74 2.29
4332 5405 4.817318 TTTCCCATACAAAAATGAGCCC 57.183 40.909 0.00 0.00 0.00 5.19
4343 5416 5.983118 ACAAAAATGAGCCCGAACTTTTTAG 59.017 36.000 0.00 0.00 30.28 1.85
4370 5443 0.679002 CCACATCTGCCCACTTCCTG 60.679 60.000 0.00 0.00 0.00 3.86
4474 5554 2.796651 CGCTGAGCTGCAAATCCC 59.203 61.111 1.78 0.00 0.00 3.85
4489 5569 0.264955 ATCCCCGGTGTAGTCCTGAT 59.735 55.000 0.00 0.00 0.00 2.90
4493 5573 1.686325 CCGGTGTAGTCCTGATGGGG 61.686 65.000 0.00 0.00 35.33 4.96
4495 5575 1.580059 GGTGTAGTCCTGATGGGGAA 58.420 55.000 0.00 0.00 37.10 3.97
4498 5578 1.132500 GTAGTCCTGATGGGGAAGGG 58.868 60.000 0.00 0.00 37.10 3.95
4499 5579 0.694444 TAGTCCTGATGGGGAAGGGC 60.694 60.000 0.00 0.00 37.10 5.19
4500 5580 2.003548 GTCCTGATGGGGAAGGGCT 61.004 63.158 0.00 0.00 37.10 5.19
4501 5581 2.002977 TCCTGATGGGGAAGGGCTG 61.003 63.158 0.00 0.00 35.33 4.85
4502 5582 2.002977 CCTGATGGGGAAGGGCTGA 61.003 63.158 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.073816 CAAATACAGACACGTGGGGTC 58.926 52.381 21.57 8.59 35.50 4.46
1 2 1.271163 CCAAATACAGACACGTGGGGT 60.271 52.381 21.57 16.29 0.00 4.95
2 3 1.448985 CCAAATACAGACACGTGGGG 58.551 55.000 21.57 11.02 0.00 4.96
3 4 0.802494 GCCAAATACAGACACGTGGG 59.198 55.000 21.57 11.40 0.00 4.61
4 5 1.464608 CAGCCAAATACAGACACGTGG 59.535 52.381 21.57 4.47 0.00 4.94
5 6 2.143122 ACAGCCAAATACAGACACGTG 58.857 47.619 15.48 15.48 0.00 4.49
6 7 2.413837 GACAGCCAAATACAGACACGT 58.586 47.619 0.00 0.00 0.00 4.49
7 8 1.390123 CGACAGCCAAATACAGACACG 59.610 52.381 0.00 0.00 0.00 4.49
8 9 2.413837 ACGACAGCCAAATACAGACAC 58.586 47.619 0.00 0.00 0.00 3.67
9 10 2.831685 ACGACAGCCAAATACAGACA 57.168 45.000 0.00 0.00 0.00 3.41
10 11 3.496884 TCAAACGACAGCCAAATACAGAC 59.503 43.478 0.00 0.00 0.00 3.51
11 12 3.734463 TCAAACGACAGCCAAATACAGA 58.266 40.909 0.00 0.00 0.00 3.41
12 13 4.393062 AGATCAAACGACAGCCAAATACAG 59.607 41.667 0.00 0.00 0.00 2.74
13 14 4.323417 AGATCAAACGACAGCCAAATACA 58.677 39.130 0.00 0.00 0.00 2.29
14 15 4.631813 AGAGATCAAACGACAGCCAAATAC 59.368 41.667 0.00 0.00 0.00 1.89
15 16 4.832248 AGAGATCAAACGACAGCCAAATA 58.168 39.130 0.00 0.00 0.00 1.40
16 17 3.679389 AGAGATCAAACGACAGCCAAAT 58.321 40.909 0.00 0.00 0.00 2.32
17 18 3.067106 GAGAGATCAAACGACAGCCAAA 58.933 45.455 0.00 0.00 0.00 3.28
18 19 2.612972 GGAGAGATCAAACGACAGCCAA 60.613 50.000 0.00 0.00 0.00 4.52
19 20 1.066858 GGAGAGATCAAACGACAGCCA 60.067 52.381 0.00 0.00 0.00 4.75
20 21 1.646189 GGAGAGATCAAACGACAGCC 58.354 55.000 0.00 0.00 0.00 4.85
21 22 1.066858 TGGGAGAGATCAAACGACAGC 60.067 52.381 0.00 0.00 0.00 4.40
22 23 2.493675 TCTGGGAGAGATCAAACGACAG 59.506 50.000 0.00 0.00 0.00 3.51
23 24 2.525368 TCTGGGAGAGATCAAACGACA 58.475 47.619 0.00 0.00 0.00 4.35
24 25 3.516615 CTTCTGGGAGAGATCAAACGAC 58.483 50.000 0.00 0.00 0.00 4.34
25 26 2.093973 GCTTCTGGGAGAGATCAAACGA 60.094 50.000 0.00 0.00 0.00 3.85
26 27 2.275318 GCTTCTGGGAGAGATCAAACG 58.725 52.381 0.00 0.00 0.00 3.60
27 28 3.340814 TGCTTCTGGGAGAGATCAAAC 57.659 47.619 0.00 0.00 0.00 2.93
28 29 3.520721 TGATGCTTCTGGGAGAGATCAAA 59.479 43.478 0.00 0.00 0.00 2.69
29 30 3.109928 TGATGCTTCTGGGAGAGATCAA 58.890 45.455 0.00 0.00 0.00 2.57
30 31 2.755686 TGATGCTTCTGGGAGAGATCA 58.244 47.619 0.00 0.00 0.00 2.92
31 32 3.118482 TGTTGATGCTTCTGGGAGAGATC 60.118 47.826 0.88 0.00 0.00 2.75
32 33 2.842496 TGTTGATGCTTCTGGGAGAGAT 59.158 45.455 0.88 0.00 0.00 2.75
33 34 2.259917 TGTTGATGCTTCTGGGAGAGA 58.740 47.619 0.88 0.00 0.00 3.10
34 35 2.775911 TGTTGATGCTTCTGGGAGAG 57.224 50.000 0.88 0.00 0.00 3.20
35 36 2.639347 TCTTGTTGATGCTTCTGGGAGA 59.361 45.455 0.88 0.00 0.00 3.71
36 37 3.063510 TCTTGTTGATGCTTCTGGGAG 57.936 47.619 0.88 0.00 0.00 4.30
37 38 3.726557 ATCTTGTTGATGCTTCTGGGA 57.273 42.857 0.88 0.00 33.43 4.37
38 39 4.219070 TGAAATCTTGTTGATGCTTCTGGG 59.781 41.667 0.88 0.00 35.21 4.45
39 40 5.381174 TGAAATCTTGTTGATGCTTCTGG 57.619 39.130 0.88 0.00 35.21 3.86
40 41 6.210796 TGTTGAAATCTTGTTGATGCTTCTG 58.789 36.000 0.88 0.00 35.21 3.02
41 42 6.395426 TGTTGAAATCTTGTTGATGCTTCT 57.605 33.333 0.88 0.00 35.21 2.85
42 43 8.922058 ATATGTTGAAATCTTGTTGATGCTTC 57.078 30.769 0.00 0.00 35.21 3.86
43 44 9.715121 AAATATGTTGAAATCTTGTTGATGCTT 57.285 25.926 0.00 0.00 35.21 3.91
68 69 8.455682 CGACCCTAGAGCAAAATAAACAAATAA 58.544 33.333 0.00 0.00 0.00 1.40
69 70 7.825270 TCGACCCTAGAGCAAAATAAACAAATA 59.175 33.333 0.00 0.00 0.00 1.40
70 71 6.657541 TCGACCCTAGAGCAAAATAAACAAAT 59.342 34.615 0.00 0.00 0.00 2.32
71 72 5.998981 TCGACCCTAGAGCAAAATAAACAAA 59.001 36.000 0.00 0.00 0.00 2.83
72 73 5.553123 TCGACCCTAGAGCAAAATAAACAA 58.447 37.500 0.00 0.00 0.00 2.83
73 74 5.155278 TCGACCCTAGAGCAAAATAAACA 57.845 39.130 0.00 0.00 0.00 2.83
74 75 6.049790 AGATCGACCCTAGAGCAAAATAAAC 58.950 40.000 0.00 0.00 0.00 2.01
75 76 6.235231 AGATCGACCCTAGAGCAAAATAAA 57.765 37.500 0.00 0.00 0.00 1.40
76 77 5.871396 AGATCGACCCTAGAGCAAAATAA 57.129 39.130 0.00 0.00 0.00 1.40
77 78 5.871396 AAGATCGACCCTAGAGCAAAATA 57.129 39.130 0.00 0.00 0.00 1.40
78 79 4.762289 AAGATCGACCCTAGAGCAAAAT 57.238 40.909 0.00 0.00 0.00 1.82
79 80 4.553330 AAAGATCGACCCTAGAGCAAAA 57.447 40.909 0.00 0.00 0.00 2.44
80 81 4.954202 TCTAAAGATCGACCCTAGAGCAAA 59.046 41.667 0.00 0.00 0.00 3.68
81 82 4.533815 TCTAAAGATCGACCCTAGAGCAA 58.466 43.478 0.00 0.00 0.00 3.91
82 83 4.138290 CTCTAAAGATCGACCCTAGAGCA 58.862 47.826 1.53 0.00 31.82 4.26
83 84 3.504520 CCTCTAAAGATCGACCCTAGAGC 59.495 52.174 7.69 0.00 36.03 4.09
84 85 3.504520 GCCTCTAAAGATCGACCCTAGAG 59.495 52.174 6.56 6.56 36.77 2.43
85 86 3.117625 TGCCTCTAAAGATCGACCCTAGA 60.118 47.826 0.00 0.00 0.00 2.43
86 87 3.223435 TGCCTCTAAAGATCGACCCTAG 58.777 50.000 0.00 0.00 0.00 3.02
87 88 3.308035 TGCCTCTAAAGATCGACCCTA 57.692 47.619 0.00 0.00 0.00 3.53
88 89 2.160721 TGCCTCTAAAGATCGACCCT 57.839 50.000 0.00 0.00 0.00 4.34
89 90 2.093658 TGTTGCCTCTAAAGATCGACCC 60.094 50.000 0.00 0.00 0.00 4.46
90 91 3.247006 TGTTGCCTCTAAAGATCGACC 57.753 47.619 0.00 0.00 0.00 4.79
91 92 3.060895 CGTTGTTGCCTCTAAAGATCGAC 59.939 47.826 0.00 0.00 0.00 4.20
92 93 3.057104 TCGTTGTTGCCTCTAAAGATCGA 60.057 43.478 0.00 0.00 0.00 3.59
93 94 3.250744 TCGTTGTTGCCTCTAAAGATCG 58.749 45.455 0.00 0.00 0.00 3.69
94 95 5.563842 CATTCGTTGTTGCCTCTAAAGATC 58.436 41.667 0.00 0.00 0.00 2.75
95 96 4.142600 GCATTCGTTGTTGCCTCTAAAGAT 60.143 41.667 0.00 0.00 32.66 2.40
96 97 3.188460 GCATTCGTTGTTGCCTCTAAAGA 59.812 43.478 0.00 0.00 32.66 2.52
97 98 3.189287 AGCATTCGTTGTTGCCTCTAAAG 59.811 43.478 0.00 0.00 39.72 1.85
98 99 3.146066 AGCATTCGTTGTTGCCTCTAAA 58.854 40.909 0.00 0.00 39.72 1.85
99 100 2.778299 AGCATTCGTTGTTGCCTCTAA 58.222 42.857 0.00 0.00 39.72 2.10
100 101 2.472695 AGCATTCGTTGTTGCCTCTA 57.527 45.000 0.00 0.00 39.72 2.43
101 102 2.472695 TAGCATTCGTTGTTGCCTCT 57.527 45.000 0.00 0.00 39.72 3.69
102 103 2.792542 GCATAGCATTCGTTGTTGCCTC 60.793 50.000 0.00 0.00 39.72 4.70
103 104 1.133025 GCATAGCATTCGTTGTTGCCT 59.867 47.619 0.00 0.00 39.72 4.75
104 105 1.135431 TGCATAGCATTCGTTGTTGCC 60.135 47.619 0.00 0.00 39.72 4.52
105 106 2.261037 TGCATAGCATTCGTTGTTGC 57.739 45.000 0.00 0.00 39.17 4.17
121 122 1.279558 AGCCCAAAATCATGCAATGCA 59.720 42.857 11.44 11.44 46.21 3.96
122 123 2.032680 AGCCCAAAATCATGCAATGC 57.967 45.000 0.00 0.00 46.21 3.56
124 125 4.023726 ACAAAGCCCAAAATCATGCAAT 57.976 36.364 0.00 0.00 0.00 3.56
125 126 3.488778 ACAAAGCCCAAAATCATGCAA 57.511 38.095 0.00 0.00 0.00 4.08
126 127 3.181457 TGAACAAAGCCCAAAATCATGCA 60.181 39.130 0.00 0.00 0.00 3.96
127 128 3.401182 TGAACAAAGCCCAAAATCATGC 58.599 40.909 0.00 0.00 0.00 4.06
128 129 4.885413 TCTGAACAAAGCCCAAAATCATG 58.115 39.130 0.00 0.00 0.00 3.07
129 130 4.020839 CCTCTGAACAAAGCCCAAAATCAT 60.021 41.667 0.00 0.00 0.00 2.45
130 131 3.321682 CCTCTGAACAAAGCCCAAAATCA 59.678 43.478 0.00 0.00 0.00 2.57
131 132 3.862264 GCCTCTGAACAAAGCCCAAAATC 60.862 47.826 0.00 0.00 0.00 2.17
132 133 2.037641 GCCTCTGAACAAAGCCCAAAAT 59.962 45.455 0.00 0.00 0.00 1.82
133 134 1.412343 GCCTCTGAACAAAGCCCAAAA 59.588 47.619 0.00 0.00 0.00 2.44
134 135 1.039856 GCCTCTGAACAAAGCCCAAA 58.960 50.000 0.00 0.00 0.00 3.28
135 136 0.106268 TGCCTCTGAACAAAGCCCAA 60.106 50.000 0.00 0.00 0.00 4.12
136 137 0.106268 TTGCCTCTGAACAAAGCCCA 60.106 50.000 0.00 0.00 0.00 5.36
137 138 0.600057 CTTGCCTCTGAACAAAGCCC 59.400 55.000 0.00 0.00 0.00 5.19
138 139 1.609208 TCTTGCCTCTGAACAAAGCC 58.391 50.000 0.00 0.00 0.00 4.35
139 140 2.555757 ACATCTTGCCTCTGAACAAAGC 59.444 45.455 0.00 0.00 0.00 3.51
140 141 3.057736 CCACATCTTGCCTCTGAACAAAG 60.058 47.826 0.00 0.00 0.00 2.77
141 142 2.886523 CCACATCTTGCCTCTGAACAAA 59.113 45.455 0.00 0.00 0.00 2.83
142 143 2.507484 CCACATCTTGCCTCTGAACAA 58.493 47.619 0.00 0.00 0.00 2.83
143 144 1.271543 CCCACATCTTGCCTCTGAACA 60.272 52.381 0.00 0.00 0.00 3.18
144 145 1.457346 CCCACATCTTGCCTCTGAAC 58.543 55.000 0.00 0.00 0.00 3.18
145 146 0.329261 CCCCACATCTTGCCTCTGAA 59.671 55.000 0.00 0.00 0.00 3.02
146 147 1.993653 CCCCACATCTTGCCTCTGA 59.006 57.895 0.00 0.00 0.00 3.27
147 148 1.751927 GCCCCACATCTTGCCTCTG 60.752 63.158 0.00 0.00 0.00 3.35
148 149 2.679716 GCCCCACATCTTGCCTCT 59.320 61.111 0.00 0.00 0.00 3.69
149 150 2.440980 GGCCCCACATCTTGCCTC 60.441 66.667 0.00 0.00 40.77 4.70
151 152 1.152881 CTAGGCCCCACATCTTGCC 60.153 63.158 0.00 0.00 44.35 4.52
152 153 1.152881 CCTAGGCCCCACATCTTGC 60.153 63.158 0.00 0.00 0.00 4.01
153 154 0.625849 AACCTAGGCCCCACATCTTG 59.374 55.000 9.30 0.00 0.00 3.02
154 155 2.127708 CTAACCTAGGCCCCACATCTT 58.872 52.381 9.30 0.00 0.00 2.40
155 156 1.294068 TCTAACCTAGGCCCCACATCT 59.706 52.381 9.30 0.00 0.00 2.90
156 157 1.694696 CTCTAACCTAGGCCCCACATC 59.305 57.143 9.30 0.00 0.00 3.06
157 158 1.294068 TCTCTAACCTAGGCCCCACAT 59.706 52.381 9.30 0.00 0.00 3.21
158 159 0.714180 TCTCTAACCTAGGCCCCACA 59.286 55.000 9.30 0.00 0.00 4.17
159 160 1.121378 GTCTCTAACCTAGGCCCCAC 58.879 60.000 9.30 0.00 0.00 4.61
160 161 0.714180 TGTCTCTAACCTAGGCCCCA 59.286 55.000 9.30 0.00 0.00 4.96
161 162 1.415200 CTGTCTCTAACCTAGGCCCC 58.585 60.000 9.30 0.00 0.00 5.80
162 163 0.753867 GCTGTCTCTAACCTAGGCCC 59.246 60.000 9.30 0.00 0.00 5.80
163 164 1.410882 CAGCTGTCTCTAACCTAGGCC 59.589 57.143 9.30 0.00 0.00 5.19
164 165 2.360801 CTCAGCTGTCTCTAACCTAGGC 59.639 54.545 14.67 0.00 0.00 3.93
165 166 2.360801 GCTCAGCTGTCTCTAACCTAGG 59.639 54.545 14.67 7.41 0.00 3.02
166 167 2.360801 GGCTCAGCTGTCTCTAACCTAG 59.639 54.545 14.67 0.17 0.00 3.02
167 168 2.024846 AGGCTCAGCTGTCTCTAACCTA 60.025 50.000 14.67 0.00 0.00 3.08
168 169 1.190643 GGCTCAGCTGTCTCTAACCT 58.809 55.000 14.67 0.00 0.00 3.50
169 170 1.136110 GAGGCTCAGCTGTCTCTAACC 59.864 57.143 14.67 6.00 0.00 2.85
170 171 2.099405 AGAGGCTCAGCTGTCTCTAAC 58.901 52.381 24.39 10.06 35.13 2.34
171 172 2.523325 AGAGGCTCAGCTGTCTCTAA 57.477 50.000 24.39 3.38 35.13 2.10
172 173 3.874383 ATAGAGGCTCAGCTGTCTCTA 57.126 47.619 28.23 28.23 41.33 2.43
173 174 2.754012 ATAGAGGCTCAGCTGTCTCT 57.246 50.000 26.72 26.72 39.57 3.10
174 175 3.004315 GTGTATAGAGGCTCAGCTGTCTC 59.996 52.174 18.26 17.62 0.00 3.36
175 176 2.955660 GTGTATAGAGGCTCAGCTGTCT 59.044 50.000 18.26 11.57 0.00 3.41
176 177 2.955660 AGTGTATAGAGGCTCAGCTGTC 59.044 50.000 18.26 3.54 0.00 3.51
177 178 2.692557 CAGTGTATAGAGGCTCAGCTGT 59.307 50.000 18.26 0.00 0.00 4.40
178 179 2.545532 GCAGTGTATAGAGGCTCAGCTG 60.546 54.545 18.26 7.63 0.00 4.24
179 180 1.686052 GCAGTGTATAGAGGCTCAGCT 59.314 52.381 18.26 2.98 0.00 4.24
180 181 1.686052 AGCAGTGTATAGAGGCTCAGC 59.314 52.381 18.26 7.12 0.00 4.26
181 182 2.954989 TCAGCAGTGTATAGAGGCTCAG 59.045 50.000 18.26 0.00 31.30 3.35
182 183 3.018423 TCAGCAGTGTATAGAGGCTCA 57.982 47.619 18.26 3.05 31.30 4.26
183 184 3.860378 GCATCAGCAGTGTATAGAGGCTC 60.860 52.174 6.34 6.34 41.58 4.70
184 185 2.036992 GCATCAGCAGTGTATAGAGGCT 59.963 50.000 0.00 0.00 41.58 4.58
185 186 2.411904 GCATCAGCAGTGTATAGAGGC 58.588 52.381 0.00 0.00 41.58 4.70
186 187 2.289320 GGGCATCAGCAGTGTATAGAGG 60.289 54.545 0.00 0.00 44.61 3.69
187 188 2.632028 AGGGCATCAGCAGTGTATAGAG 59.368 50.000 0.00 0.00 44.61 2.43
188 189 2.366590 CAGGGCATCAGCAGTGTATAGA 59.633 50.000 0.00 0.00 44.61 1.98
189 190 2.366590 TCAGGGCATCAGCAGTGTATAG 59.633 50.000 0.00 0.00 44.61 1.31
190 191 2.397597 TCAGGGCATCAGCAGTGTATA 58.602 47.619 0.00 0.00 44.61 1.47
191 192 1.206878 TCAGGGCATCAGCAGTGTAT 58.793 50.000 0.00 0.00 44.61 2.29
192 193 1.134310 CATCAGGGCATCAGCAGTGTA 60.134 52.381 0.00 0.00 44.61 2.90
193 194 0.393944 CATCAGGGCATCAGCAGTGT 60.394 55.000 0.00 0.00 44.61 3.55
194 195 1.101635 CCATCAGGGCATCAGCAGTG 61.102 60.000 0.00 0.00 44.61 3.66
195 196 1.226542 CCATCAGGGCATCAGCAGT 59.773 57.895 0.00 0.00 44.61 4.40
196 197 4.159266 CCATCAGGGCATCAGCAG 57.841 61.111 0.00 0.00 44.61 4.24
213 214 1.624312 GTATGAGCCCTAGGGTTAGCC 59.376 57.143 28.96 12.05 37.65 3.93
214 215 2.300437 CTGTATGAGCCCTAGGGTTAGC 59.700 54.545 28.96 14.46 37.65 3.09
215 216 3.845860 TCTGTATGAGCCCTAGGGTTAG 58.154 50.000 28.96 16.42 37.65 2.34
216 217 3.985553 TCTGTATGAGCCCTAGGGTTA 57.014 47.619 28.96 15.61 37.65 2.85
217 218 2.868964 TCTGTATGAGCCCTAGGGTT 57.131 50.000 28.96 24.22 37.65 4.11
218 219 2.683768 CTTCTGTATGAGCCCTAGGGT 58.316 52.381 28.96 15.71 37.65 4.34
219 220 1.346068 GCTTCTGTATGAGCCCTAGGG 59.654 57.143 24.89 24.89 38.57 3.53
220 221 1.346068 GGCTTCTGTATGAGCCCTAGG 59.654 57.143 0.06 0.06 41.28 3.02
221 222 2.042464 TGGCTTCTGTATGAGCCCTAG 58.958 52.381 11.48 0.00 46.14 3.02
222 223 1.762957 GTGGCTTCTGTATGAGCCCTA 59.237 52.381 11.48 0.00 46.14 3.53
223 224 0.543749 GTGGCTTCTGTATGAGCCCT 59.456 55.000 11.48 0.00 46.14 5.19
224 225 0.811616 CGTGGCTTCTGTATGAGCCC 60.812 60.000 11.48 3.04 46.14 5.19
225 226 1.432270 GCGTGGCTTCTGTATGAGCC 61.432 60.000 7.41 7.41 46.82 4.70
226 227 1.432270 GGCGTGGCTTCTGTATGAGC 61.432 60.000 0.00 0.00 0.00 4.26
227 228 0.811616 GGGCGTGGCTTCTGTATGAG 60.812 60.000 0.00 0.00 0.00 2.90
228 229 1.220749 GGGCGTGGCTTCTGTATGA 59.779 57.895 0.00 0.00 0.00 2.15
229 230 1.819632 GGGGCGTGGCTTCTGTATG 60.820 63.158 0.00 0.00 0.00 2.39
230 231 2.590092 GGGGCGTGGCTTCTGTAT 59.410 61.111 0.00 0.00 0.00 2.29
231 232 4.077184 CGGGGCGTGGCTTCTGTA 62.077 66.667 0.00 0.00 0.00 2.74
294 295 2.897969 TGTTGTTACCCTCTGTCTCCTC 59.102 50.000 0.00 0.00 0.00 3.71
319 320 3.059120 TCGCGTTTATCCTCTCGTGATAG 60.059 47.826 5.77 0.00 37.77 2.08
325 326 1.189403 GTGTCGCGTTTATCCTCTCG 58.811 55.000 5.77 0.00 0.00 4.04
369 370 1.083015 CGGTTTTCTTGCCACGTCG 60.083 57.895 0.00 0.00 0.00 5.12
372 373 2.642700 CCCGGTTTTCTTGCCACG 59.357 61.111 0.00 0.00 0.00 4.94
377 378 3.528597 TTTTTGTCCCCGGTTTTCTTG 57.471 42.857 0.00 0.00 0.00 3.02
427 428 0.744414 CGGTTTGGGCGACTGATCAT 60.744 55.000 0.00 0.00 0.00 2.45
433 434 1.740296 CGATTCGGTTTGGGCGACT 60.740 57.895 0.00 0.00 0.00 4.18
476 477 7.510549 TGAAATTTTGAAAGGAAGACGATCT 57.489 32.000 0.00 0.00 0.00 2.75
477 478 8.748380 AATGAAATTTTGAAAGGAAGACGATC 57.252 30.769 0.00 0.00 26.74 3.69
502 504 3.690139 TGCCTCGAGTTTTGTTGTTGTTA 59.310 39.130 12.31 0.00 0.00 2.41
511 513 4.027572 TGAAACTTTGCCTCGAGTTTTG 57.972 40.909 12.31 0.00 43.88 2.44
516 518 1.229428 TGCTGAAACTTTGCCTCGAG 58.771 50.000 5.13 5.13 0.00 4.04
546 548 7.277539 CGAACCCATTTTACACATGCAAAATAT 59.722 33.333 10.99 1.76 33.66 1.28
823 840 0.604780 CTCTGTGGCCTGTGGAGTTG 60.605 60.000 3.32 0.00 0.00 3.16
825 842 0.546267 ATCTCTGTGGCCTGTGGAGT 60.546 55.000 3.32 0.00 0.00 3.85
830 847 0.323816 TCGAGATCTCTGTGGCCTGT 60.324 55.000 20.26 0.00 0.00 4.00
1005 1474 3.262686 GCGGCGAATCGGAAGGAC 61.263 66.667 12.98 0.00 0.00 3.85
1147 1616 7.438160 CCATTCGACAAGACAATACAAGCTATA 59.562 37.037 0.00 0.00 0.00 1.31
1148 1617 6.258727 CCATTCGACAAGACAATACAAGCTAT 59.741 38.462 0.00 0.00 0.00 2.97
1149 1618 5.580691 CCATTCGACAAGACAATACAAGCTA 59.419 40.000 0.00 0.00 0.00 3.32
1150 1619 4.393062 CCATTCGACAAGACAATACAAGCT 59.607 41.667 0.00 0.00 0.00 3.74
1187 1659 1.867233 CAAAGCCCGTCCATATTCTCG 59.133 52.381 0.00 0.00 0.00 4.04
1201 1673 5.009610 TCAAGACAACCACTAAATCAAAGCC 59.990 40.000 0.00 0.00 0.00 4.35
1282 1754 1.667830 CAGTTCTTTCGAGGCGGCA 60.668 57.895 13.08 0.00 0.00 5.69
1299 1771 1.065491 CCGGAGTTGATGATTGTCCCA 60.065 52.381 0.00 0.00 0.00 4.37
1303 1775 1.340017 CCCACCGGAGTTGATGATTGT 60.340 52.381 9.46 0.00 0.00 2.71
1307 1779 0.838554 TTCCCCACCGGAGTTGATGA 60.839 55.000 9.46 0.00 43.39 2.92
1312 1784 1.229853 AGGATTCCCCACCGGAGTT 60.230 57.895 9.46 0.00 43.39 3.01
1336 1808 3.380320 GTGTTTTCTGGTGCTGTTTACCT 59.620 43.478 0.00 0.00 39.01 3.08
1393 1865 2.426261 GGCGTTTGCGTCGTTTCC 60.426 61.111 0.00 0.00 44.10 3.13
1399 1871 4.322385 GGTGGTGGCGTTTGCGTC 62.322 66.667 0.00 0.00 44.10 5.19
1501 1973 2.644212 CGGCTGTGCAGAGACCTCT 61.644 63.158 16.28 0.00 41.37 3.69
1558 2030 2.647299 TCCAGTTGATTTAGGGCTTCCA 59.353 45.455 0.00 0.00 0.00 3.53
1568 2040 3.245052 CCTGAACCTCCTCCAGTTGATTT 60.245 47.826 0.00 0.00 0.00 2.17
1790 2262 4.080919 CACTAGGTGACATGGAGATTGGAA 60.081 45.833 0.00 0.00 35.23 3.53
1792 2264 3.198635 ACACTAGGTGACATGGAGATTGG 59.801 47.826 4.62 0.00 36.96 3.16
1815 2287 6.549433 AACCTTTATGCATCACCATTCATT 57.451 33.333 0.19 0.00 0.00 2.57
1823 2295 7.593825 AGTTACAAGAAACCTTTATGCATCAC 58.406 34.615 0.19 0.00 0.00 3.06
1880 2353 2.932663 GCTACAGCTCAAGCCAACA 58.067 52.632 5.65 0.00 43.38 3.33
2016 2489 8.953313 TGTCAAAGTAGTTATCTGTTCTCGATA 58.047 33.333 0.00 0.00 0.00 2.92
2017 2490 7.755822 GTGTCAAAGTAGTTATCTGTTCTCGAT 59.244 37.037 0.00 0.00 0.00 3.59
2019 2492 6.308282 GGTGTCAAAGTAGTTATCTGTTCTCG 59.692 42.308 0.00 0.00 0.00 4.04
2020 2493 6.308282 CGGTGTCAAAGTAGTTATCTGTTCTC 59.692 42.308 0.00 0.00 0.00 2.87
2046 2519 5.538813 TGCGGTATGTAGATTCCATAGACTT 59.461 40.000 0.00 0.00 0.00 3.01
2062 2535 5.106442 TGTCAGTATTACTTGTGCGGTATG 58.894 41.667 0.00 0.00 0.00 2.39
2067 2548 7.700322 AAGATATGTCAGTATTACTTGTGCG 57.300 36.000 0.00 0.00 0.00 5.34
2176 2842 6.064717 GCCTCACTATATTTCCAAATGGACT 58.935 40.000 0.54 0.00 45.39 3.85
2199 3125 0.456312 CCTCGTCAGTACTTCACCGC 60.456 60.000 0.00 0.00 0.00 5.68
2200 3126 0.879765 ACCTCGTCAGTACTTCACCG 59.120 55.000 0.00 0.00 0.00 4.94
2216 3142 4.164988 AGCTCCTTCAAGCACAATATACCT 59.835 41.667 0.00 0.00 45.00 3.08
2251 3177 4.805719 CACTCTGATCTATTACGCAGCAAA 59.194 41.667 0.00 0.00 0.00 3.68
2252 3178 4.363138 CACTCTGATCTATTACGCAGCAA 58.637 43.478 0.00 0.00 0.00 3.91
2253 3179 3.796844 GCACTCTGATCTATTACGCAGCA 60.797 47.826 0.00 0.00 0.00 4.41
2259 3185 8.630278 TTAAACGAAGCACTCTGATCTATTAC 57.370 34.615 0.00 0.00 0.00 1.89
2263 3189 7.997482 AGTATTAAACGAAGCACTCTGATCTA 58.003 34.615 0.00 0.00 0.00 1.98
2273 3200 3.429822 CGGAGGGAGTATTAAACGAAGCA 60.430 47.826 0.00 0.00 0.00 3.91
2278 3205 4.752146 AGAAACGGAGGGAGTATTAAACG 58.248 43.478 0.00 0.00 0.00 3.60
2369 3296 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2393 3320 5.793030 AGAGATTCCAATAAGGGACTACG 57.207 43.478 0.00 0.00 38.49 3.51
2500 3435 0.613260 GTGACCAGTATGCCCTGACA 59.387 55.000 0.00 0.00 34.23 3.58
2605 3541 2.983296 AGCTAGGAGGAATGCTACCAT 58.017 47.619 0.00 0.00 33.64 3.55
2660 3649 9.774742 AAACATAAAGCTTCGTTAGATTCATTC 57.225 29.630 0.00 0.00 29.38 2.67
2670 3659 7.220108 GTGAGAAAACAAACATAAAGCTTCGTT 59.780 33.333 0.00 0.90 0.00 3.85
2672 3661 6.690957 TGTGAGAAAACAAACATAAAGCTTCG 59.309 34.615 0.00 0.00 0.00 3.79
2733 3724 7.781693 AGACTTATGGCATTGAAGGTCATAATT 59.218 33.333 15.85 11.26 40.75 1.40
2754 3745 8.697507 ATAAACATGAAGGTTTCTCAAGACTT 57.302 30.769 0.00 0.00 41.07 3.01
2782 3773 1.202639 TCCACTTGAAGCTGCGAGAAA 60.203 47.619 16.66 0.00 0.00 2.52
2915 3906 6.759497 ACTAATGAAAGTTGCATACCCTTC 57.241 37.500 0.00 0.00 0.00 3.46
2947 3939 6.036735 GTGCGCCAAAAAGATAACAGATACTA 59.963 38.462 4.18 0.00 0.00 1.82
2953 3945 3.236816 CAGTGCGCCAAAAAGATAACAG 58.763 45.455 4.18 0.00 0.00 3.16
2963 3955 2.441164 AACCACCAGTGCGCCAAA 60.441 55.556 4.18 0.00 0.00 3.28
3071 4133 0.599558 ATGCGCAAGACACAATGCTT 59.400 45.000 17.11 0.00 40.39 3.91
3092 4154 1.410153 CCAATCATAAACTGGCTGCCC 59.590 52.381 17.53 0.00 0.00 5.36
3127 4189 4.330074 GTCGTTGCATAAGATGTAAGCTGT 59.670 41.667 0.00 0.00 35.55 4.40
3178 4240 2.038387 AGACAAGCGTGAAAACACCT 57.962 45.000 6.65 0.00 0.00 4.00
3301 4369 2.798145 GCTTGTAGTGTTGTTTGCACCC 60.798 50.000 0.00 0.00 37.56 4.61
3433 4501 1.475751 CGATTGGTTGGGGATCTCAGG 60.476 57.143 0.00 0.00 0.00 3.86
3442 4510 0.540830 TTGGGGTTCGATTGGTTGGG 60.541 55.000 0.00 0.00 0.00 4.12
3452 4520 1.540267 TTGCTATTGGTTGGGGTTCG 58.460 50.000 0.00 0.00 0.00 3.95
3455 4523 2.525368 GTCTTTGCTATTGGTTGGGGT 58.475 47.619 0.00 0.00 0.00 4.95
3457 4525 1.472480 CCGTCTTTGCTATTGGTTGGG 59.528 52.381 0.00 0.00 0.00 4.12
3472 4540 2.634940 CCAATCTACATCCCATCCGTCT 59.365 50.000 0.00 0.00 0.00 4.18
3505 4573 5.182001 ACAAGTCCTTCAACATTATGCTGTC 59.818 40.000 0.00 0.00 0.00 3.51
3608 4677 1.143838 TCAAGCATGGATCCGTCGG 59.856 57.895 2.53 4.39 0.00 4.79
3612 4681 1.019673 CCTTGTCAAGCATGGATCCG 58.980 55.000 7.39 0.00 43.04 4.18
3635 4704 4.289672 GCCCTTGATATTCCAGGATAAGGA 59.710 45.833 14.16 0.00 36.23 3.36
3655 4724 2.870411 CCGTACTAATACAAGCAAGCCC 59.130 50.000 0.00 0.00 0.00 5.19
3694 4763 8.597662 TCAGCTCGTAAACAAAATTACTAGTT 57.402 30.769 0.00 0.00 33.45 2.24
3749 4818 6.423182 AGAGCTATGGTATTACAGCCAAAAA 58.577 36.000 0.00 0.00 38.38 1.94
3912 4982 2.283617 CGATACACTGCACAGAATCAGC 59.716 50.000 4.31 0.00 33.80 4.26
3931 5001 2.340809 CTGCCCCAACGTACACGA 59.659 61.111 9.04 0.00 43.02 4.35
3932 5002 2.495366 TAGCTGCCCCAACGTACACG 62.495 60.000 0.00 0.00 46.33 4.49
3985 5055 1.736126 AGTCAATCAAGCATGCGTGAG 59.264 47.619 33.72 23.91 37.80 3.51
3990 5060 4.801891 TCAGAAAAGTCAATCAAGCATGC 58.198 39.130 10.51 10.51 0.00 4.06
4078 5148 2.629051 GAAGGGAACATGTCTTACGGG 58.371 52.381 0.00 0.00 0.00 5.28
4081 5151 4.254492 GTGAGGAAGGGAACATGTCTTAC 58.746 47.826 0.00 0.00 0.00 2.34
4084 5154 1.276421 CGTGAGGAAGGGAACATGTCT 59.724 52.381 0.00 0.00 0.00 3.41
4086 5156 0.321653 GCGTGAGGAAGGGAACATGT 60.322 55.000 0.00 0.00 0.00 3.21
4103 5173 0.940126 ACAAGTGAAGCACAGAAGCG 59.060 50.000 0.00 0.00 40.15 4.68
4106 5176 6.882610 AATGAATACAAGTGAAGCACAGAA 57.117 33.333 0.00 0.00 36.74 3.02
4136 5206 7.217636 CGATTCACAGCTAGTCAAATCAAAATG 59.782 37.037 14.38 0.00 32.65 2.32
4314 5387 2.374184 TCGGGCTCATTTTTGTATGGG 58.626 47.619 0.00 0.00 0.00 4.00
4318 5391 5.523438 AAAAGTTCGGGCTCATTTTTGTA 57.477 34.783 0.00 0.00 0.00 2.41
4332 5405 9.893305 AGATGTGGTTTAAATCTAAAAAGTTCG 57.107 29.630 0.00 0.00 0.00 3.95
4343 5416 3.763897 AGTGGGCAGATGTGGTTTAAATC 59.236 43.478 0.00 0.00 0.00 2.17
4474 5554 1.686325 CCCCATCAGGACTACACCGG 61.686 65.000 0.00 0.00 38.24 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.