Multiple sequence alignment - TraesCS1B01G310400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G310400 chr1B 100.000 2461 0 0 1 2461 533405182 533407642 0.000000e+00 4545
1 TraesCS1B01G310400 chr1B 99.249 666 5 0 1795 2460 614773036 614773701 0.000000e+00 1203
2 TraesCS1B01G310400 chr1B 87.269 487 39 11 1 479 551719595 551720066 3.600000e-148 534
3 TraesCS1B01G310400 chr1A 90.327 1313 98 13 501 1794 495283858 495285160 0.000000e+00 1694
4 TraesCS1B01G310400 chr1D 91.081 1110 62 14 480 1569 398043997 398045089 0.000000e+00 1467
5 TraesCS1B01G310400 chr1D 96.218 476 16 2 1 475 204385542 204385068 0.000000e+00 778
6 TraesCS1B01G310400 chr1D 95.062 486 22 2 1 485 345276298 345275814 0.000000e+00 763
7 TraesCS1B01G310400 chr1D 86.522 230 16 8 1565 1794 398045143 398045357 3.160000e-59 239
8 TraesCS1B01G310400 chr4B 99.251 668 5 0 1794 2461 476653576 476652909 0.000000e+00 1206
9 TraesCS1B01G310400 chr6B 99.250 667 5 0 1795 2461 684019953 684020619 0.000000e+00 1205
10 TraesCS1B01G310400 chr6B 98.240 682 8 3 1782 2461 696577246 696577925 0.000000e+00 1190
11 TraesCS1B01G310400 chr5B 99.250 667 5 0 1795 2461 583240467 583239801 0.000000e+00 1205
12 TraesCS1B01G310400 chr5B 99.102 668 6 0 1794 2461 31247305 31246638 0.000000e+00 1201
13 TraesCS1B01G310400 chr5B 99.371 477 3 0 1 477 451178778 451179254 0.000000e+00 865
14 TraesCS1B01G310400 chr7B 99.249 666 5 0 1795 2460 495312734 495313399 0.000000e+00 1203
15 TraesCS1B01G310400 chr3B 99.102 668 6 0 1794 2461 780808955 780808288 0.000000e+00 1201
16 TraesCS1B01G310400 chr4A 98.952 668 7 0 1794 2461 738979980 738979313 0.000000e+00 1195
17 TraesCS1B01G310400 chr7A 99.370 476 3 0 1 476 219858631 219859106 0.000000e+00 863
18 TraesCS1B01G310400 chr2A 98.742 477 6 0 1 477 69265338 69265814 0.000000e+00 848
19 TraesCS1B01G310400 chr2D 94.979 478 22 2 1 477 602692579 602692103 0.000000e+00 749
20 TraesCS1B01G310400 chr5D 94.792 480 23 2 1 479 367408445 367408923 0.000000e+00 747
21 TraesCS1B01G310400 chr5D 81.504 492 68 16 5 485 119495574 119495095 1.380000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G310400 chr1B 533405182 533407642 2460 False 4545 4545 100.0000 1 2461 1 chr1B.!!$F1 2460
1 TraesCS1B01G310400 chr1B 614773036 614773701 665 False 1203 1203 99.2490 1795 2460 1 chr1B.!!$F3 665
2 TraesCS1B01G310400 chr1A 495283858 495285160 1302 False 1694 1694 90.3270 501 1794 1 chr1A.!!$F1 1293
3 TraesCS1B01G310400 chr1D 398043997 398045357 1360 False 853 1467 88.8015 480 1794 2 chr1D.!!$F1 1314
4 TraesCS1B01G310400 chr4B 476652909 476653576 667 True 1206 1206 99.2510 1794 2461 1 chr4B.!!$R1 667
5 TraesCS1B01G310400 chr6B 684019953 684020619 666 False 1205 1205 99.2500 1795 2461 1 chr6B.!!$F1 666
6 TraesCS1B01G310400 chr6B 696577246 696577925 679 False 1190 1190 98.2400 1782 2461 1 chr6B.!!$F2 679
7 TraesCS1B01G310400 chr5B 583239801 583240467 666 True 1205 1205 99.2500 1795 2461 1 chr5B.!!$R2 666
8 TraesCS1B01G310400 chr5B 31246638 31247305 667 True 1201 1201 99.1020 1794 2461 1 chr5B.!!$R1 667
9 TraesCS1B01G310400 chr7B 495312734 495313399 665 False 1203 1203 99.2490 1795 2460 1 chr7B.!!$F1 665
10 TraesCS1B01G310400 chr3B 780808288 780808955 667 True 1201 1201 99.1020 1794 2461 1 chr3B.!!$R1 667
11 TraesCS1B01G310400 chr4A 738979313 738979980 667 True 1195 1195 98.9520 1794 2461 1 chr4A.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.03438 TGAGAGACGTGGGGACTAGG 60.034 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1840 0.319728 ACTCTGTGCTGCATCTCGTT 59.68 50.0 5.27 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.458163 CGGAGCTGGAACGGGCTA 61.458 66.667 0.00 0.00 39.78 3.93
24 25 2.501610 GGAGCTGGAACGGGCTAG 59.498 66.667 0.00 0.00 39.78 3.42
25 26 2.501610 GAGCTGGAACGGGCTAGG 59.498 66.667 0.00 0.00 39.78 3.02
26 27 2.284699 AGCTGGAACGGGCTAGGT 60.285 61.111 0.00 0.00 38.14 3.08
27 28 2.125106 GCTGGAACGGGCTAGGTG 60.125 66.667 0.00 0.00 33.56 4.00
28 29 2.955881 GCTGGAACGGGCTAGGTGT 61.956 63.158 0.00 0.00 33.56 4.16
29 30 1.677552 CTGGAACGGGCTAGGTGTT 59.322 57.895 0.00 0.00 0.00 3.32
30 31 0.391263 CTGGAACGGGCTAGGTGTTC 60.391 60.000 0.00 0.00 40.90 3.18
31 32 0.834687 TGGAACGGGCTAGGTGTTCT 60.835 55.000 4.56 0.00 41.27 3.01
32 33 0.108281 GGAACGGGCTAGGTGTTCTC 60.108 60.000 4.56 0.00 41.27 2.87
33 34 0.108281 GAACGGGCTAGGTGTTCTCC 60.108 60.000 0.00 0.00 39.07 3.71
34 35 0.544595 AACGGGCTAGGTGTTCTCCT 60.545 55.000 0.00 0.00 41.20 3.69
35 36 0.971447 ACGGGCTAGGTGTTCTCCTC 60.971 60.000 0.00 0.00 38.86 3.71
36 37 1.677637 CGGGCTAGGTGTTCTCCTCC 61.678 65.000 0.00 0.00 38.86 4.30
37 38 1.677637 GGGCTAGGTGTTCTCCTCCG 61.678 65.000 0.00 0.00 38.86 4.63
38 39 1.142097 GCTAGGTGTTCTCCTCCGC 59.858 63.158 0.00 0.00 38.86 5.54
39 40 1.605058 GCTAGGTGTTCTCCTCCGCA 61.605 60.000 0.00 0.00 38.86 5.69
40 41 0.457851 CTAGGTGTTCTCCTCCGCAG 59.542 60.000 0.00 0.00 38.86 5.18
41 42 0.039180 TAGGTGTTCTCCTCCGCAGA 59.961 55.000 0.00 0.00 38.86 4.26
42 43 0.616111 AGGTGTTCTCCTCCGCAGAT 60.616 55.000 0.00 0.00 31.32 2.90
43 44 0.460987 GGTGTTCTCCTCCGCAGATG 60.461 60.000 0.00 0.00 0.00 2.90
44 45 1.086634 GTGTTCTCCTCCGCAGATGC 61.087 60.000 0.00 0.00 37.78 3.91
54 55 2.401195 GCAGATGCGCGTCTTTCC 59.599 61.111 29.13 16.26 0.00 3.13
55 56 2.697425 CAGATGCGCGTCTTTCCG 59.303 61.111 29.13 14.43 0.00 4.30
63 64 2.488355 CGTCTTTCCGCTCCGCTA 59.512 61.111 0.00 0.00 0.00 4.26
64 65 1.872679 CGTCTTTCCGCTCCGCTAC 60.873 63.158 0.00 0.00 0.00 3.58
65 66 1.214589 GTCTTTCCGCTCCGCTACA 59.785 57.895 0.00 0.00 0.00 2.74
66 67 1.077089 GTCTTTCCGCTCCGCTACAC 61.077 60.000 0.00 0.00 0.00 2.90
67 68 2.126228 TTTCCGCTCCGCTACACG 60.126 61.111 0.00 0.00 43.15 4.49
78 79 4.760047 CTACACGGCCGCCTGCTT 62.760 66.667 28.58 0.00 40.92 3.91
83 84 4.705519 CGGCCGCCTGCTTGTTTG 62.706 66.667 14.67 0.00 40.92 2.93
84 85 3.294493 GGCCGCCTGCTTGTTTGA 61.294 61.111 0.71 0.00 40.92 2.69
85 86 2.727544 GCCGCCTGCTTGTTTGAA 59.272 55.556 0.00 0.00 36.87 2.69
86 87 1.372128 GCCGCCTGCTTGTTTGAAG 60.372 57.895 0.00 0.00 36.87 3.02
87 88 1.372128 CCGCCTGCTTGTTTGAAGC 60.372 57.895 0.00 0.00 43.29 3.86
95 96 1.528161 GCTTGTTTGAAGCATTGTGGC 59.472 47.619 0.00 0.00 42.56 5.01
96 97 2.823984 CTTGTTTGAAGCATTGTGGCA 58.176 42.857 0.00 0.00 35.83 4.92
97 98 3.395639 CTTGTTTGAAGCATTGTGGCAT 58.604 40.909 0.00 0.00 35.83 4.40
98 99 3.029320 TGTTTGAAGCATTGTGGCATC 57.971 42.857 0.00 0.00 35.83 3.91
99 100 1.987770 GTTTGAAGCATTGTGGCATCG 59.012 47.619 0.00 0.00 34.40 3.84
100 101 0.109179 TTGAAGCATTGTGGCATCGC 60.109 50.000 0.00 0.00 34.40 4.58
110 111 3.884900 GGCATCGCCGTTGTAACT 58.115 55.556 0.00 0.00 39.62 2.24
111 112 1.713830 GGCATCGCCGTTGTAACTC 59.286 57.895 0.00 0.00 39.62 3.01
112 113 1.702491 GGCATCGCCGTTGTAACTCC 61.702 60.000 0.00 0.00 39.62 3.85
113 114 1.995991 CATCGCCGTTGTAACTCCG 59.004 57.895 0.00 0.00 0.00 4.63
114 115 1.808390 ATCGCCGTTGTAACTCCGC 60.808 57.895 0.00 0.00 0.00 5.54
115 116 3.834373 CGCCGTTGTAACTCCGCG 61.834 66.667 0.00 0.00 32.98 6.46
116 117 3.484547 GCCGTTGTAACTCCGCGG 61.485 66.667 22.12 22.12 44.60 6.46
117 118 3.484547 CCGTTGTAACTCCGCGGC 61.485 66.667 23.51 6.50 35.90 6.53
118 119 3.484547 CGTTGTAACTCCGCGGCC 61.485 66.667 23.51 5.94 0.00 6.13
119 120 2.047560 GTTGTAACTCCGCGGCCT 60.048 61.111 23.51 9.66 0.00 5.19
120 121 2.047655 TTGTAACTCCGCGGCCTG 60.048 61.111 23.51 15.56 0.00 4.85
121 122 2.874664 TTGTAACTCCGCGGCCTGT 61.875 57.895 23.51 16.28 0.00 4.00
122 123 2.047560 GTAACTCCGCGGCCTGTT 60.048 61.111 23.51 24.80 0.00 3.16
123 124 2.047655 TAACTCCGCGGCCTGTTG 60.048 61.111 28.24 15.17 0.00 3.33
124 125 3.599285 TAACTCCGCGGCCTGTTGG 62.599 63.158 28.24 13.77 0.00 3.77
130 131 4.347453 GCGGCCTGTTGGTTGCAG 62.347 66.667 0.00 0.00 36.22 4.41
131 132 4.347453 CGGCCTGTTGGTTGCAGC 62.347 66.667 0.00 0.00 35.27 5.25
132 133 3.225798 GGCCTGTTGGTTGCAGCA 61.226 61.111 2.05 0.00 35.27 4.41
133 134 2.028043 GCCTGTTGGTTGCAGCAC 59.972 61.111 2.05 0.00 35.27 4.40
134 135 2.784356 GCCTGTTGGTTGCAGCACA 61.784 57.895 2.05 0.00 35.27 4.57
135 136 1.066257 CCTGTTGGTTGCAGCACAC 59.934 57.895 2.05 0.00 32.93 3.82
136 137 1.066257 CTGTTGGTTGCAGCACACC 59.934 57.895 15.93 15.93 0.00 4.16
137 138 2.026014 GTTGGTTGCAGCACACCG 59.974 61.111 17.02 0.00 0.00 4.94
138 139 3.898509 TTGGTTGCAGCACACCGC 61.899 61.111 17.02 0.00 42.91 5.68
165 166 4.175337 GGTGATGGCCGGCTAGCA 62.175 66.667 27.86 27.86 0.00 3.49
166 167 2.590007 GTGATGGCCGGCTAGCAG 60.590 66.667 31.99 13.09 0.00 4.24
167 168 4.552365 TGATGGCCGGCTAGCAGC 62.552 66.667 27.86 19.16 41.46 5.25
168 169 4.552365 GATGGCCGGCTAGCAGCA 62.552 66.667 28.56 15.32 44.75 4.41
169 170 4.559063 ATGGCCGGCTAGCAGCAG 62.559 66.667 28.56 8.67 44.75 4.24
189 190 4.161295 CGGCTCATCGGGGCTTCA 62.161 66.667 0.00 0.00 0.00 3.02
190 191 2.272146 GGCTCATCGGGGCTTCAA 59.728 61.111 0.00 0.00 0.00 2.69
191 192 1.821332 GGCTCATCGGGGCTTCAAG 60.821 63.158 0.00 0.00 0.00 3.02
192 193 2.476320 GCTCATCGGGGCTTCAAGC 61.476 63.158 0.00 0.00 41.46 4.01
193 194 2.125147 TCATCGGGGCTTCAAGCG 60.125 61.111 2.54 0.00 43.62 4.68
194 195 3.204827 CATCGGGGCTTCAAGCGG 61.205 66.667 2.54 0.00 43.62 5.52
215 216 4.135153 GCGGCGGCTCAGAAGAGA 62.135 66.667 9.78 0.00 44.98 3.10
216 217 2.103934 CGGCGGCTCAGAAGAGAG 59.896 66.667 7.61 0.00 44.98 3.20
217 218 2.410687 CGGCGGCTCAGAAGAGAGA 61.411 63.158 7.61 0.00 44.98 3.10
218 219 1.437160 GGCGGCTCAGAAGAGAGAG 59.563 63.158 0.00 0.00 44.98 3.20
219 220 1.034838 GGCGGCTCAGAAGAGAGAGA 61.035 60.000 0.00 0.00 44.98 3.10
220 221 1.032014 GCGGCTCAGAAGAGAGAGAT 58.968 55.000 0.00 0.00 44.98 2.75
221 222 1.408702 GCGGCTCAGAAGAGAGAGATT 59.591 52.381 0.00 0.00 44.98 2.40
222 223 2.799207 GCGGCTCAGAAGAGAGAGATTG 60.799 54.545 0.00 0.00 44.98 2.67
223 224 2.223782 CGGCTCAGAAGAGAGAGATTGG 60.224 54.545 0.00 0.00 44.98 3.16
224 225 3.030291 GGCTCAGAAGAGAGAGATTGGA 58.970 50.000 0.00 0.00 44.98 3.53
225 226 3.450457 GGCTCAGAAGAGAGAGATTGGAA 59.550 47.826 0.00 0.00 44.98 3.53
226 227 4.081198 GGCTCAGAAGAGAGAGATTGGAAA 60.081 45.833 0.00 0.00 44.98 3.13
227 228 5.486526 GCTCAGAAGAGAGAGATTGGAAAA 58.513 41.667 0.00 0.00 44.98 2.29
228 229 5.581874 GCTCAGAAGAGAGAGATTGGAAAAG 59.418 44.000 0.00 0.00 44.98 2.27
229 230 5.486526 TCAGAAGAGAGAGATTGGAAAAGC 58.513 41.667 0.00 0.00 0.00 3.51
230 231 5.012458 TCAGAAGAGAGAGATTGGAAAAGCA 59.988 40.000 0.00 0.00 0.00 3.91
231 232 5.352016 CAGAAGAGAGAGATTGGAAAAGCAG 59.648 44.000 0.00 0.00 0.00 4.24
232 233 5.248020 AGAAGAGAGAGATTGGAAAAGCAGA 59.752 40.000 0.00 0.00 0.00 4.26
233 234 5.088680 AGAGAGAGATTGGAAAAGCAGAG 57.911 43.478 0.00 0.00 0.00 3.35
234 235 4.776837 AGAGAGAGATTGGAAAAGCAGAGA 59.223 41.667 0.00 0.00 0.00 3.10
235 236 5.426185 AGAGAGAGATTGGAAAAGCAGAGAT 59.574 40.000 0.00 0.00 0.00 2.75
236 237 6.064735 AGAGAGATTGGAAAAGCAGAGATT 57.935 37.500 0.00 0.00 0.00 2.40
237 238 7.125507 AGAGAGAGATTGGAAAAGCAGAGATTA 59.874 37.037 0.00 0.00 0.00 1.75
238 239 7.274447 AGAGAGATTGGAAAAGCAGAGATTAG 58.726 38.462 0.00 0.00 0.00 1.73
239 240 6.956497 AGAGATTGGAAAAGCAGAGATTAGT 58.044 36.000 0.00 0.00 0.00 2.24
240 241 8.083828 AGAGATTGGAAAAGCAGAGATTAGTA 57.916 34.615 0.00 0.00 0.00 1.82
241 242 8.713036 AGAGATTGGAAAAGCAGAGATTAGTAT 58.287 33.333 0.00 0.00 0.00 2.12
242 243 8.900983 AGATTGGAAAAGCAGAGATTAGTATC 57.099 34.615 0.00 0.00 0.00 2.24
243 244 8.713036 AGATTGGAAAAGCAGAGATTAGTATCT 58.287 33.333 0.00 0.00 43.85 1.98
244 245 8.674263 ATTGGAAAAGCAGAGATTAGTATCTG 57.326 34.615 5.56 5.56 44.58 2.90
245 246 7.187824 TGGAAAAGCAGAGATTAGTATCTGT 57.812 36.000 11.02 0.00 43.84 3.41
253 254 7.800155 CAGAGATTAGTATCTGTGTGAGAGA 57.200 40.000 1.92 0.00 43.60 3.10
254 255 7.639039 CAGAGATTAGTATCTGTGTGAGAGAC 58.361 42.308 1.92 0.00 43.60 3.36
255 256 6.481976 AGAGATTAGTATCTGTGTGAGAGACG 59.518 42.308 0.00 0.00 45.99 4.18
256 257 6.116806 AGATTAGTATCTGTGTGAGAGACGT 58.883 40.000 0.00 0.00 45.99 4.34
257 258 5.547181 TTAGTATCTGTGTGAGAGACGTG 57.453 43.478 0.00 0.00 45.99 4.49
258 259 2.750166 AGTATCTGTGTGAGAGACGTGG 59.250 50.000 0.00 0.00 45.99 4.94
259 260 0.891373 ATCTGTGTGAGAGACGTGGG 59.109 55.000 0.00 0.00 32.80 4.61
260 261 1.179174 TCTGTGTGAGAGACGTGGGG 61.179 60.000 0.00 0.00 0.00 4.96
261 262 1.152631 TGTGTGAGAGACGTGGGGA 60.153 57.895 0.00 0.00 0.00 4.81
262 263 1.289380 GTGTGAGAGACGTGGGGAC 59.711 63.158 0.00 0.00 0.00 4.46
263 264 1.153061 TGTGAGAGACGTGGGGACT 59.847 57.895 0.00 0.00 0.00 3.85
264 265 0.402887 TGTGAGAGACGTGGGGACTA 59.597 55.000 0.00 0.00 0.00 2.59
265 266 1.096416 GTGAGAGACGTGGGGACTAG 58.904 60.000 0.00 0.00 0.00 2.57
266 267 0.034380 TGAGAGACGTGGGGACTAGG 60.034 60.000 0.00 0.00 0.00 3.02
267 268 0.752376 GAGAGACGTGGGGACTAGGG 60.752 65.000 0.00 0.00 0.00 3.53
268 269 1.212934 AGAGACGTGGGGACTAGGGA 61.213 60.000 0.00 0.00 0.00 4.20
269 270 0.752376 GAGACGTGGGGACTAGGGAG 60.752 65.000 0.00 0.00 0.00 4.30
270 271 1.212934 AGACGTGGGGACTAGGGAGA 61.213 60.000 0.00 0.00 0.00 3.71
271 272 0.106116 GACGTGGGGACTAGGGAGAT 60.106 60.000 0.00 0.00 0.00 2.75
272 273 1.144503 GACGTGGGGACTAGGGAGATA 59.855 57.143 0.00 0.00 0.00 1.98
273 274 1.572415 ACGTGGGGACTAGGGAGATAA 59.428 52.381 0.00 0.00 0.00 1.75
274 275 2.240279 CGTGGGGACTAGGGAGATAAG 58.760 57.143 0.00 0.00 0.00 1.73
275 276 2.610873 GTGGGGACTAGGGAGATAAGG 58.389 57.143 0.00 0.00 0.00 2.69
276 277 2.179424 GTGGGGACTAGGGAGATAAGGA 59.821 54.545 0.00 0.00 0.00 3.36
277 278 2.869689 TGGGGACTAGGGAGATAAGGAA 59.130 50.000 0.00 0.00 0.00 3.36
278 279 3.276578 TGGGGACTAGGGAGATAAGGAAA 59.723 47.826 0.00 0.00 0.00 3.13
279 280 3.647113 GGGGACTAGGGAGATAAGGAAAC 59.353 52.174 0.00 0.00 0.00 2.78
280 281 4.296056 GGGACTAGGGAGATAAGGAAACA 58.704 47.826 0.00 0.00 0.00 2.83
281 282 4.908481 GGGACTAGGGAGATAAGGAAACAT 59.092 45.833 0.00 0.00 0.00 2.71
282 283 5.221742 GGGACTAGGGAGATAAGGAAACATG 60.222 48.000 0.00 0.00 0.00 3.21
283 284 5.367060 GGACTAGGGAGATAAGGAAACATGT 59.633 44.000 0.00 0.00 0.00 3.21
284 285 6.240549 ACTAGGGAGATAAGGAAACATGTG 57.759 41.667 0.00 0.00 0.00 3.21
285 286 4.510167 AGGGAGATAAGGAAACATGTGG 57.490 45.455 0.00 0.00 0.00 4.17
286 287 2.952310 GGGAGATAAGGAAACATGTGGC 59.048 50.000 0.00 0.00 0.00 5.01
287 288 3.372025 GGGAGATAAGGAAACATGTGGCT 60.372 47.826 0.00 0.00 0.00 4.75
288 289 3.629398 GGAGATAAGGAAACATGTGGCTG 59.371 47.826 0.00 0.00 0.00 4.85
289 290 4.517285 GAGATAAGGAAACATGTGGCTGA 58.483 43.478 0.00 0.00 0.00 4.26
290 291 4.521146 AGATAAGGAAACATGTGGCTGAG 58.479 43.478 0.00 0.00 0.00 3.35
291 292 2.957402 AAGGAAACATGTGGCTGAGA 57.043 45.000 0.00 0.00 0.00 3.27
292 293 2.486472 AGGAAACATGTGGCTGAGAG 57.514 50.000 0.00 0.00 0.00 3.20
293 294 1.004044 AGGAAACATGTGGCTGAGAGG 59.996 52.381 0.00 0.00 0.00 3.69
294 295 0.807496 GAAACATGTGGCTGAGAGGC 59.193 55.000 0.00 0.00 41.77 4.70
295 296 0.403271 AAACATGTGGCTGAGAGGCT 59.597 50.000 0.00 0.00 41.96 4.58
296 297 0.403271 AACATGTGGCTGAGAGGCTT 59.597 50.000 0.00 0.00 41.96 4.35
297 298 0.035630 ACATGTGGCTGAGAGGCTTC 60.036 55.000 0.00 0.00 41.96 3.86
298 299 1.088340 CATGTGGCTGAGAGGCTTCG 61.088 60.000 0.00 0.00 41.96 3.79
299 300 2.817396 GTGGCTGAGAGGCTTCGC 60.817 66.667 0.00 0.00 41.96 4.70
300 301 4.441695 TGGCTGAGAGGCTTCGCG 62.442 66.667 0.00 0.00 41.96 5.87
301 302 4.135153 GGCTGAGAGGCTTCGCGA 62.135 66.667 3.71 3.71 37.85 5.87
302 303 2.581953 GCTGAGAGGCTTCGCGAG 60.582 66.667 9.59 4.97 0.00 5.03
303 304 3.057547 GCTGAGAGGCTTCGCGAGA 62.058 63.158 9.59 0.00 39.20 4.04
304 305 1.063972 CTGAGAGGCTTCGCGAGAG 59.936 63.158 9.59 11.22 43.69 3.20
305 306 1.372838 CTGAGAGGCTTCGCGAGAGA 61.373 60.000 9.59 0.00 43.69 3.10
306 307 0.960861 TGAGAGGCTTCGCGAGAGAA 60.961 55.000 9.59 0.00 43.69 2.87
307 308 0.171455 GAGAGGCTTCGCGAGAGAAA 59.829 55.000 9.59 0.00 43.69 2.52
308 309 0.172352 AGAGGCTTCGCGAGAGAAAG 59.828 55.000 9.59 4.39 43.69 2.62
309 310 0.171455 GAGGCTTCGCGAGAGAAAGA 59.829 55.000 9.59 0.00 43.69 2.52
310 311 0.603569 AGGCTTCGCGAGAGAAAGAA 59.396 50.000 9.59 0.00 43.69 2.52
311 312 0.716666 GGCTTCGCGAGAGAAAGAAC 59.283 55.000 9.59 0.00 43.69 3.01
312 313 0.363846 GCTTCGCGAGAGAAAGAACG 59.636 55.000 9.59 0.00 43.69 3.95
313 314 1.965083 CTTCGCGAGAGAAAGAACGA 58.035 50.000 9.59 0.00 43.69 3.85
314 315 1.908247 CTTCGCGAGAGAAAGAACGAG 59.092 52.381 9.59 0.00 43.69 4.18
315 316 1.154197 TCGCGAGAGAAAGAACGAGA 58.846 50.000 3.71 0.00 34.84 4.04
316 317 1.738350 TCGCGAGAGAAAGAACGAGAT 59.262 47.619 3.71 0.00 34.84 2.75
317 318 2.934553 TCGCGAGAGAAAGAACGAGATA 59.065 45.455 3.71 0.00 34.84 1.98
318 319 3.373130 TCGCGAGAGAAAGAACGAGATAA 59.627 43.478 3.71 0.00 34.84 1.75
319 320 3.721798 CGCGAGAGAAAGAACGAGATAAG 59.278 47.826 0.00 0.00 0.00 1.73
320 321 4.039032 GCGAGAGAAAGAACGAGATAAGG 58.961 47.826 0.00 0.00 0.00 2.69
321 322 4.602995 CGAGAGAAAGAACGAGATAAGGG 58.397 47.826 0.00 0.00 0.00 3.95
322 323 4.335874 CGAGAGAAAGAACGAGATAAGGGA 59.664 45.833 0.00 0.00 0.00 4.20
323 324 5.584442 GAGAGAAAGAACGAGATAAGGGAC 58.416 45.833 0.00 0.00 0.00 4.46
324 325 4.096682 AGAGAAAGAACGAGATAAGGGACG 59.903 45.833 0.00 0.00 0.00 4.79
325 326 2.580966 AAGAACGAGATAAGGGACGC 57.419 50.000 0.00 0.00 0.00 5.19
326 327 0.381089 AGAACGAGATAAGGGACGCG 59.619 55.000 3.53 3.53 35.67 6.01
327 328 0.100146 GAACGAGATAAGGGACGCGT 59.900 55.000 13.85 13.85 43.24 6.01
328 329 0.179145 AACGAGATAAGGGACGCGTG 60.179 55.000 20.70 0.00 40.97 5.34
329 330 1.299165 CGAGATAAGGGACGCGTGG 60.299 63.158 20.70 0.00 0.00 4.94
330 331 1.067582 GAGATAAGGGACGCGTGGG 59.932 63.158 20.70 0.00 0.00 4.61
331 332 2.588034 GATAAGGGACGCGTGGGC 60.588 66.667 20.70 0.86 0.00 5.36
332 333 3.081409 ATAAGGGACGCGTGGGCT 61.081 61.111 20.70 0.21 36.88 5.19
333 334 3.385749 ATAAGGGACGCGTGGGCTG 62.386 63.158 20.70 0.00 36.88 4.85
336 337 4.778143 GGGACGCGTGGGCTGATT 62.778 66.667 20.70 0.00 36.88 2.57
337 338 2.185867 GGACGCGTGGGCTGATTA 59.814 61.111 20.70 0.00 36.88 1.75
338 339 1.227556 GGACGCGTGGGCTGATTAT 60.228 57.895 20.70 0.00 36.88 1.28
339 340 1.498865 GGACGCGTGGGCTGATTATG 61.499 60.000 20.70 0.00 36.88 1.90
340 341 0.810031 GACGCGTGGGCTGATTATGT 60.810 55.000 20.70 0.00 36.88 2.29
341 342 1.089481 ACGCGTGGGCTGATTATGTG 61.089 55.000 12.93 0.00 36.88 3.21
342 343 1.775039 CGCGTGGGCTGATTATGTGG 61.775 60.000 0.00 0.00 36.88 4.17
343 344 0.748005 GCGTGGGCTGATTATGTGGT 60.748 55.000 0.00 0.00 35.83 4.16
344 345 1.016627 CGTGGGCTGATTATGTGGTG 58.983 55.000 0.00 0.00 0.00 4.17
345 346 1.392589 GTGGGCTGATTATGTGGTGG 58.607 55.000 0.00 0.00 0.00 4.61
346 347 0.395586 TGGGCTGATTATGTGGTGGC 60.396 55.000 0.00 0.00 0.00 5.01
347 348 0.106519 GGGCTGATTATGTGGTGGCT 60.107 55.000 0.00 0.00 0.00 4.75
348 349 1.142870 GGGCTGATTATGTGGTGGCTA 59.857 52.381 0.00 0.00 0.00 3.93
349 350 2.498167 GGCTGATTATGTGGTGGCTAG 58.502 52.381 0.00 0.00 0.00 3.42
350 351 1.876156 GCTGATTATGTGGTGGCTAGC 59.124 52.381 6.04 6.04 0.00 3.42
351 352 2.138320 CTGATTATGTGGTGGCTAGCG 58.862 52.381 9.00 0.00 0.00 4.26
352 353 1.760029 TGATTATGTGGTGGCTAGCGA 59.240 47.619 9.00 0.68 0.00 4.93
353 354 2.224042 TGATTATGTGGTGGCTAGCGAG 60.224 50.000 9.00 0.00 0.00 5.03
363 364 3.966104 CTAGCGAGCGATGCGGGA 61.966 66.667 0.00 0.00 37.44 5.14
364 365 4.266070 TAGCGAGCGATGCGGGAC 62.266 66.667 0.00 0.00 37.44 4.46
367 368 4.933064 CGAGCGATGCGGGACCTC 62.933 72.222 0.00 0.00 0.00 3.85
368 369 4.933064 GAGCGATGCGGGACCTCG 62.933 72.222 0.00 0.00 35.57 4.63
371 372 4.129737 CGATGCGGGACCTCGTGT 62.130 66.667 4.61 0.00 0.00 4.49
372 373 2.509336 GATGCGGGACCTCGTGTG 60.509 66.667 4.61 0.00 0.00 3.82
373 374 3.296709 GATGCGGGACCTCGTGTGT 62.297 63.158 4.61 0.00 0.00 3.72
374 375 2.781595 GATGCGGGACCTCGTGTGTT 62.782 60.000 4.61 0.00 0.00 3.32
375 376 3.041940 GCGGGACCTCGTGTGTTG 61.042 66.667 4.61 0.00 0.00 3.33
376 377 2.420043 CGGGACCTCGTGTGTTGT 59.580 61.111 0.00 0.00 0.00 3.32
377 378 1.227438 CGGGACCTCGTGTGTTGTT 60.227 57.895 0.00 0.00 0.00 2.83
378 379 0.812412 CGGGACCTCGTGTGTTGTTT 60.812 55.000 0.00 0.00 0.00 2.83
379 380 0.661020 GGGACCTCGTGTGTTGTTTG 59.339 55.000 0.00 0.00 0.00 2.93
380 381 1.658994 GGACCTCGTGTGTTGTTTGA 58.341 50.000 0.00 0.00 0.00 2.69
381 382 2.218603 GGACCTCGTGTGTTGTTTGAT 58.781 47.619 0.00 0.00 0.00 2.57
382 383 2.223377 GGACCTCGTGTGTTGTTTGATC 59.777 50.000 0.00 0.00 0.00 2.92
383 384 1.864711 ACCTCGTGTGTTGTTTGATCG 59.135 47.619 0.00 0.00 0.00 3.69
384 385 1.194547 CCTCGTGTGTTGTTTGATCGG 59.805 52.381 0.00 0.00 0.00 4.18
385 386 2.131972 CTCGTGTGTTGTTTGATCGGA 58.868 47.619 0.00 0.00 0.00 4.55
386 387 1.862201 TCGTGTGTTGTTTGATCGGAC 59.138 47.619 0.00 0.00 0.00 4.79
387 388 1.396690 CGTGTGTTGTTTGATCGGACG 60.397 52.381 0.00 0.00 0.00 4.79
388 389 1.070175 GTGTGTTGTTTGATCGGACGG 60.070 52.381 0.00 0.00 0.00 4.79
389 390 0.110373 GTGTTGTTTGATCGGACGGC 60.110 55.000 0.00 0.00 0.00 5.68
390 391 1.231958 TGTTGTTTGATCGGACGGCC 61.232 55.000 0.00 0.00 0.00 6.13
391 392 1.673009 TTGTTTGATCGGACGGCCC 60.673 57.895 0.00 0.00 0.00 5.80
392 393 2.046700 GTTTGATCGGACGGCCCA 60.047 61.111 0.00 0.00 34.14 5.36
393 394 2.106683 GTTTGATCGGACGGCCCAG 61.107 63.158 0.00 0.00 34.14 4.45
394 395 3.969250 TTTGATCGGACGGCCCAGC 62.969 63.158 0.00 0.00 34.14 4.85
396 397 4.899239 GATCGGACGGCCCAGCAG 62.899 72.222 0.00 0.00 34.14 4.24
403 404 4.451150 CGGCCCAGCAGCGAGTAA 62.451 66.667 0.00 0.00 0.00 2.24
404 405 2.820037 GGCCCAGCAGCGAGTAAC 60.820 66.667 0.00 0.00 0.00 2.50
405 406 3.188786 GCCCAGCAGCGAGTAACG 61.189 66.667 0.00 0.00 45.66 3.18
416 417 2.398903 CGAGTAACGCGTTGTTGATC 57.601 50.000 33.40 20.42 42.01 2.92
417 418 1.265732 CGAGTAACGCGTTGTTGATCG 60.266 52.381 33.40 26.45 42.01 3.69
418 419 1.058695 GAGTAACGCGTTGTTGATCGG 59.941 52.381 33.40 0.00 42.01 4.18
419 420 1.062258 GTAACGCGTTGTTGATCGGA 58.938 50.000 33.40 8.05 42.01 4.55
420 421 1.657094 GTAACGCGTTGTTGATCGGAT 59.343 47.619 33.40 5.77 42.01 4.18
421 422 0.442310 AACGCGTTGTTGATCGGATG 59.558 50.000 26.00 0.00 40.00 3.51
422 423 1.348250 CGCGTTGTTGATCGGATGG 59.652 57.895 0.00 0.00 0.00 3.51
423 424 1.062525 GCGTTGTTGATCGGATGGC 59.937 57.895 0.00 0.00 0.00 4.40
424 425 1.721487 CGTTGTTGATCGGATGGCC 59.279 57.895 0.00 0.00 0.00 5.36
425 426 1.714899 CGTTGTTGATCGGATGGCCC 61.715 60.000 0.00 0.00 0.00 5.80
469 470 2.741211 GGCGGACCGGTCAGAAAC 60.741 66.667 34.77 20.65 0.00 2.78
470 471 3.110178 GCGGACCGGTCAGAAACG 61.110 66.667 34.77 27.58 0.00 3.60
471 472 2.337532 CGGACCGGTCAGAAACGT 59.662 61.111 34.40 0.00 0.00 3.99
472 473 1.300388 CGGACCGGTCAGAAACGTT 60.300 57.895 34.40 0.00 0.00 3.99
473 474 0.877213 CGGACCGGTCAGAAACGTTT 60.877 55.000 34.40 14.57 0.00 3.60
474 475 0.863799 GGACCGGTCAGAAACGTTTC 59.136 55.000 34.40 29.36 37.45 2.78
475 476 0.863799 GACCGGTCAGAAACGTTTCC 59.136 55.000 31.87 19.32 37.92 3.13
476 477 0.533531 ACCGGTCAGAAACGTTTCCC 60.534 55.000 31.87 25.02 37.92 3.97
477 478 0.250166 CCGGTCAGAAACGTTTCCCT 60.250 55.000 31.87 15.97 37.92 4.20
478 479 1.589803 CGGTCAGAAACGTTTCCCTT 58.410 50.000 31.87 15.28 37.92 3.95
483 484 3.626217 GTCAGAAACGTTTCCCTTCTGTT 59.374 43.478 31.87 12.52 44.18 3.16
484 485 4.812626 GTCAGAAACGTTTCCCTTCTGTTA 59.187 41.667 31.87 10.08 44.18 2.41
489 490 4.004196 ACGTTTCCCTTCTGTTAAGGAG 57.996 45.455 5.35 0.00 39.81 3.69
492 493 4.691216 CGTTTCCCTTCTGTTAAGGAGAAG 59.309 45.833 13.83 13.83 44.16 2.85
518 519 1.066502 TCTGGCAGCAACTAACGCATA 60.067 47.619 10.34 0.00 0.00 3.14
519 520 1.737236 CTGGCAGCAACTAACGCATAA 59.263 47.619 0.00 0.00 0.00 1.90
528 529 3.470645 ACTAACGCATAATCCAGGTCC 57.529 47.619 0.00 0.00 0.00 4.46
533 534 1.971357 CGCATAATCCAGGTCCCTAGT 59.029 52.381 0.00 0.00 0.00 2.57
635 645 3.308878 GAGCGTTCGCGGCATTGTT 62.309 57.895 6.13 0.00 41.67 2.83
649 659 2.030805 GCATTGTTGCCTTCTCGTCTTT 60.031 45.455 0.00 0.00 43.38 2.52
652 662 2.413837 TGTTGCCTTCTCGTCTTTAGC 58.586 47.619 0.00 0.00 0.00 3.09
656 666 2.164624 TGCCTTCTCGTCTTTAGCTCTC 59.835 50.000 0.00 0.00 0.00 3.20
666 676 3.108376 TCTTTAGCTCTCCCCCTTCTTC 58.892 50.000 0.00 0.00 0.00 2.87
683 693 0.685097 TTCCACGGGACCTTCAGAAG 59.315 55.000 2.78 2.78 0.00 2.85
739 749 4.794241 GCATGGCGCGTGTCGAAC 62.794 66.667 8.43 0.00 41.67 3.95
837 851 0.181350 CCCACCTCTAGGCCATTGTC 59.819 60.000 5.01 0.00 39.32 3.18
896 910 2.036475 CCACATATACTTGCGCTCTCCT 59.964 50.000 9.73 0.00 0.00 3.69
905 919 4.020617 CGCTCTCCTTGCCCACCA 62.021 66.667 0.00 0.00 0.00 4.17
918 932 2.822637 CCACCAGAGCCACACCTGT 61.823 63.158 0.00 0.00 0.00 4.00
941 955 0.986019 AGACCACAGTTCACCCACCA 60.986 55.000 0.00 0.00 0.00 4.17
943 957 0.333312 ACCACAGTTCACCCACCAAA 59.667 50.000 0.00 0.00 0.00 3.28
967 984 6.191315 ACACCTGAAGATCACATACTACTCT 58.809 40.000 0.00 0.00 0.00 3.24
968 985 7.347252 ACACCTGAAGATCACATACTACTCTA 58.653 38.462 0.00 0.00 0.00 2.43
969 986 7.283580 ACACCTGAAGATCACATACTACTCTAC 59.716 40.741 0.00 0.00 0.00 2.59
970 987 7.500892 CACCTGAAGATCACATACTACTCTACT 59.499 40.741 0.00 0.00 0.00 2.57
971 988 8.056400 ACCTGAAGATCACATACTACTCTACTT 58.944 37.037 0.00 0.00 0.00 2.24
984 1001 6.166982 ACTACTCTACTTGTCAATCTTTGCC 58.833 40.000 0.00 0.00 0.00 4.52
1388 1414 0.651551 GCGTACGTGACACCAAAACA 59.348 50.000 17.90 0.00 0.00 2.83
1389 1415 1.062294 GCGTACGTGACACCAAAACAA 59.938 47.619 17.90 0.00 0.00 2.83
1390 1416 2.475852 GCGTACGTGACACCAAAACAAA 60.476 45.455 17.90 0.00 0.00 2.83
1397 1423 4.688021 GTGACACCAAAACAAAAGGCATA 58.312 39.130 0.00 0.00 0.00 3.14
1404 1430 7.148323 ACACCAAAACAAAAGGCATAAAAGTTC 60.148 33.333 0.00 0.00 0.00 3.01
1447 1476 1.276415 CGGCTGTTTTTGTGTTGTGG 58.724 50.000 0.00 0.00 0.00 4.17
1519 1552 2.032549 GTGATGCGATGCCACAAGATAC 60.033 50.000 0.00 0.00 0.00 2.24
1521 1554 1.939974 TGCGATGCCACAAGATACTC 58.060 50.000 0.00 0.00 0.00 2.59
1527 1560 4.503123 CGATGCCACAAGATACTCCCATTA 60.503 45.833 0.00 0.00 0.00 1.90
1530 1563 4.411869 TGCCACAAGATACTCCCATTATGA 59.588 41.667 0.00 0.00 0.00 2.15
1533 1566 6.491403 GCCACAAGATACTCCCATTATGAAAT 59.509 38.462 0.00 0.00 0.00 2.17
1539 1572 8.915057 AGATACTCCCATTATGAAATGTTCTG 57.085 34.615 0.00 0.00 40.84 3.02
1604 1699 1.460743 CGAATGATCGCGCCATATGTT 59.539 47.619 12.85 0.62 42.96 2.71
1607 1702 1.501169 TGATCGCGCCATATGTTCTG 58.499 50.000 0.00 0.00 0.00 3.02
1608 1703 1.068434 TGATCGCGCCATATGTTCTGA 59.932 47.619 0.00 0.00 0.00 3.27
1609 1704 2.135139 GATCGCGCCATATGTTCTGAA 58.865 47.619 0.00 0.00 0.00 3.02
1610 1705 1.286501 TCGCGCCATATGTTCTGAAC 58.713 50.000 13.49 13.49 0.00 3.18
1624 1719 6.867519 TGTTCTGAACTCTCCCATTATGTA 57.132 37.500 20.18 0.00 0.00 2.29
1663 1758 2.427453 GTGTGATGAGGGAGACATACGT 59.573 50.000 0.00 0.00 0.00 3.57
1698 1794 8.611757 CATGAATAATCGTTGGATTTGTGACTA 58.388 33.333 0.00 0.00 42.71 2.59
1720 1816 8.809159 ACTATGATCAACAGATTATCTCAACG 57.191 34.615 13.14 0.00 0.00 4.10
1724 1820 4.183865 TCAACAGATTATCTCAACGGCAG 58.816 43.478 0.00 0.00 0.00 4.85
1744 1840 7.227116 ACGGCAGTTTTACTTCTACATTGTTTA 59.773 33.333 0.00 0.00 0.00 2.01
1761 1857 2.736721 GTTTAACGAGATGCAGCACAGA 59.263 45.455 4.07 0.00 0.00 3.41
1787 1883 6.818644 GTCACTGTGTAGGATAACAATCATGT 59.181 38.462 7.79 0.00 43.14 3.21
2204 2300 5.108187 ACATGATATGAAGTGTTGGAGCT 57.892 39.130 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.359967 ACCTAGCCCGTTCCAGCTC 61.360 63.158 0.00 0.00 40.56 4.09
9 10 2.284699 ACCTAGCCCGTTCCAGCT 60.285 61.111 0.00 0.00 43.20 4.24
11 12 0.391263 GAACACCTAGCCCGTTCCAG 60.391 60.000 6.08 0.00 34.31 3.86
12 13 0.834687 AGAACACCTAGCCCGTTCCA 60.835 55.000 11.39 0.00 39.89 3.53
13 14 0.108281 GAGAACACCTAGCCCGTTCC 60.108 60.000 11.39 3.37 39.89 3.62
14 15 0.108281 GGAGAACACCTAGCCCGTTC 60.108 60.000 8.37 8.37 39.44 3.95
15 16 0.544595 AGGAGAACACCTAGCCCGTT 60.545 55.000 0.00 0.00 38.65 4.44
16 17 0.971447 GAGGAGAACACCTAGCCCGT 60.971 60.000 0.00 0.00 40.73 5.28
17 18 1.677637 GGAGGAGAACACCTAGCCCG 61.678 65.000 0.00 0.00 40.73 6.13
18 19 1.677637 CGGAGGAGAACACCTAGCCC 61.678 65.000 0.00 0.00 40.73 5.19
19 20 1.817209 CGGAGGAGAACACCTAGCC 59.183 63.158 0.00 0.00 40.73 3.93
20 21 1.142097 GCGGAGGAGAACACCTAGC 59.858 63.158 0.00 0.00 40.73 3.42
21 22 2.579878 TGCGGAGGAGAACACCTAG 58.420 57.895 0.00 0.00 40.73 3.02
22 23 4.856789 TGCGGAGGAGAACACCTA 57.143 55.556 0.00 0.00 40.73 3.08
37 38 2.401195 GGAAAGACGCGCATCTGC 59.599 61.111 6.81 1.94 37.78 4.26
38 39 2.697425 CGGAAAGACGCGCATCTG 59.303 61.111 6.81 0.16 0.00 2.90
61 62 4.760047 AAGCAGGCGGCCGTGTAG 62.760 66.667 28.70 15.38 46.50 2.74
66 67 4.705519 CAAACAAGCAGGCGGCCG 62.706 66.667 24.05 24.05 46.50 6.13
67 68 2.753931 CTTCAAACAAGCAGGCGGCC 62.754 60.000 12.11 12.11 46.50 6.13
68 69 1.372128 CTTCAAACAAGCAGGCGGC 60.372 57.895 0.00 0.00 45.30 6.53
69 70 1.372128 GCTTCAAACAAGCAGGCGG 60.372 57.895 1.40 0.00 42.56 6.13
70 71 4.233408 GCTTCAAACAAGCAGGCG 57.767 55.556 1.40 0.00 42.56 5.52
75 76 1.528161 GCCACAATGCTTCAAACAAGC 59.472 47.619 0.00 0.00 43.29 4.01
76 77 2.823984 TGCCACAATGCTTCAAACAAG 58.176 42.857 0.00 0.00 0.00 3.16
77 78 2.975732 TGCCACAATGCTTCAAACAA 57.024 40.000 0.00 0.00 0.00 2.83
78 79 2.607526 CGATGCCACAATGCTTCAAACA 60.608 45.455 0.00 0.00 35.71 2.83
79 80 1.987770 CGATGCCACAATGCTTCAAAC 59.012 47.619 0.00 0.00 35.71 2.93
80 81 1.669502 GCGATGCCACAATGCTTCAAA 60.670 47.619 0.00 0.00 35.71 2.69
81 82 0.109179 GCGATGCCACAATGCTTCAA 60.109 50.000 0.00 0.00 35.71 2.69
82 83 1.507630 GCGATGCCACAATGCTTCA 59.492 52.632 0.00 0.00 35.71 3.02
83 84 4.389772 GCGATGCCACAATGCTTC 57.610 55.556 0.00 0.00 33.41 3.86
93 94 1.702491 GGAGTTACAACGGCGATGCC 61.702 60.000 16.62 4.24 46.75 4.40
94 95 1.713830 GGAGTTACAACGGCGATGC 59.286 57.895 16.62 0.00 0.00 3.91
95 96 1.995991 CGGAGTTACAACGGCGATG 59.004 57.895 16.62 16.22 0.00 3.84
96 97 1.808390 GCGGAGTTACAACGGCGAT 60.808 57.895 16.62 0.00 0.00 4.58
97 98 2.431260 GCGGAGTTACAACGGCGA 60.431 61.111 16.62 0.00 0.00 5.54
98 99 3.834373 CGCGGAGTTACAACGGCG 61.834 66.667 4.80 4.80 39.82 6.46
99 100 3.484547 CCGCGGAGTTACAACGGC 61.485 66.667 24.07 0.00 37.05 5.68
100 101 3.484547 GCCGCGGAGTTACAACGG 61.485 66.667 33.48 0.00 46.50 4.44
101 102 3.484547 GGCCGCGGAGTTACAACG 61.485 66.667 33.48 0.00 0.00 4.10
102 103 2.047560 AGGCCGCGGAGTTACAAC 60.048 61.111 33.48 8.16 0.00 3.32
103 104 2.047655 CAGGCCGCGGAGTTACAA 60.048 61.111 33.48 0.00 0.00 2.41
104 105 2.874664 AACAGGCCGCGGAGTTACA 61.875 57.895 33.48 0.00 0.00 2.41
105 106 2.047560 AACAGGCCGCGGAGTTAC 60.048 61.111 33.48 10.82 0.00 2.50
106 107 2.047655 CAACAGGCCGCGGAGTTA 60.048 61.111 33.48 0.00 0.00 2.24
113 114 4.347453 CTGCAACCAACAGGCCGC 62.347 66.667 0.00 0.00 0.00 6.53
114 115 4.347453 GCTGCAACCAACAGGCCG 62.347 66.667 0.00 0.00 35.62 6.13
115 116 3.225798 TGCTGCAACCAACAGGCC 61.226 61.111 0.00 0.00 35.62 5.19
116 117 2.028043 GTGCTGCAACCAACAGGC 59.972 61.111 2.77 0.00 35.62 4.85
117 118 1.066257 GTGTGCTGCAACCAACAGG 59.934 57.895 2.77 0.00 35.62 4.00
118 119 1.066257 GGTGTGCTGCAACCAACAG 59.934 57.895 21.26 0.00 38.22 3.16
119 120 2.769539 CGGTGTGCTGCAACCAACA 61.770 57.895 23.83 9.51 0.00 3.33
120 121 2.026014 CGGTGTGCTGCAACCAAC 59.974 61.111 23.83 13.98 0.00 3.77
121 122 3.898509 GCGGTGTGCTGCAACCAA 61.899 61.111 23.83 3.87 45.96 3.67
148 149 4.175337 TGCTAGCCGGCCATCACC 62.175 66.667 26.15 6.49 0.00 4.02
149 150 2.590007 CTGCTAGCCGGCCATCAC 60.590 66.667 26.15 9.35 0.00 3.06
150 151 4.552365 GCTGCTAGCCGGCCATCA 62.552 66.667 26.15 17.10 40.06 3.07
151 152 4.552365 TGCTGCTAGCCGGCCATC 62.552 66.667 26.15 12.90 45.58 3.51
152 153 4.559063 CTGCTGCTAGCCGGCCAT 62.559 66.667 26.15 8.44 45.58 4.40
172 173 3.680620 TTGAAGCCCCGATGAGCCG 62.681 63.158 0.00 0.00 0.00 5.52
173 174 1.821332 CTTGAAGCCCCGATGAGCC 60.821 63.158 0.00 0.00 0.00 4.70
174 175 2.476320 GCTTGAAGCCCCGATGAGC 61.476 63.158 5.74 0.00 34.48 4.26
175 176 2.176273 CGCTTGAAGCCCCGATGAG 61.176 63.158 12.13 0.00 38.18 2.90
176 177 2.125147 CGCTTGAAGCCCCGATGA 60.125 61.111 12.13 0.00 38.18 2.92
177 178 3.204827 CCGCTTGAAGCCCCGATG 61.205 66.667 12.13 0.00 38.18 3.84
198 199 4.135153 TCTCTTCTGAGCCGCCGC 62.135 66.667 0.00 0.00 40.03 6.53
199 200 2.103934 CTCTCTTCTGAGCCGCCG 59.896 66.667 0.00 0.00 40.03 6.46
200 201 1.034838 TCTCTCTCTTCTGAGCCGCC 61.035 60.000 0.00 0.00 40.03 6.13
201 202 1.032014 ATCTCTCTCTTCTGAGCCGC 58.968 55.000 0.00 0.00 40.03 6.53
202 203 2.223782 CCAATCTCTCTCTTCTGAGCCG 60.224 54.545 0.00 0.00 40.03 5.52
203 204 3.030291 TCCAATCTCTCTCTTCTGAGCC 58.970 50.000 0.00 0.00 40.03 4.70
204 205 4.734398 TTCCAATCTCTCTCTTCTGAGC 57.266 45.455 0.00 0.00 40.03 4.26
205 206 5.581874 GCTTTTCCAATCTCTCTCTTCTGAG 59.418 44.000 0.00 0.00 41.51 3.35
206 207 5.012458 TGCTTTTCCAATCTCTCTCTTCTGA 59.988 40.000 0.00 0.00 0.00 3.27
207 208 5.243981 TGCTTTTCCAATCTCTCTCTTCTG 58.756 41.667 0.00 0.00 0.00 3.02
208 209 5.248020 TCTGCTTTTCCAATCTCTCTCTTCT 59.752 40.000 0.00 0.00 0.00 2.85
209 210 5.486526 TCTGCTTTTCCAATCTCTCTCTTC 58.513 41.667 0.00 0.00 0.00 2.87
210 211 5.248020 TCTCTGCTTTTCCAATCTCTCTCTT 59.752 40.000 0.00 0.00 0.00 2.85
211 212 4.776837 TCTCTGCTTTTCCAATCTCTCTCT 59.223 41.667 0.00 0.00 0.00 3.10
212 213 5.083533 TCTCTGCTTTTCCAATCTCTCTC 57.916 43.478 0.00 0.00 0.00 3.20
213 214 5.697082 ATCTCTGCTTTTCCAATCTCTCT 57.303 39.130 0.00 0.00 0.00 3.10
214 215 7.047271 ACTAATCTCTGCTTTTCCAATCTCTC 58.953 38.462 0.00 0.00 0.00 3.20
215 216 6.956497 ACTAATCTCTGCTTTTCCAATCTCT 58.044 36.000 0.00 0.00 0.00 3.10
216 217 8.900983 ATACTAATCTCTGCTTTTCCAATCTC 57.099 34.615 0.00 0.00 0.00 2.75
217 218 8.713036 AGATACTAATCTCTGCTTTTCCAATCT 58.287 33.333 0.00 0.00 38.04 2.40
218 219 8.772705 CAGATACTAATCTCTGCTTTTCCAATC 58.227 37.037 0.00 0.00 40.65 2.67
219 220 8.270744 ACAGATACTAATCTCTGCTTTTCCAAT 58.729 33.333 0.00 0.00 40.65 3.16
220 221 7.550551 CACAGATACTAATCTCTGCTTTTCCAA 59.449 37.037 0.00 0.00 40.65 3.53
221 222 7.044181 CACAGATACTAATCTCTGCTTTTCCA 58.956 38.462 0.00 0.00 40.65 3.53
222 223 7.010923 CACACAGATACTAATCTCTGCTTTTCC 59.989 40.741 0.00 0.00 40.65 3.13
223 224 7.761704 TCACACAGATACTAATCTCTGCTTTTC 59.238 37.037 0.00 0.00 40.65 2.29
224 225 7.615403 TCACACAGATACTAATCTCTGCTTTT 58.385 34.615 0.00 0.00 40.65 2.27
225 226 7.123397 TCTCACACAGATACTAATCTCTGCTTT 59.877 37.037 0.00 0.00 40.65 3.51
226 227 6.605194 TCTCACACAGATACTAATCTCTGCTT 59.395 38.462 0.00 0.00 40.65 3.91
227 228 6.125719 TCTCACACAGATACTAATCTCTGCT 58.874 40.000 0.00 0.00 40.65 4.24
228 229 6.262049 TCTCTCACACAGATACTAATCTCTGC 59.738 42.308 0.00 0.00 40.65 4.26
229 230 7.518211 CGTCTCTCACACAGATACTAATCTCTG 60.518 44.444 0.00 0.00 40.65 3.35
230 231 6.481976 CGTCTCTCACACAGATACTAATCTCT 59.518 42.308 0.00 0.00 40.65 3.10
231 232 6.259167 ACGTCTCTCACACAGATACTAATCTC 59.741 42.308 0.00 0.00 40.65 2.75
232 233 6.037720 CACGTCTCTCACACAGATACTAATCT 59.962 42.308 0.00 0.00 43.54 2.40
233 234 6.195868 CACGTCTCTCACACAGATACTAATC 58.804 44.000 0.00 0.00 0.00 1.75
234 235 5.066634 CCACGTCTCTCACACAGATACTAAT 59.933 44.000 0.00 0.00 0.00 1.73
235 236 4.395231 CCACGTCTCTCACACAGATACTAA 59.605 45.833 0.00 0.00 0.00 2.24
236 237 3.939592 CCACGTCTCTCACACAGATACTA 59.060 47.826 0.00 0.00 0.00 1.82
237 238 2.750166 CCACGTCTCTCACACAGATACT 59.250 50.000 0.00 0.00 0.00 2.12
238 239 2.159366 CCCACGTCTCTCACACAGATAC 60.159 54.545 0.00 0.00 0.00 2.24
239 240 2.092323 CCCACGTCTCTCACACAGATA 58.908 52.381 0.00 0.00 0.00 1.98
240 241 0.891373 CCCACGTCTCTCACACAGAT 59.109 55.000 0.00 0.00 0.00 2.90
241 242 1.179174 CCCCACGTCTCTCACACAGA 61.179 60.000 0.00 0.00 0.00 3.41
242 243 1.179174 TCCCCACGTCTCTCACACAG 61.179 60.000 0.00 0.00 0.00 3.66
243 244 1.152631 TCCCCACGTCTCTCACACA 60.153 57.895 0.00 0.00 0.00 3.72
244 245 1.179814 AGTCCCCACGTCTCTCACAC 61.180 60.000 0.00 0.00 0.00 3.82
245 246 0.402887 TAGTCCCCACGTCTCTCACA 59.597 55.000 0.00 0.00 0.00 3.58
246 247 1.096416 CTAGTCCCCACGTCTCTCAC 58.904 60.000 0.00 0.00 0.00 3.51
247 248 0.034380 CCTAGTCCCCACGTCTCTCA 60.034 60.000 0.00 0.00 0.00 3.27
248 249 0.752376 CCCTAGTCCCCACGTCTCTC 60.752 65.000 0.00 0.00 0.00 3.20
249 250 1.212934 TCCCTAGTCCCCACGTCTCT 61.213 60.000 0.00 0.00 0.00 3.10
250 251 0.752376 CTCCCTAGTCCCCACGTCTC 60.752 65.000 0.00 0.00 0.00 3.36
251 252 1.212934 TCTCCCTAGTCCCCACGTCT 61.213 60.000 0.00 0.00 0.00 4.18
252 253 0.106116 ATCTCCCTAGTCCCCACGTC 60.106 60.000 0.00 0.00 0.00 4.34
253 254 1.229131 TATCTCCCTAGTCCCCACGT 58.771 55.000 0.00 0.00 0.00 4.49
254 255 2.240279 CTTATCTCCCTAGTCCCCACG 58.760 57.143 0.00 0.00 0.00 4.94
255 256 2.179424 TCCTTATCTCCCTAGTCCCCAC 59.821 54.545 0.00 0.00 0.00 4.61
256 257 2.521286 TCCTTATCTCCCTAGTCCCCA 58.479 52.381 0.00 0.00 0.00 4.96
257 258 3.632420 TTCCTTATCTCCCTAGTCCCC 57.368 52.381 0.00 0.00 0.00 4.81
258 259 4.296056 TGTTTCCTTATCTCCCTAGTCCC 58.704 47.826 0.00 0.00 0.00 4.46
259 260 5.367060 ACATGTTTCCTTATCTCCCTAGTCC 59.633 44.000 0.00 0.00 0.00 3.85
260 261 6.284459 CACATGTTTCCTTATCTCCCTAGTC 58.716 44.000 0.00 0.00 0.00 2.59
261 262 5.131142 CCACATGTTTCCTTATCTCCCTAGT 59.869 44.000 0.00 0.00 0.00 2.57
262 263 5.615289 CCACATGTTTCCTTATCTCCCTAG 58.385 45.833 0.00 0.00 0.00 3.02
263 264 4.141482 GCCACATGTTTCCTTATCTCCCTA 60.141 45.833 0.00 0.00 0.00 3.53
264 265 3.372025 GCCACATGTTTCCTTATCTCCCT 60.372 47.826 0.00 0.00 0.00 4.20
265 266 2.952310 GCCACATGTTTCCTTATCTCCC 59.048 50.000 0.00 0.00 0.00 4.30
266 267 3.629398 CAGCCACATGTTTCCTTATCTCC 59.371 47.826 0.00 0.00 0.00 3.71
267 268 4.517285 TCAGCCACATGTTTCCTTATCTC 58.483 43.478 0.00 0.00 0.00 2.75
268 269 4.225942 TCTCAGCCACATGTTTCCTTATCT 59.774 41.667 0.00 0.00 0.00 1.98
269 270 4.517285 TCTCAGCCACATGTTTCCTTATC 58.483 43.478 0.00 0.00 0.00 1.75
270 271 4.521146 CTCTCAGCCACATGTTTCCTTAT 58.479 43.478 0.00 0.00 0.00 1.73
271 272 3.307691 CCTCTCAGCCACATGTTTCCTTA 60.308 47.826 0.00 0.00 0.00 2.69
272 273 2.553904 CCTCTCAGCCACATGTTTCCTT 60.554 50.000 0.00 0.00 0.00 3.36
273 274 1.004044 CCTCTCAGCCACATGTTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
274 275 1.457346 CCTCTCAGCCACATGTTTCC 58.543 55.000 0.00 0.00 0.00 3.13
275 276 0.807496 GCCTCTCAGCCACATGTTTC 59.193 55.000 0.00 0.00 0.00 2.78
276 277 0.403271 AGCCTCTCAGCCACATGTTT 59.597 50.000 0.00 0.00 0.00 2.83
277 278 0.403271 AAGCCTCTCAGCCACATGTT 59.597 50.000 0.00 0.00 0.00 2.71
278 279 0.035630 GAAGCCTCTCAGCCACATGT 60.036 55.000 0.00 0.00 0.00 3.21
279 280 1.088340 CGAAGCCTCTCAGCCACATG 61.088 60.000 0.00 0.00 0.00 3.21
280 281 1.220206 CGAAGCCTCTCAGCCACAT 59.780 57.895 0.00 0.00 0.00 3.21
281 282 2.659016 CGAAGCCTCTCAGCCACA 59.341 61.111 0.00 0.00 0.00 4.17
294 295 1.908247 CTCGTTCTTTCTCTCGCGAAG 59.092 52.381 11.33 10.97 0.00 3.79
295 296 1.534163 TCTCGTTCTTTCTCTCGCGAA 59.466 47.619 11.33 0.02 0.00 4.70
296 297 1.154197 TCTCGTTCTTTCTCTCGCGA 58.846 50.000 9.26 9.26 0.00 5.87
297 298 2.181426 ATCTCGTTCTTTCTCTCGCG 57.819 50.000 0.00 0.00 0.00 5.87
298 299 4.039032 CCTTATCTCGTTCTTTCTCTCGC 58.961 47.826 0.00 0.00 0.00 5.03
299 300 4.335874 TCCCTTATCTCGTTCTTTCTCTCG 59.664 45.833 0.00 0.00 0.00 4.04
300 301 5.584442 GTCCCTTATCTCGTTCTTTCTCTC 58.416 45.833 0.00 0.00 0.00 3.20
301 302 4.096682 CGTCCCTTATCTCGTTCTTTCTCT 59.903 45.833 0.00 0.00 0.00 3.10
302 303 4.352887 CGTCCCTTATCTCGTTCTTTCTC 58.647 47.826 0.00 0.00 0.00 2.87
303 304 3.429135 GCGTCCCTTATCTCGTTCTTTCT 60.429 47.826 0.00 0.00 0.00 2.52
304 305 2.858941 GCGTCCCTTATCTCGTTCTTTC 59.141 50.000 0.00 0.00 0.00 2.62
305 306 2.734492 CGCGTCCCTTATCTCGTTCTTT 60.734 50.000 0.00 0.00 0.00 2.52
306 307 1.202268 CGCGTCCCTTATCTCGTTCTT 60.202 52.381 0.00 0.00 0.00 2.52
307 308 0.381089 CGCGTCCCTTATCTCGTTCT 59.619 55.000 0.00 0.00 0.00 3.01
308 309 0.100146 ACGCGTCCCTTATCTCGTTC 59.900 55.000 5.58 0.00 0.00 3.95
309 310 0.179145 CACGCGTCCCTTATCTCGTT 60.179 55.000 9.86 0.00 0.00 3.85
310 311 1.432251 CACGCGTCCCTTATCTCGT 59.568 57.895 9.86 0.00 0.00 4.18
311 312 1.299165 CCACGCGTCCCTTATCTCG 60.299 63.158 9.86 0.00 0.00 4.04
312 313 1.067582 CCCACGCGTCCCTTATCTC 59.932 63.158 9.86 0.00 0.00 2.75
313 314 3.090219 GCCCACGCGTCCCTTATCT 62.090 63.158 9.86 0.00 0.00 1.98
314 315 2.588034 GCCCACGCGTCCCTTATC 60.588 66.667 9.86 0.00 0.00 1.75
315 316 3.081409 AGCCCACGCGTCCCTTAT 61.081 61.111 9.86 0.00 41.18 1.73
316 317 4.077184 CAGCCCACGCGTCCCTTA 62.077 66.667 9.86 0.00 41.18 2.69
319 320 2.660258 ATAATCAGCCCACGCGTCCC 62.660 60.000 9.86 0.00 41.18 4.46
320 321 1.227556 ATAATCAGCCCACGCGTCC 60.228 57.895 9.86 0.00 41.18 4.79
321 322 0.810031 ACATAATCAGCCCACGCGTC 60.810 55.000 9.86 0.00 41.18 5.19
322 323 1.089481 CACATAATCAGCCCACGCGT 61.089 55.000 5.58 5.58 41.18 6.01
323 324 1.643292 CACATAATCAGCCCACGCG 59.357 57.895 3.53 3.53 41.18 6.01
324 325 0.748005 ACCACATAATCAGCCCACGC 60.748 55.000 0.00 0.00 0.00 5.34
325 326 1.016627 CACCACATAATCAGCCCACG 58.983 55.000 0.00 0.00 0.00 4.94
326 327 1.392589 CCACCACATAATCAGCCCAC 58.607 55.000 0.00 0.00 0.00 4.61
327 328 0.395586 GCCACCACATAATCAGCCCA 60.396 55.000 0.00 0.00 0.00 5.36
328 329 0.106519 AGCCACCACATAATCAGCCC 60.107 55.000 0.00 0.00 0.00 5.19
329 330 2.498167 CTAGCCACCACATAATCAGCC 58.502 52.381 0.00 0.00 0.00 4.85
330 331 1.876156 GCTAGCCACCACATAATCAGC 59.124 52.381 2.29 0.00 0.00 4.26
331 332 2.138320 CGCTAGCCACCACATAATCAG 58.862 52.381 9.66 0.00 0.00 2.90
332 333 1.760029 TCGCTAGCCACCACATAATCA 59.240 47.619 9.66 0.00 0.00 2.57
333 334 2.408050 CTCGCTAGCCACCACATAATC 58.592 52.381 9.66 0.00 0.00 1.75
334 335 1.541233 GCTCGCTAGCCACCACATAAT 60.541 52.381 9.66 0.00 43.40 1.28
335 336 0.179084 GCTCGCTAGCCACCACATAA 60.179 55.000 9.66 0.00 43.40 1.90
336 337 1.441729 GCTCGCTAGCCACCACATA 59.558 57.895 9.66 0.00 43.40 2.29
337 338 2.187946 GCTCGCTAGCCACCACAT 59.812 61.111 9.66 0.00 43.40 3.21
338 339 4.435436 CGCTCGCTAGCCACCACA 62.435 66.667 9.66 0.00 46.68 4.17
339 340 3.432051 ATCGCTCGCTAGCCACCAC 62.432 63.158 9.66 0.00 46.68 4.16
340 341 3.147595 ATCGCTCGCTAGCCACCA 61.148 61.111 9.66 0.00 46.68 4.17
341 342 2.659897 CATCGCTCGCTAGCCACC 60.660 66.667 9.66 0.00 46.68 4.61
342 343 3.333969 GCATCGCTCGCTAGCCAC 61.334 66.667 9.66 0.00 46.68 5.01
343 344 4.931188 CGCATCGCTCGCTAGCCA 62.931 66.667 9.66 0.00 46.68 4.75
346 347 3.966104 TCCCGCATCGCTCGCTAG 61.966 66.667 0.00 0.00 0.00 3.42
347 348 4.266070 GTCCCGCATCGCTCGCTA 62.266 66.667 0.00 0.00 0.00 4.26
350 351 4.933064 GAGGTCCCGCATCGCTCG 62.933 72.222 0.00 0.00 0.00 5.03
351 352 4.933064 CGAGGTCCCGCATCGCTC 62.933 72.222 0.00 0.00 44.34 5.03
355 356 2.509336 CACACGAGGTCCCGCATC 60.509 66.667 0.00 0.00 0.00 3.91
356 357 2.879233 AACACACGAGGTCCCGCAT 61.879 57.895 0.00 0.00 0.00 4.73
357 358 3.542676 AACACACGAGGTCCCGCA 61.543 61.111 0.00 0.00 0.00 5.69
358 359 3.041940 CAACACACGAGGTCCCGC 61.042 66.667 0.00 0.00 0.00 6.13
359 360 0.812412 AAACAACACACGAGGTCCCG 60.812 55.000 0.00 0.00 0.00 5.14
360 361 0.661020 CAAACAACACACGAGGTCCC 59.339 55.000 0.00 0.00 0.00 4.46
361 362 1.658994 TCAAACAACACACGAGGTCC 58.341 50.000 0.00 0.00 0.00 4.46
362 363 2.096909 CGATCAAACAACACACGAGGTC 60.097 50.000 0.00 0.00 0.00 3.85
363 364 1.864711 CGATCAAACAACACACGAGGT 59.135 47.619 0.00 0.00 0.00 3.85
364 365 1.194547 CCGATCAAACAACACACGAGG 59.805 52.381 0.00 0.00 0.00 4.63
365 366 2.096909 GTCCGATCAAACAACACACGAG 60.097 50.000 0.00 0.00 0.00 4.18
366 367 1.862201 GTCCGATCAAACAACACACGA 59.138 47.619 0.00 0.00 0.00 4.35
367 368 1.396690 CGTCCGATCAAACAACACACG 60.397 52.381 0.00 0.00 0.00 4.49
368 369 1.070175 CCGTCCGATCAAACAACACAC 60.070 52.381 0.00 0.00 0.00 3.82
369 370 1.222300 CCGTCCGATCAAACAACACA 58.778 50.000 0.00 0.00 0.00 3.72
370 371 0.110373 GCCGTCCGATCAAACAACAC 60.110 55.000 0.00 0.00 0.00 3.32
371 372 1.231958 GGCCGTCCGATCAAACAACA 61.232 55.000 0.00 0.00 0.00 3.33
372 373 1.500396 GGCCGTCCGATCAAACAAC 59.500 57.895 0.00 0.00 0.00 3.32
373 374 1.673009 GGGCCGTCCGATCAAACAA 60.673 57.895 0.00 0.00 0.00 2.83
374 375 2.046700 GGGCCGTCCGATCAAACA 60.047 61.111 0.00 0.00 0.00 2.83
375 376 2.046700 TGGGCCGTCCGATCAAAC 60.047 61.111 0.00 0.00 38.76 2.93
376 377 2.267642 CTGGGCCGTCCGATCAAA 59.732 61.111 0.00 0.00 38.76 2.69
377 378 4.467084 GCTGGGCCGTCCGATCAA 62.467 66.667 0.00 0.00 38.76 2.57
379 380 4.899239 CTGCTGGGCCGTCCGATC 62.899 72.222 0.00 0.00 38.76 3.69
386 387 4.451150 TTACTCGCTGCTGGGCCG 62.451 66.667 0.00 0.00 0.00 6.13
387 388 2.820037 GTTACTCGCTGCTGGGCC 60.820 66.667 0.00 0.00 0.00 5.80
388 389 3.188786 CGTTACTCGCTGCTGGGC 61.189 66.667 2.54 0.00 0.00 5.36
397 398 1.265732 CGATCAACAACGCGTTACTCG 60.266 52.381 26.11 21.58 43.12 4.18
398 399 1.058695 CCGATCAACAACGCGTTACTC 59.941 52.381 26.11 14.78 35.52 2.59
399 400 1.065358 CCGATCAACAACGCGTTACT 58.935 50.000 26.11 11.83 35.52 2.24
400 401 1.062258 TCCGATCAACAACGCGTTAC 58.938 50.000 26.11 10.63 35.52 2.50
401 402 1.656594 CATCCGATCAACAACGCGTTA 59.343 47.619 26.11 9.73 35.52 3.18
402 403 0.442310 CATCCGATCAACAACGCGTT 59.558 50.000 20.79 20.79 38.83 4.84
403 404 1.358725 CCATCCGATCAACAACGCGT 61.359 55.000 5.58 5.58 0.00 6.01
404 405 1.348250 CCATCCGATCAACAACGCG 59.652 57.895 3.53 3.53 0.00 6.01
405 406 1.062525 GCCATCCGATCAACAACGC 59.937 57.895 0.00 0.00 0.00 4.84
406 407 1.714899 GGGCCATCCGATCAACAACG 61.715 60.000 4.39 0.00 0.00 4.10
407 408 2.106844 GGGCCATCCGATCAACAAC 58.893 57.895 4.39 0.00 0.00 3.32
408 409 4.655921 GGGCCATCCGATCAACAA 57.344 55.556 4.39 0.00 0.00 2.83
452 453 2.741211 GTTTCTGACCGGTCCGCC 60.741 66.667 31.19 12.42 0.00 6.13
453 454 3.110178 CGTTTCTGACCGGTCCGC 61.110 66.667 31.19 15.01 0.00 5.54
454 455 0.877213 AAACGTTTCTGACCGGTCCG 60.877 55.000 31.19 26.64 0.00 4.79
455 456 0.863799 GAAACGTTTCTGACCGGTCC 59.136 55.000 31.19 14.56 34.41 4.46
456 457 0.863799 GGAAACGTTTCTGACCGGTC 59.136 55.000 33.23 28.17 37.35 4.79
457 458 0.533531 GGGAAACGTTTCTGACCGGT 60.534 55.000 33.23 6.92 37.35 5.28
458 459 0.250166 AGGGAAACGTTTCTGACCGG 60.250 55.000 33.23 0.00 37.35 5.28
459 460 1.529865 GAAGGGAAACGTTTCTGACCG 59.470 52.381 33.23 0.00 38.82 4.79
460 461 2.548480 CAGAAGGGAAACGTTTCTGACC 59.452 50.000 33.23 26.69 46.88 4.02
461 462 3.203716 ACAGAAGGGAAACGTTTCTGAC 58.796 45.455 33.23 24.52 46.88 3.51
462 463 3.553828 ACAGAAGGGAAACGTTTCTGA 57.446 42.857 33.23 0.00 46.88 3.27
464 465 4.820173 CCTTAACAGAAGGGAAACGTTTCT 59.180 41.667 33.23 18.84 38.82 2.52
465 466 4.818005 TCCTTAACAGAAGGGAAACGTTTC 59.182 41.667 28.83 28.83 38.82 2.78
466 467 4.784177 TCCTTAACAGAAGGGAAACGTTT 58.216 39.130 14.57 14.57 38.82 3.60
467 468 4.102054 TCTCCTTAACAGAAGGGAAACGTT 59.898 41.667 0.00 0.00 42.01 3.99
468 469 3.644738 TCTCCTTAACAGAAGGGAAACGT 59.355 43.478 3.58 0.00 37.99 3.99
469 470 4.267349 TCTCCTTAACAGAAGGGAAACG 57.733 45.455 3.58 0.00 37.99 3.60
476 477 5.245075 AGACAGTCCTTCTCCTTAACAGAAG 59.755 44.000 10.66 10.66 44.54 2.85
477 478 5.011125 CAGACAGTCCTTCTCCTTAACAGAA 59.989 44.000 0.00 0.00 0.00 3.02
478 479 4.524714 CAGACAGTCCTTCTCCTTAACAGA 59.475 45.833 0.00 0.00 0.00 3.41
483 484 2.180276 GCCAGACAGTCCTTCTCCTTA 58.820 52.381 0.00 0.00 0.00 2.69
484 485 0.980423 GCCAGACAGTCCTTCTCCTT 59.020 55.000 0.00 0.00 0.00 3.36
510 511 2.404559 AGGGACCTGGATTATGCGTTA 58.595 47.619 0.00 0.00 0.00 3.18
518 519 0.325296 TCGCACTAGGGACCTGGATT 60.325 55.000 8.84 0.00 0.00 3.01
519 520 1.310030 TCGCACTAGGGACCTGGAT 59.690 57.895 8.84 0.00 0.00 3.41
528 529 3.077556 AGGCTGGGTCGCACTAGG 61.078 66.667 0.00 0.00 0.00 3.02
635 645 2.164624 GAGAGCTAAAGACGAGAAGGCA 59.835 50.000 0.00 0.00 0.00 4.75
649 659 0.716591 TGGAAGAAGGGGGAGAGCTA 59.283 55.000 0.00 0.00 0.00 3.32
652 662 1.617947 CCGTGGAAGAAGGGGGAGAG 61.618 65.000 0.00 0.00 0.00 3.20
656 666 2.609610 TCCCGTGGAAGAAGGGGG 60.610 66.667 2.34 0.00 43.48 5.40
666 676 1.376037 GCTTCTGAAGGTCCCGTGG 60.376 63.158 18.38 0.00 0.00 4.94
683 693 1.227943 TGTGGACAGCAGTTGGAGC 60.228 57.895 0.00 0.00 0.00 4.70
896 910 3.497115 TGTGGCTCTGGTGGGCAA 61.497 61.111 0.00 0.00 40.77 4.52
905 919 0.178950 TCTCAGACAGGTGTGGCTCT 60.179 55.000 0.00 0.00 37.60 4.09
918 932 1.048601 GGGTGAACTGTGGTCTCAGA 58.951 55.000 6.99 0.00 38.63 3.27
941 955 7.179338 AGAGTAGTATGTGATCTTCAGGTGTTT 59.821 37.037 0.00 0.00 0.00 2.83
943 957 6.191315 AGAGTAGTATGTGATCTTCAGGTGT 58.809 40.000 0.00 0.00 0.00 4.16
984 1001 1.721664 CCATCGATGCCAACTGCCTG 61.722 60.000 20.25 0.00 40.16 4.85
1119 1145 0.458543 ACGGCATCAGCTCGTTGTAG 60.459 55.000 0.00 0.00 42.27 2.74
1380 1406 6.317642 GGAACTTTTATGCCTTTTGTTTTGGT 59.682 34.615 0.00 0.00 0.00 3.67
1388 1414 4.217767 GTCTCGGGAACTTTTATGCCTTTT 59.782 41.667 0.00 0.00 0.00 2.27
1389 1415 3.756963 GTCTCGGGAACTTTTATGCCTTT 59.243 43.478 0.00 0.00 0.00 3.11
1390 1416 3.344515 GTCTCGGGAACTTTTATGCCTT 58.655 45.455 0.00 0.00 0.00 4.35
1397 1423 2.904697 AGAACGTCTCGGGAACTTTT 57.095 45.000 0.00 0.00 0.00 2.27
1447 1476 3.005791 GTGCCCAATTTATACCCTGCATC 59.994 47.826 0.00 0.00 0.00 3.91
1519 1552 5.359009 ACAGCAGAACATTTCATAATGGGAG 59.641 40.000 0.00 0.00 44.42 4.30
1521 1554 5.587388 ACAGCAGAACATTTCATAATGGG 57.413 39.130 0.00 0.00 44.42 4.00
1527 1560 4.326278 CGTACGTACAGCAGAACATTTCAT 59.674 41.667 24.50 0.00 0.00 2.57
1530 1563 3.645884 ACGTACGTACAGCAGAACATTT 58.354 40.909 21.41 0.00 0.00 2.32
1554 1587 6.338214 ACTCATGTATAGTACATCTGCAGG 57.662 41.667 15.13 0.36 45.83 4.85
1556 1589 5.763204 TCGACTCATGTATAGTACATCTGCA 59.237 40.000 0.00 0.00 45.83 4.41
1557 1590 6.081049 GTCGACTCATGTATAGTACATCTGC 58.919 44.000 8.70 0.00 45.83 4.26
1589 1684 1.783284 TCAGAACATATGGCGCGATC 58.217 50.000 12.10 0.51 0.00 3.69
1604 1699 5.958380 ACACTACATAATGGGAGAGTTCAGA 59.042 40.000 0.00 0.00 0.00 3.27
1607 1702 6.313905 CACAACACTACATAATGGGAGAGTTC 59.686 42.308 0.00 0.00 0.00 3.01
1608 1703 6.173339 CACAACACTACATAATGGGAGAGTT 58.827 40.000 0.00 0.00 0.00 3.01
1609 1704 5.248477 ACACAACACTACATAATGGGAGAGT 59.752 40.000 0.00 0.00 0.00 3.24
1610 1705 5.734720 ACACAACACTACATAATGGGAGAG 58.265 41.667 0.00 0.00 0.00 3.20
1624 1719 3.438781 CACACACTGGTTTACACAACACT 59.561 43.478 0.00 0.00 0.00 3.55
1663 1758 5.221641 CCAACGATTATTCATGGAGGGAGTA 60.222 44.000 0.00 0.00 32.67 2.59
1698 1794 5.468072 GCCGTTGAGATAATCTGTTGATCAT 59.532 40.000 0.00 0.00 31.51 2.45
1720 1816 9.177304 GTTAAACAATGTAGAAGTAAAACTGCC 57.823 33.333 0.00 0.00 0.00 4.85
1744 1840 0.319728 ACTCTGTGCTGCATCTCGTT 59.680 50.000 5.27 0.00 0.00 3.85
1761 1857 6.605471 TGATTGTTATCCTACACAGTGACT 57.395 37.500 7.81 0.00 0.00 3.41
1774 1870 4.260620 GGTGCGTACCACATGATTGTTATC 60.261 45.833 18.66 0.00 46.50 1.75
1777 1873 1.810151 GGTGCGTACCACATGATTGTT 59.190 47.619 18.66 0.00 46.50 2.83
1797 1893 2.000447 CGGAAGCCTCTTTTTCTACCG 59.000 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.