Multiple sequence alignment - TraesCS1B01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G310200 chr1B 100.000 3074 0 0 1 3074 533087759 533090832 0.000000e+00 5677.0
1 TraesCS1B01G310200 chr1D 91.912 2782 151 25 15 2768 397629351 397632086 0.000000e+00 3823.0
2 TraesCS1B01G310200 chr1D 93.631 157 8 2 2766 2921 397632131 397632286 1.840000e-57 233.0
3 TraesCS1B01G310200 chr1D 95.041 121 6 0 2954 3074 397632560 397632680 1.130000e-44 191.0
4 TraesCS1B01G310200 chr1A 93.359 1852 96 7 593 2428 495129169 495131009 0.000000e+00 2713.0
5 TraesCS1B01G310200 chr1A 87.410 556 42 12 17 569 495128304 495128834 5.630000e-172 614.0
6 TraesCS1B01G310200 chr1A 90.909 319 18 7 2766 3074 495131130 495131447 4.740000e-113 418.0
7 TraesCS1B01G310200 chr1A 89.474 57 5 1 2552 2607 495131073 495131129 1.530000e-08 71.3
8 TraesCS1B01G310200 chr5D 95.714 210 8 1 922 1131 386867622 386867414 1.370000e-88 337.0
9 TraesCS1B01G310200 chr5D 93.088 217 13 2 1168 1383 386867428 386867213 1.780000e-82 316.0
10 TraesCS1B01G310200 chr5B 88.235 255 18 5 1187 1429 464895915 464895661 8.340000e-76 294.0
11 TraesCS1B01G310200 chr5B 95.000 140 6 1 949 1087 464896088 464895949 5.160000e-53 219.0
12 TraesCS1B01G310200 chr5B 95.238 126 5 1 1160 1284 60909930 60910055 6.720000e-47 198.0
13 TraesCS1B01G310200 chr3A 98.438 128 2 0 1160 1287 503028560 503028687 3.080000e-55 226.0
14 TraesCS1B01G310200 chr3A 82.500 200 30 5 1861 2058 594590693 594590497 1.470000e-38 171.0
15 TraesCS1B01G310200 chr2B 82.374 278 24 11 1177 1429 49516140 49515863 5.160000e-53 219.0
16 TraesCS1B01G310200 chr3D 81.500 200 32 5 1861 2058 452240248 452240052 3.170000e-35 159.0
17 TraesCS1B01G310200 chr3D 97.143 35 1 0 1160 1194 329686691 329686657 3.310000e-05 60.2
18 TraesCS1B01G310200 chr3B 82.011 189 31 3 1861 2048 593921604 593921418 1.140000e-34 158.0
19 TraesCS1B01G310200 chr5A 97.403 77 1 1 1162 1238 413187109 413187034 2.490000e-26 130.0
20 TraesCS1B01G310200 chr7A 92.857 84 4 2 1162 1244 62891118 62891200 1.500000e-23 121.0
21 TraesCS1B01G310200 chr7D 91.667 84 5 2 1162 1244 579339209 579339291 6.970000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G310200 chr1B 533087759 533090832 3073 False 5677.000000 5677 100.000 1 3074 1 chr1B.!!$F1 3073
1 TraesCS1B01G310200 chr1D 397629351 397632680 3329 False 1415.666667 3823 93.528 15 3074 3 chr1D.!!$F1 3059
2 TraesCS1B01G310200 chr1A 495128304 495131447 3143 False 954.075000 2713 90.288 17 3074 4 chr1A.!!$F1 3057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 301 0.107017 CTGGCAATGGATCTTCCCGT 60.107 55.0 0.0 0.0 35.03 5.28 F
773 1089 0.107848 ACGCTGCCGCTATTTAACCT 60.108 50.0 0.0 0.0 38.22 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1783 0.79264 CCGTCACTCTTGATGCACAC 59.207 55.0 0.0 0.0 37.43 3.82 R
2382 2734 0.79264 CAAGTGTAGTGCTCAAGCCG 59.207 55.0 0.0 0.0 41.18 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.685097 GTGTCCTCACAGCCCACTTA 59.315 55.000 0.00 0.00 43.37 2.24
34 35 1.279271 GTGTCCTCACAGCCCACTTAT 59.721 52.381 0.00 0.00 43.37 1.73
40 41 1.086696 CACAGCCCACTTATGTTCGG 58.913 55.000 0.00 0.00 0.00 4.30
51 52 5.872617 CCACTTATGTTCGGTGTTAGATTGA 59.127 40.000 0.00 0.00 0.00 2.57
142 143 7.936301 TCCTTTTCTTTTGAATACCCATTTTGG 59.064 33.333 0.00 0.00 38.37 3.28
188 191 6.315642 TGCAAGTTGAATGCTTGATTGAAAAA 59.684 30.769 7.16 0.00 44.29 1.94
220 223 3.784338 CTTTCGCCGGTACATAGGTTAA 58.216 45.455 1.90 0.00 0.00 2.01
255 258 3.383185 AGAAAGTCGCCATTTTGGTTTGA 59.617 39.130 0.00 0.00 40.46 2.69
265 268 5.759763 GCCATTTTGGTTTGAGAGTTTCAAT 59.240 36.000 0.00 0.00 40.73 2.57
275 278 9.750125 GGTTTGAGAGTTTCAATTGATTTAGTT 57.250 29.630 9.40 0.00 44.90 2.24
298 301 0.107017 CTGGCAATGGATCTTCCCGT 60.107 55.000 0.00 0.00 35.03 5.28
302 305 3.222603 GGCAATGGATCTTCCCGTTATT 58.777 45.455 0.00 0.00 35.03 1.40
310 313 5.183228 GGATCTTCCCGTTATTGACTCAAA 58.817 41.667 0.00 0.00 0.00 2.69
338 341 0.687354 GAGGTGCTGACAAAGGAGGA 59.313 55.000 0.00 0.00 0.00 3.71
343 346 1.494721 TGCTGACAAAGGAGGAAGGTT 59.505 47.619 0.00 0.00 0.00 3.50
366 369 4.463050 ACTTGGTACCATTTGGGAGAAA 57.537 40.909 17.17 0.00 41.15 2.52
422 425 1.230281 AGAAGGGCCAATGAGGGGA 60.230 57.895 6.18 0.00 38.09 4.81
423 426 0.628668 AGAAGGGCCAATGAGGGGAT 60.629 55.000 6.18 0.00 38.09 3.85
424 427 0.468771 GAAGGGCCAATGAGGGGATG 60.469 60.000 6.18 0.00 38.09 3.51
425 428 1.953100 AAGGGCCAATGAGGGGATGG 61.953 60.000 6.18 0.00 38.09 3.51
426 429 2.199535 GGCCAATGAGGGGATGGG 59.800 66.667 0.00 0.00 38.09 4.00
427 430 2.199535 GCCAATGAGGGGATGGGG 59.800 66.667 0.00 0.00 38.09 4.96
428 431 2.704424 GCCAATGAGGGGATGGGGT 61.704 63.158 0.00 0.00 38.09 4.95
429 432 1.360393 GCCAATGAGGGGATGGGGTA 61.360 60.000 0.00 0.00 38.09 3.69
430 433 0.773644 CCAATGAGGGGATGGGGTAG 59.226 60.000 0.00 0.00 0.00 3.18
431 434 1.698928 CCAATGAGGGGATGGGGTAGA 60.699 57.143 0.00 0.00 0.00 2.59
432 435 1.701847 CAATGAGGGGATGGGGTAGAG 59.298 57.143 0.00 0.00 0.00 2.43
433 436 1.255033 ATGAGGGGATGGGGTAGAGA 58.745 55.000 0.00 0.00 0.00 3.10
462 465 1.817941 GTGGTGCACCGTCAAGTGT 60.818 57.895 30.07 0.00 40.04 3.55
475 478 2.591311 AAGTGTGCCGCAACGTACG 61.591 57.895 15.01 15.01 0.00 3.67
481 484 2.446253 GCCGCAACGTACGTGCATA 61.446 57.895 28.95 0.00 0.00 3.14
498 501 1.120530 ATACGGTACAAGCTCCCCTG 58.879 55.000 0.00 0.00 0.00 4.45
499 502 1.610554 TACGGTACAAGCTCCCCTGC 61.611 60.000 0.00 0.00 0.00 4.85
501 504 1.609783 GGTACAAGCTCCCCTGCAT 59.390 57.895 0.00 0.00 34.99 3.96
506 509 0.531532 CAAGCTCCCCTGCATACGAG 60.532 60.000 0.00 0.00 34.99 4.18
519 522 5.919141 CCTGCATACGAGTAGTAATTGTACC 59.081 44.000 0.00 0.00 39.04 3.34
520 523 5.513376 TGCATACGAGTAGTAATTGTACCG 58.487 41.667 0.00 0.00 39.04 4.02
529 532 4.030134 AGTAATTGTACCGCTCTCTTCG 57.970 45.455 0.00 0.00 0.00 3.79
560 564 4.750098 TGCAGCTTCAGTACAACTTTAGTC 59.250 41.667 0.00 0.00 0.00 2.59
587 591 4.928661 ATAAAGTTGTACTCAAGCTGCG 57.071 40.909 0.00 0.00 33.97 5.18
598 913 5.725110 ACTCAAGCTGCGTCAATTAATAG 57.275 39.130 0.00 0.00 0.00 1.73
730 1046 1.591703 GGAGCCTCATGTCACACGA 59.408 57.895 0.00 0.00 0.00 4.35
773 1089 0.107848 ACGCTGCCGCTATTTAACCT 60.108 50.000 0.00 0.00 38.22 3.50
875 1196 1.920325 CCCCTGCTCCACTTCTCCA 60.920 63.158 0.00 0.00 0.00 3.86
1053 1374 4.907034 CATCGGTCCTCGTCGGCG 62.907 72.222 1.15 1.15 40.32 6.46
1165 1507 1.653151 GGAGGTAAGCAACGACATCC 58.347 55.000 0.00 0.00 39.15 3.51
1166 1508 1.066430 GGAGGTAAGCAACGACATCCA 60.066 52.381 1.09 0.00 44.20 3.41
1167 1509 2.271800 GAGGTAAGCAACGACATCCAG 58.728 52.381 0.00 0.00 0.00 3.86
1168 1510 0.727398 GGTAAGCAACGACATCCAGC 59.273 55.000 0.00 0.00 0.00 4.85
1169 1511 1.438651 GTAAGCAACGACATCCAGCA 58.561 50.000 0.00 0.00 0.00 4.41
1170 1512 1.394917 GTAAGCAACGACATCCAGCAG 59.605 52.381 0.00 0.00 0.00 4.24
1171 1513 1.580845 AAGCAACGACATCCAGCAGC 61.581 55.000 0.00 0.00 0.00 5.25
1172 1514 3.044059 GCAACGACATCCAGCAGCC 62.044 63.158 0.00 0.00 0.00 4.85
1173 1515 2.434884 AACGACATCCAGCAGCCG 60.435 61.111 0.00 0.00 0.00 5.52
1174 1516 3.958147 AACGACATCCAGCAGCCGG 62.958 63.158 0.00 0.00 0.00 6.13
1175 1517 4.147449 CGACATCCAGCAGCCGGA 62.147 66.667 5.05 0.00 36.84 5.14
1176 1518 2.202987 GACATCCAGCAGCCGGAG 60.203 66.667 5.05 0.00 35.56 4.63
1314 1656 4.452733 CCGCCGAGGGTCAAGGAC 62.453 72.222 0.00 0.00 35.97 3.85
1487 1829 4.760047 CCGGAGGCCAACGGTGAG 62.760 72.222 25.00 4.66 46.14 3.51
1533 1875 2.809601 AAGGTGATCGCGTCGCAC 60.810 61.111 18.75 17.64 39.14 5.34
1622 1967 3.063084 GGCGAGGAGACGACCTGT 61.063 66.667 5.46 0.00 40.73 4.00
1801 2146 3.365265 CCACCGCCAGGAAAGTGC 61.365 66.667 0.00 0.00 41.02 4.40
1830 2175 3.496131 CGGAAATGGACGGCACCG 61.496 66.667 7.71 7.71 46.03 4.94
1942 2287 0.883814 GGAGATGATCAGCGCCAAGG 60.884 60.000 26.27 0.00 36.66 3.61
2004 2349 2.182030 CTCTCCCTCAACGACGCC 59.818 66.667 0.00 0.00 0.00 5.68
2144 2493 3.784511 ATCCTATCCTCACCATTGCTG 57.215 47.619 0.00 0.00 0.00 4.41
2325 2674 1.942677 TTTGTTCTTTCCGTGCTCGA 58.057 45.000 10.21 0.00 39.71 4.04
2382 2734 1.131883 GATGGTGTGATGCTGCTCAAC 59.868 52.381 0.00 0.00 0.00 3.18
2384 2736 1.499056 GTGTGATGCTGCTCAACGG 59.501 57.895 0.00 0.00 0.00 4.44
2441 2795 0.826256 ATGCCATGCCATGCCAGTAG 60.826 55.000 0.00 0.00 0.00 2.57
2466 2820 1.741770 GACCGTCACTGGTGATGCC 60.742 63.158 15.21 7.35 44.01 4.40
2550 2912 3.445096 GGAAGCCCGTCACTAGTAAGTTA 59.555 47.826 0.00 0.00 31.97 2.24
2640 3006 0.526524 GCTGAAGTGGTCCGATCGAG 60.527 60.000 18.66 6.99 0.00 4.04
2641 3007 0.811915 CTGAAGTGGTCCGATCGAGT 59.188 55.000 18.66 0.00 0.00 4.18
2642 3008 0.526211 TGAAGTGGTCCGATCGAGTG 59.474 55.000 18.66 0.00 0.00 3.51
2644 3010 0.611062 AAGTGGTCCGATCGAGTGGA 60.611 55.000 18.66 1.59 0.00 4.02
2645 3011 0.395862 AGTGGTCCGATCGAGTGGAT 60.396 55.000 18.66 0.00 36.48 3.41
2646 3012 0.249073 GTGGTCCGATCGAGTGGATG 60.249 60.000 18.66 0.00 36.48 3.51
2654 3020 2.474816 GATCGAGTGGATGGTTGTAGC 58.525 52.381 0.00 0.00 34.82 3.58
2656 3022 0.806102 CGAGTGGATGGTTGTAGCCG 60.806 60.000 0.00 0.00 0.00 5.52
2681 3047 5.870706 TCAGATGTAGGTGATCGTAGAGAT 58.129 41.667 0.00 0.00 43.63 2.75
2683 3049 6.874664 TCAGATGTAGGTGATCGTAGAGATAC 59.125 42.308 0.00 0.00 43.63 2.24
2703 3069 1.255342 CAGTGCGACATACGGATTTCG 59.745 52.381 11.85 11.85 45.03 3.46
2789 3207 4.286032 AGCCTCCATTTCTACTGTTGTACA 59.714 41.667 0.00 0.00 0.00 2.90
2889 3310 1.236616 TGGTGTTGAATGCTCGGCAG 61.237 55.000 4.90 0.00 43.65 4.85
2923 3344 2.370519 TGTTGCTCCTTACCAACTGCTA 59.629 45.455 5.30 0.00 41.34 3.49
2956 3618 3.664025 CTTGATGGCCCGAGACGCA 62.664 63.158 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.175184 GAGGACACATGTGCACGCAC 62.175 60.000 25.68 15.20 46.33 5.34
3 4 1.960763 GAGGACACATGTGCACGCA 60.961 57.895 25.68 0.00 38.96 5.24
4 5 1.960763 TGAGGACACATGTGCACGC 60.961 57.895 25.68 19.16 38.96 5.34
5 6 1.862123 GTGAGGACACATGTGCACG 59.138 57.895 25.68 2.21 45.32 5.34
25 26 1.530323 AACACCGAACATAAGTGGGC 58.470 50.000 0.00 0.00 35.79 5.36
33 34 4.253685 CCAGTCAATCTAACACCGAACAT 58.746 43.478 0.00 0.00 0.00 2.71
34 35 3.659786 CCAGTCAATCTAACACCGAACA 58.340 45.455 0.00 0.00 0.00 3.18
40 41 3.119459 TCGAGAGCCAGTCAATCTAACAC 60.119 47.826 0.00 0.00 0.00 3.32
51 52 1.668101 GACGGGAATCGAGAGCCAGT 61.668 60.000 6.50 6.50 42.43 4.00
142 143 4.614535 GCATCACACCATCTTTCAACTCAC 60.615 45.833 0.00 0.00 0.00 3.51
220 223 4.157840 GGCGACTTTCTGTATCCCAAAATT 59.842 41.667 0.00 0.00 0.00 1.82
255 258 7.869429 CAGCCAAACTAAATCAATTGAAACTCT 59.131 33.333 13.09 0.00 0.00 3.24
265 268 4.563168 CCATTGCCAGCCAAACTAAATCAA 60.563 41.667 0.00 0.00 36.92 2.57
275 278 1.477553 GAAGATCCATTGCCAGCCAA 58.522 50.000 0.00 0.00 37.94 4.52
298 301 5.278266 CCTCGCCAAGTTTTTGAGTCAATAA 60.278 40.000 6.36 5.49 36.36 1.40
302 305 1.946768 CCTCGCCAAGTTTTTGAGTCA 59.053 47.619 0.00 0.00 36.36 3.41
310 313 1.148273 TCAGCACCTCGCCAAGTTT 59.852 52.632 0.00 0.00 44.04 2.66
338 341 4.836175 CCCAAATGGTACCAAGTTAACCTT 59.164 41.667 20.76 2.63 34.23 3.50
343 346 5.586155 TTCTCCCAAATGGTACCAAGTTA 57.414 39.130 20.76 1.82 34.77 2.24
366 369 3.244009 CGGCTCTCCATCATACACAAGAT 60.244 47.826 0.00 0.00 0.00 2.40
443 446 1.523711 CACTTGACGGTGCACCACT 60.524 57.895 34.16 19.38 34.40 4.00
444 447 1.817941 ACACTTGACGGTGCACCAC 60.818 57.895 34.16 26.01 40.52 4.16
464 467 1.342473 GTATGCACGTACGTTGCGG 59.658 57.895 26.17 15.67 0.00 5.69
475 478 1.287425 GGAGCTTGTACCGTATGCAC 58.713 55.000 0.00 0.00 0.00 4.57
479 482 1.120530 CAGGGGAGCTTGTACCGTAT 58.879 55.000 0.00 0.00 0.00 3.06
481 484 2.955881 GCAGGGGAGCTTGTACCGT 61.956 63.158 0.00 0.00 0.00 4.83
487 490 0.531532 CTCGTATGCAGGGGAGCTTG 60.532 60.000 0.00 0.00 34.99 4.01
498 501 4.380974 GCGGTACAATTACTACTCGTATGC 59.619 45.833 0.00 0.00 0.00 3.14
499 502 5.755813 AGCGGTACAATTACTACTCGTATG 58.244 41.667 0.00 0.00 0.00 2.39
501 504 5.118990 AGAGCGGTACAATTACTACTCGTA 58.881 41.667 0.00 0.00 36.25 3.43
506 509 4.968788 CGAAGAGAGCGGTACAATTACTAC 59.031 45.833 0.00 0.00 0.00 2.73
519 522 3.311966 TGCATCATATTCGAAGAGAGCG 58.688 45.455 3.35 0.00 38.43 5.03
520 523 3.123284 GCTGCATCATATTCGAAGAGAGC 59.877 47.826 3.35 5.27 38.43 4.09
529 532 6.259608 AGTTGTACTGAAGCTGCATCATATTC 59.740 38.462 8.12 0.00 0.00 1.75
560 564 8.543774 GCAGCTTGAGTACAACTTTATATACTG 58.456 37.037 0.00 0.00 32.27 2.74
625 940 6.629128 CCACACTGGATTTATGCACAATAAA 58.371 36.000 0.00 0.00 43.28 1.40
630 945 1.818060 GCCACACTGGATTTATGCACA 59.182 47.619 0.00 0.00 40.96 4.57
631 946 1.202177 CGCCACACTGGATTTATGCAC 60.202 52.381 0.00 0.00 40.96 4.57
712 1028 0.176680 ATCGTGTGACATGAGGCTCC 59.823 55.000 13.44 0.00 32.64 4.70
822 1138 3.261643 ACCAGGGAGGAAATGAAAAATGC 59.738 43.478 0.00 0.00 41.22 3.56
823 1139 4.081476 GGACCAGGGAGGAAATGAAAAATG 60.081 45.833 0.00 0.00 41.22 2.32
1026 1347 2.589540 GACCGATGATGCACCCCA 59.410 61.111 0.00 0.00 0.00 4.96
1053 1374 4.840005 GGCTGCTGGTAGGACCGC 62.840 72.222 0.00 5.79 42.58 5.68
1131 1452 1.382695 CTCCCTGTACCACCCGGAT 60.383 63.158 0.73 0.00 35.59 4.18
1135 1456 1.201424 CTTACCTCCCTGTACCACCC 58.799 60.000 0.00 0.00 0.00 4.61
1141 1462 1.547372 GTCGTTGCTTACCTCCCTGTA 59.453 52.381 0.00 0.00 0.00 2.74
1302 1644 4.373116 TGCGCGTCCTTGACCCTC 62.373 66.667 8.43 0.00 0.00 4.30
1339 1681 2.738521 CACCTTGTGTCGCCTCCG 60.739 66.667 0.00 0.00 0.00 4.63
1347 1689 2.203153 GCGTGGTCCACCTTGTGT 60.203 61.111 16.60 0.00 36.82 3.72
1441 1783 0.792640 CCGTCACTCTTGATGCACAC 59.207 55.000 0.00 0.00 37.43 3.82
1533 1875 3.544834 GCAGGTCGATGATGATTTCGTTG 60.545 47.826 0.00 0.00 36.74 4.10
1617 1962 3.865929 CTGCTCGTTCGGCACAGGT 62.866 63.158 4.78 0.00 35.71 4.00
1622 1967 2.125552 CATCCTGCTCGTTCGGCA 60.126 61.111 7.75 7.75 38.10 5.69
1953 2298 2.119611 TCCTCCAGGTCTTCCGCA 59.880 61.111 0.00 0.00 39.05 5.69
2004 2349 0.809636 TTATGAGGTCATGGTGCGCG 60.810 55.000 0.00 0.00 37.15 6.86
2070 2415 2.345991 CCGGCGGGTCTCTTTCAA 59.654 61.111 20.56 0.00 0.00 2.69
2144 2493 9.341899 CCAATTAATCTAGTTAATTAATGCCGC 57.658 33.333 16.11 0.00 46.27 6.53
2325 2674 3.228188 TCCAGCAAAGAAGAACCACAT 57.772 42.857 0.00 0.00 0.00 3.21
2382 2734 0.792640 CAAGTGTAGTGCTCAAGCCG 59.207 55.000 0.00 0.00 41.18 5.52
2384 2736 2.614057 ACAACAAGTGTAGTGCTCAAGC 59.386 45.455 0.00 0.00 39.29 4.01
2513 2867 2.603953 GCTTCCAGTGACGGTTACTAC 58.396 52.381 5.16 0.00 0.00 2.73
2550 2912 3.753272 GACATTCATGCCAGTAACAGTGT 59.247 43.478 0.00 0.00 0.00 3.55
2612 2978 3.192844 CGGACCACTTCAGCTTACTAGAA 59.807 47.826 0.00 0.00 0.00 2.10
2622 2988 0.811915 ACTCGATCGGACCACTTCAG 59.188 55.000 16.41 4.16 0.00 3.02
2640 3006 1.134521 TGATCGGCTACAACCATCCAC 60.135 52.381 0.00 0.00 0.00 4.02
2641 3007 1.138859 CTGATCGGCTACAACCATCCA 59.861 52.381 0.00 0.00 0.00 3.41
2642 3008 1.412710 TCTGATCGGCTACAACCATCC 59.587 52.381 0.00 0.00 0.00 3.51
2644 3010 2.435805 ACATCTGATCGGCTACAACCAT 59.564 45.455 0.00 0.00 0.00 3.55
2645 3011 1.831106 ACATCTGATCGGCTACAACCA 59.169 47.619 0.00 0.00 0.00 3.67
2646 3012 2.604046 ACATCTGATCGGCTACAACC 57.396 50.000 0.00 0.00 0.00 3.77
2656 3022 5.935206 TCTCTACGATCACCTACATCTGATC 59.065 44.000 0.00 0.00 39.57 2.92
2681 3047 3.441163 GAAATCCGTATGTCGCACTGTA 58.559 45.455 0.00 0.00 38.35 2.74
2683 3049 1.255342 CGAAATCCGTATGTCGCACTG 59.745 52.381 0.00 0.00 36.11 3.66
2703 3069 3.610911 AGGCAGGCTGAATTAACTACAC 58.389 45.455 20.86 0.00 0.00 2.90
2710 3076 3.110705 AGAAGAGAGGCAGGCTGAATTA 58.889 45.455 20.86 0.00 0.00 1.40
2789 3207 1.471119 ATGGATGGAGTACACGTCGT 58.529 50.000 0.00 0.00 0.00 4.34
2851 3270 5.163248 ACACCAGGGGAAAAACAAATAAAGG 60.163 40.000 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.