Multiple sequence alignment - TraesCS1B01G310000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G310000 chr1B 100.000 2357 0 0 1 2357 532683987 532686343 0.000000e+00 4353
1 TraesCS1B01G310000 chr1B 90.028 361 28 3 1996 2350 532548280 532548638 5.940000e-126 460
2 TraesCS1B01G310000 chr1B 98.367 245 4 0 91 335 91965678 91965434 4.650000e-117 431
3 TraesCS1B01G310000 chr1B 86.331 278 14 5 339 609 532548010 532548270 4.960000e-72 281
4 TraesCS1B01G310000 chr1D 94.667 1350 66 5 621 1966 60171821 60170474 0.000000e+00 2089
5 TraesCS1B01G310000 chr1D 93.787 1352 73 8 623 1966 247505764 247504416 0.000000e+00 2021
6 TraesCS1B01G310000 chr1D 87.213 305 9 9 331 620 397215602 397215891 1.050000e-83 320
7 TraesCS1B01G310000 chr1D 84.592 331 29 9 1996 2317 397215886 397216203 2.280000e-80 309
8 TraesCS1B01G310000 chr2D 94.415 1343 70 4 628 1966 73126871 73125530 0.000000e+00 2060
9 TraesCS1B01G310000 chr2D 93.903 1345 74 6 627 1966 621748802 621750143 0.000000e+00 2023
10 TraesCS1B01G310000 chr7B 94.449 1333 68 5 616 1945 720163401 720162072 0.000000e+00 2047
11 TraesCS1B01G310000 chr3D 93.890 1342 77 4 628 1965 584701391 584700051 0.000000e+00 2019
12 TraesCS1B01G310000 chr7D 94.131 1329 73 4 642 1966 50081816 50080489 0.000000e+00 2017
13 TraesCS1B01G310000 chr7D 93.639 1352 78 7 615 1962 497560896 497562243 0.000000e+00 2013
14 TraesCS1B01G310000 chr6D 93.713 1352 76 6 617 1963 142136703 142135356 0.000000e+00 2017
15 TraesCS1B01G310000 chr2A 98.780 246 3 0 88 333 553492273 553492518 2.780000e-119 438
16 TraesCS1B01G310000 chr5A 99.174 242 2 0 91 332 633646075 633646316 1.000000e-118 436
17 TraesCS1B01G310000 chr4A 99.174 242 2 0 90 331 492533622 492533863 1.000000e-118 436
18 TraesCS1B01G310000 chr3A 98.394 249 3 1 85 333 19876610 19876363 1.000000e-118 436
19 TraesCS1B01G310000 chr3A 98.770 244 3 0 88 331 178130360 178130603 3.600000e-118 435
20 TraesCS1B01G310000 chr6B 98.000 250 5 0 83 332 702697142 702697391 3.600000e-118 435
21 TraesCS1B01G310000 chr1A 98.770 244 3 0 90 333 580495062 580495305 3.600000e-118 435
22 TraesCS1B01G310000 chr1A 90.566 265 20 3 2073 2334 494752385 494752647 1.730000e-91 346
23 TraesCS1B01G310000 chr1A 96.154 156 5 1 456 611 494752138 494752292 1.080000e-63 254
24 TraesCS1B01G310000 chr1A 94.444 90 5 0 1 90 494744389 494744478 3.160000e-29 139
25 TraesCS1B01G310000 chr3B 97.992 249 5 0 83 331 587434684 587434436 1.290000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G310000 chr1B 532683987 532686343 2356 False 4353.0 4353 100.0000 1 2357 1 chr1B.!!$F1 2356
1 TraesCS1B01G310000 chr1B 532548010 532548638 628 False 370.5 460 88.1795 339 2350 2 chr1B.!!$F2 2011
2 TraesCS1B01G310000 chr1D 60170474 60171821 1347 True 2089.0 2089 94.6670 621 1966 1 chr1D.!!$R1 1345
3 TraesCS1B01G310000 chr1D 247504416 247505764 1348 True 2021.0 2021 93.7870 623 1966 1 chr1D.!!$R2 1343
4 TraesCS1B01G310000 chr1D 397215602 397216203 601 False 314.5 320 85.9025 331 2317 2 chr1D.!!$F1 1986
5 TraesCS1B01G310000 chr2D 73125530 73126871 1341 True 2060.0 2060 94.4150 628 1966 1 chr2D.!!$R1 1338
6 TraesCS1B01G310000 chr2D 621748802 621750143 1341 False 2023.0 2023 93.9030 627 1966 1 chr2D.!!$F1 1339
7 TraesCS1B01G310000 chr7B 720162072 720163401 1329 True 2047.0 2047 94.4490 616 1945 1 chr7B.!!$R1 1329
8 TraesCS1B01G310000 chr3D 584700051 584701391 1340 True 2019.0 2019 93.8900 628 1965 1 chr3D.!!$R1 1337
9 TraesCS1B01G310000 chr7D 50080489 50081816 1327 True 2017.0 2017 94.1310 642 1966 1 chr7D.!!$R1 1324
10 TraesCS1B01G310000 chr7D 497560896 497562243 1347 False 2013.0 2013 93.6390 615 1962 1 chr7D.!!$F1 1347
11 TraesCS1B01G310000 chr6D 142135356 142136703 1347 True 2017.0 2017 93.7130 617 1963 1 chr6D.!!$R1 1346
12 TraesCS1B01G310000 chr1A 494752138 494752647 509 False 300.0 346 93.3600 456 2334 2 chr1A.!!$F3 1878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.036306 ATCATAATCCGAACCCGCCC 59.964 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2015 0.179094 TTCCACTCAGTCGCGTGTTT 60.179 50.0 5.77 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.226242 ACTCCAACACGCACTCCA 58.774 55.556 0.00 0.00 0.00 3.86
18 19 1.754745 ACTCCAACACGCACTCCAT 59.245 52.632 0.00 0.00 0.00 3.41
19 20 0.603707 ACTCCAACACGCACTCCATG 60.604 55.000 0.00 0.00 0.00 3.66
20 21 0.603707 CTCCAACACGCACTCCATGT 60.604 55.000 0.00 0.00 0.00 3.21
21 22 0.682292 TCCAACACGCACTCCATGTA 59.318 50.000 0.00 0.00 0.00 2.29
22 23 1.277842 TCCAACACGCACTCCATGTAT 59.722 47.619 0.00 0.00 0.00 2.29
23 24 1.665679 CCAACACGCACTCCATGTATC 59.334 52.381 0.00 0.00 0.00 2.24
24 25 2.345876 CAACACGCACTCCATGTATCA 58.654 47.619 0.00 0.00 0.00 2.15
25 26 2.938451 CAACACGCACTCCATGTATCAT 59.062 45.455 0.00 0.00 0.00 2.45
26 27 4.119136 CAACACGCACTCCATGTATCATA 58.881 43.478 0.00 0.00 0.00 2.15
27 28 4.400529 ACACGCACTCCATGTATCATAA 57.599 40.909 0.00 0.00 0.00 1.90
28 29 4.960938 ACACGCACTCCATGTATCATAAT 58.039 39.130 0.00 0.00 0.00 1.28
29 30 4.991056 ACACGCACTCCATGTATCATAATC 59.009 41.667 0.00 0.00 0.00 1.75
30 31 4.389992 CACGCACTCCATGTATCATAATCC 59.610 45.833 0.00 0.00 0.00 3.01
31 32 3.614176 CGCACTCCATGTATCATAATCCG 59.386 47.826 0.00 0.00 0.00 4.18
32 33 4.618227 CGCACTCCATGTATCATAATCCGA 60.618 45.833 0.00 0.00 0.00 4.55
33 34 5.237815 GCACTCCATGTATCATAATCCGAA 58.762 41.667 0.00 0.00 0.00 4.30
34 35 5.120830 GCACTCCATGTATCATAATCCGAAC 59.879 44.000 0.00 0.00 0.00 3.95
35 36 5.639506 CACTCCATGTATCATAATCCGAACC 59.360 44.000 0.00 0.00 0.00 3.62
36 37 5.160607 TCCATGTATCATAATCCGAACCC 57.839 43.478 0.00 0.00 0.00 4.11
37 38 3.932710 CCATGTATCATAATCCGAACCCG 59.067 47.826 0.00 0.00 0.00 5.28
38 39 3.034721 TGTATCATAATCCGAACCCGC 57.965 47.619 0.00 0.00 0.00 6.13
39 40 2.289195 TGTATCATAATCCGAACCCGCC 60.289 50.000 0.00 0.00 0.00 6.13
40 41 0.036306 ATCATAATCCGAACCCGCCC 59.964 55.000 0.00 0.00 0.00 6.13
41 42 1.147376 CATAATCCGAACCCGCCCA 59.853 57.895 0.00 0.00 0.00 5.36
42 43 0.464735 CATAATCCGAACCCGCCCAA 60.465 55.000 0.00 0.00 0.00 4.12
43 44 0.464916 ATAATCCGAACCCGCCCAAC 60.465 55.000 0.00 0.00 0.00 3.77
44 45 2.540028 TAATCCGAACCCGCCCAACC 62.540 60.000 0.00 0.00 0.00 3.77
47 48 4.939368 CGAACCCGCCCAACCACA 62.939 66.667 0.00 0.00 0.00 4.17
48 49 2.519780 GAACCCGCCCAACCACAA 60.520 61.111 0.00 0.00 0.00 3.33
49 50 2.520741 AACCCGCCCAACCACAAG 60.521 61.111 0.00 0.00 0.00 3.16
50 51 4.596585 ACCCGCCCAACCACAAGG 62.597 66.667 0.00 0.00 42.21 3.61
62 63 1.694639 CCACAAGGTTAGTCGACGAC 58.305 55.000 20.25 20.25 0.00 4.34
63 64 1.268899 CCACAAGGTTAGTCGACGACT 59.731 52.381 31.23 31.23 45.54 4.18
64 65 2.582687 CACAAGGTTAGTCGACGACTC 58.417 52.381 32.32 19.38 42.40 3.36
65 66 2.031420 CACAAGGTTAGTCGACGACTCA 60.031 50.000 32.32 20.34 42.40 3.41
66 67 2.225963 ACAAGGTTAGTCGACGACTCAG 59.774 50.000 32.32 18.31 42.40 3.35
67 68 2.469274 AGGTTAGTCGACGACTCAGA 57.531 50.000 32.32 17.40 42.40 3.27
68 69 2.075338 AGGTTAGTCGACGACTCAGAC 58.925 52.381 32.32 25.72 42.40 3.51
69 70 1.130186 GGTTAGTCGACGACTCAGACC 59.870 57.143 32.32 29.45 42.40 3.85
70 71 1.073964 TTAGTCGACGACTCAGACCG 58.926 55.000 32.32 0.00 42.40 4.79
71 72 0.037882 TAGTCGACGACTCAGACCGT 60.038 55.000 32.32 10.36 42.40 4.83
72 73 1.154450 GTCGACGACTCAGACCGTG 60.154 63.158 20.52 0.00 39.30 4.94
73 74 2.502080 CGACGACTCAGACCGTGC 60.502 66.667 1.84 0.00 39.30 5.34
74 75 2.126424 GACGACTCAGACCGTGCC 60.126 66.667 1.84 0.00 39.30 5.01
75 76 2.910479 ACGACTCAGACCGTGCCA 60.910 61.111 0.00 0.00 37.64 4.92
76 77 2.126307 CGACTCAGACCGTGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
77 78 2.262915 GACTCAGACCGTGCCAGG 59.737 66.667 0.00 0.00 37.30 4.45
79 80 2.047844 CTCAGACCGTGCCAGGTG 60.048 66.667 4.83 0.00 46.09 4.00
80 81 4.314440 TCAGACCGTGCCAGGTGC 62.314 66.667 4.83 0.00 46.09 5.01
85 86 4.063967 CCGTGCCAGGTGCGAGTA 62.064 66.667 6.40 0.00 45.60 2.59
86 87 2.507102 CGTGCCAGGTGCGAGTAG 60.507 66.667 0.00 0.00 45.60 2.57
87 88 2.657237 GTGCCAGGTGCGAGTAGT 59.343 61.111 0.00 0.00 45.60 2.73
88 89 1.888018 GTGCCAGGTGCGAGTAGTA 59.112 57.895 0.00 0.00 45.60 1.82
89 90 0.245539 GTGCCAGGTGCGAGTAGTAA 59.754 55.000 0.00 0.00 45.60 2.24
90 91 1.134788 GTGCCAGGTGCGAGTAGTAAT 60.135 52.381 0.00 0.00 45.60 1.89
91 92 2.100252 GTGCCAGGTGCGAGTAGTAATA 59.900 50.000 0.00 0.00 45.60 0.98
92 93 2.100252 TGCCAGGTGCGAGTAGTAATAC 59.900 50.000 0.00 0.00 45.60 1.89
93 94 2.361438 GCCAGGTGCGAGTAGTAATACT 59.639 50.000 1.76 1.76 0.00 2.12
94 95 3.550436 GCCAGGTGCGAGTAGTAATACTC 60.550 52.174 18.25 18.25 42.18 2.59
95 96 3.004524 CCAGGTGCGAGTAGTAATACTCC 59.995 52.174 21.29 15.25 42.52 3.85
96 97 3.004524 CAGGTGCGAGTAGTAATACTCCC 59.995 52.174 21.29 16.97 42.52 4.30
97 98 3.117587 AGGTGCGAGTAGTAATACTCCCT 60.118 47.826 21.29 18.60 42.52 4.20
98 99 3.252944 GGTGCGAGTAGTAATACTCCCTC 59.747 52.174 21.29 14.32 42.52 4.30
99 100 3.252944 GTGCGAGTAGTAATACTCCCTCC 59.747 52.174 21.29 10.15 42.52 4.30
100 101 2.483491 GCGAGTAGTAATACTCCCTCCG 59.517 54.545 21.29 12.82 42.52 4.63
101 102 3.737850 CGAGTAGTAATACTCCCTCCGT 58.262 50.000 21.29 0.00 42.52 4.69
102 103 4.133078 CGAGTAGTAATACTCCCTCCGTT 58.867 47.826 21.29 0.00 42.52 4.44
103 104 4.213059 CGAGTAGTAATACTCCCTCCGTTC 59.787 50.000 21.29 0.00 42.52 3.95
104 105 4.468713 AGTAGTAATACTCCCTCCGTTCC 58.531 47.826 0.00 0.00 0.00 3.62
105 106 3.393426 AGTAATACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
106 107 3.716431 AGTAATACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
107 108 4.098894 AGTAATACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
108 109 4.533311 AGTAATACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
109 110 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
110 111 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
111 112 5.906772 ATACTCCCTCCGTTCCAAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
112 113 7.383156 AATACTCCCTCCGTTCCAAAATATA 57.617 36.000 0.00 0.00 0.00 0.86
113 114 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
114 115 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
115 116 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
116 117 2.223377 CCTCCGTTCCAAAATATAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
117 118 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
118 119 1.595794 CCGTTCCAAAATATAGCGCGT 59.404 47.619 8.43 0.00 0.00 6.01
119 120 2.348218 CCGTTCCAAAATATAGCGCGTC 60.348 50.000 8.43 0.00 0.00 5.19
120 121 2.348218 CGTTCCAAAATATAGCGCGTCC 60.348 50.000 8.43 0.00 0.00 4.79
121 122 2.870411 GTTCCAAAATATAGCGCGTCCT 59.130 45.455 8.43 0.00 0.00 3.85
122 123 2.750948 TCCAAAATATAGCGCGTCCTC 58.249 47.619 8.43 0.00 0.00 3.71
123 124 1.455786 CCAAAATATAGCGCGTCCTCG 59.544 52.381 8.43 0.00 40.37 4.63
124 125 1.455786 CAAAATATAGCGCGTCCTCGG 59.544 52.381 8.43 0.00 37.56 4.63
125 126 0.672342 AAATATAGCGCGTCCTCGGT 59.328 50.000 8.43 0.00 43.07 4.69
126 127 0.672342 AATATAGCGCGTCCTCGGTT 59.328 50.000 8.43 0.00 40.82 4.44
127 128 0.672342 ATATAGCGCGTCCTCGGTTT 59.328 50.000 8.43 0.00 40.82 3.27
128 129 0.457035 TATAGCGCGTCCTCGGTTTT 59.543 50.000 8.43 0.00 40.82 2.43
129 130 0.804933 ATAGCGCGTCCTCGGTTTTC 60.805 55.000 8.43 0.00 40.82 2.29
130 131 4.130281 GCGCGTCCTCGGTTTTCG 62.130 66.667 8.43 0.00 40.90 3.46
131 132 2.732094 CGCGTCCTCGGTTTTCGT 60.732 61.111 0.00 0.00 40.32 3.85
132 133 2.851104 GCGTCCTCGGTTTTCGTG 59.149 61.111 0.00 0.00 40.32 4.35
133 134 2.851104 CGTCCTCGGTTTTCGTGC 59.149 61.111 0.00 0.00 40.32 5.34
134 135 1.663702 CGTCCTCGGTTTTCGTGCT 60.664 57.895 0.00 0.00 40.32 4.40
135 136 1.219522 CGTCCTCGGTTTTCGTGCTT 61.220 55.000 0.00 0.00 40.32 3.91
136 137 0.511653 GTCCTCGGTTTTCGTGCTTC 59.488 55.000 0.00 0.00 40.32 3.86
137 138 0.105224 TCCTCGGTTTTCGTGCTTCA 59.895 50.000 0.00 0.00 40.32 3.02
138 139 0.941542 CCTCGGTTTTCGTGCTTCAA 59.058 50.000 0.00 0.00 40.32 2.69
139 140 1.333791 CCTCGGTTTTCGTGCTTCAAC 60.334 52.381 0.00 0.00 40.32 3.18
140 141 1.597663 CTCGGTTTTCGTGCTTCAACT 59.402 47.619 0.00 0.00 40.32 3.16
141 142 2.011222 TCGGTTTTCGTGCTTCAACTT 58.989 42.857 0.00 0.00 40.32 2.66
142 143 2.420722 TCGGTTTTCGTGCTTCAACTTT 59.579 40.909 0.00 0.00 40.32 2.66
143 144 2.529894 CGGTTTTCGTGCTTCAACTTTG 59.470 45.455 0.00 0.00 0.00 2.77
144 145 3.729462 CGGTTTTCGTGCTTCAACTTTGA 60.729 43.478 0.00 0.00 34.92 2.69
145 146 3.546271 GGTTTTCGTGCTTCAACTTTGAC 59.454 43.478 0.00 0.00 36.83 3.18
146 147 3.414549 TTTCGTGCTTCAACTTTGACC 57.585 42.857 0.00 0.00 36.83 4.02
147 148 2.031258 TCGTGCTTCAACTTTGACCA 57.969 45.000 0.00 0.00 36.83 4.02
148 149 2.571212 TCGTGCTTCAACTTTGACCAT 58.429 42.857 0.00 0.00 36.83 3.55
149 150 2.948979 TCGTGCTTCAACTTTGACCATT 59.051 40.909 0.00 0.00 36.83 3.16
150 151 4.130857 TCGTGCTTCAACTTTGACCATTA 58.869 39.130 0.00 0.00 36.83 1.90
151 152 4.576873 TCGTGCTTCAACTTTGACCATTAA 59.423 37.500 0.00 0.00 36.83 1.40
152 153 5.240623 TCGTGCTTCAACTTTGACCATTAAT 59.759 36.000 0.00 0.00 36.83 1.40
153 154 5.920273 CGTGCTTCAACTTTGACCATTAATT 59.080 36.000 0.00 0.00 36.83 1.40
154 155 6.420604 CGTGCTTCAACTTTGACCATTAATTT 59.579 34.615 0.00 0.00 36.83 1.82
155 156 7.593273 CGTGCTTCAACTTTGACCATTAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
156 157 9.255304 GTGCTTCAACTTTGACCATTAATTTAA 57.745 29.630 0.00 0.00 36.83 1.52
157 158 9.995003 TGCTTCAACTTTGACCATTAATTTAAT 57.005 25.926 0.00 0.00 36.83 1.40
167 168 9.921637 TTGACCATTAATTTAATCAACAAGACC 57.078 29.630 0.00 0.00 0.00 3.85
168 169 8.240682 TGACCATTAATTTAATCAACAAGACCG 58.759 33.333 0.00 0.00 0.00 4.79
169 170 8.343168 ACCATTAATTTAATCAACAAGACCGA 57.657 30.769 0.00 0.00 0.00 4.69
170 171 8.241367 ACCATTAATTTAATCAACAAGACCGAC 58.759 33.333 0.00 0.00 0.00 4.79
171 172 8.458843 CCATTAATTTAATCAACAAGACCGACT 58.541 33.333 0.00 0.00 0.00 4.18
172 173 9.277565 CATTAATTTAATCAACAAGACCGACTG 57.722 33.333 0.00 0.00 0.00 3.51
173 174 4.742438 TTTAATCAACAAGACCGACTGC 57.258 40.909 0.00 0.00 0.00 4.40
174 175 1.148310 AATCAACAAGACCGACTGCG 58.852 50.000 0.00 0.00 37.24 5.18
249 250 7.825331 TTATATAATTTTTGATCCCACCGCA 57.175 32.000 0.00 0.00 0.00 5.69
250 251 4.654091 ATAATTTTTGATCCCACCGCAG 57.346 40.909 0.00 0.00 0.00 5.18
251 252 1.923356 ATTTTTGATCCCACCGCAGT 58.077 45.000 0.00 0.00 0.00 4.40
252 253 1.243902 TTTTTGATCCCACCGCAGTC 58.756 50.000 0.00 0.00 0.00 3.51
253 254 0.953471 TTTTGATCCCACCGCAGTCG 60.953 55.000 0.00 0.00 0.00 4.18
263 264 4.778415 CGCAGTCGGTCTCGTGGG 62.778 72.222 0.00 0.00 37.69 4.61
264 265 3.681835 GCAGTCGGTCTCGTGGGT 61.682 66.667 0.00 0.00 37.69 4.51
265 266 3.048602 CAGTCGGTCTCGTGGGTT 58.951 61.111 0.00 0.00 37.69 4.11
266 267 1.870055 GCAGTCGGTCTCGTGGGTTA 61.870 60.000 0.00 0.00 37.69 2.85
267 268 0.599558 CAGTCGGTCTCGTGGGTTAA 59.400 55.000 0.00 0.00 37.69 2.01
268 269 1.000060 CAGTCGGTCTCGTGGGTTAAA 60.000 52.381 0.00 0.00 37.69 1.52
269 270 1.897802 AGTCGGTCTCGTGGGTTAAAT 59.102 47.619 0.00 0.00 37.69 1.40
270 271 2.301009 AGTCGGTCTCGTGGGTTAAATT 59.699 45.455 0.00 0.00 37.69 1.82
271 272 3.069289 GTCGGTCTCGTGGGTTAAATTT 58.931 45.455 0.00 0.00 37.69 1.82
272 273 4.021192 AGTCGGTCTCGTGGGTTAAATTTA 60.021 41.667 0.00 0.00 37.69 1.40
273 274 4.872124 GTCGGTCTCGTGGGTTAAATTTAT 59.128 41.667 0.00 0.00 37.69 1.40
274 275 4.871557 TCGGTCTCGTGGGTTAAATTTATG 59.128 41.667 0.00 0.00 37.69 1.90
275 276 4.034742 CGGTCTCGTGGGTTAAATTTATGG 59.965 45.833 0.00 0.00 0.00 2.74
276 277 4.945543 GGTCTCGTGGGTTAAATTTATGGT 59.054 41.667 0.00 0.00 0.00 3.55
277 278 5.065602 GGTCTCGTGGGTTAAATTTATGGTC 59.934 44.000 0.00 0.00 0.00 4.02
278 279 5.644636 GTCTCGTGGGTTAAATTTATGGTCA 59.355 40.000 0.00 0.00 0.00 4.02
279 280 6.149807 GTCTCGTGGGTTAAATTTATGGTCAA 59.850 38.462 0.00 0.00 0.00 3.18
280 281 6.715718 TCTCGTGGGTTAAATTTATGGTCAAA 59.284 34.615 0.00 0.00 0.00 2.69
281 282 6.915349 TCGTGGGTTAAATTTATGGTCAAAG 58.085 36.000 0.00 0.00 0.00 2.77
282 283 6.490721 TCGTGGGTTAAATTTATGGTCAAAGT 59.509 34.615 0.00 0.00 0.00 2.66
283 284 7.014422 TCGTGGGTTAAATTTATGGTCAAAGTT 59.986 33.333 0.00 0.00 31.36 2.66
284 285 7.115663 CGTGGGTTAAATTTATGGTCAAAGTTG 59.884 37.037 0.00 0.00 29.44 3.16
285 286 8.145122 GTGGGTTAAATTTATGGTCAAAGTTGA 58.855 33.333 0.00 0.00 34.20 3.18
286 287 8.705594 TGGGTTAAATTTATGGTCAAAGTTGAA 58.294 29.630 0.00 0.00 39.21 2.69
287 288 8.984764 GGGTTAAATTTATGGTCAAAGTTGAAC 58.015 33.333 1.98 1.98 45.04 3.18
288 289 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
289 290 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
290 291 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
291 292 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
292 293 2.992124 TGGTCAAAGTTGAACCTCGA 57.008 45.000 6.62 0.00 44.20 4.04
293 294 3.269538 TGGTCAAAGTTGAACCTCGAA 57.730 42.857 6.62 0.00 44.20 3.71
294 295 3.611970 TGGTCAAAGTTGAACCTCGAAA 58.388 40.909 6.62 0.00 44.20 3.46
295 296 4.204012 TGGTCAAAGTTGAACCTCGAAAT 58.796 39.130 6.62 0.00 44.20 2.17
296 297 4.036262 TGGTCAAAGTTGAACCTCGAAATG 59.964 41.667 6.62 0.00 44.20 2.32
297 298 3.975035 GTCAAAGTTGAACCTCGAAATGC 59.025 43.478 0.00 0.00 39.21 3.56
298 299 2.969443 AAGTTGAACCTCGAAATGCG 57.031 45.000 0.00 0.00 42.69 4.73
299 300 1.878953 AGTTGAACCTCGAAATGCGT 58.121 45.000 0.00 0.00 41.80 5.24
300 301 1.531149 AGTTGAACCTCGAAATGCGTG 59.469 47.619 0.00 0.00 41.80 5.34
304 305 3.864686 CCTCGAAATGCGTGGGCG 61.865 66.667 0.00 0.00 46.89 6.13
314 315 3.637714 CGTGGGCGCGCTATATTT 58.362 55.556 32.29 0.00 0.00 1.40
315 316 1.938861 CGTGGGCGCGCTATATTTT 59.061 52.632 32.29 0.00 0.00 1.82
316 317 0.384230 CGTGGGCGCGCTATATTTTG 60.384 55.000 32.29 9.06 0.00 2.44
317 318 0.040425 GTGGGCGCGCTATATTTTGG 60.040 55.000 32.29 0.00 0.00 3.28
318 319 0.179043 TGGGCGCGCTATATTTTGGA 60.179 50.000 32.29 0.00 0.00 3.53
319 320 0.948678 GGGCGCGCTATATTTTGGAA 59.051 50.000 32.29 0.00 0.00 3.53
320 321 1.334689 GGGCGCGCTATATTTTGGAAC 60.335 52.381 32.29 8.93 0.00 3.62
321 322 1.658968 GCGCGCTATATTTTGGAACG 58.341 50.000 26.67 0.00 0.00 3.95
322 323 1.659211 GCGCGCTATATTTTGGAACGG 60.659 52.381 26.67 0.00 0.00 4.44
323 324 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
324 325 2.096909 CGCGCTATATTTTGGAACGGAG 60.097 50.000 5.56 0.00 0.00 4.63
325 326 2.223377 GCGCTATATTTTGGAACGGAGG 59.777 50.000 0.00 0.00 0.00 4.30
326 327 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30
327 328 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
328 329 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
329 330 4.444449 GCTATATTTTGGAACGGAGGGAGT 60.444 45.833 0.00 0.00 0.00 3.85
358 359 2.033141 TCCAGCTCTTGCACAGCC 59.967 61.111 12.35 0.00 42.74 4.85
359 360 2.281970 CCAGCTCTTGCACAGCCA 60.282 61.111 12.35 0.00 42.74 4.75
360 361 2.333417 CCAGCTCTTGCACAGCCAG 61.333 63.158 12.35 6.57 42.74 4.85
361 362 2.672307 AGCTCTTGCACAGCCAGC 60.672 61.111 12.35 7.17 42.74 4.85
362 363 3.745803 GCTCTTGCACAGCCAGCC 61.746 66.667 5.63 0.00 39.41 4.85
363 364 2.281970 CTCTTGCACAGCCAGCCA 60.282 61.111 0.00 0.00 0.00 4.75
364 365 2.595463 TCTTGCACAGCCAGCCAC 60.595 61.111 0.00 0.00 0.00 5.01
377 378 0.036952 CAGCCACTGATTGTCCTCGT 60.037 55.000 0.00 0.00 32.44 4.18
411 413 2.003301 GAACGCTCTGAAATCCAGGAC 58.997 52.381 0.00 0.00 43.12 3.85
426 428 2.736682 GGACAACCAACGGATCGCG 61.737 63.158 0.00 0.00 35.97 5.87
442 444 2.256158 CGTGCGTCGGAACCTACA 59.744 61.111 0.00 0.00 35.71 2.74
443 445 1.153901 CGTGCGTCGGAACCTACAT 60.154 57.895 0.00 0.00 35.71 2.29
444 446 1.410737 CGTGCGTCGGAACCTACATG 61.411 60.000 0.00 0.00 35.71 3.21
445 447 1.447140 TGCGTCGGAACCTACATGC 60.447 57.895 0.00 0.00 0.00 4.06
446 448 2.171725 GCGTCGGAACCTACATGCC 61.172 63.158 0.00 0.00 0.00 4.40
447 449 1.520787 CGTCGGAACCTACATGCCC 60.521 63.158 0.00 0.00 0.00 5.36
448 450 1.600107 GTCGGAACCTACATGCCCA 59.400 57.895 0.00 0.00 0.00 5.36
510 512 5.245075 CCTGCACCCTTGTTTATTAGGAAAA 59.755 40.000 0.00 0.00 33.13 2.29
511 513 6.070824 CCTGCACCCTTGTTTATTAGGAAAAT 60.071 38.462 0.00 0.00 33.13 1.82
512 514 6.930731 TGCACCCTTGTTTATTAGGAAAATC 58.069 36.000 0.00 0.00 33.13 2.17
513 515 6.495181 TGCACCCTTGTTTATTAGGAAAATCA 59.505 34.615 0.00 0.00 33.13 2.57
514 516 6.811665 GCACCCTTGTTTATTAGGAAAATCAC 59.188 38.462 0.00 0.00 33.13 3.06
515 517 7.309805 GCACCCTTGTTTATTAGGAAAATCACT 60.310 37.037 0.00 0.00 33.13 3.41
516 518 8.028938 CACCCTTGTTTATTAGGAAAATCACTG 58.971 37.037 0.00 0.00 33.13 3.66
517 519 7.035612 CCCTTGTTTATTAGGAAAATCACTGC 58.964 38.462 0.00 0.00 33.13 4.40
613 629 4.507388 ACGAGTCGAAGCTACACTATAGTC 59.493 45.833 21.50 0.00 0.00 2.59
614 630 4.507021 CGAGTCGAAGCTACACTATAGTCA 59.493 45.833 6.73 0.00 0.00 3.41
615 631 5.177881 CGAGTCGAAGCTACACTATAGTCAT 59.822 44.000 6.73 0.00 0.00 3.06
616 632 6.292973 CGAGTCGAAGCTACACTATAGTCATT 60.293 42.308 6.73 0.00 0.00 2.57
617 633 7.336161 AGTCGAAGCTACACTATAGTCATTT 57.664 36.000 1.26 0.00 0.00 2.32
618 634 7.773149 AGTCGAAGCTACACTATAGTCATTTT 58.227 34.615 1.26 0.00 0.00 1.82
619 635 8.251721 AGTCGAAGCTACACTATAGTCATTTTT 58.748 33.333 1.26 0.00 0.00 1.94
620 636 8.321716 GTCGAAGCTACACTATAGTCATTTTTG 58.678 37.037 1.26 0.00 0.00 2.44
621 637 8.033038 TCGAAGCTACACTATAGTCATTTTTGT 58.967 33.333 1.26 0.00 0.00 2.83
622 638 8.656849 CGAAGCTACACTATAGTCATTTTTGTT 58.343 33.333 1.26 0.00 0.00 2.83
663 679 0.540923 GAAGCATCCTCAGCCTCTGT 59.459 55.000 0.00 0.00 32.61 3.41
671 687 2.178764 TCCTCAGCCTCTGTATCTGGAT 59.821 50.000 0.00 0.00 32.61 3.41
672 688 3.399305 TCCTCAGCCTCTGTATCTGGATA 59.601 47.826 0.00 0.00 32.61 2.59
771 787 5.301551 CCATCTAGGCAATATCTCTCGCTAT 59.698 44.000 0.00 0.00 0.00 2.97
917 933 4.056125 CCAGCGCACTCACCGAGA 62.056 66.667 11.47 0.00 33.32 4.04
927 943 4.379243 CACCGAGACTGCCGCCTT 62.379 66.667 0.00 0.00 0.00 4.35
1050 1067 3.089217 TCCATCCAGCCGCATCCA 61.089 61.111 0.00 0.00 0.00 3.41
1168 1185 1.454847 CTGGAGCTACTCGGAGCCT 60.455 63.158 4.58 0.00 43.97 4.58
1178 1195 2.076622 CTCGGAGCCTACCATCCACG 62.077 65.000 0.00 0.00 35.14 4.94
1228 1245 4.467084 GACGGCGCCTCCATGGAA 62.467 66.667 26.68 0.00 38.35 3.53
1267 1284 4.569180 CCGCCGCCCAATCCAGAT 62.569 66.667 0.00 0.00 0.00 2.90
1310 1328 2.002407 GGGGTTCGGGGGTGGATAA 61.002 63.158 0.00 0.00 0.00 1.75
1317 1335 1.072143 GGGGGTGGATAAGGGGGAT 60.072 63.158 0.00 0.00 0.00 3.85
1326 1344 1.700186 GATAAGGGGGATCTCGGCTTT 59.300 52.381 0.00 0.00 0.00 3.51
1529 1565 5.205056 AGGATCGAGAAGAACTCCTTGTAT 58.795 41.667 0.00 0.00 42.18 2.29
1535 1571 7.284074 TCGAGAAGAACTCCTTGTATATCTCT 58.716 38.462 0.00 0.00 42.18 3.10
1643 1680 1.464376 ATCCGATCTGAATCCGGCGT 61.464 55.000 6.01 0.00 0.00 5.68
1648 1685 1.330655 ATCTGAATCCGGCGTCACCT 61.331 55.000 6.01 0.00 35.61 4.00
1685 1722 3.196207 AACGCAGCCACCACCTCAT 62.196 57.895 0.00 0.00 0.00 2.90
1822 1859 1.382695 GGACGGAGAGGATGGGGAA 60.383 63.158 0.00 0.00 0.00 3.97
1896 1935 1.076632 GCGAGGAGGGAGAGAGGAA 60.077 63.158 0.00 0.00 0.00 3.36
1970 2012 4.292178 GCGAGGGGCGAGGATGAG 62.292 72.222 0.00 0.00 44.57 2.90
1971 2013 2.519541 CGAGGGGCGAGGATGAGA 60.520 66.667 0.00 0.00 44.57 3.27
1972 2014 2.560119 CGAGGGGCGAGGATGAGAG 61.560 68.421 0.00 0.00 44.57 3.20
1973 2015 1.152652 GAGGGGCGAGGATGAGAGA 60.153 63.158 0.00 0.00 0.00 3.10
1974 2016 0.757188 GAGGGGCGAGGATGAGAGAA 60.757 60.000 0.00 0.00 0.00 2.87
1975 2017 0.325671 AGGGGCGAGGATGAGAGAAA 60.326 55.000 0.00 0.00 0.00 2.52
1976 2018 0.179070 GGGGCGAGGATGAGAGAAAC 60.179 60.000 0.00 0.00 0.00 2.78
1977 2019 0.537188 GGGCGAGGATGAGAGAAACA 59.463 55.000 0.00 0.00 0.00 2.83
1978 2020 1.646189 GGCGAGGATGAGAGAAACAC 58.354 55.000 0.00 0.00 0.00 3.32
1979 2021 1.272781 GCGAGGATGAGAGAAACACG 58.727 55.000 0.00 0.00 0.00 4.49
1980 2022 1.272781 CGAGGATGAGAGAAACACGC 58.727 55.000 0.00 0.00 0.00 5.34
1981 2023 1.272781 GAGGATGAGAGAAACACGCG 58.727 55.000 3.53 3.53 0.00 6.01
1982 2024 0.888619 AGGATGAGAGAAACACGCGA 59.111 50.000 15.93 0.00 0.00 5.87
1983 2025 0.992802 GGATGAGAGAAACACGCGAC 59.007 55.000 15.93 0.00 0.00 5.19
1984 2026 1.402984 GGATGAGAGAAACACGCGACT 60.403 52.381 15.93 3.51 0.00 4.18
1985 2027 1.651138 GATGAGAGAAACACGCGACTG 59.349 52.381 15.93 3.50 0.00 3.51
1986 2028 0.666374 TGAGAGAAACACGCGACTGA 59.334 50.000 15.93 0.00 0.00 3.41
1987 2029 1.332178 GAGAGAAACACGCGACTGAG 58.668 55.000 15.93 0.00 0.00 3.35
1988 2030 0.669077 AGAGAAACACGCGACTGAGT 59.331 50.000 15.93 0.00 0.00 3.41
1993 2035 4.336581 CACGCGACTGAGTGGAAA 57.663 55.556 15.93 0.00 41.58 3.13
1995 2037 0.934496 CACGCGACTGAGTGGAAAAA 59.066 50.000 15.93 0.00 41.58 1.94
1997 2039 1.798813 ACGCGACTGAGTGGAAAAATC 59.201 47.619 15.93 0.00 0.00 2.17
2017 2059 5.582689 ATCTTTTCATTTCCAACCGGATC 57.417 39.130 9.46 0.00 42.41 3.36
2018 2060 4.662278 TCTTTTCATTTCCAACCGGATCT 58.338 39.130 9.46 0.00 42.41 2.75
2022 2064 4.837093 TCATTTCCAACCGGATCTAAGT 57.163 40.909 9.46 0.00 42.41 2.24
2023 2065 5.943349 TCATTTCCAACCGGATCTAAGTA 57.057 39.130 9.46 0.00 42.41 2.24
2024 2066 6.302535 TCATTTCCAACCGGATCTAAGTAA 57.697 37.500 9.46 0.00 42.41 2.24
2028 2070 7.427989 TTTCCAACCGGATCTAAGTAATAGT 57.572 36.000 9.46 0.00 42.41 2.12
2062 2107 5.302823 AGAGAATGCAAAAGGTAGCAAAGTT 59.697 36.000 0.00 0.00 44.88 2.66
2130 2187 0.385598 GCTTTTCGGGAAACAGTCGC 60.386 55.000 0.00 0.00 35.85 5.19
2156 2219 9.661563 CGCATTATCAAGTAGGGGTTTATATTA 57.338 33.333 0.00 0.00 0.00 0.98
2194 2257 2.162681 GACACTTGGAATTGAGGTGGG 58.837 52.381 0.00 0.00 32.88 4.61
2202 2265 0.409092 AATTGAGGTGGGCATGGTCA 59.591 50.000 0.00 0.00 0.00 4.02
2280 2343 3.376546 GCACCTCTTGATCTGGAAATGAC 59.623 47.826 0.00 0.00 0.00 3.06
2294 2357 2.270297 AATGACGAGGCGCCATTTGC 62.270 55.000 31.54 14.15 36.64 3.68
2317 2380 0.393537 GTGCAACTGGGCTCAGCTAT 60.394 55.000 15.27 0.00 44.59 2.97
2350 2413 2.719556 CGGATATCAGTTTCGTGCTACG 59.280 50.000 4.83 2.79 44.19 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.603707 ACATGGAGTGCGTGTTGGAG 60.604 55.000 3.27 0.00 0.00 3.86
5 6 2.760634 TGATACATGGAGTGCGTGTT 57.239 45.000 15.14 3.35 0.00 3.32
6 7 2.988010 ATGATACATGGAGTGCGTGT 57.012 45.000 14.35 14.35 0.00 4.49
7 8 4.389992 GGATTATGATACATGGAGTGCGTG 59.610 45.833 1.76 1.76 0.00 5.34
8 9 4.569943 GGATTATGATACATGGAGTGCGT 58.430 43.478 0.00 0.00 0.00 5.24
9 10 3.614176 CGGATTATGATACATGGAGTGCG 59.386 47.826 0.00 0.00 0.00 5.34
12 13 5.280011 GGGTTCGGATTATGATACATGGAGT 60.280 44.000 0.00 0.00 0.00 3.85
13 14 5.178797 GGGTTCGGATTATGATACATGGAG 58.821 45.833 0.00 0.00 0.00 3.86
14 15 4.322424 CGGGTTCGGATTATGATACATGGA 60.322 45.833 0.00 0.00 0.00 3.41
15 16 3.932710 CGGGTTCGGATTATGATACATGG 59.067 47.826 0.00 0.00 0.00 3.66
16 17 3.370978 GCGGGTTCGGATTATGATACATG 59.629 47.826 0.00 0.00 36.79 3.21
17 18 3.596214 GCGGGTTCGGATTATGATACAT 58.404 45.455 0.00 0.00 36.79 2.29
18 19 2.289195 GGCGGGTTCGGATTATGATACA 60.289 50.000 0.00 0.00 36.79 2.29
19 20 2.344025 GGCGGGTTCGGATTATGATAC 58.656 52.381 0.00 0.00 36.79 2.24
20 21 1.276989 GGGCGGGTTCGGATTATGATA 59.723 52.381 0.00 0.00 36.79 2.15
21 22 0.036306 GGGCGGGTTCGGATTATGAT 59.964 55.000 0.00 0.00 36.79 2.45
22 23 1.338890 TGGGCGGGTTCGGATTATGA 61.339 55.000 0.00 0.00 36.79 2.15
23 24 0.464735 TTGGGCGGGTTCGGATTATG 60.465 55.000 0.00 0.00 36.79 1.90
24 25 0.464916 GTTGGGCGGGTTCGGATTAT 60.465 55.000 0.00 0.00 36.79 1.28
25 26 1.078285 GTTGGGCGGGTTCGGATTA 60.078 57.895 0.00 0.00 36.79 1.75
26 27 2.360726 GTTGGGCGGGTTCGGATT 60.361 61.111 0.00 0.00 36.79 3.01
27 28 4.419921 GGTTGGGCGGGTTCGGAT 62.420 66.667 0.00 0.00 36.79 4.18
30 31 4.939368 TGTGGTTGGGCGGGTTCG 62.939 66.667 0.00 0.00 39.81 3.95
31 32 2.519780 TTGTGGTTGGGCGGGTTC 60.520 61.111 0.00 0.00 0.00 3.62
32 33 2.520741 CTTGTGGTTGGGCGGGTT 60.521 61.111 0.00 0.00 0.00 4.11
33 34 4.596585 CCTTGTGGTTGGGCGGGT 62.597 66.667 0.00 0.00 0.00 5.28
34 35 4.596585 ACCTTGTGGTTGGGCGGG 62.597 66.667 0.00 0.00 46.05 6.13
42 43 3.332623 AGTCGTCGACTAACCTTGTGGT 61.333 50.000 25.94 0.00 41.51 4.16
43 44 1.268899 AGTCGTCGACTAACCTTGTGG 59.731 52.381 25.94 0.00 41.51 4.17
44 45 2.031420 TGAGTCGTCGACTAACCTTGTG 60.031 50.000 27.03 0.00 43.53 3.33
45 46 2.224606 TGAGTCGTCGACTAACCTTGT 58.775 47.619 27.03 3.43 43.53 3.16
46 47 2.483106 TCTGAGTCGTCGACTAACCTTG 59.517 50.000 27.03 8.94 43.53 3.61
47 48 2.483491 GTCTGAGTCGTCGACTAACCTT 59.517 50.000 27.03 5.00 43.53 3.50
48 49 2.075338 GTCTGAGTCGTCGACTAACCT 58.925 52.381 27.03 5.79 43.53 3.50
49 50 1.130186 GGTCTGAGTCGTCGACTAACC 59.870 57.143 27.03 26.30 43.53 2.85
50 51 1.201899 CGGTCTGAGTCGTCGACTAAC 60.202 57.143 27.03 22.38 43.53 2.34
51 52 1.073964 CGGTCTGAGTCGTCGACTAA 58.926 55.000 27.03 19.49 43.53 2.24
52 53 0.037882 ACGGTCTGAGTCGTCGACTA 60.038 55.000 27.03 10.03 43.53 2.59
53 54 1.301558 ACGGTCTGAGTCGTCGACT 60.302 57.895 27.28 27.28 46.42 4.18
54 55 1.154450 CACGGTCTGAGTCGTCGAC 60.154 63.158 17.70 17.70 37.53 4.20
55 56 2.962827 GCACGGTCTGAGTCGTCGA 61.963 63.158 0.00 0.00 37.53 4.20
56 57 2.502080 GCACGGTCTGAGTCGTCG 60.502 66.667 3.47 0.00 37.53 5.12
57 58 2.126424 GGCACGGTCTGAGTCGTC 60.126 66.667 3.47 0.82 37.53 4.20
58 59 2.910479 TGGCACGGTCTGAGTCGT 60.910 61.111 0.93 0.93 40.49 4.34
59 60 2.126307 CTGGCACGGTCTGAGTCG 60.126 66.667 0.00 0.00 0.00 4.18
60 61 2.262915 CCTGGCACGGTCTGAGTC 59.737 66.667 0.00 0.00 0.00 3.36
61 62 2.524394 ACCTGGCACGGTCTGAGT 60.524 61.111 0.00 0.00 30.10 3.41
62 63 2.047844 CACCTGGCACGGTCTGAG 60.048 66.667 5.76 0.00 33.40 3.35
63 64 4.314440 GCACCTGGCACGGTCTGA 62.314 66.667 5.76 0.00 43.97 3.27
68 69 3.989698 CTACTCGCACCTGGCACGG 62.990 68.421 8.81 2.01 45.17 4.94
69 70 1.929806 TACTACTCGCACCTGGCACG 61.930 60.000 2.77 2.77 45.17 5.34
70 71 0.245539 TTACTACTCGCACCTGGCAC 59.754 55.000 0.00 0.00 45.17 5.01
71 72 1.191535 ATTACTACTCGCACCTGGCA 58.808 50.000 0.00 0.00 45.17 4.92
72 73 2.361438 AGTATTACTACTCGCACCTGGC 59.639 50.000 0.00 0.00 32.56 4.85
73 74 4.226113 GAGTATTACTACTCGCACCTGG 57.774 50.000 4.67 0.00 43.25 4.45
82 83 4.079558 TGGAACGGAGGGAGTATTACTACT 60.080 45.833 6.03 3.50 40.98 2.57
83 84 4.210331 TGGAACGGAGGGAGTATTACTAC 58.790 47.826 0.00 0.00 0.00 2.73
84 85 4.524802 TGGAACGGAGGGAGTATTACTA 57.475 45.455 0.00 0.00 0.00 1.82
85 86 3.393426 TGGAACGGAGGGAGTATTACT 57.607 47.619 0.00 0.00 0.00 2.24
86 87 4.476628 TTTGGAACGGAGGGAGTATTAC 57.523 45.455 0.00 0.00 0.00 1.89
87 88 5.703730 ATTTTGGAACGGAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
88 89 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
89 90 5.906772 ATATTTTGGAACGGAGGGAGTAT 57.093 39.130 0.00 0.00 0.00 2.12
90 91 5.221581 GCTATATTTTGGAACGGAGGGAGTA 60.222 44.000 0.00 0.00 0.00 2.59
91 92 4.444449 GCTATATTTTGGAACGGAGGGAGT 60.444 45.833 0.00 0.00 0.00 3.85
92 93 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
93 94 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
94 95 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30
95 96 2.223377 GCGCTATATTTTGGAACGGAGG 59.777 50.000 0.00 0.00 0.00 4.30
96 97 2.096909 CGCGCTATATTTTGGAACGGAG 60.097 50.000 5.56 0.00 0.00 4.63
97 98 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
98 99 1.595794 ACGCGCTATATTTTGGAACGG 59.404 47.619 5.73 0.00 0.00 4.44
99 100 2.348218 GGACGCGCTATATTTTGGAACG 60.348 50.000 5.73 0.00 0.00 3.95
100 101 2.870411 AGGACGCGCTATATTTTGGAAC 59.130 45.455 5.73 0.00 0.00 3.62
101 102 3.128349 GAGGACGCGCTATATTTTGGAA 58.872 45.455 5.73 0.00 0.00 3.53
102 103 2.750948 GAGGACGCGCTATATTTTGGA 58.249 47.619 5.73 0.00 0.00 3.53
103 104 1.455786 CGAGGACGCGCTATATTTTGG 59.544 52.381 5.73 0.00 0.00 3.28
104 105 1.455786 CCGAGGACGCGCTATATTTTG 59.544 52.381 5.73 0.00 38.29 2.44
105 106 1.068127 ACCGAGGACGCGCTATATTTT 59.932 47.619 5.73 0.00 38.29 1.82
106 107 0.672342 ACCGAGGACGCGCTATATTT 59.328 50.000 5.73 0.00 38.29 1.40
107 108 0.672342 AACCGAGGACGCGCTATATT 59.328 50.000 5.73 0.00 38.29 1.28
108 109 0.672342 AAACCGAGGACGCGCTATAT 59.328 50.000 5.73 0.00 38.29 0.86
109 110 0.457035 AAAACCGAGGACGCGCTATA 59.543 50.000 5.73 0.00 38.29 1.31
110 111 0.804933 GAAAACCGAGGACGCGCTAT 60.805 55.000 5.73 0.00 38.29 2.97
111 112 1.444895 GAAAACCGAGGACGCGCTA 60.445 57.895 5.73 0.00 38.29 4.26
112 113 2.737376 GAAAACCGAGGACGCGCT 60.737 61.111 5.73 0.00 38.29 5.92
113 114 4.130281 CGAAAACCGAGGACGCGC 62.130 66.667 5.73 0.00 41.76 6.86
114 115 2.732094 ACGAAAACCGAGGACGCG 60.732 61.111 3.53 3.53 41.76 6.01
115 116 2.851104 CACGAAAACCGAGGACGC 59.149 61.111 0.00 0.00 41.76 5.19
116 117 1.219522 AAGCACGAAAACCGAGGACG 61.220 55.000 0.00 0.00 41.76 4.79
117 118 0.511653 GAAGCACGAAAACCGAGGAC 59.488 55.000 0.00 0.00 41.76 3.85
118 119 0.105224 TGAAGCACGAAAACCGAGGA 59.895 50.000 0.00 0.00 41.76 3.71
119 120 0.941542 TTGAAGCACGAAAACCGAGG 59.058 50.000 0.00 0.00 41.76 4.63
120 121 1.597663 AGTTGAAGCACGAAAACCGAG 59.402 47.619 0.00 0.00 41.76 4.63
121 122 1.658994 AGTTGAAGCACGAAAACCGA 58.341 45.000 0.00 0.00 41.76 4.69
122 123 2.468532 AAGTTGAAGCACGAAAACCG 57.531 45.000 0.00 0.00 45.44 4.44
123 124 3.546271 GTCAAAGTTGAAGCACGAAAACC 59.454 43.478 0.00 0.00 39.21 3.27
124 125 3.546271 GGTCAAAGTTGAAGCACGAAAAC 59.454 43.478 0.00 0.00 39.21 2.43
125 126 3.191581 TGGTCAAAGTTGAAGCACGAAAA 59.808 39.130 0.00 0.00 39.21 2.29
126 127 2.750166 TGGTCAAAGTTGAAGCACGAAA 59.250 40.909 0.00 0.00 39.21 3.46
127 128 2.360844 TGGTCAAAGTTGAAGCACGAA 58.639 42.857 0.00 0.00 39.21 3.85
128 129 2.031258 TGGTCAAAGTTGAAGCACGA 57.969 45.000 0.00 0.00 39.21 4.35
129 130 3.354089 AATGGTCAAAGTTGAAGCACG 57.646 42.857 0.00 0.00 39.21 5.34
130 131 7.713764 AAATTAATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
131 132 9.995003 ATTAAATTAATGGTCAAAGTTGAAGCA 57.005 25.926 0.00 0.00 39.21 3.91
141 142 9.921637 GGTCTTGTTGATTAAATTAATGGTCAA 57.078 29.630 2.58 0.04 0.00 3.18
142 143 8.240682 CGGTCTTGTTGATTAAATTAATGGTCA 58.759 33.333 2.58 0.00 0.00 4.02
143 144 8.455682 TCGGTCTTGTTGATTAAATTAATGGTC 58.544 33.333 2.58 0.00 0.00 4.02
144 145 8.241367 GTCGGTCTTGTTGATTAAATTAATGGT 58.759 33.333 2.58 0.00 0.00 3.55
145 146 8.458843 AGTCGGTCTTGTTGATTAAATTAATGG 58.541 33.333 2.58 0.00 0.00 3.16
146 147 9.277565 CAGTCGGTCTTGTTGATTAAATTAATG 57.722 33.333 2.58 0.00 0.00 1.90
147 148 7.968405 GCAGTCGGTCTTGTTGATTAAATTAAT 59.032 33.333 0.00 0.00 0.00 1.40
148 149 7.302524 GCAGTCGGTCTTGTTGATTAAATTAA 58.697 34.615 0.00 0.00 0.00 1.40
149 150 6.401688 CGCAGTCGGTCTTGTTGATTAAATTA 60.402 38.462 0.00 0.00 0.00 1.40
150 151 5.616866 CGCAGTCGGTCTTGTTGATTAAATT 60.617 40.000 0.00 0.00 0.00 1.82
151 152 4.142902 CGCAGTCGGTCTTGTTGATTAAAT 60.143 41.667 0.00 0.00 0.00 1.40
152 153 3.185594 CGCAGTCGGTCTTGTTGATTAAA 59.814 43.478 0.00 0.00 0.00 1.52
153 154 2.734606 CGCAGTCGGTCTTGTTGATTAA 59.265 45.455 0.00 0.00 0.00 1.40
154 155 2.333926 CGCAGTCGGTCTTGTTGATTA 58.666 47.619 0.00 0.00 0.00 1.75
155 156 1.148310 CGCAGTCGGTCTTGTTGATT 58.852 50.000 0.00 0.00 0.00 2.57
156 157 2.827604 CGCAGTCGGTCTTGTTGAT 58.172 52.632 0.00 0.00 0.00 2.57
157 158 4.336581 CGCAGTCGGTCTTGTTGA 57.663 55.556 0.00 0.00 0.00 3.18
223 224 8.865090 TGCGGTGGGATCAAAAATTATATAATT 58.135 29.630 13.85 13.85 37.49 1.40
224 225 8.415950 TGCGGTGGGATCAAAAATTATATAAT 57.584 30.769 1.91 1.91 0.00 1.28
225 226 7.504238 ACTGCGGTGGGATCAAAAATTATATAA 59.496 33.333 0.00 0.00 0.00 0.98
226 227 7.001674 ACTGCGGTGGGATCAAAAATTATATA 58.998 34.615 0.00 0.00 0.00 0.86
227 228 5.833131 ACTGCGGTGGGATCAAAAATTATAT 59.167 36.000 0.00 0.00 0.00 0.86
228 229 5.197451 ACTGCGGTGGGATCAAAAATTATA 58.803 37.500 0.00 0.00 0.00 0.98
229 230 4.023291 ACTGCGGTGGGATCAAAAATTAT 58.977 39.130 0.00 0.00 0.00 1.28
230 231 3.426615 ACTGCGGTGGGATCAAAAATTA 58.573 40.909 0.00 0.00 0.00 1.40
231 232 2.231235 GACTGCGGTGGGATCAAAAATT 59.769 45.455 0.80 0.00 0.00 1.82
232 233 1.818674 GACTGCGGTGGGATCAAAAAT 59.181 47.619 0.80 0.00 0.00 1.82
233 234 1.243902 GACTGCGGTGGGATCAAAAA 58.756 50.000 0.80 0.00 0.00 1.94
234 235 0.953471 CGACTGCGGTGGGATCAAAA 60.953 55.000 0.80 0.00 0.00 2.44
235 236 1.375396 CGACTGCGGTGGGATCAAA 60.375 57.895 0.80 0.00 0.00 2.69
236 237 2.264480 CGACTGCGGTGGGATCAA 59.736 61.111 0.80 0.00 0.00 2.57
246 247 4.778415 CCCACGAGACCGACTGCG 62.778 72.222 0.00 0.00 39.50 5.18
247 248 1.870055 TAACCCACGAGACCGACTGC 61.870 60.000 0.00 0.00 39.50 4.40
248 249 0.599558 TTAACCCACGAGACCGACTG 59.400 55.000 0.00 0.00 39.50 3.51
249 250 1.331214 TTTAACCCACGAGACCGACT 58.669 50.000 0.00 0.00 39.50 4.18
250 251 2.375173 ATTTAACCCACGAGACCGAC 57.625 50.000 0.00 0.00 39.50 4.79
251 252 3.405823 AAATTTAACCCACGAGACCGA 57.594 42.857 0.00 0.00 39.50 4.69
252 253 4.034742 CCATAAATTTAACCCACGAGACCG 59.965 45.833 1.21 0.00 42.50 4.79
253 254 4.945543 ACCATAAATTTAACCCACGAGACC 59.054 41.667 1.21 0.00 0.00 3.85
254 255 5.644636 TGACCATAAATTTAACCCACGAGAC 59.355 40.000 1.21 0.00 0.00 3.36
255 256 5.806818 TGACCATAAATTTAACCCACGAGA 58.193 37.500 1.21 0.00 0.00 4.04
256 257 6.503589 TTGACCATAAATTTAACCCACGAG 57.496 37.500 1.21 0.00 0.00 4.18
257 258 6.490721 ACTTTGACCATAAATTTAACCCACGA 59.509 34.615 1.21 0.00 0.00 4.35
258 259 6.683715 ACTTTGACCATAAATTTAACCCACG 58.316 36.000 1.21 0.00 0.00 4.94
259 260 8.145122 TCAACTTTGACCATAAATTTAACCCAC 58.855 33.333 1.21 0.00 31.01 4.61
260 261 8.251383 TCAACTTTGACCATAAATTTAACCCA 57.749 30.769 1.21 0.00 31.01 4.51
261 262 8.984764 GTTCAACTTTGACCATAAATTTAACCC 58.015 33.333 1.21 0.00 36.83 4.11
262 263 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
263 264 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
264 265 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
265 266 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
266 267 7.013846 TCGAGGTTCAACTTTGACCATAAATTT 59.986 33.333 0.00 0.00 36.83 1.82
267 268 6.488683 TCGAGGTTCAACTTTGACCATAAATT 59.511 34.615 11.01 0.00 36.83 1.82
268 269 6.001460 TCGAGGTTCAACTTTGACCATAAAT 58.999 36.000 11.01 0.00 36.83 1.40
269 270 5.369833 TCGAGGTTCAACTTTGACCATAAA 58.630 37.500 11.01 0.00 36.83 1.40
270 271 4.963373 TCGAGGTTCAACTTTGACCATAA 58.037 39.130 11.01 0.00 36.83 1.90
271 272 4.610605 TCGAGGTTCAACTTTGACCATA 57.389 40.909 11.01 0.00 36.83 2.74
272 273 3.485463 TCGAGGTTCAACTTTGACCAT 57.515 42.857 11.01 0.00 36.83 3.55
273 274 2.992124 TCGAGGTTCAACTTTGACCA 57.008 45.000 11.01 0.00 36.83 4.02
274 275 4.537015 CATTTCGAGGTTCAACTTTGACC 58.463 43.478 0.00 0.00 36.83 4.02
275 276 3.975035 GCATTTCGAGGTTCAACTTTGAC 59.025 43.478 0.00 0.00 36.83 3.18
276 277 3.303725 CGCATTTCGAGGTTCAACTTTGA 60.304 43.478 0.00 0.00 41.67 2.69
277 278 2.973224 CGCATTTCGAGGTTCAACTTTG 59.027 45.455 0.00 0.00 41.67 2.77
278 279 2.616842 ACGCATTTCGAGGTTCAACTTT 59.383 40.909 0.00 0.00 41.67 2.66
279 280 2.032030 CACGCATTTCGAGGTTCAACTT 60.032 45.455 0.00 0.00 41.67 2.66
280 281 1.531149 CACGCATTTCGAGGTTCAACT 59.469 47.619 0.00 0.00 41.67 3.16
281 282 1.399727 CCACGCATTTCGAGGTTCAAC 60.400 52.381 0.00 0.00 42.79 3.18
282 283 0.871722 CCACGCATTTCGAGGTTCAA 59.128 50.000 0.00 0.00 42.79 2.69
283 284 0.953471 CCCACGCATTTCGAGGTTCA 60.953 55.000 0.71 0.00 45.67 3.18
284 285 1.794222 CCCACGCATTTCGAGGTTC 59.206 57.895 0.71 0.00 45.67 3.62
285 286 2.332654 GCCCACGCATTTCGAGGTT 61.333 57.895 0.71 0.00 45.67 3.50
286 287 2.746277 GCCCACGCATTTCGAGGT 60.746 61.111 0.71 0.00 45.67 3.85
287 288 3.864686 CGCCCACGCATTTCGAGG 61.865 66.667 0.00 0.00 46.50 4.63
297 298 0.384230 CAAAATATAGCGCGCCCACG 60.384 55.000 30.33 4.40 44.07 4.94
298 299 0.040425 CCAAAATATAGCGCGCCCAC 60.040 55.000 30.33 0.00 0.00 4.61
299 300 0.179043 TCCAAAATATAGCGCGCCCA 60.179 50.000 30.33 17.44 0.00 5.36
300 301 0.948678 TTCCAAAATATAGCGCGCCC 59.051 50.000 30.33 0.16 0.00 6.13
301 302 1.659211 CGTTCCAAAATATAGCGCGCC 60.659 52.381 30.33 10.31 0.00 6.53
302 303 1.658968 CGTTCCAAAATATAGCGCGC 58.341 50.000 26.66 26.66 0.00 6.86
303 304 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
304 305 2.223377 CCTCCGTTCCAAAATATAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
305 306 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
306 307 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
307 308 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
308 309 8.495160 TTATACTCCCTCCGTTCCAAAATATA 57.505 34.615 0.00 0.00 0.00 0.86
309 310 5.906772 ATACTCCCTCCGTTCCAAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
310 311 6.811634 TTATACTCCCTCCGTTCCAAAATA 57.188 37.500 0.00 0.00 0.00 1.40
311 312 5.703730 TTATACTCCCTCCGTTCCAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
312 313 5.190132 TGATTATACTCCCTCCGTTCCAAAA 59.810 40.000 0.00 0.00 0.00 2.44
313 314 4.717778 TGATTATACTCCCTCCGTTCCAAA 59.282 41.667 0.00 0.00 0.00 3.28
314 315 4.100498 GTGATTATACTCCCTCCGTTCCAA 59.900 45.833 0.00 0.00 0.00 3.53
315 316 3.640029 GTGATTATACTCCCTCCGTTCCA 59.360 47.826 0.00 0.00 0.00 3.53
316 317 3.006644 GGTGATTATACTCCCTCCGTTCC 59.993 52.174 0.00 0.00 0.00 3.62
317 318 3.305199 CGGTGATTATACTCCCTCCGTTC 60.305 52.174 0.00 0.00 33.39 3.95
318 319 2.626743 CGGTGATTATACTCCCTCCGTT 59.373 50.000 0.00 0.00 33.39 4.44
319 320 2.236766 CGGTGATTATACTCCCTCCGT 58.763 52.381 0.00 0.00 33.39 4.69
320 321 1.544691 CCGGTGATTATACTCCCTCCG 59.455 57.143 0.00 9.68 37.04 4.63
321 322 2.561858 GACCGGTGATTATACTCCCTCC 59.438 54.545 14.63 0.00 0.00 4.30
322 323 2.561858 GGACCGGTGATTATACTCCCTC 59.438 54.545 14.63 0.00 0.00 4.30
323 324 2.090943 TGGACCGGTGATTATACTCCCT 60.091 50.000 14.63 0.00 0.00 4.20
324 325 2.299297 CTGGACCGGTGATTATACTCCC 59.701 54.545 14.63 2.60 0.00 4.30
325 326 2.288886 GCTGGACCGGTGATTATACTCC 60.289 54.545 14.63 3.51 0.00 3.85
326 327 2.628657 AGCTGGACCGGTGATTATACTC 59.371 50.000 14.63 0.00 0.00 2.59
327 328 2.628657 GAGCTGGACCGGTGATTATACT 59.371 50.000 14.63 0.00 0.00 2.12
328 329 2.628657 AGAGCTGGACCGGTGATTATAC 59.371 50.000 14.63 0.00 0.00 1.47
329 330 2.958818 AGAGCTGGACCGGTGATTATA 58.041 47.619 14.63 0.00 0.00 0.98
358 359 0.036952 ACGAGGACAATCAGTGGCTG 60.037 55.000 0.00 0.00 34.56 4.85
359 360 0.247736 GACGAGGACAATCAGTGGCT 59.752 55.000 0.00 0.00 34.56 4.75
360 361 0.741221 GGACGAGGACAATCAGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
361 362 0.898320 AGGACGAGGACAATCAGTGG 59.102 55.000 0.00 0.00 0.00 4.00
362 363 2.029020 TCAAGGACGAGGACAATCAGTG 60.029 50.000 0.00 0.00 0.00 3.66
363 364 2.232452 CTCAAGGACGAGGACAATCAGT 59.768 50.000 0.00 0.00 0.00 3.41
364 365 2.886081 CTCAAGGACGAGGACAATCAG 58.114 52.381 0.00 0.00 0.00 2.90
377 378 0.319900 GCGTTCTGACTGCTCAAGGA 60.320 55.000 0.00 0.00 0.00 3.36
426 428 1.693083 GCATGTAGGTTCCGACGCAC 61.693 60.000 0.00 0.00 0.00 5.34
482 484 0.553819 TAAACAAGGGTGCAGGTGGT 59.446 50.000 0.00 0.00 0.00 4.16
510 512 0.523072 GTTGACAATGGCGCAGTGAT 59.477 50.000 10.83 0.00 33.46 3.06
511 513 0.534877 AGTTGACAATGGCGCAGTGA 60.535 50.000 10.83 0.00 33.46 3.41
512 514 0.311790 AAGTTGACAATGGCGCAGTG 59.688 50.000 10.83 7.77 35.46 3.66
513 515 0.311790 CAAGTTGACAATGGCGCAGT 59.688 50.000 10.83 0.91 0.00 4.40
514 516 1.005294 GCAAGTTGACAATGGCGCAG 61.005 55.000 10.83 0.00 0.00 5.18
515 517 1.007502 GCAAGTTGACAATGGCGCA 60.008 52.632 10.83 0.00 0.00 6.09
516 518 1.005294 CTGCAAGTTGACAATGGCGC 61.005 55.000 7.16 0.00 0.00 6.53
517 519 3.096541 CTGCAAGTTGACAATGGCG 57.903 52.632 7.16 0.00 0.00 5.69
577 593 0.667792 GACTCGTTCACCACCTGCTC 60.668 60.000 0.00 0.00 0.00 4.26
581 597 0.314302 CTTCGACTCGTTCACCACCT 59.686 55.000 0.00 0.00 0.00 4.00
650 666 1.570979 TCCAGATACAGAGGCTGAGGA 59.429 52.381 0.00 0.00 35.18 3.71
653 669 4.020751 GCATTATCCAGATACAGAGGCTGA 60.021 45.833 0.00 0.00 35.18 4.26
655 671 3.906218 TGCATTATCCAGATACAGAGGCT 59.094 43.478 0.00 0.00 0.00 4.58
663 679 5.480422 AGTGACCGTATGCATTATCCAGATA 59.520 40.000 3.54 0.00 0.00 1.98
759 775 3.308976 GGGGGTAGGAATAGCGAGAGATA 60.309 52.174 0.00 0.00 35.88 1.98
764 780 1.344763 CAAGGGGGTAGGAATAGCGAG 59.655 57.143 0.00 0.00 0.00 5.03
771 787 0.918983 CTGCATCAAGGGGGTAGGAA 59.081 55.000 0.00 0.00 0.00 3.36
902 918 2.986413 AGTCTCGGTGAGTGCGCT 60.986 61.111 9.73 0.00 0.00 5.92
917 933 1.003233 GGAAGAAGAAGGCGGCAGT 60.003 57.895 13.08 0.00 0.00 4.40
926 942 3.107601 AGATGGATCGGTGGAAGAAGAA 58.892 45.455 0.00 0.00 0.00 2.52
927 943 2.695666 GAGATGGATCGGTGGAAGAAGA 59.304 50.000 0.00 0.00 0.00 2.87
1050 1067 2.819667 GCAGCTGCATATCGACGAT 58.180 52.632 33.36 15.74 41.59 3.73
1168 1185 2.307768 GGAGAGATGTCGTGGATGGTA 58.692 52.381 0.00 0.00 0.00 3.25
1178 1195 0.461961 CTGTTCGGGGGAGAGATGTC 59.538 60.000 0.00 0.00 0.00 3.06
1228 1245 2.408022 GTCCTGCGCGTCGTATCT 59.592 61.111 8.43 0.00 0.00 1.98
1310 1328 3.049080 GCAAAGCCGAGATCCCCCT 62.049 63.158 0.00 0.00 0.00 4.79
1326 1344 0.474854 TGTTACCCTTCCTGGAGGCA 60.475 55.000 0.00 0.00 38.35 4.75
1529 1565 3.136009 TGGATTCGGCGTCTAGAGATA 57.864 47.619 6.85 0.00 0.00 1.98
1535 1571 0.742505 ATCGTTGGATTCGGCGTCTA 59.257 50.000 6.85 0.00 0.00 2.59
1685 1722 2.108157 GTGGCGACCTGTGTGTCA 59.892 61.111 0.00 0.00 34.88 3.58
1721 1758 2.758737 GACGGGTCTCCCATCGGT 60.759 66.667 5.64 0.00 45.83 4.69
1774 1811 1.758514 GGACAGCGGGATCCAGAGA 60.759 63.158 16.86 0.00 34.87 3.10
1863 1900 4.508128 CGCCACCGTCCATAGCGT 62.508 66.667 0.00 0.00 41.78 5.07
1888 1925 3.433598 CCTCGAGTCTCATCTTCCTCTCT 60.434 52.174 12.31 0.00 0.00 3.10
1896 1935 0.396417 CCACCCCTCGAGTCTCATCT 60.396 60.000 12.31 0.00 0.00 2.90
1966 2008 1.269723 TCAGTCGCGTGTTTCTCTCAT 59.730 47.619 5.77 0.00 0.00 2.90
1967 2009 0.666374 TCAGTCGCGTGTTTCTCTCA 59.334 50.000 5.77 0.00 0.00 3.27
1968 2010 1.332178 CTCAGTCGCGTGTTTCTCTC 58.668 55.000 5.77 0.00 0.00 3.20
1969 2011 0.669077 ACTCAGTCGCGTGTTTCTCT 59.331 50.000 5.77 0.00 0.00 3.10
1970 2012 0.778815 CACTCAGTCGCGTGTTTCTC 59.221 55.000 5.77 0.00 0.00 2.87
1971 2013 0.597637 CCACTCAGTCGCGTGTTTCT 60.598 55.000 5.77 0.00 0.00 2.52
1972 2014 0.596600 TCCACTCAGTCGCGTGTTTC 60.597 55.000 5.77 0.00 0.00 2.78
1973 2015 0.179094 TTCCACTCAGTCGCGTGTTT 60.179 50.000 5.77 0.00 0.00 2.83
1974 2016 0.179094 TTTCCACTCAGTCGCGTGTT 60.179 50.000 5.77 0.00 0.00 3.32
1975 2017 0.179094 TTTTCCACTCAGTCGCGTGT 60.179 50.000 5.77 0.00 0.00 4.49
1976 2018 0.934496 TTTTTCCACTCAGTCGCGTG 59.066 50.000 5.77 0.00 0.00 5.34
1977 2019 1.798813 GATTTTTCCACTCAGTCGCGT 59.201 47.619 5.77 0.00 0.00 6.01
1978 2020 2.069273 AGATTTTTCCACTCAGTCGCG 58.931 47.619 0.00 0.00 0.00 5.87
1979 2021 4.489679 AAAGATTTTTCCACTCAGTCGC 57.510 40.909 0.00 0.00 0.00 5.19
1980 2022 6.060028 TGAAAAGATTTTTCCACTCAGTCG 57.940 37.500 10.72 0.00 0.00 4.18
1981 2023 8.877808 AAATGAAAAGATTTTTCCACTCAGTC 57.122 30.769 10.72 0.00 0.00 3.51
1982 2024 7.928167 GGAAATGAAAAGATTTTTCCACTCAGT 59.072 33.333 10.72 0.00 44.19 3.41
1983 2025 8.302965 GGAAATGAAAAGATTTTTCCACTCAG 57.697 34.615 10.72 0.00 44.19 3.35
1989 2031 6.073276 CCGGTTGGAAATGAAAAGATTTTTCC 60.073 38.462 10.72 6.38 44.74 3.13
1990 2032 6.704050 TCCGGTTGGAAATGAAAAGATTTTTC 59.296 34.615 0.00 7.21 42.85 2.29
1991 2033 6.587273 TCCGGTTGGAAATGAAAAGATTTTT 58.413 32.000 0.00 0.00 42.85 1.94
1992 2034 6.168270 TCCGGTTGGAAATGAAAAGATTTT 57.832 33.333 0.00 0.00 42.85 1.82
1993 2035 5.799827 TCCGGTTGGAAATGAAAAGATTT 57.200 34.783 0.00 0.00 42.85 2.17
2028 2070 8.591114 ACCTTTTGCATTCTCTACTAGTACTA 57.409 34.615 1.89 1.89 0.00 1.82
2035 2077 5.165961 TGCTACCTTTTGCATTCTCTACT 57.834 39.130 0.00 0.00 33.94 2.57
2062 2107 6.152661 CAGGCAAGAAATAGTAACCCAAATGA 59.847 38.462 0.00 0.00 0.00 2.57
2130 2187 8.561738 AATATAAACCCCTACTTGATAATGCG 57.438 34.615 0.00 0.00 0.00 4.73
2156 2219 1.455587 CAGCAACCACCACCCAACT 60.456 57.895 0.00 0.00 0.00 3.16
2194 2257 2.258286 GCAAACCGGTGACCATGC 59.742 61.111 8.52 10.83 0.00 4.06
2294 2357 1.446907 CTGAGCCCAGTTGCACTAAG 58.553 55.000 0.00 0.00 35.70 2.18
2317 2380 7.412563 CGAAACTGATATCCGAAGCTACAAAAA 60.413 37.037 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.