Multiple sequence alignment - TraesCS1B01G309500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G309500 chr1B 100.000 2222 0 0 1 2222 532234626 532236847 0.000000e+00 4104.0
1 TraesCS1B01G309500 chr1B 87.500 488 53 4 4 491 610433137 610432658 6.930000e-155 556.0
2 TraesCS1B01G309500 chr4D 93.652 1717 106 2 507 2222 311190688 311188974 0.000000e+00 2564.0
3 TraesCS1B01G309500 chr6A 90.104 1728 150 15 497 2221 320299159 320300868 0.000000e+00 2224.0
4 TraesCS1B01G309500 chr6A 89.345 1436 137 7 498 1922 43117935 43119365 0.000000e+00 1790.0
5 TraesCS1B01G309500 chr6A 88.293 1435 145 6 498 1922 43102985 43104406 0.000000e+00 1698.0
6 TraesCS1B01G309500 chr4A 88.767 1727 143 17 497 2222 67745206 67743530 0.000000e+00 2067.0
7 TraesCS1B01G309500 chr4A 79.661 118 18 6 497 612 443845966 443845853 1.830000e-11 80.5
8 TraesCS1B01G309500 chr3A 93.806 1114 59 6 1117 2222 143700522 143699411 0.000000e+00 1666.0
9 TraesCS1B01G309500 chr3A 86.458 1536 130 25 727 2199 740888183 740886663 0.000000e+00 1613.0
10 TraesCS1B01G309500 chr3A 86.957 161 10 6 697 857 143700837 143700688 1.060000e-38 171.0
11 TraesCS1B01G309500 chr3D 86.254 1535 134 36 727 2199 608401219 608402738 0.000000e+00 1594.0
12 TraesCS1B01G309500 chr3B 85.983 1541 132 31 727 2199 818277333 818275809 0.000000e+00 1572.0
13 TraesCS1B01G309500 chr3B 86.789 492 56 6 4 491 721645392 721645878 6.980000e-150 540.0
14 TraesCS1B01G309500 chrUn 87.995 833 82 7 714 1531 325727617 325728446 0.000000e+00 968.0
15 TraesCS1B01G309500 chr2B 88.486 799 86 5 713 1509 175745664 175746458 0.000000e+00 961.0
16 TraesCS1B01G309500 chr7B 87.910 488 52 3 4 491 342446830 342446350 3.200000e-158 568.0
17 TraesCS1B01G309500 chr7B 87.730 489 54 5 4 491 211590652 211590169 1.150000e-157 566.0
18 TraesCS1B01G309500 chr5B 86.885 488 58 4 4 491 216911266 216910785 1.940000e-150 542.0
19 TraesCS1B01G309500 chr5D 86.558 491 61 4 1 491 405182060 405182545 9.030000e-149 536.0
20 TraesCS1B01G309500 chr2D 86.410 493 53 10 4 491 200533664 200533181 5.430000e-146 527.0
21 TraesCS1B01G309500 chr6B 86.151 491 59 5 1 490 755511 755993 2.530000e-144 521.0
22 TraesCS1B01G309500 chr6B 85.976 492 61 4 1 491 383792784 383793268 9.090000e-144 520.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G309500 chr1B 532234626 532236847 2221 False 4104.0 4104 100.0000 1 2222 1 chr1B.!!$F1 2221
1 TraesCS1B01G309500 chr4D 311188974 311190688 1714 True 2564.0 2564 93.6520 507 2222 1 chr4D.!!$R1 1715
2 TraesCS1B01G309500 chr6A 320299159 320300868 1709 False 2224.0 2224 90.1040 497 2221 1 chr6A.!!$F3 1724
3 TraesCS1B01G309500 chr6A 43117935 43119365 1430 False 1790.0 1790 89.3450 498 1922 1 chr6A.!!$F2 1424
4 TraesCS1B01G309500 chr6A 43102985 43104406 1421 False 1698.0 1698 88.2930 498 1922 1 chr6A.!!$F1 1424
5 TraesCS1B01G309500 chr4A 67743530 67745206 1676 True 2067.0 2067 88.7670 497 2222 1 chr4A.!!$R1 1725
6 TraesCS1B01G309500 chr3A 740886663 740888183 1520 True 1613.0 1613 86.4580 727 2199 1 chr3A.!!$R1 1472
7 TraesCS1B01G309500 chr3A 143699411 143700837 1426 True 918.5 1666 90.3815 697 2222 2 chr3A.!!$R2 1525
8 TraesCS1B01G309500 chr3D 608401219 608402738 1519 False 1594.0 1594 86.2540 727 2199 1 chr3D.!!$F1 1472
9 TraesCS1B01G309500 chr3B 818275809 818277333 1524 True 1572.0 1572 85.9830 727 2199 1 chr3B.!!$R1 1472
10 TraesCS1B01G309500 chrUn 325727617 325728446 829 False 968.0 968 87.9950 714 1531 1 chrUn.!!$F1 817
11 TraesCS1B01G309500 chr2B 175745664 175746458 794 False 961.0 961 88.4860 713 1509 1 chr2B.!!$F1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.036875 GTCAGGAACAAGTGAGGGGG 59.963 60.0 0.00 0.0 0.0 5.40 F
343 344 0.106318 ATCTTCAATGCTCCCTGGGC 60.106 55.0 8.22 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 1206 0.260816 ACGTGGATAGGGTAGGCTGA 59.739 55.0 0.00 0.0 0.00 4.26 R
1604 1670 0.531532 CGCATCTGCTAACTCCCCTG 60.532 60.0 0.09 0.0 39.32 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.448383 AGCCCCGAGGGTGAACTA 59.552 61.111 7.48 0.00 46.51 2.24
25 26 1.988406 AGCCCCGAGGGTGAACTAC 60.988 63.158 7.48 0.00 46.51 2.73
26 27 1.988406 GCCCCGAGGGTGAACTACT 60.988 63.158 7.48 0.00 46.51 2.57
27 28 1.957765 GCCCCGAGGGTGAACTACTC 61.958 65.000 7.48 0.00 46.51 2.59
28 29 1.328430 CCCCGAGGGTGAACTACTCC 61.328 65.000 7.48 0.00 38.25 3.85
33 34 3.713867 GGGTGAACTACTCCCTCCT 57.286 57.895 0.00 0.00 45.77 3.69
34 35 1.954035 GGGTGAACTACTCCCTCCTT 58.046 55.000 0.00 0.00 45.77 3.36
35 36 3.111741 GGGTGAACTACTCCCTCCTTA 57.888 52.381 0.00 0.00 45.77 2.69
36 37 3.655384 GGGTGAACTACTCCCTCCTTAT 58.345 50.000 0.00 0.00 45.77 1.73
37 38 3.642377 GGGTGAACTACTCCCTCCTTATC 59.358 52.174 0.00 0.00 45.77 1.75
38 39 4.287552 GGTGAACTACTCCCTCCTTATCA 58.712 47.826 0.00 0.00 0.00 2.15
39 40 4.902448 GGTGAACTACTCCCTCCTTATCAT 59.098 45.833 0.00 0.00 0.00 2.45
40 41 5.221541 GGTGAACTACTCCCTCCTTATCATG 60.222 48.000 0.00 0.00 0.00 3.07
41 42 4.901849 TGAACTACTCCCTCCTTATCATGG 59.098 45.833 0.00 0.00 0.00 3.66
42 43 4.834406 ACTACTCCCTCCTTATCATGGA 57.166 45.455 0.00 0.00 0.00 3.41
49 50 0.681733 TCCTTATCATGGAGAGCGCC 59.318 55.000 2.29 0.00 0.00 6.53
50 51 0.668706 CCTTATCATGGAGAGCGCCG 60.669 60.000 2.29 0.00 0.00 6.46
51 52 0.668706 CTTATCATGGAGAGCGCCGG 60.669 60.000 2.29 0.00 0.00 6.13
52 53 2.099652 TTATCATGGAGAGCGCCGGG 62.100 60.000 2.29 0.00 0.00 5.73
53 54 2.994643 TATCATGGAGAGCGCCGGGA 62.995 60.000 2.29 0.00 0.00 5.14
54 55 3.933722 CATGGAGAGCGCCGGGAT 61.934 66.667 2.29 0.00 0.00 3.85
55 56 3.933722 ATGGAGAGCGCCGGGATG 61.934 66.667 2.29 0.00 0.00 3.51
57 58 3.620785 GGAGAGCGCCGGGATGAT 61.621 66.667 2.29 0.00 0.00 2.45
58 59 2.356793 GAGAGCGCCGGGATGATG 60.357 66.667 2.29 0.00 0.00 3.07
59 60 2.839632 AGAGCGCCGGGATGATGA 60.840 61.111 2.29 0.00 0.00 2.92
60 61 2.356793 GAGCGCCGGGATGATGAG 60.357 66.667 2.29 0.00 0.00 2.90
61 62 3.873026 GAGCGCCGGGATGATGAGG 62.873 68.421 2.29 0.00 0.00 3.86
62 63 3.928779 GCGCCGGGATGATGAGGA 61.929 66.667 2.18 0.00 0.00 3.71
63 64 3.063526 CGCCGGGATGATGAGGAT 58.936 61.111 2.18 0.00 0.00 3.24
64 65 1.375140 CGCCGGGATGATGAGGATG 60.375 63.158 2.18 0.00 0.00 3.51
65 66 1.002868 GCCGGGATGATGAGGATGG 60.003 63.158 2.18 0.00 0.00 3.51
66 67 1.002868 CCGGGATGATGAGGATGGC 60.003 63.158 0.00 0.00 0.00 4.40
67 68 1.002868 CGGGATGATGAGGATGGCC 60.003 63.158 0.00 0.00 0.00 5.36
68 69 1.771783 CGGGATGATGAGGATGGCCA 61.772 60.000 8.56 8.56 36.29 5.36
69 70 0.251077 GGGATGATGAGGATGGCCAC 60.251 60.000 8.16 1.35 36.29 5.01
70 71 0.251077 GGATGATGAGGATGGCCACC 60.251 60.000 8.16 12.35 36.29 4.61
71 72 0.604780 GATGATGAGGATGGCCACCG 60.605 60.000 8.16 0.00 36.29 4.94
72 73 2.060567 ATGATGAGGATGGCCACCGG 62.061 60.000 8.16 0.00 36.29 5.28
73 74 2.692368 ATGAGGATGGCCACCGGT 60.692 61.111 8.16 0.00 36.29 5.28
74 75 2.947938 GATGAGGATGGCCACCGGTG 62.948 65.000 28.26 28.26 36.29 4.94
75 76 3.399181 GAGGATGGCCACCGGTGA 61.399 66.667 36.07 17.04 36.29 4.02
76 77 2.692368 AGGATGGCCACCGGTGAT 60.692 61.111 36.07 21.33 36.29 3.06
77 78 2.516930 GGATGGCCACCGGTGATG 60.517 66.667 36.07 20.83 0.00 3.07
78 79 3.211963 GATGGCCACCGGTGATGC 61.212 66.667 36.07 28.88 0.00 3.91
102 103 2.584608 CCTCCGGCAGGGTGTTAG 59.415 66.667 2.05 0.00 38.91 2.34
103 104 1.987855 CCTCCGGCAGGGTGTTAGA 60.988 63.158 2.05 0.00 38.91 2.10
104 105 1.550130 CCTCCGGCAGGGTGTTAGAA 61.550 60.000 2.05 0.00 38.91 2.10
105 106 0.541863 CTCCGGCAGGGTGTTAGAAT 59.458 55.000 2.05 0.00 38.33 2.40
106 107 1.760613 CTCCGGCAGGGTGTTAGAATA 59.239 52.381 2.05 0.00 38.33 1.75
107 108 1.760613 TCCGGCAGGGTGTTAGAATAG 59.239 52.381 2.05 0.00 38.33 1.73
108 109 1.202651 CCGGCAGGGTGTTAGAATAGG 60.203 57.143 0.00 0.00 0.00 2.57
109 110 1.202651 CGGCAGGGTGTTAGAATAGGG 60.203 57.143 0.00 0.00 0.00 3.53
110 111 1.844497 GGCAGGGTGTTAGAATAGGGT 59.156 52.381 0.00 0.00 0.00 4.34
111 112 2.158798 GGCAGGGTGTTAGAATAGGGTC 60.159 54.545 0.00 0.00 0.00 4.46
112 113 2.158798 GCAGGGTGTTAGAATAGGGTCC 60.159 54.545 0.00 0.00 0.00 4.46
113 114 2.438392 CAGGGTGTTAGAATAGGGTCCC 59.562 54.545 0.00 0.00 0.00 4.46
114 115 1.415289 GGGTGTTAGAATAGGGTCCCG 59.585 57.143 0.99 0.00 0.00 5.14
115 116 2.391678 GGTGTTAGAATAGGGTCCCGA 58.608 52.381 0.99 0.00 0.00 5.14
116 117 2.970640 GGTGTTAGAATAGGGTCCCGAT 59.029 50.000 0.99 0.00 0.00 4.18
117 118 3.390311 GGTGTTAGAATAGGGTCCCGATT 59.610 47.826 15.61 15.61 31.75 3.34
118 119 4.502777 GGTGTTAGAATAGGGTCCCGATTC 60.503 50.000 27.92 27.92 43.01 2.52
119 120 3.319972 TGTTAGAATAGGGTCCCGATTCG 59.680 47.826 28.33 0.00 45.76 3.34
120 121 2.083628 AGAATAGGGTCCCGATTCGT 57.916 50.000 28.33 18.35 45.76 3.85
121 122 2.395619 AGAATAGGGTCCCGATTCGTT 58.604 47.619 28.33 15.72 45.76 3.85
122 123 2.770232 AGAATAGGGTCCCGATTCGTTT 59.230 45.455 28.33 15.14 45.76 3.60
123 124 3.199289 AGAATAGGGTCCCGATTCGTTTT 59.801 43.478 28.33 14.86 45.76 2.43
124 125 3.639672 ATAGGGTCCCGATTCGTTTTT 57.360 42.857 0.99 0.00 0.00 1.94
125 126 4.758773 ATAGGGTCCCGATTCGTTTTTA 57.241 40.909 0.99 0.00 0.00 1.52
126 127 2.981898 AGGGTCCCGATTCGTTTTTAG 58.018 47.619 0.99 0.00 0.00 1.85
127 128 2.303890 AGGGTCCCGATTCGTTTTTAGT 59.696 45.455 0.99 0.00 0.00 2.24
128 129 2.417586 GGGTCCCGATTCGTTTTTAGTG 59.582 50.000 5.20 0.00 0.00 2.74
129 130 2.417586 GGTCCCGATTCGTTTTTAGTGG 59.582 50.000 5.20 0.00 0.00 4.00
130 131 2.078392 TCCCGATTCGTTTTTAGTGGC 58.922 47.619 5.20 0.00 0.00 5.01
131 132 2.081462 CCCGATTCGTTTTTAGTGGCT 58.919 47.619 5.20 0.00 0.00 4.75
132 133 3.055963 TCCCGATTCGTTTTTAGTGGCTA 60.056 43.478 5.20 0.00 0.00 3.93
133 134 3.875134 CCCGATTCGTTTTTAGTGGCTAT 59.125 43.478 5.20 0.00 0.00 2.97
134 135 5.051816 CCCGATTCGTTTTTAGTGGCTATA 58.948 41.667 5.20 0.00 0.00 1.31
135 136 5.176958 CCCGATTCGTTTTTAGTGGCTATAG 59.823 44.000 5.20 0.00 0.00 1.31
136 137 5.981315 CCGATTCGTTTTTAGTGGCTATAGA 59.019 40.000 3.21 0.00 0.00 1.98
137 138 6.144080 CCGATTCGTTTTTAGTGGCTATAGAG 59.856 42.308 3.21 0.00 0.00 2.43
138 139 6.144080 CGATTCGTTTTTAGTGGCTATAGAGG 59.856 42.308 3.21 0.00 0.00 3.69
145 146 4.683432 GGCTATAGAGGCTTGCGG 57.317 61.111 3.21 0.00 44.83 5.69
146 147 1.669437 GGCTATAGAGGCTTGCGGC 60.669 63.158 3.21 0.00 44.83 6.53
162 163 4.593864 GCCGTGGAGCTCCCGATC 62.594 72.222 32.44 22.98 37.93 3.69
163 164 2.835431 CCGTGGAGCTCCCGATCT 60.835 66.667 32.44 0.00 37.93 2.75
164 165 2.427245 CCGTGGAGCTCCCGATCTT 61.427 63.158 32.44 0.00 37.93 2.40
165 166 1.227089 CGTGGAGCTCCCGATCTTG 60.227 63.158 29.95 7.82 37.93 3.02
166 167 1.144936 GTGGAGCTCCCGATCTTGG 59.855 63.158 29.95 0.00 37.93 3.61
167 168 1.306141 TGGAGCTCCCGATCTTGGT 60.306 57.895 29.95 0.00 37.93 3.67
168 169 0.909610 TGGAGCTCCCGATCTTGGTT 60.910 55.000 29.95 0.00 37.93 3.67
169 170 0.179070 GGAGCTCCCGATCTTGGTTC 60.179 60.000 23.19 0.00 0.00 3.62
170 171 0.827368 GAGCTCCCGATCTTGGTTCT 59.173 55.000 0.87 0.00 0.00 3.01
171 172 0.539051 AGCTCCCGATCTTGGTTCTG 59.461 55.000 0.00 0.00 0.00 3.02
172 173 0.250513 GCTCCCGATCTTGGTTCTGT 59.749 55.000 0.00 0.00 0.00 3.41
173 174 1.339151 GCTCCCGATCTTGGTTCTGTT 60.339 52.381 0.00 0.00 0.00 3.16
174 175 2.622436 CTCCCGATCTTGGTTCTGTTC 58.378 52.381 0.00 0.00 0.00 3.18
175 176 2.234908 CTCCCGATCTTGGTTCTGTTCT 59.765 50.000 0.00 0.00 0.00 3.01
176 177 2.028112 TCCCGATCTTGGTTCTGTTCTG 60.028 50.000 0.00 0.00 0.00 3.02
177 178 2.028112 CCCGATCTTGGTTCTGTTCTGA 60.028 50.000 0.00 0.00 0.00 3.27
178 179 3.557054 CCCGATCTTGGTTCTGTTCTGAA 60.557 47.826 0.00 0.00 0.00 3.02
179 180 4.065088 CCGATCTTGGTTCTGTTCTGAAA 58.935 43.478 0.00 0.00 0.00 2.69
180 181 4.153117 CCGATCTTGGTTCTGTTCTGAAAG 59.847 45.833 0.00 0.00 0.00 2.62
181 182 4.752101 CGATCTTGGTTCTGTTCTGAAAGT 59.248 41.667 0.00 0.00 33.76 2.66
182 183 5.237344 CGATCTTGGTTCTGTTCTGAAAGTT 59.763 40.000 0.00 0.00 33.76 2.66
183 184 6.238484 CGATCTTGGTTCTGTTCTGAAAGTTT 60.238 38.462 0.00 0.00 33.76 2.66
184 185 6.194796 TCTTGGTTCTGTTCTGAAAGTTTG 57.805 37.500 0.00 0.00 33.76 2.93
185 186 4.981806 TGGTTCTGTTCTGAAAGTTTGG 57.018 40.909 0.00 0.00 33.76 3.28
186 187 3.699038 TGGTTCTGTTCTGAAAGTTTGGG 59.301 43.478 0.00 0.00 33.76 4.12
187 188 3.068165 GGTTCTGTTCTGAAAGTTTGGGG 59.932 47.826 0.00 0.00 33.76 4.96
188 189 3.943671 TCTGTTCTGAAAGTTTGGGGA 57.056 42.857 0.00 0.00 33.76 4.81
189 190 4.453480 TCTGTTCTGAAAGTTTGGGGAT 57.547 40.909 0.00 0.00 33.76 3.85
190 191 5.576563 TCTGTTCTGAAAGTTTGGGGATA 57.423 39.130 0.00 0.00 33.76 2.59
191 192 6.139679 TCTGTTCTGAAAGTTTGGGGATAT 57.860 37.500 0.00 0.00 33.76 1.63
192 193 7.265599 TCTGTTCTGAAAGTTTGGGGATATA 57.734 36.000 0.00 0.00 33.76 0.86
193 194 7.872138 TCTGTTCTGAAAGTTTGGGGATATAT 58.128 34.615 0.00 0.00 33.76 0.86
194 195 8.998814 TCTGTTCTGAAAGTTTGGGGATATATA 58.001 33.333 0.00 0.00 33.76 0.86
195 196 9.627123 CTGTTCTGAAAGTTTGGGGATATATAA 57.373 33.333 0.00 0.00 33.76 0.98
196 197 9.627123 TGTTCTGAAAGTTTGGGGATATATAAG 57.373 33.333 0.00 0.00 33.76 1.73
197 198 9.847224 GTTCTGAAAGTTTGGGGATATATAAGA 57.153 33.333 0.00 0.00 33.76 2.10
199 200 8.660435 TCTGAAAGTTTGGGGATATATAAGAGG 58.340 37.037 0.00 0.00 33.76 3.69
200 201 8.344939 TGAAAGTTTGGGGATATATAAGAGGT 57.655 34.615 0.00 0.00 0.00 3.85
201 202 8.217799 TGAAAGTTTGGGGATATATAAGAGGTG 58.782 37.037 0.00 0.00 0.00 4.00
202 203 7.707467 AAGTTTGGGGATATATAAGAGGTGT 57.293 36.000 0.00 0.00 0.00 4.16
203 204 7.707467 AGTTTGGGGATATATAAGAGGTGTT 57.293 36.000 0.00 0.00 0.00 3.32
204 205 7.518188 AGTTTGGGGATATATAAGAGGTGTTG 58.482 38.462 0.00 0.00 0.00 3.33
205 206 6.448369 TTGGGGATATATAAGAGGTGTTGG 57.552 41.667 0.00 0.00 0.00 3.77
206 207 4.288626 TGGGGATATATAAGAGGTGTTGGC 59.711 45.833 0.00 0.00 0.00 4.52
207 208 4.504858 GGGATATATAAGAGGTGTTGGCG 58.495 47.826 0.00 0.00 0.00 5.69
208 209 4.020485 GGGATATATAAGAGGTGTTGGCGT 60.020 45.833 0.00 0.00 0.00 5.68
209 210 5.169295 GGATATATAAGAGGTGTTGGCGTC 58.831 45.833 0.00 0.00 0.00 5.19
210 211 5.279306 GGATATATAAGAGGTGTTGGCGTCA 60.279 44.000 0.00 0.00 0.00 4.35
211 212 2.386661 ATAAGAGGTGTTGGCGTCAG 57.613 50.000 0.00 0.00 0.00 3.51
212 213 0.320374 TAAGAGGTGTTGGCGTCAGG 59.680 55.000 0.00 0.00 0.00 3.86
213 214 1.407656 AAGAGGTGTTGGCGTCAGGA 61.408 55.000 0.00 0.00 0.00 3.86
214 215 1.070786 GAGGTGTTGGCGTCAGGAA 59.929 57.895 0.00 0.00 0.00 3.36
215 216 1.227853 AGGTGTTGGCGTCAGGAAC 60.228 57.895 0.00 0.00 0.00 3.62
216 217 1.525077 GGTGTTGGCGTCAGGAACA 60.525 57.895 0.00 0.00 0.00 3.18
217 218 1.098712 GGTGTTGGCGTCAGGAACAA 61.099 55.000 0.00 0.00 31.62 2.83
218 219 0.307760 GTGTTGGCGTCAGGAACAAG 59.692 55.000 0.00 0.00 31.62 3.16
219 220 0.107410 TGTTGGCGTCAGGAACAAGT 60.107 50.000 0.00 0.00 0.00 3.16
220 221 0.307760 GTTGGCGTCAGGAACAAGTG 59.692 55.000 0.00 0.00 0.00 3.16
221 222 0.179234 TTGGCGTCAGGAACAAGTGA 59.821 50.000 0.00 0.00 0.00 3.41
222 223 0.249868 TGGCGTCAGGAACAAGTGAG 60.250 55.000 0.00 0.00 0.00 3.51
223 224 0.951040 GGCGTCAGGAACAAGTGAGG 60.951 60.000 0.00 0.00 0.00 3.86
224 225 0.951040 GCGTCAGGAACAAGTGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
225 226 0.320771 CGTCAGGAACAAGTGAGGGG 60.321 60.000 0.00 0.00 0.00 4.79
226 227 0.036875 GTCAGGAACAAGTGAGGGGG 59.963 60.000 0.00 0.00 0.00 5.40
252 253 2.599281 TCCACGAGGAAGCCACGA 60.599 61.111 10.13 0.00 42.23 4.35
253 254 2.125912 CCACGAGGAAGCCACGAG 60.126 66.667 10.13 2.34 39.84 4.18
254 255 2.125912 CACGAGGAAGCCACGAGG 60.126 66.667 10.13 0.00 39.84 4.63
255 256 2.600769 ACGAGGAAGCCACGAGGT 60.601 61.111 10.13 0.00 39.84 3.85
256 257 1.303888 ACGAGGAAGCCACGAGGTA 60.304 57.895 10.13 0.00 39.84 3.08
257 258 1.313812 ACGAGGAAGCCACGAGGTAG 61.314 60.000 10.13 0.00 39.84 3.18
258 259 1.817209 GAGGAAGCCACGAGGTAGG 59.183 63.158 0.00 0.00 37.19 3.18
259 260 1.677637 GAGGAAGCCACGAGGTAGGG 61.678 65.000 0.00 0.00 37.19 3.53
260 261 2.732619 GGAAGCCACGAGGTAGGGG 61.733 68.421 0.00 0.00 37.86 4.79
261 262 2.687566 AAGCCACGAGGTAGGGGG 60.688 66.667 0.00 0.00 34.56 5.40
262 263 3.248248 AAGCCACGAGGTAGGGGGA 62.248 63.158 0.00 0.00 34.56 4.81
263 264 2.446036 GCCACGAGGTAGGGGGAT 60.446 66.667 0.00 0.00 34.56 3.85
264 265 2.508751 GCCACGAGGTAGGGGGATC 61.509 68.421 0.00 0.00 34.56 3.36
265 266 1.837499 CCACGAGGTAGGGGGATCC 60.837 68.421 1.92 1.92 0.00 3.36
282 283 3.480133 CCCAAGGGAGGTAGGGCG 61.480 72.222 0.00 0.00 37.50 6.13
283 284 4.176752 CCAAGGGAGGTAGGGCGC 62.177 72.222 0.00 0.00 0.00 6.53
284 285 4.530857 CAAGGGAGGTAGGGCGCG 62.531 72.222 0.00 0.00 0.00 6.86
300 301 4.722700 CGCCCTCCACCCTGTTGG 62.723 72.222 0.00 0.00 41.37 3.77
309 310 4.722700 CCCTGTTGGTGGCCTCGG 62.723 72.222 3.32 0.00 0.00 4.63
310 311 4.722700 CCTGTTGGTGGCCTCGGG 62.723 72.222 3.32 0.07 0.00 5.14
311 312 3.636231 CTGTTGGTGGCCTCGGGA 61.636 66.667 3.32 0.00 0.00 5.14
312 313 3.901797 CTGTTGGTGGCCTCGGGAC 62.902 68.421 3.32 0.50 0.00 4.46
313 314 3.637273 GTTGGTGGCCTCGGGACT 61.637 66.667 3.32 0.00 0.00 3.85
314 315 3.319198 TTGGTGGCCTCGGGACTC 61.319 66.667 3.32 0.00 0.00 3.36
315 316 3.846405 TTGGTGGCCTCGGGACTCT 62.846 63.158 3.32 0.00 0.00 3.24
316 317 3.003763 GGTGGCCTCGGGACTCTT 61.004 66.667 3.32 0.00 0.00 2.85
317 318 2.579738 GTGGCCTCGGGACTCTTC 59.420 66.667 3.32 0.00 0.00 2.87
318 319 1.985116 GTGGCCTCGGGACTCTTCT 60.985 63.158 3.32 0.00 0.00 2.85
319 320 1.984570 TGGCCTCGGGACTCTTCTG 60.985 63.158 3.32 0.00 0.00 3.02
320 321 2.726351 GGCCTCGGGACTCTTCTGG 61.726 68.421 0.00 0.00 0.00 3.86
321 322 1.985116 GCCTCGGGACTCTTCTGGT 60.985 63.158 0.00 0.00 0.00 4.00
322 323 1.950973 GCCTCGGGACTCTTCTGGTC 61.951 65.000 0.00 0.00 0.00 4.02
331 332 4.543590 GACTCTTCTGGTCCATCTTCAA 57.456 45.455 0.00 0.00 0.00 2.69
332 333 5.096443 GACTCTTCTGGTCCATCTTCAAT 57.904 43.478 0.00 0.00 0.00 2.57
333 334 4.841422 ACTCTTCTGGTCCATCTTCAATG 58.159 43.478 0.00 0.00 0.00 2.82
334 335 3.614092 TCTTCTGGTCCATCTTCAATGC 58.386 45.455 0.00 0.00 0.00 3.56
335 336 3.265221 TCTTCTGGTCCATCTTCAATGCT 59.735 43.478 0.00 0.00 0.00 3.79
336 337 3.272574 TCTGGTCCATCTTCAATGCTC 57.727 47.619 0.00 0.00 0.00 4.26
337 338 2.092753 TCTGGTCCATCTTCAATGCTCC 60.093 50.000 0.00 0.00 0.00 4.70
338 339 1.064463 TGGTCCATCTTCAATGCTCCC 60.064 52.381 0.00 0.00 0.00 4.30
339 340 1.213926 GGTCCATCTTCAATGCTCCCT 59.786 52.381 0.00 0.00 0.00 4.20
340 341 2.295885 GTCCATCTTCAATGCTCCCTG 58.704 52.381 0.00 0.00 0.00 4.45
341 342 1.213678 TCCATCTTCAATGCTCCCTGG 59.786 52.381 0.00 0.00 0.00 4.45
342 343 1.688772 CATCTTCAATGCTCCCTGGG 58.311 55.000 6.33 6.33 0.00 4.45
343 344 0.106318 ATCTTCAATGCTCCCTGGGC 60.106 55.000 8.22 0.00 0.00 5.36
344 345 1.210204 TCTTCAATGCTCCCTGGGCT 61.210 55.000 8.22 0.00 0.00 5.19
345 346 0.324091 CTTCAATGCTCCCTGGGCTT 60.324 55.000 8.22 0.00 0.00 4.35
346 347 0.323725 TTCAATGCTCCCTGGGCTTC 60.324 55.000 8.22 0.00 0.00 3.86
347 348 1.210204 TCAATGCTCCCTGGGCTTCT 61.210 55.000 8.22 0.00 0.00 2.85
348 349 0.324091 CAATGCTCCCTGGGCTTCTT 60.324 55.000 8.22 0.00 0.00 2.52
349 350 1.064463 CAATGCTCCCTGGGCTTCTTA 60.064 52.381 8.22 0.00 0.00 2.10
350 351 1.527457 ATGCTCCCTGGGCTTCTTAT 58.473 50.000 8.22 0.00 0.00 1.73
351 352 0.548031 TGCTCCCTGGGCTTCTTATG 59.452 55.000 8.22 0.00 0.00 1.90
352 353 0.179006 GCTCCCTGGGCTTCTTATGG 60.179 60.000 8.22 0.00 0.00 2.74
353 354 1.216990 CTCCCTGGGCTTCTTATGGT 58.783 55.000 8.22 0.00 0.00 3.55
354 355 1.141858 CTCCCTGGGCTTCTTATGGTC 59.858 57.143 8.22 0.00 0.00 4.02
355 356 0.183731 CCCTGGGCTTCTTATGGTCC 59.816 60.000 0.00 0.00 0.00 4.46
356 357 0.918983 CCTGGGCTTCTTATGGTCCA 59.081 55.000 0.00 0.00 0.00 4.02
357 358 1.284785 CCTGGGCTTCTTATGGTCCAA 59.715 52.381 0.00 0.00 0.00 3.53
358 359 2.291540 CCTGGGCTTCTTATGGTCCAAA 60.292 50.000 0.00 0.00 0.00 3.28
359 360 3.430453 CTGGGCTTCTTATGGTCCAAAA 58.570 45.455 0.00 0.00 0.00 2.44
360 361 3.831911 CTGGGCTTCTTATGGTCCAAAAA 59.168 43.478 0.00 0.00 0.00 1.94
361 362 4.424842 TGGGCTTCTTATGGTCCAAAAAT 58.575 39.130 0.00 0.00 0.00 1.82
362 363 5.584913 TGGGCTTCTTATGGTCCAAAAATA 58.415 37.500 0.00 0.00 0.00 1.40
363 364 6.019748 TGGGCTTCTTATGGTCCAAAAATAA 58.980 36.000 0.00 0.00 0.00 1.40
364 365 6.671779 TGGGCTTCTTATGGTCCAAAAATAAT 59.328 34.615 0.00 0.00 0.00 1.28
365 366 7.147742 TGGGCTTCTTATGGTCCAAAAATAATC 60.148 37.037 0.00 0.00 0.00 1.75
366 367 7.069950 GGGCTTCTTATGGTCCAAAAATAATCT 59.930 37.037 0.00 0.00 0.00 2.40
367 368 8.478066 GGCTTCTTATGGTCCAAAAATAATCTT 58.522 33.333 0.00 0.00 0.00 2.40
368 369 9.521503 GCTTCTTATGGTCCAAAAATAATCTTC 57.478 33.333 0.00 0.00 0.00 2.87
369 370 9.722056 CTTCTTATGGTCCAAAAATAATCTTCG 57.278 33.333 0.00 0.00 0.00 3.79
370 371 8.801882 TCTTATGGTCCAAAAATAATCTTCGT 57.198 30.769 0.00 0.00 0.00 3.85
371 372 9.893634 TCTTATGGTCCAAAAATAATCTTCGTA 57.106 29.630 0.00 0.00 0.00 3.43
373 374 9.893634 TTATGGTCCAAAAATAATCTTCGTAGA 57.106 29.630 0.00 0.00 34.21 2.59
374 375 8.980481 ATGGTCCAAAAATAATCTTCGTAGAT 57.020 30.769 0.00 0.00 43.01 1.98
376 377 9.238368 TGGTCCAAAAATAATCTTCGTAGATTT 57.762 29.630 20.42 7.80 46.53 2.17
384 385 9.667107 AAATAATCTTCGTAGATTTTCAGGTCA 57.333 29.630 20.42 2.88 46.53 4.02
385 386 9.667107 AATAATCTTCGTAGATTTTCAGGTCAA 57.333 29.630 20.42 2.23 46.53 3.18
386 387 9.838339 ATAATCTTCGTAGATTTTCAGGTCAAT 57.162 29.630 20.42 4.31 46.53 2.57
387 388 8.567285 AATCTTCGTAGATTTTCAGGTCAATT 57.433 30.769 11.12 0.00 46.53 2.32
388 389 7.364522 TCTTCGTAGATTTTCAGGTCAATTG 57.635 36.000 0.00 0.00 35.04 2.32
389 390 6.371548 TCTTCGTAGATTTTCAGGTCAATTGG 59.628 38.462 5.42 0.00 35.04 3.16
390 391 5.800296 TCGTAGATTTTCAGGTCAATTGGA 58.200 37.500 5.42 0.00 0.00 3.53
391 392 5.642063 TCGTAGATTTTCAGGTCAATTGGAC 59.358 40.000 5.42 2.73 46.20 4.02
392 393 5.643777 CGTAGATTTTCAGGTCAATTGGACT 59.356 40.000 5.42 1.20 46.16 3.85
393 394 6.149474 CGTAGATTTTCAGGTCAATTGGACTT 59.851 38.462 5.42 0.00 46.16 3.01
394 395 6.581171 AGATTTTCAGGTCAATTGGACTTC 57.419 37.500 5.42 0.00 46.16 3.01
395 396 4.829064 TTTTCAGGTCAATTGGACTTCG 57.171 40.909 5.42 0.00 46.16 3.79
396 397 3.485463 TTCAGGTCAATTGGACTTCGT 57.515 42.857 5.42 0.00 46.16 3.85
397 398 3.485463 TCAGGTCAATTGGACTTCGTT 57.515 42.857 5.42 0.00 46.16 3.85
398 399 3.815809 TCAGGTCAATTGGACTTCGTTT 58.184 40.909 5.42 0.00 46.16 3.60
399 400 4.963373 TCAGGTCAATTGGACTTCGTTTA 58.037 39.130 5.42 0.00 46.16 2.01
400 401 5.369833 TCAGGTCAATTGGACTTCGTTTAA 58.630 37.500 5.42 0.00 46.16 1.52
401 402 6.001460 TCAGGTCAATTGGACTTCGTTTAAT 58.999 36.000 5.42 0.00 46.16 1.40
402 403 7.162761 TCAGGTCAATTGGACTTCGTTTAATA 58.837 34.615 5.42 0.00 46.16 0.98
403 404 7.827236 TCAGGTCAATTGGACTTCGTTTAATAT 59.173 33.333 5.42 0.00 46.16 1.28
404 405 8.458843 CAGGTCAATTGGACTTCGTTTAATATT 58.541 33.333 5.42 0.00 46.16 1.28
405 406 8.674607 AGGTCAATTGGACTTCGTTTAATATTC 58.325 33.333 5.42 0.00 46.16 1.75
406 407 7.913821 GGTCAATTGGACTTCGTTTAATATTCC 59.086 37.037 5.42 0.00 46.16 3.01
407 408 8.674607 GTCAATTGGACTTCGTTTAATATTCCT 58.325 33.333 5.42 0.00 43.46 3.36
408 409 9.238368 TCAATTGGACTTCGTTTAATATTCCTT 57.762 29.630 5.42 0.00 0.00 3.36
409 410 9.855021 CAATTGGACTTCGTTTAATATTCCTTT 57.145 29.630 0.00 0.00 0.00 3.11
412 413 8.857694 TGGACTTCGTTTAATATTCCTTTTCT 57.142 30.769 0.00 0.00 0.00 2.52
413 414 8.726988 TGGACTTCGTTTAATATTCCTTTTCTG 58.273 33.333 0.00 0.00 0.00 3.02
414 415 7.696872 GGACTTCGTTTAATATTCCTTTTCTGC 59.303 37.037 0.00 0.00 0.00 4.26
415 416 7.241376 ACTTCGTTTAATATTCCTTTTCTGCG 58.759 34.615 0.00 0.00 0.00 5.18
416 417 6.971527 TCGTTTAATATTCCTTTTCTGCGA 57.028 33.333 0.00 0.00 0.00 5.10
417 418 7.548196 TCGTTTAATATTCCTTTTCTGCGAT 57.452 32.000 0.00 0.00 0.00 4.58
418 419 8.651391 TCGTTTAATATTCCTTTTCTGCGATA 57.349 30.769 0.00 0.00 0.00 2.92
419 420 8.545420 TCGTTTAATATTCCTTTTCTGCGATAC 58.455 33.333 0.00 0.00 0.00 2.24
420 421 8.548721 CGTTTAATATTCCTTTTCTGCGATACT 58.451 33.333 0.00 0.00 0.00 2.12
421 422 9.865484 GTTTAATATTCCTTTTCTGCGATACTC 57.135 33.333 0.00 0.00 0.00 2.59
422 423 9.607988 TTTAATATTCCTTTTCTGCGATACTCA 57.392 29.630 0.00 0.00 0.00 3.41
423 424 9.607988 TTAATATTCCTTTTCTGCGATACTCAA 57.392 29.630 0.00 0.00 0.00 3.02
424 425 8.506168 AATATTCCTTTTCTGCGATACTCAAA 57.494 30.769 0.00 0.00 0.00 2.69
425 426 6.817765 ATTCCTTTTCTGCGATACTCAAAA 57.182 33.333 0.00 0.00 0.00 2.44
426 427 6.627395 TTCCTTTTCTGCGATACTCAAAAA 57.373 33.333 0.00 0.00 0.00 1.94
427 428 5.997385 TCCTTTTCTGCGATACTCAAAAAC 58.003 37.500 0.00 0.00 0.00 2.43
428 429 5.529430 TCCTTTTCTGCGATACTCAAAAACA 59.471 36.000 0.00 0.00 0.00 2.83
429 430 6.038825 TCCTTTTCTGCGATACTCAAAAACAA 59.961 34.615 0.00 0.00 0.00 2.83
430 431 6.360681 CCTTTTCTGCGATACTCAAAAACAAG 59.639 38.462 0.00 0.00 0.00 3.16
431 432 5.356882 TTCTGCGATACTCAAAAACAAGG 57.643 39.130 0.00 0.00 0.00 3.61
432 433 4.637276 TCTGCGATACTCAAAAACAAGGA 58.363 39.130 0.00 0.00 0.00 3.36
433 434 5.060506 TCTGCGATACTCAAAAACAAGGAA 58.939 37.500 0.00 0.00 0.00 3.36
434 435 5.529430 TCTGCGATACTCAAAAACAAGGAAA 59.471 36.000 0.00 0.00 0.00 3.13
435 436 6.038825 TCTGCGATACTCAAAAACAAGGAAAA 59.961 34.615 0.00 0.00 0.00 2.29
436 437 6.565234 TGCGATACTCAAAAACAAGGAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
456 457 3.443099 AAACAGAAACTGGCTTTGAGC 57.557 42.857 0.00 0.00 41.46 4.26
457 458 2.355010 ACAGAAACTGGCTTTGAGCT 57.645 45.000 0.00 0.00 41.99 4.09
458 459 2.225467 ACAGAAACTGGCTTTGAGCTC 58.775 47.619 6.82 6.82 41.99 4.09
459 460 2.158696 ACAGAAACTGGCTTTGAGCTCT 60.159 45.455 16.19 0.00 41.99 4.09
460 461 3.071602 ACAGAAACTGGCTTTGAGCTCTA 59.928 43.478 16.19 4.09 41.99 2.43
461 462 3.683822 CAGAAACTGGCTTTGAGCTCTAG 59.316 47.826 16.19 13.06 41.99 2.43
462 463 2.777832 AACTGGCTTTGAGCTCTAGG 57.222 50.000 16.19 9.23 41.99 3.02
463 464 1.650528 ACTGGCTTTGAGCTCTAGGT 58.349 50.000 16.19 3.58 41.99 3.08
464 465 1.981495 ACTGGCTTTGAGCTCTAGGTT 59.019 47.619 16.19 0.00 41.99 3.50
465 466 3.173965 ACTGGCTTTGAGCTCTAGGTTA 58.826 45.455 16.19 0.84 41.99 2.85
466 467 3.583086 ACTGGCTTTGAGCTCTAGGTTAA 59.417 43.478 16.19 0.00 41.99 2.01
467 468 4.226168 ACTGGCTTTGAGCTCTAGGTTAAT 59.774 41.667 16.19 0.00 41.99 1.40
468 469 5.425539 ACTGGCTTTGAGCTCTAGGTTAATA 59.574 40.000 16.19 0.00 41.99 0.98
469 470 5.918608 TGGCTTTGAGCTCTAGGTTAATAG 58.081 41.667 16.19 0.87 41.99 1.73
470 471 5.163301 TGGCTTTGAGCTCTAGGTTAATAGG 60.163 44.000 16.19 0.00 41.99 2.57
471 472 5.163290 GGCTTTGAGCTCTAGGTTAATAGGT 60.163 44.000 16.19 0.00 41.99 3.08
472 473 6.350103 GCTTTGAGCTCTAGGTTAATAGGTT 58.650 40.000 16.19 0.00 38.45 3.50
473 474 7.418712 GGCTTTGAGCTCTAGGTTAATAGGTTA 60.419 40.741 16.19 0.00 41.99 2.85
474 475 7.654116 GCTTTGAGCTCTAGGTTAATAGGTTAG 59.346 40.741 16.19 0.00 38.45 2.34
475 476 8.605325 TTTGAGCTCTAGGTTAATAGGTTAGT 57.395 34.615 16.19 0.00 0.00 2.24
476 477 7.820578 TGAGCTCTAGGTTAATAGGTTAGTC 57.179 40.000 16.19 0.00 0.00 2.59
477 478 6.776603 TGAGCTCTAGGTTAATAGGTTAGTCC 59.223 42.308 16.19 0.00 0.00 3.85
478 479 6.076653 AGCTCTAGGTTAATAGGTTAGTCCC 58.923 44.000 0.00 0.00 36.75 4.46
479 480 5.837438 GCTCTAGGTTAATAGGTTAGTCCCA 59.163 44.000 0.00 0.00 36.75 4.37
480 481 6.325804 GCTCTAGGTTAATAGGTTAGTCCCAA 59.674 42.308 0.00 0.00 36.75 4.12
481 482 7.147602 GCTCTAGGTTAATAGGTTAGTCCCAAA 60.148 40.741 0.00 0.00 36.75 3.28
482 483 8.683776 TCTAGGTTAATAGGTTAGTCCCAAAA 57.316 34.615 0.00 0.00 36.75 2.44
483 484 9.114938 TCTAGGTTAATAGGTTAGTCCCAAAAA 57.885 33.333 0.00 0.00 36.75 1.94
484 485 9.916360 CTAGGTTAATAGGTTAGTCCCAAAAAT 57.084 33.333 0.00 0.00 36.75 1.82
485 486 8.818622 AGGTTAATAGGTTAGTCCCAAAAATC 57.181 34.615 0.00 0.00 36.75 2.17
486 487 8.395605 AGGTTAATAGGTTAGTCCCAAAAATCA 58.604 33.333 0.00 0.00 36.75 2.57
487 488 9.197306 GGTTAATAGGTTAGTCCCAAAAATCAT 57.803 33.333 0.00 0.00 36.75 2.45
547 548 1.098712 TCTGTTGGGTTCACCGTTGC 61.099 55.000 0.00 0.00 44.64 4.17
565 566 2.741612 TGCGGAAAATTTGCAAGACAG 58.258 42.857 0.00 0.00 35.33 3.51
567 568 2.472488 GCGGAAAATTTGCAAGACAGTG 59.528 45.455 0.00 0.00 0.00 3.66
587 588 5.814705 CAGTGCCTGTGGTTTTTGAAAATTA 59.185 36.000 0.00 0.00 0.00 1.40
643 644 9.238477 GAAAACGATTCGATTTTGCAAATTAAG 57.762 29.630 13.65 7.56 32.48 1.85
647 648 3.855858 TCGATTTTGCAAATTAAGCCCC 58.144 40.909 13.65 0.00 0.00 5.80
648 649 2.935849 CGATTTTGCAAATTAAGCCCCC 59.064 45.455 13.65 0.00 0.00 5.40
710 711 2.203788 ACCGACAGCTCCCAGGAA 60.204 61.111 0.00 0.00 0.00 3.36
772 788 4.794439 CAGATGGACGCGCCGACA 62.794 66.667 5.73 0.00 40.66 4.35
828 871 3.175710 AACAAGGTCCTGCCCCGT 61.176 61.111 0.00 0.00 38.26 5.28
896 949 3.071206 AGTCATCGTGCTCCGGCT 61.071 61.111 0.00 0.00 39.59 5.52
1014 1067 3.403038 CGAGACCATGTTTGACTTCCTT 58.597 45.455 0.00 0.00 0.00 3.36
1147 1206 2.359169 ATGCCCACCGTCATCGTCT 61.359 57.895 0.00 0.00 35.01 4.18
1149 1208 3.001902 GCCCACCGTCATCGTCTCA 62.002 63.158 0.00 0.00 35.01 3.27
1154 1213 0.393944 ACCGTCATCGTCTCAGCCTA 60.394 55.000 0.00 0.00 35.01 3.93
1159 1218 1.493446 TCATCGTCTCAGCCTACCCTA 59.507 52.381 0.00 0.00 0.00 3.53
1160 1219 2.108425 TCATCGTCTCAGCCTACCCTAT 59.892 50.000 0.00 0.00 0.00 2.57
1299 1363 1.080705 GCTGCGTAACTCGTGTCCT 60.081 57.895 0.00 0.00 42.13 3.85
1368 1432 1.977009 TGACCTCAGTGTCGCCGAT 60.977 57.895 0.00 0.00 38.11 4.18
1396 1460 4.329545 GCAACACCGGGGCTGAGA 62.330 66.667 12.34 0.00 0.00 3.27
1413 1477 0.042431 AGACTGGCAGTGAGGAGGAT 59.958 55.000 27.45 0.00 0.00 3.24
1425 1489 0.033796 AGGAGGATACGACGGTTGGA 60.034 55.000 0.00 0.00 46.39 3.53
1582 1648 3.070734 CCGAGGAAGATCTCATGGTCATT 59.929 47.826 0.00 0.00 33.59 2.57
1604 1670 2.737376 GGGAGCCGTTCGTCACAC 60.737 66.667 0.00 0.00 0.00 3.82
1811 1939 2.225091 ACAATTGGATGTTGGAGAGCCA 60.225 45.455 10.83 0.00 44.17 4.75
1818 1946 3.434167 GGATGTTGGAGAGCCACATATGT 60.434 47.826 1.41 1.41 45.94 2.29
1819 1947 3.719268 TGTTGGAGAGCCACATATGTT 57.281 42.857 5.37 0.00 45.94 2.71
1820 1948 4.032960 TGTTGGAGAGCCACATATGTTT 57.967 40.909 5.37 0.00 45.94 2.83
1821 1949 3.758023 TGTTGGAGAGCCACATATGTTTG 59.242 43.478 5.37 1.53 45.94 2.93
1822 1950 2.368439 TGGAGAGCCACATATGTTTGC 58.632 47.619 16.02 16.02 39.92 3.68
1823 1951 2.025981 TGGAGAGCCACATATGTTTGCT 60.026 45.455 23.17 23.17 39.92 3.91
1885 2026 2.864343 GGATTTGTACGTAGAGCGCAAT 59.136 45.455 11.47 0.00 46.11 3.56
1953 2095 3.593442 TGGAAATGTCCTCCAGTTTGT 57.407 42.857 2.89 0.00 45.22 2.83
2044 2195 3.129871 GCATCTGGATAGTGAGCACTTC 58.870 50.000 8.60 6.40 42.54 3.01
2126 2277 4.843728 TCCTCCATTGTAACCATGACTTC 58.156 43.478 0.00 0.00 0.00 3.01
2168 2319 7.375280 CGTAGCAAAGATTCAATAAAGCATCAG 59.625 37.037 0.00 0.00 0.00 2.90
2191 2342 7.930325 TCAGTCAAGATATTTTATGCTCTCCAG 59.070 37.037 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.328430 GGGAGTAGTTCACCCTCGGG 61.328 65.000 0.00 0.00 42.53 5.14
11 12 2.200052 GGGAGTAGTTCACCCTCGG 58.800 63.158 0.00 0.00 42.53 4.63
15 16 1.954035 AAGGAGGGAGTAGTTCACCC 58.046 55.000 0.00 0.00 45.50 4.61
16 17 4.287552 TGATAAGGAGGGAGTAGTTCACC 58.712 47.826 0.00 0.00 0.00 4.02
17 18 5.221541 CCATGATAAGGAGGGAGTAGTTCAC 60.222 48.000 0.00 0.00 0.00 3.18
18 19 4.901849 CCATGATAAGGAGGGAGTAGTTCA 59.098 45.833 0.00 0.00 0.00 3.18
19 20 5.148502 TCCATGATAAGGAGGGAGTAGTTC 58.851 45.833 0.00 0.00 0.00 3.01
20 21 5.157770 TCCATGATAAGGAGGGAGTAGTT 57.842 43.478 0.00 0.00 0.00 2.24
21 22 4.834406 TCCATGATAAGGAGGGAGTAGT 57.166 45.455 0.00 0.00 0.00 2.73
30 31 0.681733 GGCGCTCTCCATGATAAGGA 59.318 55.000 7.64 0.00 0.00 3.36
31 32 0.668706 CGGCGCTCTCCATGATAAGG 60.669 60.000 7.64 0.00 0.00 2.69
32 33 0.668706 CCGGCGCTCTCCATGATAAG 60.669 60.000 7.64 0.00 0.00 1.73
33 34 1.367471 CCGGCGCTCTCCATGATAA 59.633 57.895 7.64 0.00 0.00 1.75
34 35 2.574018 CCCGGCGCTCTCCATGATA 61.574 63.158 7.64 0.00 0.00 2.15
35 36 3.933722 CCCGGCGCTCTCCATGAT 61.934 66.667 7.64 0.00 0.00 2.45
37 38 3.933722 ATCCCGGCGCTCTCCATG 61.934 66.667 7.64 0.00 0.00 3.66
38 39 3.933722 CATCCCGGCGCTCTCCAT 61.934 66.667 7.64 0.00 0.00 3.41
40 41 3.620785 ATCATCCCGGCGCTCTCC 61.621 66.667 7.64 0.00 0.00 3.71
41 42 2.356793 CATCATCCCGGCGCTCTC 60.357 66.667 7.64 0.00 0.00 3.20
42 43 2.839632 TCATCATCCCGGCGCTCT 60.840 61.111 7.64 0.00 0.00 4.09
43 44 2.356793 CTCATCATCCCGGCGCTC 60.357 66.667 7.64 0.00 0.00 5.03
44 45 3.933722 CCTCATCATCCCGGCGCT 61.934 66.667 7.64 0.00 0.00 5.92
45 46 3.245668 ATCCTCATCATCCCGGCGC 62.246 63.158 0.00 0.00 0.00 6.53
46 47 1.375140 CATCCTCATCATCCCGGCG 60.375 63.158 0.00 0.00 0.00 6.46
47 48 1.002868 CCATCCTCATCATCCCGGC 60.003 63.158 0.00 0.00 0.00 6.13
48 49 1.002868 GCCATCCTCATCATCCCGG 60.003 63.158 0.00 0.00 0.00 5.73
49 50 1.002868 GGCCATCCTCATCATCCCG 60.003 63.158 0.00 0.00 0.00 5.14
50 51 0.251077 GTGGCCATCCTCATCATCCC 60.251 60.000 9.72 0.00 0.00 3.85
51 52 0.251077 GGTGGCCATCCTCATCATCC 60.251 60.000 9.72 0.00 0.00 3.51
52 53 0.604780 CGGTGGCCATCCTCATCATC 60.605 60.000 9.72 0.00 0.00 2.92
53 54 1.453235 CGGTGGCCATCCTCATCAT 59.547 57.895 9.72 0.00 0.00 2.45
54 55 2.745308 CCGGTGGCCATCCTCATCA 61.745 63.158 9.72 0.00 0.00 3.07
55 56 2.111878 CCGGTGGCCATCCTCATC 59.888 66.667 9.72 0.00 0.00 2.92
56 57 2.692368 ACCGGTGGCCATCCTCAT 60.692 61.111 9.72 0.00 0.00 2.90
57 58 3.716195 CACCGGTGGCCATCCTCA 61.716 66.667 27.57 0.00 0.00 3.86
58 59 2.746375 ATCACCGGTGGCCATCCTC 61.746 63.158 33.40 0.00 0.00 3.71
59 60 2.692368 ATCACCGGTGGCCATCCT 60.692 61.111 33.40 7.77 0.00 3.24
60 61 2.516930 CATCACCGGTGGCCATCC 60.517 66.667 33.40 11.73 0.00 3.51
61 62 3.211963 GCATCACCGGTGGCCATC 61.212 66.667 33.40 7.61 0.00 3.51
86 87 0.541863 ATTCTAACACCCTGCCGGAG 59.458 55.000 5.05 0.00 34.64 4.63
87 88 1.760613 CTATTCTAACACCCTGCCGGA 59.239 52.381 5.05 0.00 34.64 5.14
88 89 1.202651 CCTATTCTAACACCCTGCCGG 60.203 57.143 0.00 0.00 37.81 6.13
89 90 1.202651 CCCTATTCTAACACCCTGCCG 60.203 57.143 0.00 0.00 0.00 5.69
90 91 1.844497 ACCCTATTCTAACACCCTGCC 59.156 52.381 0.00 0.00 0.00 4.85
91 92 2.158798 GGACCCTATTCTAACACCCTGC 60.159 54.545 0.00 0.00 0.00 4.85
92 93 2.438392 GGGACCCTATTCTAACACCCTG 59.562 54.545 2.09 0.00 33.99 4.45
93 94 2.772930 GGGACCCTATTCTAACACCCT 58.227 52.381 2.09 0.00 33.99 4.34
94 95 1.415289 CGGGACCCTATTCTAACACCC 59.585 57.143 9.41 0.00 0.00 4.61
95 96 2.391678 TCGGGACCCTATTCTAACACC 58.608 52.381 9.41 0.00 0.00 4.16
96 97 4.629092 GAATCGGGACCCTATTCTAACAC 58.371 47.826 24.24 3.92 0.00 3.32
97 98 3.319972 CGAATCGGGACCCTATTCTAACA 59.680 47.826 26.92 0.00 0.00 2.41
98 99 3.320256 ACGAATCGGGACCCTATTCTAAC 59.680 47.826 26.92 9.32 0.00 2.34
99 100 3.569491 ACGAATCGGGACCCTATTCTAA 58.431 45.455 26.92 0.06 0.00 2.10
100 101 3.234234 ACGAATCGGGACCCTATTCTA 57.766 47.619 26.92 1.59 0.00 2.10
101 102 2.083628 ACGAATCGGGACCCTATTCT 57.916 50.000 26.92 15.82 0.00 2.40
102 103 2.904697 AACGAATCGGGACCCTATTC 57.095 50.000 22.47 22.47 0.00 1.75
103 104 3.639672 AAAACGAATCGGGACCCTATT 57.360 42.857 10.02 10.02 0.00 1.73
104 105 3.639672 AAAAACGAATCGGGACCCTAT 57.360 42.857 9.41 0.00 0.00 2.57
105 106 3.515104 ACTAAAAACGAATCGGGACCCTA 59.485 43.478 9.41 0.00 0.00 3.53
106 107 2.303890 ACTAAAAACGAATCGGGACCCT 59.696 45.455 9.41 0.00 0.00 4.34
107 108 2.417586 CACTAAAAACGAATCGGGACCC 59.582 50.000 7.80 0.00 0.00 4.46
108 109 2.417586 CCACTAAAAACGAATCGGGACC 59.582 50.000 7.80 0.00 0.00 4.46
109 110 2.159612 GCCACTAAAAACGAATCGGGAC 60.160 50.000 7.80 0.00 0.00 4.46
110 111 2.078392 GCCACTAAAAACGAATCGGGA 58.922 47.619 7.80 0.00 0.00 5.14
111 112 2.081462 AGCCACTAAAAACGAATCGGG 58.919 47.619 7.80 0.00 0.00 5.14
112 113 5.981315 TCTATAGCCACTAAAAACGAATCGG 59.019 40.000 7.80 0.00 0.00 4.18
113 114 6.144080 CCTCTATAGCCACTAAAAACGAATCG 59.856 42.308 0.00 0.00 0.00 3.34
114 115 6.073711 GCCTCTATAGCCACTAAAAACGAATC 60.074 42.308 0.00 0.00 0.00 2.52
115 116 5.758784 GCCTCTATAGCCACTAAAAACGAAT 59.241 40.000 0.00 0.00 0.00 3.34
116 117 5.105064 AGCCTCTATAGCCACTAAAAACGAA 60.105 40.000 0.00 0.00 0.00 3.85
117 118 4.404715 AGCCTCTATAGCCACTAAAAACGA 59.595 41.667 0.00 0.00 0.00 3.85
118 119 4.694339 AGCCTCTATAGCCACTAAAAACG 58.306 43.478 0.00 0.00 0.00 3.60
119 120 5.220873 GCAAGCCTCTATAGCCACTAAAAAC 60.221 44.000 0.00 0.00 0.00 2.43
120 121 4.881850 GCAAGCCTCTATAGCCACTAAAAA 59.118 41.667 0.00 0.00 0.00 1.94
121 122 4.451900 GCAAGCCTCTATAGCCACTAAAA 58.548 43.478 0.00 0.00 0.00 1.52
122 123 3.492656 CGCAAGCCTCTATAGCCACTAAA 60.493 47.826 0.00 0.00 0.00 1.85
123 124 2.035961 CGCAAGCCTCTATAGCCACTAA 59.964 50.000 0.00 0.00 0.00 2.24
124 125 1.613925 CGCAAGCCTCTATAGCCACTA 59.386 52.381 0.00 0.00 0.00 2.74
125 126 0.390860 CGCAAGCCTCTATAGCCACT 59.609 55.000 0.00 0.00 0.00 4.00
126 127 0.601311 CCGCAAGCCTCTATAGCCAC 60.601 60.000 0.00 0.00 0.00 5.01
127 128 1.748403 CCGCAAGCCTCTATAGCCA 59.252 57.895 0.00 0.00 0.00 4.75
128 129 1.669437 GCCGCAAGCCTCTATAGCC 60.669 63.158 0.00 0.00 34.35 3.93
129 130 3.958748 GCCGCAAGCCTCTATAGC 58.041 61.111 0.00 0.00 34.35 2.97
145 146 4.593864 GATCGGGAGCTCCACGGC 62.594 72.222 33.29 22.43 37.91 5.68
146 147 2.427245 AAGATCGGGAGCTCCACGG 61.427 63.158 33.29 21.21 37.91 4.94
147 148 1.227089 CAAGATCGGGAGCTCCACG 60.227 63.158 33.29 30.14 37.91 4.94
148 149 1.144936 CCAAGATCGGGAGCTCCAC 59.855 63.158 33.29 21.06 37.91 4.02
149 150 0.909610 AACCAAGATCGGGAGCTCCA 60.910 55.000 33.29 15.46 37.91 3.86
150 151 0.179070 GAACCAAGATCGGGAGCTCC 60.179 60.000 25.59 25.59 0.00 4.70
151 152 0.827368 AGAACCAAGATCGGGAGCTC 59.173 55.000 4.71 4.71 0.00 4.09
152 153 0.539051 CAGAACCAAGATCGGGAGCT 59.461 55.000 12.70 0.00 0.00 4.09
153 154 0.250513 ACAGAACCAAGATCGGGAGC 59.749 55.000 12.70 4.83 0.00 4.70
154 155 2.234908 AGAACAGAACCAAGATCGGGAG 59.765 50.000 12.70 3.46 0.00 4.30
155 156 2.028112 CAGAACAGAACCAAGATCGGGA 60.028 50.000 12.70 0.00 0.00 5.14
156 157 2.028112 TCAGAACAGAACCAAGATCGGG 60.028 50.000 5.06 5.06 0.00 5.14
157 158 3.319137 TCAGAACAGAACCAAGATCGG 57.681 47.619 0.00 0.00 0.00 4.18
158 159 4.752101 ACTTTCAGAACAGAACCAAGATCG 59.248 41.667 0.00 0.00 0.00 3.69
159 160 6.625873 AACTTTCAGAACAGAACCAAGATC 57.374 37.500 0.00 0.00 0.00 2.75
160 161 6.183360 CCAAACTTTCAGAACAGAACCAAGAT 60.183 38.462 0.00 0.00 0.00 2.40
161 162 5.125417 CCAAACTTTCAGAACAGAACCAAGA 59.875 40.000 0.00 0.00 0.00 3.02
162 163 5.343249 CCAAACTTTCAGAACAGAACCAAG 58.657 41.667 0.00 0.00 0.00 3.61
163 164 4.159506 CCCAAACTTTCAGAACAGAACCAA 59.840 41.667 0.00 0.00 0.00 3.67
164 165 3.699038 CCCAAACTTTCAGAACAGAACCA 59.301 43.478 0.00 0.00 0.00 3.67
165 166 3.068165 CCCCAAACTTTCAGAACAGAACC 59.932 47.826 0.00 0.00 0.00 3.62
166 167 3.951680 TCCCCAAACTTTCAGAACAGAAC 59.048 43.478 0.00 0.00 0.00 3.01
167 168 4.243793 TCCCCAAACTTTCAGAACAGAA 57.756 40.909 0.00 0.00 0.00 3.02
168 169 3.943671 TCCCCAAACTTTCAGAACAGA 57.056 42.857 0.00 0.00 0.00 3.41
169 170 9.627123 TTATATATCCCCAAACTTTCAGAACAG 57.373 33.333 0.00 0.00 0.00 3.16
170 171 9.627123 CTTATATATCCCCAAACTTTCAGAACA 57.373 33.333 0.00 0.00 0.00 3.18
171 172 9.847224 TCTTATATATCCCCAAACTTTCAGAAC 57.153 33.333 0.00 0.00 0.00 3.01
173 174 8.660435 CCTCTTATATATCCCCAAACTTTCAGA 58.340 37.037 0.00 0.00 0.00 3.27
174 175 8.440771 ACCTCTTATATATCCCCAAACTTTCAG 58.559 37.037 0.00 0.00 0.00 3.02
175 176 8.217799 CACCTCTTATATATCCCCAAACTTTCA 58.782 37.037 0.00 0.00 0.00 2.69
176 177 8.218488 ACACCTCTTATATATCCCCAAACTTTC 58.782 37.037 0.00 0.00 0.00 2.62
177 178 8.114301 ACACCTCTTATATATCCCCAAACTTT 57.886 34.615 0.00 0.00 0.00 2.66
178 179 7.707467 ACACCTCTTATATATCCCCAAACTT 57.293 36.000 0.00 0.00 0.00 2.66
179 180 7.421382 CCAACACCTCTTATATATCCCCAAACT 60.421 40.741 0.00 0.00 0.00 2.66
180 181 6.715264 CCAACACCTCTTATATATCCCCAAAC 59.285 42.308 0.00 0.00 0.00 2.93
181 182 6.693045 GCCAACACCTCTTATATATCCCCAAA 60.693 42.308 0.00 0.00 0.00 3.28
182 183 5.222048 GCCAACACCTCTTATATATCCCCAA 60.222 44.000 0.00 0.00 0.00 4.12
183 184 4.288626 GCCAACACCTCTTATATATCCCCA 59.711 45.833 0.00 0.00 0.00 4.96
184 185 4.623171 CGCCAACACCTCTTATATATCCCC 60.623 50.000 0.00 0.00 0.00 4.81
185 186 4.020485 ACGCCAACACCTCTTATATATCCC 60.020 45.833 0.00 0.00 0.00 3.85
186 187 5.148651 ACGCCAACACCTCTTATATATCC 57.851 43.478 0.00 0.00 0.00 2.59
187 188 5.779922 TGACGCCAACACCTCTTATATATC 58.220 41.667 0.00 0.00 0.00 1.63
188 189 5.279506 CCTGACGCCAACACCTCTTATATAT 60.280 44.000 0.00 0.00 0.00 0.86
189 190 4.038763 CCTGACGCCAACACCTCTTATATA 59.961 45.833 0.00 0.00 0.00 0.86
190 191 3.181465 CCTGACGCCAACACCTCTTATAT 60.181 47.826 0.00 0.00 0.00 0.86
191 192 2.167693 CCTGACGCCAACACCTCTTATA 59.832 50.000 0.00 0.00 0.00 0.98
192 193 1.066143 CCTGACGCCAACACCTCTTAT 60.066 52.381 0.00 0.00 0.00 1.73
193 194 0.320374 CCTGACGCCAACACCTCTTA 59.680 55.000 0.00 0.00 0.00 2.10
194 195 1.071471 CCTGACGCCAACACCTCTT 59.929 57.895 0.00 0.00 0.00 2.85
195 196 1.407656 TTCCTGACGCCAACACCTCT 61.408 55.000 0.00 0.00 0.00 3.69
196 197 1.070786 TTCCTGACGCCAACACCTC 59.929 57.895 0.00 0.00 0.00 3.85
197 198 1.227853 GTTCCTGACGCCAACACCT 60.228 57.895 0.00 0.00 0.00 4.00
198 199 1.098712 TTGTTCCTGACGCCAACACC 61.099 55.000 0.00 0.00 29.74 4.16
199 200 0.307760 CTTGTTCCTGACGCCAACAC 59.692 55.000 0.00 0.00 29.74 3.32
200 201 0.107410 ACTTGTTCCTGACGCCAACA 60.107 50.000 0.00 0.00 0.00 3.33
201 202 0.307760 CACTTGTTCCTGACGCCAAC 59.692 55.000 0.00 0.00 0.00 3.77
202 203 0.179234 TCACTTGTTCCTGACGCCAA 59.821 50.000 0.00 0.00 0.00 4.52
203 204 0.249868 CTCACTTGTTCCTGACGCCA 60.250 55.000 0.00 0.00 0.00 5.69
204 205 0.951040 CCTCACTTGTTCCTGACGCC 60.951 60.000 0.00 0.00 0.00 5.68
205 206 0.951040 CCCTCACTTGTTCCTGACGC 60.951 60.000 0.00 0.00 0.00 5.19
206 207 0.320771 CCCCTCACTTGTTCCTGACG 60.321 60.000 0.00 0.00 0.00 4.35
207 208 0.036875 CCCCCTCACTTGTTCCTGAC 59.963 60.000 0.00 0.00 0.00 3.51
208 209 2.463441 CCCCCTCACTTGTTCCTGA 58.537 57.895 0.00 0.00 0.00 3.86
230 231 4.097361 GCTTCCTCGTGGACCCCC 62.097 72.222 5.53 0.00 43.06 5.40
231 232 4.097361 GGCTTCCTCGTGGACCCC 62.097 72.222 5.53 5.83 43.06 4.95
232 233 3.319198 TGGCTTCCTCGTGGACCC 61.319 66.667 5.53 10.22 43.06 4.46
233 234 2.047179 GTGGCTTCCTCGTGGACC 60.047 66.667 5.53 5.97 43.06 4.46
234 235 2.432628 CGTGGCTTCCTCGTGGAC 60.433 66.667 5.53 0.00 43.06 4.02
235 236 2.599281 TCGTGGCTTCCTCGTGGA 60.599 61.111 1.10 1.10 40.72 4.02
236 237 2.125912 CTCGTGGCTTCCTCGTGG 60.126 66.667 0.00 0.00 40.72 4.94
237 238 1.592400 TACCTCGTGGCTTCCTCGTG 61.592 60.000 2.76 5.15 40.72 4.35
238 239 1.303888 TACCTCGTGGCTTCCTCGT 60.304 57.895 2.76 0.00 40.72 4.18
239 240 1.433879 CTACCTCGTGGCTTCCTCG 59.566 63.158 2.76 1.34 41.16 4.63
240 241 1.677637 CCCTACCTCGTGGCTTCCTC 61.678 65.000 2.76 0.00 36.63 3.71
241 242 1.686110 CCCTACCTCGTGGCTTCCT 60.686 63.158 2.76 0.00 36.63 3.36
242 243 2.732619 CCCCTACCTCGTGGCTTCC 61.733 68.421 2.76 0.00 36.63 3.46
243 244 2.732619 CCCCCTACCTCGTGGCTTC 61.733 68.421 2.76 0.00 36.63 3.86
244 245 2.547123 ATCCCCCTACCTCGTGGCTT 62.547 60.000 2.76 0.00 36.63 4.35
245 246 2.948801 GATCCCCCTACCTCGTGGCT 62.949 65.000 2.76 0.00 36.63 4.75
246 247 2.446036 ATCCCCCTACCTCGTGGC 60.446 66.667 2.76 0.00 36.63 5.01
247 248 1.837499 GGATCCCCCTACCTCGTGG 60.837 68.421 0.00 0.99 39.83 4.94
248 249 3.872431 GGATCCCCCTACCTCGTG 58.128 66.667 0.00 0.00 0.00 4.35
264 265 3.097162 GCCCTACCTCCCTTGGGG 61.097 72.222 5.78 0.00 46.11 4.96
265 266 3.480133 CGCCCTACCTCCCTTGGG 61.480 72.222 0.00 0.00 42.41 4.12
266 267 4.176752 GCGCCCTACCTCCCTTGG 62.177 72.222 0.00 0.00 0.00 3.61
267 268 4.530857 CGCGCCCTACCTCCCTTG 62.531 72.222 0.00 0.00 0.00 3.61
283 284 4.722700 CCAACAGGGTGGAGGGCG 62.723 72.222 0.00 0.00 41.65 6.13
292 293 4.722700 CCGAGGCCACCAACAGGG 62.723 72.222 5.01 0.00 44.81 4.45
293 294 4.722700 CCCGAGGCCACCAACAGG 62.723 72.222 5.01 0.00 0.00 4.00
294 295 3.636231 TCCCGAGGCCACCAACAG 61.636 66.667 5.01 0.00 0.00 3.16
295 296 3.948719 GTCCCGAGGCCACCAACA 61.949 66.667 5.01 0.00 0.00 3.33
296 297 3.607370 GAGTCCCGAGGCCACCAAC 62.607 68.421 5.01 0.00 0.00 3.77
297 298 3.319198 GAGTCCCGAGGCCACCAA 61.319 66.667 5.01 0.00 0.00 3.67
298 299 3.846405 AAGAGTCCCGAGGCCACCA 62.846 63.158 5.01 0.00 0.00 4.17
299 300 3.003763 AAGAGTCCCGAGGCCACC 61.004 66.667 5.01 0.00 0.00 4.61
300 301 1.985116 AGAAGAGTCCCGAGGCCAC 60.985 63.158 5.01 0.00 0.00 5.01
301 302 1.984570 CAGAAGAGTCCCGAGGCCA 60.985 63.158 5.01 0.00 0.00 5.36
302 303 2.726351 CCAGAAGAGTCCCGAGGCC 61.726 68.421 0.00 0.00 0.00 5.19
303 304 1.950973 GACCAGAAGAGTCCCGAGGC 61.951 65.000 0.00 0.00 0.00 4.70
304 305 1.324005 GGACCAGAAGAGTCCCGAGG 61.324 65.000 0.00 0.00 46.85 4.63
305 306 2.194460 GGACCAGAAGAGTCCCGAG 58.806 63.158 0.00 0.00 46.85 4.63
306 307 4.436368 GGACCAGAAGAGTCCCGA 57.564 61.111 0.00 0.00 46.85 5.14
310 311 4.543590 TTGAAGATGGACCAGAAGAGTC 57.456 45.455 0.00 0.00 0.00 3.36
311 312 4.841422 CATTGAAGATGGACCAGAAGAGT 58.159 43.478 0.00 0.00 0.00 3.24
312 313 3.626670 GCATTGAAGATGGACCAGAAGAG 59.373 47.826 0.00 0.00 0.00 2.85
313 314 3.265221 AGCATTGAAGATGGACCAGAAGA 59.735 43.478 0.00 0.00 0.00 2.87
314 315 3.618351 AGCATTGAAGATGGACCAGAAG 58.382 45.455 0.00 0.00 0.00 2.85
315 316 3.614092 GAGCATTGAAGATGGACCAGAA 58.386 45.455 0.00 0.00 0.00 3.02
316 317 2.092753 GGAGCATTGAAGATGGACCAGA 60.093 50.000 0.00 0.00 0.00 3.86
317 318 2.295885 GGAGCATTGAAGATGGACCAG 58.704 52.381 0.00 0.00 0.00 4.00
318 319 1.064463 GGGAGCATTGAAGATGGACCA 60.064 52.381 0.00 0.00 0.00 4.02
319 320 1.213926 AGGGAGCATTGAAGATGGACC 59.786 52.381 0.00 0.00 0.00 4.46
320 321 2.295885 CAGGGAGCATTGAAGATGGAC 58.704 52.381 0.00 0.00 0.00 4.02
321 322 1.213678 CCAGGGAGCATTGAAGATGGA 59.786 52.381 0.00 0.00 0.00 3.41
322 323 1.688772 CCAGGGAGCATTGAAGATGG 58.311 55.000 0.00 0.00 0.00 3.51
323 324 1.688772 CCCAGGGAGCATTGAAGATG 58.311 55.000 0.00 0.00 0.00 2.90
324 325 0.106318 GCCCAGGGAGCATTGAAGAT 60.106 55.000 10.89 0.00 0.00 2.40
325 326 1.210204 AGCCCAGGGAGCATTGAAGA 61.210 55.000 10.89 0.00 0.00 2.87
326 327 0.324091 AAGCCCAGGGAGCATTGAAG 60.324 55.000 10.89 0.00 0.00 3.02
327 328 0.323725 GAAGCCCAGGGAGCATTGAA 60.324 55.000 10.89 0.00 0.00 2.69
328 329 1.210204 AGAAGCCCAGGGAGCATTGA 61.210 55.000 10.89 0.00 0.00 2.57
329 330 0.324091 AAGAAGCCCAGGGAGCATTG 60.324 55.000 10.89 0.00 0.00 2.82
330 331 1.298953 TAAGAAGCCCAGGGAGCATT 58.701 50.000 10.89 0.25 0.00 3.56
331 332 1.144503 CATAAGAAGCCCAGGGAGCAT 59.855 52.381 10.89 0.00 0.00 3.79
332 333 0.548031 CATAAGAAGCCCAGGGAGCA 59.452 55.000 10.89 0.00 0.00 4.26
333 334 0.179006 CCATAAGAAGCCCAGGGAGC 60.179 60.000 10.89 0.00 0.00 4.70
334 335 1.141858 GACCATAAGAAGCCCAGGGAG 59.858 57.143 10.89 0.00 0.00 4.30
335 336 1.213296 GACCATAAGAAGCCCAGGGA 58.787 55.000 10.89 0.00 0.00 4.20
336 337 0.183731 GGACCATAAGAAGCCCAGGG 59.816 60.000 0.00 0.00 0.00 4.45
337 338 0.918983 TGGACCATAAGAAGCCCAGG 59.081 55.000 0.00 0.00 0.00 4.45
338 339 2.806945 TTGGACCATAAGAAGCCCAG 57.193 50.000 0.00 0.00 0.00 4.45
339 340 3.534357 TTTTGGACCATAAGAAGCCCA 57.466 42.857 0.00 0.00 0.00 5.36
340 341 6.538945 TTATTTTTGGACCATAAGAAGCCC 57.461 37.500 0.00 0.00 0.00 5.19
341 342 8.011844 AGATTATTTTTGGACCATAAGAAGCC 57.988 34.615 0.00 0.00 0.00 4.35
342 343 9.521503 GAAGATTATTTTTGGACCATAAGAAGC 57.478 33.333 0.00 0.00 0.00 3.86
343 344 9.722056 CGAAGATTATTTTTGGACCATAAGAAG 57.278 33.333 0.00 0.00 0.00 2.85
344 345 9.238368 ACGAAGATTATTTTTGGACCATAAGAA 57.762 29.630 0.00 0.00 0.00 2.52
345 346 8.801882 ACGAAGATTATTTTTGGACCATAAGA 57.198 30.769 0.00 0.00 0.00 2.10
347 348 9.893634 TCTACGAAGATTATTTTTGGACCATAA 57.106 29.630 0.00 0.00 0.00 1.90
349 350 8.980481 ATCTACGAAGATTATTTTTGGACCAT 57.020 30.769 0.00 0.00 39.55 3.55
363 364 7.066284 CCAATTGACCTGAAAATCTACGAAGAT 59.934 37.037 7.12 0.00 44.67 2.40
364 365 6.371548 CCAATTGACCTGAAAATCTACGAAGA 59.628 38.462 7.12 0.00 35.80 2.87
365 366 6.371548 TCCAATTGACCTGAAAATCTACGAAG 59.628 38.462 7.12 0.00 0.00 3.79
366 367 6.148811 GTCCAATTGACCTGAAAATCTACGAA 59.851 38.462 7.12 0.00 38.09 3.85
367 368 5.642063 GTCCAATTGACCTGAAAATCTACGA 59.358 40.000 7.12 0.00 38.09 3.43
368 369 5.643777 AGTCCAATTGACCTGAAAATCTACG 59.356 40.000 7.12 0.00 45.68 3.51
369 370 7.454260 AAGTCCAATTGACCTGAAAATCTAC 57.546 36.000 7.12 0.00 45.68 2.59
370 371 6.371548 CGAAGTCCAATTGACCTGAAAATCTA 59.628 38.462 7.12 0.00 45.68 1.98
371 372 5.182001 CGAAGTCCAATTGACCTGAAAATCT 59.818 40.000 7.12 0.00 45.68 2.40
372 373 5.048713 ACGAAGTCCAATTGACCTGAAAATC 60.049 40.000 7.12 0.00 45.68 2.17
373 374 4.827284 ACGAAGTCCAATTGACCTGAAAAT 59.173 37.500 7.12 0.00 45.68 1.82
374 375 4.204012 ACGAAGTCCAATTGACCTGAAAA 58.796 39.130 7.12 0.00 45.68 2.29
375 376 3.815809 ACGAAGTCCAATTGACCTGAAA 58.184 40.909 7.12 0.00 45.68 2.69
376 377 3.485463 ACGAAGTCCAATTGACCTGAA 57.515 42.857 7.12 0.00 45.68 3.02
377 378 3.485463 AACGAAGTCCAATTGACCTGA 57.515 42.857 7.12 0.00 45.00 3.86
378 379 5.682943 TTAAACGAAGTCCAATTGACCTG 57.317 39.130 7.12 0.00 45.00 4.00
379 380 8.575649 AATATTAAACGAAGTCCAATTGACCT 57.424 30.769 7.12 0.00 45.00 3.85
380 381 7.913821 GGAATATTAAACGAAGTCCAATTGACC 59.086 37.037 7.12 0.00 45.00 4.02
381 382 8.674607 AGGAATATTAAACGAAGTCCAATTGAC 58.325 33.333 7.12 3.53 45.00 3.18
382 383 8.801882 AGGAATATTAAACGAAGTCCAATTGA 57.198 30.769 7.12 0.00 45.00 2.57
383 384 9.855021 AAAGGAATATTAAACGAAGTCCAATTG 57.145 29.630 0.00 0.00 45.00 2.32
386 387 9.292195 AGAAAAGGAATATTAAACGAAGTCCAA 57.708 29.630 0.00 0.00 45.00 3.53
387 388 8.726988 CAGAAAAGGAATATTAAACGAAGTCCA 58.273 33.333 0.00 0.00 45.00 4.02
388 389 7.696872 GCAGAAAAGGAATATTAAACGAAGTCC 59.303 37.037 0.00 0.00 45.00 3.85
389 390 7.425595 CGCAGAAAAGGAATATTAAACGAAGTC 59.574 37.037 0.00 0.00 45.00 3.01
391 392 7.461107 TCGCAGAAAAGGAATATTAAACGAAG 58.539 34.615 0.00 0.00 0.00 3.79
392 393 7.367159 TCGCAGAAAAGGAATATTAAACGAA 57.633 32.000 0.00 0.00 0.00 3.85
393 394 6.971527 TCGCAGAAAAGGAATATTAAACGA 57.028 33.333 0.00 0.00 0.00 3.85
394 395 8.548721 AGTATCGCAGAAAAGGAATATTAAACG 58.451 33.333 0.00 0.00 43.58 3.60
395 396 9.865484 GAGTATCGCAGAAAAGGAATATTAAAC 57.135 33.333 0.00 0.00 43.58 2.01
396 397 9.607988 TGAGTATCGCAGAAAAGGAATATTAAA 57.392 29.630 0.00 0.00 43.58 1.52
397 398 9.607988 TTGAGTATCGCAGAAAAGGAATATTAA 57.392 29.630 0.00 0.00 43.58 1.40
398 399 9.607988 TTTGAGTATCGCAGAAAAGGAATATTA 57.392 29.630 0.00 0.00 43.58 0.98
399 400 8.506168 TTTGAGTATCGCAGAAAAGGAATATT 57.494 30.769 0.00 0.00 43.58 1.28
400 401 8.506168 TTTTGAGTATCGCAGAAAAGGAATAT 57.494 30.769 0.00 0.00 43.58 1.28
401 402 7.915293 TTTTGAGTATCGCAGAAAAGGAATA 57.085 32.000 0.00 0.00 43.58 1.75
402 403 6.817765 TTTTGAGTATCGCAGAAAAGGAAT 57.182 33.333 0.00 0.00 43.58 3.01
403 404 6.038825 TGTTTTTGAGTATCGCAGAAAAGGAA 59.961 34.615 0.00 0.00 43.58 3.36
404 405 5.529430 TGTTTTTGAGTATCGCAGAAAAGGA 59.471 36.000 0.00 0.00 43.58 3.36
405 406 5.757886 TGTTTTTGAGTATCGCAGAAAAGG 58.242 37.500 0.00 0.00 43.58 3.11
406 407 6.360681 CCTTGTTTTTGAGTATCGCAGAAAAG 59.639 38.462 0.00 0.00 43.58 2.27
407 408 6.038825 TCCTTGTTTTTGAGTATCGCAGAAAA 59.961 34.615 0.00 0.00 43.58 2.29
408 409 5.529430 TCCTTGTTTTTGAGTATCGCAGAAA 59.471 36.000 0.00 0.00 43.58 2.52
409 410 5.060506 TCCTTGTTTTTGAGTATCGCAGAA 58.939 37.500 0.00 0.00 43.58 3.02
410 411 4.637276 TCCTTGTTTTTGAGTATCGCAGA 58.363 39.130 0.00 0.00 45.75 4.26
411 412 5.356882 TTCCTTGTTTTTGAGTATCGCAG 57.643 39.130 0.00 0.00 38.61 5.18
412 413 5.759506 TTTCCTTGTTTTTGAGTATCGCA 57.240 34.783 0.00 0.00 38.61 5.10
434 435 4.081476 AGCTCAAAGCCAGTTTCTGTTTTT 60.081 37.500 0.00 0.00 43.77 1.94
435 436 3.448660 AGCTCAAAGCCAGTTTCTGTTTT 59.551 39.130 0.00 0.00 43.77 2.43
436 437 3.026694 AGCTCAAAGCCAGTTTCTGTTT 58.973 40.909 0.00 0.00 43.77 2.83
437 438 2.620585 GAGCTCAAAGCCAGTTTCTGTT 59.379 45.455 9.40 0.00 43.77 3.16
438 439 2.158696 AGAGCTCAAAGCCAGTTTCTGT 60.159 45.455 17.77 0.00 43.77 3.41
439 440 2.502295 AGAGCTCAAAGCCAGTTTCTG 58.498 47.619 17.77 0.00 43.77 3.02
440 441 2.947127 AGAGCTCAAAGCCAGTTTCT 57.053 45.000 17.77 0.00 43.77 2.52
441 442 3.006247 CCTAGAGCTCAAAGCCAGTTTC 58.994 50.000 17.77 0.00 43.77 2.78
442 443 2.373502 ACCTAGAGCTCAAAGCCAGTTT 59.626 45.455 17.77 0.00 43.77 2.66
443 444 1.981495 ACCTAGAGCTCAAAGCCAGTT 59.019 47.619 17.77 0.00 43.77 3.16
444 445 1.650528 ACCTAGAGCTCAAAGCCAGT 58.349 50.000 17.77 3.86 43.77 4.00
445 446 2.777832 AACCTAGAGCTCAAAGCCAG 57.222 50.000 17.77 3.25 43.77 4.85
446 447 4.844349 ATTAACCTAGAGCTCAAAGCCA 57.156 40.909 17.77 0.00 43.77 4.75
447 448 5.163290 ACCTATTAACCTAGAGCTCAAAGCC 60.163 44.000 17.77 0.00 43.77 4.35
448 449 5.919755 ACCTATTAACCTAGAGCTCAAAGC 58.080 41.667 17.77 0.00 42.84 3.51
449 450 8.697292 ACTAACCTATTAACCTAGAGCTCAAAG 58.303 37.037 17.77 12.57 0.00 2.77
450 451 8.605325 ACTAACCTATTAACCTAGAGCTCAAA 57.395 34.615 17.77 2.21 0.00 2.69
451 452 7.287235 GGACTAACCTATTAACCTAGAGCTCAA 59.713 40.741 17.77 0.00 35.41 3.02
452 453 6.776603 GGACTAACCTATTAACCTAGAGCTCA 59.223 42.308 17.77 0.82 35.41 4.26
453 454 6.209192 GGGACTAACCTATTAACCTAGAGCTC 59.791 46.154 5.27 5.27 38.98 4.09
454 455 6.076653 GGGACTAACCTATTAACCTAGAGCT 58.923 44.000 0.00 0.00 38.98 4.09
455 456 5.837438 TGGGACTAACCTATTAACCTAGAGC 59.163 44.000 0.00 0.00 38.98 4.09
456 457 7.909485 TTGGGACTAACCTATTAACCTAGAG 57.091 40.000 0.00 0.00 38.98 2.43
457 458 8.683776 TTTTGGGACTAACCTATTAACCTAGA 57.316 34.615 0.00 0.00 38.98 2.43
458 459 9.916360 ATTTTTGGGACTAACCTATTAACCTAG 57.084 33.333 0.00 0.00 38.98 3.02
459 460 9.910267 GATTTTTGGGACTAACCTATTAACCTA 57.090 33.333 0.00 0.00 38.98 3.08
460 461 8.395605 TGATTTTTGGGACTAACCTATTAACCT 58.604 33.333 0.00 0.00 38.98 3.50
461 462 8.584063 TGATTTTTGGGACTAACCTATTAACC 57.416 34.615 0.00 0.00 38.98 2.85
517 518 3.992943 ACCCAACAGATTCAATCCGTA 57.007 42.857 0.00 0.00 0.00 4.02
547 548 2.472488 GCACTGTCTTGCAAATTTTCCG 59.528 45.455 0.00 0.00 42.49 4.30
550 551 3.825143 AGGCACTGTCTTGCAAATTTT 57.175 38.095 0.00 0.00 44.94 1.82
565 566 6.670077 TTAATTTTCAAAAACCACAGGCAC 57.330 33.333 0.00 0.00 0.00 5.01
587 588 2.766345 TAAATACGGACTGCGGGTTT 57.234 45.000 0.00 0.00 0.00 3.27
614 615 2.592459 GCAAAATCGAATCGTTTTCCCG 59.408 45.455 11.43 5.78 30.16 5.14
647 648 6.254281 CCAGTGTAATTCTTACAAACTGGG 57.746 41.667 19.33 8.10 46.36 4.45
1014 1067 1.469335 GCTCGAATCCGGACCCCATA 61.469 60.000 6.12 0.00 36.24 2.74
1141 1200 2.555670 GGATAGGGTAGGCTGAGACGAT 60.556 54.545 0.00 0.00 0.00 3.73
1147 1206 0.260816 ACGTGGATAGGGTAGGCTGA 59.739 55.000 0.00 0.00 0.00 4.26
1149 1208 0.822532 CGACGTGGATAGGGTAGGCT 60.823 60.000 0.00 0.00 0.00 4.58
1154 1213 3.524606 CGCCGACGTGGATAGGGT 61.525 66.667 0.00 0.00 42.00 4.34
1368 1432 2.203337 GTGTTGCTGCCCTGGTCA 60.203 61.111 0.00 0.00 0.00 4.02
1396 1460 1.490574 GTATCCTCCTCACTGCCAGT 58.509 55.000 0.00 0.00 0.00 4.00
1413 1477 0.880441 TCGTCAATCCAACCGTCGTA 59.120 50.000 0.00 0.00 0.00 3.43
1425 1489 1.463674 GGAGCCACCAAATCGTCAAT 58.536 50.000 0.00 0.00 38.79 2.57
1511 1577 1.344763 ACCTCAGTGTAGACAACTGGC 59.655 52.381 3.91 0.00 32.76 4.85
1582 1648 2.282958 ACGAACGGCTCCCTCTCA 60.283 61.111 0.00 0.00 0.00 3.27
1604 1670 0.531532 CGCATCTGCTAACTCCCCTG 60.532 60.000 0.09 0.00 39.32 4.45
1730 1855 1.069765 CATCCGCGTGGCTATCCTT 59.930 57.895 11.05 0.00 34.14 3.36
1776 1901 5.985175 TCCAATTGTCATATTCCCCACTA 57.015 39.130 4.43 0.00 0.00 2.74
1811 1939 6.985117 ACATCAAACAGAAGCAAACATATGT 58.015 32.000 1.41 1.41 0.00 2.29
1885 2026 2.921634 TGTACAAAACAGCACGCAAA 57.078 40.000 0.00 0.00 33.01 3.68
1953 2095 3.245016 ACAAGAAGACCATCCTGAATGCA 60.245 43.478 0.00 0.00 33.71 3.96
2044 2195 2.512485 TTGAGTGCTGCCAACAATTG 57.488 45.000 3.24 3.24 0.00 2.32
2097 2248 1.356398 GTTACAATGGAGGAACCCCCA 59.644 52.381 0.00 0.00 38.00 4.96
2126 2277 2.611518 CTACGCTCTGAACCTTCCAAG 58.388 52.381 0.00 0.00 0.00 3.61
2168 2319 8.341173 CAACTGGAGAGCATAAAATATCTTGAC 58.659 37.037 0.00 0.00 0.00 3.18
2181 2332 5.879223 CAGAAAGTATTCAACTGGAGAGCAT 59.121 40.000 0.00 0.00 38.88 3.79
2191 2342 7.540055 CCAATTGAAGAGCAGAAAGTATTCAAC 59.460 37.037 7.12 0.00 38.89 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.