Multiple sequence alignment - TraesCS1B01G309000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G309000 chr1B 100.000 3722 0 0 1 3722 531534314 531538035 0.000000e+00 6874
1 TraesCS1B01G309000 chr1B 91.749 909 57 7 2283 3178 531650019 531650922 0.000000e+00 1247
2 TraesCS1B01G309000 chr1B 90.103 485 40 5 3238 3722 531578781 531579257 1.140000e-174 623
3 TraesCS1B01G309000 chr1B 88.060 469 44 5 3233 3693 531650944 531651408 2.530000e-151 545
4 TraesCS1B01G309000 chr1B 91.743 109 8 1 3071 3178 531578646 531578754 2.320000e-32 150
5 TraesCS1B01G309000 chr1B 100.000 61 0 0 1 61 130533498 130533558 3.040000e-21 113
6 TraesCS1B01G309000 chr1A 93.307 2495 104 21 705 3164 494023966 494026432 0.000000e+00 3624
7 TraesCS1B01G309000 chr1A 86.491 644 42 13 59 666 494023324 494023958 0.000000e+00 665
8 TraesCS1B01G309000 chr1A 85.831 367 33 7 3149 3498 494028082 494028446 4.540000e-99 372
9 TraesCS1B01G309000 chr1D 95.114 1535 60 5 705 2224 391278162 391276628 0.000000e+00 2405
10 TraesCS1B01G309000 chr1D 91.199 909 37 18 2218 3108 391276547 391275664 0.000000e+00 1195
11 TraesCS1B01G309000 chr1D 88.514 592 49 9 3113 3687 391275590 391275001 0.000000e+00 699
12 TraesCS1B01G309000 chr1D 88.675 468 32 6 3049 3498 391256521 391256057 5.430000e-153 551
13 TraesCS1B01G309000 chr1D 89.457 313 20 2 367 666 391278482 391278170 2.100000e-102 383
14 TraesCS1B01G309000 chr1D 88.444 225 16 4 86 303 391278788 391278567 2.850000e-66 263
15 TraesCS1B01G309000 chr3D 80.017 1171 194 29 1001 2160 453985593 453984452 0.000000e+00 830
16 TraesCS1B01G309000 chr3D 79.898 786 145 11 1014 1790 1993191 1992410 6.980000e-157 564
17 TraesCS1B01G309000 chr3D 82.368 397 62 7 2268 2657 453984197 453983802 4.600000e-89 339
18 TraesCS1B01G309000 chr3B 82.463 804 129 10 1001 1795 596412713 596411913 0.000000e+00 693
19 TraesCS1B01G309000 chr3B 82.620 397 61 6 2268 2657 596411314 596410919 9.900000e-91 344
20 TraesCS1B01G309000 chr3B 82.310 277 43 6 2399 2669 688159038 688159314 6.210000e-58 235
21 TraesCS1B01G309000 chr3B 82.353 272 41 6 2404 2669 737563524 737563254 2.890000e-56 230
22 TraesCS1B01G309000 chr3B 98.438 64 1 0 1 64 494072297 494072234 3.040000e-21 113
23 TraesCS1B01G309000 chr3A 81.943 803 133 10 1001 1794 595934499 595933700 0.000000e+00 669
24 TraesCS1B01G309000 chr3A 82.632 380 58 8 2285 2657 595933103 595932725 2.770000e-86 329
25 TraesCS1B01G309000 chr7A 80.315 762 134 13 1014 1764 465575 464819 2.510000e-156 562
26 TraesCS1B01G309000 chr2D 84.857 350 42 3 1015 1362 636085963 636085623 3.560000e-90 342
27 TraesCS1B01G309000 chrUn 84.022 363 49 2 1000 1362 354266472 354266825 1.280000e-89 340
28 TraesCS1B01G309000 chrUn 87.747 253 31 0 1110 1362 247902077 247902329 2.810000e-76 296
29 TraesCS1B01G309000 chr5B 82.671 277 41 7 2399 2669 610348525 610348800 4.800000e-59 239
30 TraesCS1B01G309000 chr2A 79.842 253 28 6 1015 1267 761070864 761071093 2.970000e-36 163
31 TraesCS1B01G309000 chr7B 100.000 63 0 0 1 63 702325564 702325502 2.350000e-22 117
32 TraesCS1B01G309000 chr7B 100.000 61 0 0 1 61 106108298 106108358 3.040000e-21 113
33 TraesCS1B01G309000 chr4B 100.000 61 0 0 1 61 417766885 417766825 3.040000e-21 113
34 TraesCS1B01G309000 chr2B 98.438 64 1 0 1 64 147482149 147482086 3.040000e-21 113
35 TraesCS1B01G309000 chr2B 100.000 61 0 0 1 61 550406586 550406646 3.040000e-21 113
36 TraesCS1B01G309000 chr2B 98.462 65 0 1 1 64 694070002 694070066 3.040000e-21 113
37 TraesCS1B01G309000 chr6B 98.413 63 1 0 1 63 329714086 329714148 1.090000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G309000 chr1B 531534314 531538035 3721 False 6874.000000 6874 100.0000 1 3722 1 chr1B.!!$F2 3721
1 TraesCS1B01G309000 chr1B 531650019 531651408 1389 False 896.000000 1247 89.9045 2283 3693 2 chr1B.!!$F4 1410
2 TraesCS1B01G309000 chr1B 531578646 531579257 611 False 386.500000 623 90.9230 3071 3722 2 chr1B.!!$F3 651
3 TraesCS1B01G309000 chr1A 494023324 494028446 5122 False 1553.666667 3624 88.5430 59 3498 3 chr1A.!!$F1 3439
4 TraesCS1B01G309000 chr1D 391275001 391278788 3787 True 989.000000 2405 90.5456 86 3687 5 chr1D.!!$R2 3601
5 TraesCS1B01G309000 chr3D 453983802 453985593 1791 True 584.500000 830 81.1925 1001 2657 2 chr3D.!!$R2 1656
6 TraesCS1B01G309000 chr3D 1992410 1993191 781 True 564.000000 564 79.8980 1014 1790 1 chr3D.!!$R1 776
7 TraesCS1B01G309000 chr3B 596410919 596412713 1794 True 518.500000 693 82.5415 1001 2657 2 chr3B.!!$R3 1656
8 TraesCS1B01G309000 chr3A 595932725 595934499 1774 True 499.000000 669 82.2875 1001 2657 2 chr3A.!!$R1 1656
9 TraesCS1B01G309000 chr7A 464819 465575 756 True 562.000000 562 80.3150 1014 1764 1 chr7A.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.033504 AGTCGTGCATCAAAGACCGT 59.966 50.0 0.00 0.00 34.41 4.83 F
218 219 0.040958 CTTGTCTGCAGAAACGTGCC 60.041 55.0 20.19 4.49 43.28 5.01 F
386 430 0.105964 GTCACCCCAAGTTTTTGCCC 59.894 55.0 0.00 0.00 32.79 5.36 F
698 771 0.179078 CCATCAGGTCAGCTCAGCTC 60.179 60.0 0.00 0.00 36.40 4.09 F
992 1074 0.415429 AGCCAGGGAGAGAAGGAAGA 59.585 55.0 0.00 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1765 0.251253 ACGAGACTCCGAGGGACTTT 60.251 55.000 0.00 0.0 41.55 2.66 R
1686 1777 0.540830 AGTGCTCCTTGGACGAGACT 60.541 55.000 0.00 0.0 42.15 3.24 R
2256 2442 0.795085 CGCTCCTGCTCAAGTCAAAG 59.205 55.000 0.00 0.0 36.97 2.77 R
2463 2752 1.452289 CACGTTGTGGTTCACCCCA 60.452 57.895 0.00 0.0 32.73 4.96 R
2772 3070 5.131067 AGATGTTACATCACCTAGCTACGA 58.869 41.667 24.79 0.0 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.827604 AGTCGTGCATCAAAGACCG 58.172 52.632 0.00 0.00 34.41 4.79
19 20 0.033504 AGTCGTGCATCAAAGACCGT 59.966 50.000 0.00 0.00 34.41 4.83
20 21 1.271379 AGTCGTGCATCAAAGACCGTA 59.729 47.619 0.00 0.00 34.41 4.02
21 22 2.063266 GTCGTGCATCAAAGACCGTAA 58.937 47.619 0.00 0.00 0.00 3.18
22 23 2.477375 GTCGTGCATCAAAGACCGTAAA 59.523 45.455 0.00 0.00 0.00 2.01
23 24 3.059461 GTCGTGCATCAAAGACCGTAAAA 60.059 43.478 0.00 0.00 0.00 1.52
24 25 3.560481 TCGTGCATCAAAGACCGTAAAAA 59.440 39.130 0.00 0.00 0.00 1.94
25 26 3.906008 CGTGCATCAAAGACCGTAAAAAG 59.094 43.478 0.00 0.00 0.00 2.27
26 27 4.553938 CGTGCATCAAAGACCGTAAAAAGT 60.554 41.667 0.00 0.00 0.00 2.66
27 28 4.909880 GTGCATCAAAGACCGTAAAAAGTC 59.090 41.667 0.00 0.00 0.00 3.01
28 29 4.576873 TGCATCAAAGACCGTAAAAAGTCA 59.423 37.500 0.00 0.00 35.38 3.41
29 30 5.066634 TGCATCAAAGACCGTAAAAAGTCAA 59.933 36.000 0.00 0.00 35.38 3.18
30 31 6.149633 GCATCAAAGACCGTAAAAAGTCAAT 58.850 36.000 0.00 0.00 35.38 2.57
31 32 6.305638 GCATCAAAGACCGTAAAAAGTCAATC 59.694 38.462 0.00 0.00 35.38 2.67
32 33 5.981174 TCAAAGACCGTAAAAAGTCAATCG 58.019 37.500 0.00 0.00 35.38 3.34
33 34 4.400036 AAGACCGTAAAAAGTCAATCGC 57.600 40.909 0.00 0.00 35.38 4.58
34 35 2.410730 AGACCGTAAAAAGTCAATCGCG 59.589 45.455 0.00 0.00 35.38 5.87
35 36 1.136169 ACCGTAAAAAGTCAATCGCGC 60.136 47.619 0.00 0.00 0.00 6.86
36 37 1.520368 CGTAAAAAGTCAATCGCGCC 58.480 50.000 0.00 0.00 0.00 6.53
37 38 1.127951 CGTAAAAAGTCAATCGCGCCT 59.872 47.619 0.00 0.00 0.00 5.52
38 39 2.412325 CGTAAAAAGTCAATCGCGCCTT 60.412 45.455 0.00 0.00 0.00 4.35
39 40 3.181528 CGTAAAAAGTCAATCGCGCCTTA 60.182 43.478 0.00 0.00 0.00 2.69
40 41 4.493545 CGTAAAAAGTCAATCGCGCCTTAT 60.494 41.667 0.00 0.00 0.00 1.73
41 42 5.276489 CGTAAAAAGTCAATCGCGCCTTATA 60.276 40.000 0.00 0.00 0.00 0.98
42 43 5.751243 AAAAAGTCAATCGCGCCTTATAT 57.249 34.783 0.00 0.00 0.00 0.86
43 44 5.751243 AAAAGTCAATCGCGCCTTATATT 57.249 34.783 0.00 0.00 0.00 1.28
44 45 5.751243 AAAGTCAATCGCGCCTTATATTT 57.249 34.783 0.00 0.00 0.00 1.40
45 46 5.751243 AAGTCAATCGCGCCTTATATTTT 57.249 34.783 0.00 0.00 0.00 1.82
46 47 5.095691 AGTCAATCGCGCCTTATATTTTG 57.904 39.130 0.00 0.00 0.00 2.44
47 48 4.024048 AGTCAATCGCGCCTTATATTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
48 49 3.252215 TCAATCGCGCCTTATATTTTGGG 59.748 43.478 0.00 0.00 0.00 4.12
49 50 2.623878 TCGCGCCTTATATTTTGGGA 57.376 45.000 0.00 0.00 0.00 4.37
50 51 2.920524 TCGCGCCTTATATTTTGGGAA 58.079 42.857 0.00 0.00 0.00 3.97
51 52 2.875933 TCGCGCCTTATATTTTGGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
52 53 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
53 54 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
54 55 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
55 56 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
56 57 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
57 58 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
58 59 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
59 60 5.134509 CCTTATATTTTGGGAAGGAGGGAGT 59.865 44.000 0.00 0.00 40.88 3.85
60 61 6.331837 CCTTATATTTTGGGAAGGAGGGAGTA 59.668 42.308 0.00 0.00 40.88 2.59
61 62 7.018650 CCTTATATTTTGGGAAGGAGGGAGTAT 59.981 40.741 0.00 0.00 40.88 2.12
66 67 1.969208 GGGAAGGAGGGAGTATTACGG 59.031 57.143 0.00 0.00 0.00 4.02
101 102 4.762289 AAGTCCTTTGAAGTGAGTGACT 57.238 40.909 0.00 0.00 35.94 3.41
105 106 3.706594 TCCTTTGAAGTGAGTGACTGAGT 59.293 43.478 0.00 0.00 34.02 3.41
109 110 2.035193 TGAAGTGAGTGACTGAGTGAGC 59.965 50.000 0.00 0.00 34.02 4.26
123 124 1.068748 AGTGAGCGAAACGACACGTAT 60.069 47.619 0.00 0.00 39.99 3.06
165 166 1.734117 TGCACATCAGCACGAGACG 60.734 57.895 0.00 0.00 40.11 4.18
193 194 4.770540 CCAGCACATGGGGTCATT 57.229 55.556 0.00 0.00 46.36 2.57
218 219 0.040958 CTTGTCTGCAGAAACGTGCC 60.041 55.000 20.19 4.49 43.28 5.01
222 223 0.463654 TCTGCAGAAACGTGCCAAGT 60.464 50.000 15.67 0.00 43.28 3.16
238 246 2.989055 AAGTGCAACCTCGACCCACG 62.989 60.000 0.00 0.00 37.80 4.94
240 248 4.980805 GCAACCTCGACCCACGCA 62.981 66.667 0.00 0.00 42.26 5.24
303 311 1.419012 ACCATGATCGGATGCATGAGT 59.581 47.619 21.54 16.80 43.43 3.41
304 312 2.634453 ACCATGATCGGATGCATGAGTA 59.366 45.455 21.54 0.00 43.43 2.59
305 313 3.262660 ACCATGATCGGATGCATGAGTAT 59.737 43.478 21.54 0.00 43.43 2.12
306 314 4.467438 ACCATGATCGGATGCATGAGTATA 59.533 41.667 21.54 0.00 43.43 1.47
307 315 5.048507 CCATGATCGGATGCATGAGTATAG 58.951 45.833 21.54 8.54 43.43 1.31
308 316 4.115401 TGATCGGATGCATGAGTATAGC 57.885 45.455 2.46 0.00 0.00 2.97
309 317 3.766051 TGATCGGATGCATGAGTATAGCT 59.234 43.478 2.46 0.00 0.00 3.32
310 318 3.582714 TCGGATGCATGAGTATAGCTG 57.417 47.619 2.46 0.00 0.00 4.24
311 319 2.893489 TCGGATGCATGAGTATAGCTGT 59.107 45.455 2.46 0.00 0.00 4.40
386 430 0.105964 GTCACCCCAAGTTTTTGCCC 59.894 55.000 0.00 0.00 32.79 5.36
406 450 0.984432 TCTCTGGCATGCCTCATCCA 60.984 55.000 35.53 14.98 36.94 3.41
432 487 2.671130 TGACAGCTGATACGATGCAA 57.329 45.000 23.35 0.00 0.00 4.08
434 489 3.534554 TGACAGCTGATACGATGCAATT 58.465 40.909 23.35 0.00 0.00 2.32
436 491 2.874701 ACAGCTGATACGATGCAATTCC 59.125 45.455 23.35 0.00 0.00 3.01
464 519 1.381056 ATCAGCGACCTCTCAGCCT 60.381 57.895 0.00 0.00 0.00 4.58
465 520 1.674764 ATCAGCGACCTCTCAGCCTG 61.675 60.000 0.00 0.00 0.00 4.85
467 522 1.381056 AGCGACCTCTCAGCCTGAT 60.381 57.895 0.00 0.00 0.00 2.90
485 540 2.631696 ATACGTACGTTCGCCGGTCG 62.632 60.000 27.92 7.73 42.24 4.79
528 583 2.397252 GTCTACGGACGTCGGTCG 59.603 66.667 29.12 23.26 44.39 4.79
606 662 4.681744 TCCTTCACGTACGTTGTTAAAGT 58.318 39.130 20.23 0.00 0.00 2.66
611 667 5.815850 TCACGTACGTTGTTAAAGTGTCTA 58.184 37.500 20.23 0.00 0.00 2.59
629 694 7.915930 AGTGTCTAGTCTTACTACTTACTCCA 58.084 38.462 0.00 0.00 0.00 3.86
686 759 4.838152 CCGGCCGTGTCCATCAGG 62.838 72.222 26.12 0.00 0.00 3.86
687 760 4.082523 CGGCCGTGTCCATCAGGT 62.083 66.667 19.50 0.00 35.89 4.00
688 761 2.125106 GGCCGTGTCCATCAGGTC 60.125 66.667 0.00 0.00 35.89 3.85
689 762 2.662596 GCCGTGTCCATCAGGTCA 59.337 61.111 0.00 0.00 35.89 4.02
690 763 1.448540 GCCGTGTCCATCAGGTCAG 60.449 63.158 0.00 0.00 33.56 3.51
691 764 1.448540 CCGTGTCCATCAGGTCAGC 60.449 63.158 0.00 0.00 33.56 4.26
692 765 1.593787 CGTGTCCATCAGGTCAGCT 59.406 57.895 0.00 0.00 33.56 4.24
693 766 0.459237 CGTGTCCATCAGGTCAGCTC 60.459 60.000 0.00 0.00 33.56 4.09
694 767 0.610174 GTGTCCATCAGGTCAGCTCA 59.390 55.000 0.00 0.00 33.56 4.26
695 768 0.900421 TGTCCATCAGGTCAGCTCAG 59.100 55.000 0.00 0.00 35.89 3.35
696 769 0.461693 GTCCATCAGGTCAGCTCAGC 60.462 60.000 0.00 0.00 35.89 4.26
697 770 0.616964 TCCATCAGGTCAGCTCAGCT 60.617 55.000 0.00 0.00 36.11 4.24
698 771 0.179078 CCATCAGGTCAGCTCAGCTC 60.179 60.000 0.00 0.00 36.40 4.09
699 772 0.535797 CATCAGGTCAGCTCAGCTCA 59.464 55.000 0.00 0.00 36.40 4.26
700 773 0.825410 ATCAGGTCAGCTCAGCTCAG 59.175 55.000 0.00 0.00 36.40 3.35
701 774 1.218585 CAGGTCAGCTCAGCTCAGG 59.781 63.158 0.00 0.00 36.40 3.86
702 775 1.229145 AGGTCAGCTCAGCTCAGGT 60.229 57.895 0.00 0.00 36.40 4.00
703 776 1.079266 GGTCAGCTCAGCTCAGGTG 60.079 63.158 10.95 10.95 42.29 4.00
726 799 1.342819 TGTCATGTCACACGATCCACA 59.657 47.619 0.00 0.00 0.00 4.17
727 800 1.726791 GTCATGTCACACGATCCACAC 59.273 52.381 0.00 0.00 0.00 3.82
804 882 3.009033 ACACTAGGAAAGCACATAGGCAA 59.991 43.478 0.00 0.00 35.83 4.52
812 890 1.138859 AGCACATAGGCAACGCTGATA 59.861 47.619 0.00 0.00 46.39 2.15
923 1005 2.050350 GTCCGGTGGATCGTGGAGA 61.050 63.158 0.00 0.00 32.73 3.71
986 1068 1.845627 CTTGCCAGCCAGGGAGAGAA 61.846 60.000 0.00 0.00 39.73 2.87
992 1074 0.415429 AGCCAGGGAGAGAAGGAAGA 59.585 55.000 0.00 0.00 0.00 2.87
1263 1348 2.574018 CGGGCTCATCGGCTATGGA 61.574 63.158 0.00 0.00 36.15 3.41
1455 1540 0.462759 GCCTCAGCGCCAAGTTCTAT 60.463 55.000 2.29 0.00 0.00 1.98
1674 1765 2.998097 GTGGGCAGCATAGGGTCA 59.002 61.111 0.00 0.00 0.00 4.02
1686 1777 3.801620 GGGTCAAAGTCCCTCGGA 58.198 61.111 0.00 0.00 41.58 4.55
1705 1796 0.540830 AGTCTCGTCCAAGGAGCACT 60.541 55.000 0.00 0.00 30.68 4.40
2100 2194 1.241990 TGGTCTCCCTGTCGTCTTCG 61.242 60.000 0.00 0.00 38.55 3.79
2175 2269 4.459089 GCCCACCTCACTCGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
2196 2290 2.989840 CGCTCTCTTCATCGTCACTTTT 59.010 45.455 0.00 0.00 0.00 2.27
2256 2442 6.702716 AGTACTAGGTTCTAACTGAGATGC 57.297 41.667 0.00 0.00 32.88 3.91
2463 2752 1.676006 CTGTTCGGCACCAAGAACTTT 59.324 47.619 9.30 0.00 44.95 2.66
2614 2912 2.041928 CCTTCCTCCTCTGGGGCT 59.958 66.667 0.00 0.00 34.39 5.19
2619 2917 1.920325 CCTCCTCTGGGGCTTCACA 60.920 63.158 0.00 0.00 34.39 3.58
2761 3059 5.697473 TGGCACAATCGAGTGAATAAAAA 57.303 34.783 21.18 0.00 42.05 1.94
2991 3302 6.973474 CACGGTTTGTTTGAATAAAGTTACCA 59.027 34.615 0.00 0.00 0.00 3.25
3020 3331 9.965824 GAATTCTCTGTTAAAATGGAACTTTGA 57.034 29.630 0.00 0.00 0.00 2.69
3022 3333 9.918630 ATTCTCTGTTAAAATGGAACTTTGATG 57.081 29.630 0.00 0.00 0.00 3.07
3023 3334 7.370383 TCTCTGTTAAAATGGAACTTTGATGC 58.630 34.615 0.00 0.00 0.00 3.91
3095 3417 7.394816 AGTACATCTACCAGCAAGTTGTTATT 58.605 34.615 4.48 0.00 31.23 1.40
3152 3543 6.407074 CGATATACCAAAGGGAGTTCAGTTCT 60.407 42.308 0.00 0.00 38.05 3.01
3155 3546 2.880890 CCAAAGGGAGTTCAGTTCTGTG 59.119 50.000 0.00 0.00 35.59 3.66
3159 5215 3.545703 AGGGAGTTCAGTTCTGTGTTTG 58.454 45.455 0.00 0.00 0.00 2.93
3178 5234 1.134848 TGTTTTGTCCTTGCACCTTGC 60.135 47.619 0.00 0.00 45.29 4.01
3194 5250 3.391296 ACCTTGCAGTCTTCAGGTTTCTA 59.609 43.478 0.00 0.00 0.00 2.10
3229 5286 3.491447 GGATGATGCATTTGCCCTTGTAC 60.491 47.826 0.00 0.00 41.18 2.90
3230 5287 2.523245 TGATGCATTTGCCCTTGTACA 58.477 42.857 0.00 0.00 41.18 2.90
3231 5288 3.098377 TGATGCATTTGCCCTTGTACAT 58.902 40.909 0.00 0.00 41.18 2.29
3320 5393 3.538634 AGTTTTACCCGGTCTATCAGC 57.461 47.619 0.00 0.00 0.00 4.26
3432 5505 3.374402 CGAGGGTGGAGTGCGACT 61.374 66.667 0.00 0.00 0.00 4.18
3521 5595 5.471797 ACAATGAACGGTTACACATGAATGA 59.528 36.000 0.00 0.00 0.00 2.57
3537 5611 7.446319 CACATGAATGAGCCTCTAATTAATGGA 59.554 37.037 0.00 0.00 30.65 3.41
3577 5651 6.965607 TCGGAGGAAAATTATCCCTTAACTT 58.034 36.000 0.00 0.00 40.59 2.66
3580 5654 8.618677 CGGAGGAAAATTATCCCTTAACTTAAC 58.381 37.037 0.00 0.00 40.59 2.01
3590 5664 9.662947 TTATCCCTTAACTTAACTTACTGCTTC 57.337 33.333 0.00 0.00 0.00 3.86
3598 5672 6.346096 ACTTAACTTACTGCTTCAGTCACAA 58.654 36.000 2.39 0.00 41.21 3.33
3693 5775 8.713708 TTGAAAATGTATGGTTTCTTAGGGAA 57.286 30.769 0.00 0.00 35.26 3.97
3694 5776 8.893563 TGAAAATGTATGGTTTCTTAGGGAAT 57.106 30.769 0.00 0.00 35.26 3.01
3702 5784 5.812286 TGGTTTCTTAGGGAATGAACTACC 58.188 41.667 0.00 0.00 33.53 3.18
3714 5796 3.695830 TGAACTACCTGGAATGACCAC 57.304 47.619 0.00 0.00 44.64 4.16
3716 5798 3.007940 TGAACTACCTGGAATGACCACAG 59.992 47.826 0.00 0.00 44.64 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.855531 ACTTTTTACGGTCTTTGATGCAC 58.144 39.130 0.00 0.00 0.00 4.57
5 6 4.576873 TGACTTTTTACGGTCTTTGATGCA 59.423 37.500 0.00 0.00 34.01 3.96
6 7 5.103290 TGACTTTTTACGGTCTTTGATGC 57.897 39.130 0.00 0.00 34.01 3.91
7 8 6.519761 CGATTGACTTTTTACGGTCTTTGATG 59.480 38.462 0.00 0.00 34.01 3.07
8 9 6.599437 CGATTGACTTTTTACGGTCTTTGAT 58.401 36.000 0.00 0.00 34.01 2.57
9 10 5.559417 GCGATTGACTTTTTACGGTCTTTGA 60.559 40.000 0.00 0.00 34.01 2.69
10 11 4.611366 GCGATTGACTTTTTACGGTCTTTG 59.389 41.667 0.00 0.00 34.01 2.77
11 12 4.609783 CGCGATTGACTTTTTACGGTCTTT 60.610 41.667 0.00 0.00 34.01 2.52
12 13 3.120786 CGCGATTGACTTTTTACGGTCTT 60.121 43.478 0.00 0.00 34.01 3.01
13 14 2.410730 CGCGATTGACTTTTTACGGTCT 59.589 45.455 0.00 0.00 34.01 3.85
14 15 2.754478 CGCGATTGACTTTTTACGGTC 58.246 47.619 0.00 0.00 0.00 4.79
15 16 1.136169 GCGCGATTGACTTTTTACGGT 60.136 47.619 12.10 0.00 0.00 4.83
16 17 1.520368 GCGCGATTGACTTTTTACGG 58.480 50.000 12.10 0.00 0.00 4.02
17 18 1.127951 AGGCGCGATTGACTTTTTACG 59.872 47.619 12.10 0.00 0.00 3.18
18 19 2.894307 AGGCGCGATTGACTTTTTAC 57.106 45.000 12.10 0.00 0.00 2.01
19 20 6.854496 ATATAAGGCGCGATTGACTTTTTA 57.146 33.333 12.10 0.00 0.00 1.52
20 21 5.751243 ATATAAGGCGCGATTGACTTTTT 57.249 34.783 12.10 0.00 0.00 1.94
21 22 5.751243 AATATAAGGCGCGATTGACTTTT 57.249 34.783 12.10 3.43 0.00 2.27
22 23 5.751243 AAATATAAGGCGCGATTGACTTT 57.249 34.783 12.10 0.00 0.00 2.66
23 24 5.505654 CCAAAATATAAGGCGCGATTGACTT 60.506 40.000 12.10 7.96 0.00 3.01
24 25 4.024048 CCAAAATATAAGGCGCGATTGACT 60.024 41.667 12.10 0.00 0.00 3.41
25 26 4.219033 CCAAAATATAAGGCGCGATTGAC 58.781 43.478 12.10 0.00 0.00 3.18
26 27 3.252215 CCCAAAATATAAGGCGCGATTGA 59.748 43.478 12.10 0.00 0.00 2.57
27 28 3.252215 TCCCAAAATATAAGGCGCGATTG 59.748 43.478 12.10 0.00 0.00 2.67
28 29 3.482436 TCCCAAAATATAAGGCGCGATT 58.518 40.909 12.10 6.21 0.00 3.34
29 30 3.134574 TCCCAAAATATAAGGCGCGAT 57.865 42.857 12.10 0.00 0.00 4.58
30 31 2.623878 TCCCAAAATATAAGGCGCGA 57.376 45.000 12.10 0.00 0.00 5.87
31 32 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
32 33 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
33 34 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
34 35 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
35 36 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
36 37 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
37 38 7.964730 ATACTCCCTCCTTCCCAAAATATAA 57.035 36.000 0.00 0.00 0.00 0.98
38 39 7.964730 AATACTCCCTCCTTCCCAAAATATA 57.035 36.000 0.00 0.00 0.00 0.86
39 40 6.865651 AATACTCCCTCCTTCCCAAAATAT 57.134 37.500 0.00 0.00 0.00 1.28
40 41 6.183361 CGTAATACTCCCTCCTTCCCAAAATA 60.183 42.308 0.00 0.00 0.00 1.40
41 42 5.397559 CGTAATACTCCCTCCTTCCCAAAAT 60.398 44.000 0.00 0.00 0.00 1.82
42 43 4.080751 CGTAATACTCCCTCCTTCCCAAAA 60.081 45.833 0.00 0.00 0.00 2.44
43 44 3.453353 CGTAATACTCCCTCCTTCCCAAA 59.547 47.826 0.00 0.00 0.00 3.28
44 45 3.036091 CGTAATACTCCCTCCTTCCCAA 58.964 50.000 0.00 0.00 0.00 4.12
45 46 2.674420 CGTAATACTCCCTCCTTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
46 47 1.969208 CCGTAATACTCCCTCCTTCCC 59.031 57.143 0.00 0.00 0.00 3.97
47 48 1.969208 CCCGTAATACTCCCTCCTTCC 59.031 57.143 0.00 0.00 0.00 3.46
48 49 2.954792 TCCCGTAATACTCCCTCCTTC 58.045 52.381 0.00 0.00 0.00 3.46
49 50 3.409804 TTCCCGTAATACTCCCTCCTT 57.590 47.619 0.00 0.00 0.00 3.36
50 51 3.508426 GATTCCCGTAATACTCCCTCCT 58.492 50.000 0.00 0.00 0.00 3.69
51 52 2.566279 GGATTCCCGTAATACTCCCTCC 59.434 54.545 0.00 0.00 0.00 4.30
52 53 3.236896 TGGATTCCCGTAATACTCCCTC 58.763 50.000 0.00 0.00 34.29 4.30
53 54 3.339713 TGGATTCCCGTAATACTCCCT 57.660 47.619 0.00 0.00 34.29 4.20
54 55 3.390311 ACTTGGATTCCCGTAATACTCCC 59.610 47.826 0.00 0.00 34.29 4.30
55 56 4.629092 GACTTGGATTCCCGTAATACTCC 58.371 47.826 0.00 0.00 34.29 3.85
56 57 4.037208 TCGACTTGGATTCCCGTAATACTC 59.963 45.833 0.00 0.00 34.29 2.59
57 58 3.956199 TCGACTTGGATTCCCGTAATACT 59.044 43.478 0.00 0.00 34.29 2.12
58 59 4.311816 TCGACTTGGATTCCCGTAATAC 57.688 45.455 0.00 0.00 34.29 1.89
59 60 5.105228 ACTTTCGACTTGGATTCCCGTAATA 60.105 40.000 0.00 0.00 34.29 0.98
60 61 3.899052 TTCGACTTGGATTCCCGTAAT 57.101 42.857 0.00 0.00 34.29 1.89
61 62 3.007182 ACTTTCGACTTGGATTCCCGTAA 59.993 43.478 0.00 0.00 34.29 3.18
66 67 3.336138 AGGACTTTCGACTTGGATTCC 57.664 47.619 0.00 0.00 0.00 3.01
101 102 0.933047 CGTGTCGTTTCGCTCACTCA 60.933 55.000 12.07 0.00 32.83 3.41
105 106 1.069091 TCATACGTGTCGTTTCGCTCA 60.069 47.619 0.00 0.00 41.54 4.26
109 110 2.344441 AGCAATCATACGTGTCGTTTCG 59.656 45.455 0.00 0.00 41.54 3.46
123 124 4.211125 TGGGTTAAACTTGTCAGCAATCA 58.789 39.130 0.00 0.00 33.65 2.57
159 160 0.038618 TGGACATGTGTTCCGTCTCG 60.039 55.000 1.15 0.00 0.00 4.04
165 166 1.538047 ATGTGCTGGACATGTGTTCC 58.462 50.000 14.25 0.00 44.12 3.62
189 190 4.341366 TCTGCAGACAAGAAGACAATGA 57.659 40.909 13.74 0.00 0.00 2.57
193 194 2.866156 CGTTTCTGCAGACAAGAAGACA 59.134 45.455 18.03 0.00 0.00 3.41
218 219 1.227823 TGGGTCGAGGTTGCACTTG 60.228 57.895 0.00 0.00 0.00 3.16
222 223 4.980805 GCGTGGGTCGAGGTTGCA 62.981 66.667 0.00 0.00 42.86 4.08
228 229 1.153823 CCTAACTGCGTGGGTCGAG 60.154 63.158 0.00 0.00 42.86 4.04
240 248 2.301346 GTATTGCATGCAGGCCTAACT 58.699 47.619 22.16 3.25 0.00 2.24
242 250 2.433662 TGTATTGCATGCAGGCCTAA 57.566 45.000 22.16 9.92 0.00 2.69
303 311 3.187842 CGTCGTGTGCCTATACAGCTATA 59.812 47.826 0.00 0.00 0.00 1.31
304 312 2.031069 CGTCGTGTGCCTATACAGCTAT 60.031 50.000 0.00 0.00 0.00 2.97
305 313 1.332686 CGTCGTGTGCCTATACAGCTA 59.667 52.381 0.00 0.00 0.00 3.32
306 314 0.100682 CGTCGTGTGCCTATACAGCT 59.899 55.000 0.00 0.00 0.00 4.24
307 315 0.179145 ACGTCGTGTGCCTATACAGC 60.179 55.000 0.00 0.00 0.00 4.40
308 316 1.400846 AGACGTCGTGTGCCTATACAG 59.599 52.381 10.46 0.00 0.00 2.74
309 317 1.456296 AGACGTCGTGTGCCTATACA 58.544 50.000 10.46 0.00 0.00 2.29
310 318 2.352651 TGTAGACGTCGTGTGCCTATAC 59.647 50.000 10.46 4.50 0.00 1.47
311 319 2.610833 CTGTAGACGTCGTGTGCCTATA 59.389 50.000 10.46 0.00 0.00 1.31
349 357 1.264749 ACTGCATCAGGGCTACCGAA 61.265 55.000 0.00 0.00 43.47 4.30
353 361 0.462759 GGTGACTGCATCAGGGCTAC 60.463 60.000 0.00 0.00 38.28 3.58
359 367 0.037303 ACTTGGGGTGACTGCATCAG 59.963 55.000 0.00 0.00 38.28 2.90
386 430 0.250381 GGATGAGGCATGCCAGAGAG 60.250 60.000 37.18 0.00 38.92 3.20
436 491 0.102120 GGTCGCTGATCCAGAGAGTG 59.898 60.000 0.75 0.00 40.60 3.51
464 519 1.062365 CCGGCGAACGTACGTATCA 59.938 57.895 23.12 0.00 42.24 2.15
465 520 0.925721 GACCGGCGAACGTACGTATC 60.926 60.000 23.12 18.61 42.24 2.24
467 522 2.478746 GACCGGCGAACGTACGTA 59.521 61.111 23.12 0.00 42.24 3.57
516 571 3.161405 CGTTTCGACCGACGTCCG 61.161 66.667 10.58 8.21 43.13 4.79
548 603 1.015109 CTGGCTCACATGCACTCATC 58.985 55.000 0.00 0.00 34.04 2.92
606 662 7.609532 GGTTGGAGTAAGTAGTAAGACTAGACA 59.390 40.741 0.00 0.00 30.12 3.41
611 667 5.479724 GGTGGTTGGAGTAAGTAGTAAGACT 59.520 44.000 0.00 0.00 0.00 3.24
623 688 5.055265 TGAAAAGATTGGTGGTTGGAGTA 57.945 39.130 0.00 0.00 0.00 2.59
629 694 4.429108 CAACGTTGAAAAGATTGGTGGTT 58.571 39.130 23.90 0.00 0.00 3.67
669 742 4.838152 CCTGATGGACACGGCCGG 62.838 72.222 31.76 20.69 34.57 6.13
670 743 4.082523 ACCTGATGGACACGGCCG 62.083 66.667 26.86 26.86 37.04 6.13
672 745 1.448540 CTGACCTGATGGACACGGC 60.449 63.158 0.00 0.00 34.54 5.68
673 746 1.448540 GCTGACCTGATGGACACGG 60.449 63.158 0.00 0.00 34.54 4.94
674 747 0.459237 GAGCTGACCTGATGGACACG 60.459 60.000 0.00 0.00 34.54 4.49
675 748 0.610174 TGAGCTGACCTGATGGACAC 59.390 55.000 0.00 0.00 34.54 3.67
676 749 0.900421 CTGAGCTGACCTGATGGACA 59.100 55.000 0.00 0.00 36.63 4.02
677 750 0.461693 GCTGAGCTGACCTGATGGAC 60.462 60.000 0.00 0.00 37.04 4.02
678 751 0.616964 AGCTGAGCTGACCTGATGGA 60.617 55.000 5.97 0.00 37.57 3.41
679 752 0.179078 GAGCTGAGCTGACCTGATGG 60.179 60.000 13.71 0.00 39.88 3.51
680 753 0.535797 TGAGCTGAGCTGACCTGATG 59.464 55.000 13.71 0.00 39.88 3.07
681 754 0.825410 CTGAGCTGAGCTGACCTGAT 59.175 55.000 13.71 0.00 39.88 2.90
682 755 1.256361 CCTGAGCTGAGCTGACCTGA 61.256 60.000 13.71 0.00 39.88 3.86
683 756 1.218585 CCTGAGCTGAGCTGACCTG 59.781 63.158 13.71 1.23 39.88 4.00
684 757 1.229145 ACCTGAGCTGAGCTGACCT 60.229 57.895 13.71 0.00 39.88 3.85
685 758 1.079266 CACCTGAGCTGAGCTGACC 60.079 63.158 13.71 0.00 39.88 4.02
686 759 1.741032 GCACCTGAGCTGAGCTGAC 60.741 63.158 13.71 0.00 39.88 3.51
687 760 1.551019 ATGCACCTGAGCTGAGCTGA 61.551 55.000 13.71 0.99 39.88 4.26
688 761 1.078356 ATGCACCTGAGCTGAGCTG 60.078 57.895 13.71 0.00 39.88 4.24
689 762 1.078356 CATGCACCTGAGCTGAGCT 60.078 57.895 6.69 6.69 43.88 4.09
690 763 1.367599 GACATGCACCTGAGCTGAGC 61.368 60.000 0.00 0.00 34.99 4.26
691 764 0.036671 TGACATGCACCTGAGCTGAG 60.037 55.000 0.00 0.00 34.99 3.35
692 765 0.616891 ATGACATGCACCTGAGCTGA 59.383 50.000 0.00 0.00 34.99 4.26
693 766 0.733150 CATGACATGCACCTGAGCTG 59.267 55.000 1.71 0.00 34.99 4.24
694 767 0.327259 ACATGACATGCACCTGAGCT 59.673 50.000 15.49 0.00 34.99 4.09
695 768 0.731417 GACATGACATGCACCTGAGC 59.269 55.000 15.49 0.00 0.00 4.26
696 769 1.736126 GTGACATGACATGCACCTGAG 59.264 52.381 22.16 0.00 33.90 3.35
697 770 1.072015 TGTGACATGACATGCACCTGA 59.928 47.619 26.19 14.20 36.87 3.86
698 771 1.198408 GTGTGACATGACATGCACCTG 59.802 52.381 26.19 5.52 36.87 4.00
699 772 1.527034 GTGTGACATGACATGCACCT 58.473 50.000 26.19 7.90 36.87 4.00
700 773 0.166597 CGTGTGACATGACATGCACC 59.833 55.000 26.19 19.89 36.87 5.01
701 774 1.147473 TCGTGTGACATGACATGCAC 58.853 50.000 24.24 24.24 37.61 4.57
702 775 2.001872 GATCGTGTGACATGACATGCA 58.998 47.619 15.49 11.25 31.87 3.96
703 776 1.328680 GGATCGTGTGACATGACATGC 59.671 52.381 15.49 8.84 31.87 4.06
726 799 2.158204 AGGTTATATAGTGCTCCGGGGT 60.158 50.000 1.62 0.00 0.00 4.95
727 800 2.233922 CAGGTTATATAGTGCTCCGGGG 59.766 54.545 0.00 0.00 0.00 5.73
804 882 4.277174 GGATCGATCAGGATATATCAGCGT 59.723 45.833 25.93 0.81 0.00 5.07
812 890 4.280425 CGATGGATGGATCGATCAGGATAT 59.720 45.833 25.93 14.09 46.72 1.63
923 1005 1.153509 GGCGTGGTACTTATGCGGT 60.154 57.895 8.18 0.00 0.00 5.68
1209 1294 4.154347 GCCACGAGCCAGAGAGGG 62.154 72.222 0.00 0.00 38.09 4.30
1252 1337 1.689273 GAACTGGACTCCATAGCCGAT 59.311 52.381 0.00 0.00 30.82 4.18
1455 1540 1.895020 GCGTGTCCTCCATGGTGGTA 61.895 60.000 27.90 17.53 39.03 3.25
1496 1581 2.202756 GCAGGTACTTCTCGGCCG 60.203 66.667 22.12 22.12 34.60 6.13
1602 1693 0.953960 ACATGGCGAAGAACCCGAAC 60.954 55.000 0.00 0.00 0.00 3.95
1674 1765 0.251253 ACGAGACTCCGAGGGACTTT 60.251 55.000 0.00 0.00 41.55 2.66
1686 1777 0.540830 AGTGCTCCTTGGACGAGACT 60.541 55.000 0.00 0.00 42.15 3.24
1705 1796 3.443099 CATCACGTAGAGGCTGATCAA 57.557 47.619 0.00 0.00 0.00 2.57
1881 1972 0.930726 TCTCCTCCTCCTCCTCCTTC 59.069 60.000 0.00 0.00 0.00 3.46
1954 2048 1.248785 AAGTCGAGCCTCCGTAGCAA 61.249 55.000 0.00 0.00 0.00 3.91
2100 2194 2.810012 GCGGCCGAAGAATCCGAAC 61.810 63.158 33.48 1.41 45.53 3.95
2175 2269 2.270275 AAGTGACGATGAAGAGAGCG 57.730 50.000 0.00 0.00 0.00 5.03
2231 2415 8.221944 AGCATCTCAGTTAGAACCTAGTACTAT 58.778 37.037 2.33 0.00 37.89 2.12
2248 2432 3.072211 TGCTCAAGTCAAAGCATCTCAG 58.928 45.455 0.00 0.00 43.30 3.35
2250 2434 2.419324 CCTGCTCAAGTCAAAGCATCTC 59.581 50.000 0.00 0.00 46.69 2.75
2256 2442 0.795085 CGCTCCTGCTCAAGTCAAAG 59.205 55.000 0.00 0.00 36.97 2.77
2463 2752 1.452289 CACGTTGTGGTTCACCCCA 60.452 57.895 0.00 0.00 32.73 4.96
2737 3035 5.895636 TTTATTCACTCGATTGTGCCATT 57.104 34.783 2.44 0.00 37.81 3.16
2762 3060 6.282199 TCACCTAGCTACGAAGATCTTTTT 57.718 37.500 9.87 2.23 0.00 1.94
2772 3070 5.131067 AGATGTTACATCACCTAGCTACGA 58.869 41.667 24.79 0.00 0.00 3.43
2991 3302 8.697507 AGTTCCATTTTAACAGAGAATTCACT 57.302 30.769 8.44 3.57 0.00 3.41
3020 3331 2.730928 CGATTCGCCAAAAACTTTGCAT 59.269 40.909 0.00 0.00 0.00 3.96
3021 3332 2.123342 CGATTCGCCAAAAACTTTGCA 58.877 42.857 0.00 0.00 0.00 4.08
3022 3333 2.124122 ACGATTCGCCAAAAACTTTGC 58.876 42.857 5.86 0.00 0.00 3.68
3023 3334 2.400408 CGACGATTCGCCAAAAACTTTG 59.600 45.455 5.86 0.00 38.71 2.77
3033 3353 0.784778 GATTGGATCGACGATTCGCC 59.215 55.000 12.40 9.33 45.46 5.54
3095 3417 5.295787 CGAACAAACTGCCTATTTATGCCTA 59.704 40.000 0.00 0.00 0.00 3.93
3152 3543 3.321497 GTGCAAGGACAAAACAAACACA 58.679 40.909 0.00 0.00 0.00 3.72
3155 3546 3.245518 AGGTGCAAGGACAAAACAAAC 57.754 42.857 0.00 0.00 0.00 2.93
3159 5215 1.570813 GCAAGGTGCAAGGACAAAAC 58.429 50.000 0.00 0.00 44.26 2.43
3178 5234 4.686554 CCGAGTTTAGAAACCTGAAGACTG 59.313 45.833 1.52 0.00 39.71 3.51
3194 5250 2.880890 GCATCATCCATTAGCCGAGTTT 59.119 45.455 0.00 0.00 0.00 2.66
3229 5286 7.926018 TGTAGGATATATATGTTGGCGCTTATG 59.074 37.037 7.64 0.00 0.00 1.90
3230 5287 8.018537 TGTAGGATATATATGTTGGCGCTTAT 57.981 34.615 7.64 0.00 0.00 1.73
3231 5288 7.412853 TGTAGGATATATATGTTGGCGCTTA 57.587 36.000 7.64 0.00 0.00 3.09
3286 5359 5.584442 GGGTAAAACTTTTGTGTTGATCGT 58.416 37.500 0.00 0.00 31.28 3.73
3320 5393 3.131933 AGCCACAGCAGAGTATTAGAGTG 59.868 47.826 0.00 0.00 43.56 3.51
3432 5505 8.800370 TTCATGAAACTATTAACATGTGGCTA 57.200 30.769 5.45 0.00 40.32 3.93
3484 5558 3.815401 CGTTCATTGTTGGAAAGGTCTCT 59.185 43.478 0.00 0.00 0.00 3.10
3485 5559 3.058224 CCGTTCATTGTTGGAAAGGTCTC 60.058 47.826 0.00 0.00 38.55 3.36
3537 5611 5.446860 TCCTCCGAGTCAACATAGAACTAT 58.553 41.667 0.00 0.00 0.00 2.12
3554 5628 8.618677 GTTAAGTTAAGGGATAATTTTCCTCCG 58.381 37.037 13.76 0.00 35.97 4.63
3577 5651 7.618502 TTTTTGTGACTGAAGCAGTAAGTTA 57.381 32.000 0.00 0.00 45.44 2.24
3598 5672 7.396540 ACAGAAGAGTGTGATCAAACTTTTT 57.603 32.000 19.67 16.16 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.