Multiple sequence alignment - TraesCS1B01G308600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G308600 chr1B 100.000 5522 0 0 1 5522 531198202 531203723 0.000000e+00 10198.0
1 TraesCS1B01G308600 chr1B 93.684 190 10 2 1 190 606308379 606308566 3.260000e-72 283.0
2 TraesCS1B01G308600 chr1B 92.373 118 7 2 5400 5515 58710560 58710677 3.420000e-37 167.0
3 TraesCS1B01G308600 chr1B 94.253 87 4 1 192 277 18427841 18427755 1.250000e-26 132.0
4 TraesCS1B01G308600 chr1B 96.875 32 1 0 4067 4098 531202238 531202269 3.000000e-03 54.7
5 TraesCS1B01G308600 chr1B 96.875 32 1 0 4037 4068 531202268 531202299 3.000000e-03 54.7
6 TraesCS1B01G308600 chr1A 92.522 3129 132 38 1757 4848 493817528 493820591 0.000000e+00 4388.0
7 TraesCS1B01G308600 chr1A 83.616 1062 67 38 322 1333 493815273 493816277 0.000000e+00 898.0
8 TraesCS1B01G308600 chr1A 88.350 515 19 14 4891 5401 493820593 493821070 1.030000e-161 580.0
9 TraesCS1B01G308600 chr1A 96.176 340 10 2 1330 1669 493817178 493817514 2.250000e-153 553.0
10 TraesCS1B01G308600 chr1A 92.746 193 14 0 1 193 534773364 534773556 4.210000e-71 279.0
11 TraesCS1B01G308600 chr1A 89.922 129 8 5 5394 5519 569891937 569891811 1.590000e-35 161.0
12 TraesCS1B01G308600 chr1A 88.776 98 10 1 4808 4905 563590839 563590743 9.720000e-23 119.0
13 TraesCS1B01G308600 chr1A 96.875 32 1 0 4067 4098 493819780 493819811 3.000000e-03 54.7
14 TraesCS1B01G308600 chr1D 96.044 1643 60 1 3205 4847 391324135 391322498 0.000000e+00 2669.0
15 TraesCS1B01G308600 chr1D 97.333 975 24 2 2194 3168 391325259 391324287 0.000000e+00 1655.0
16 TraesCS1B01G308600 chr1D 88.498 1052 48 26 322 1312 391327797 391326758 0.000000e+00 1205.0
17 TraesCS1B01G308600 chr1D 97.241 580 13 3 1502 2078 391325831 391325252 0.000000e+00 979.0
18 TraesCS1B01G308600 chr1D 94.140 529 19 6 4878 5401 391320284 391319763 0.000000e+00 795.0
19 TraesCS1B01G308600 chr1D 95.714 140 6 0 1330 1469 391325971 391325832 5.570000e-55 226.0
20 TraesCS1B01G308600 chr1D 93.277 119 6 2 5398 5514 222028424 222028542 2.040000e-39 174.0
21 TraesCS1B01G308600 chr1D 93.182 88 5 1 192 278 371663387 371663300 1.610000e-25 128.0
22 TraesCS1B01G308600 chr3D 85.243 515 45 13 4904 5403 426443349 426442851 8.260000e-138 501.0
23 TraesCS1B01G308600 chr3D 84.100 522 46 18 4903 5403 531364758 531365263 2.330000e-128 470.0
24 TraesCS1B01G308600 chr3D 93.939 99 3 3 902 998 454002723 454002626 4.460000e-31 147.0
25 TraesCS1B01G308600 chr3D 76.981 265 47 9 3588 3839 453999207 453998944 7.460000e-29 139.0
26 TraesCS1B01G308600 chr3D 85.185 108 16 0 1542 1649 454001478 454001371 1.630000e-20 111.0
27 TraesCS1B01G308600 chr3B 83.619 525 46 16 4903 5403 702689527 702690035 1.810000e-124 457.0
28 TraesCS1B01G308600 chr3B 91.667 120 8 2 5398 5515 201343576 201343457 1.230000e-36 165.0
29 TraesCS1B01G308600 chr3B 94.949 99 2 3 902 998 596433889 596433792 9.580000e-33 152.0
30 TraesCS1B01G308600 chr3B 76.226 265 49 9 3588 3839 596430325 596430062 1.610000e-25 128.0
31 TraesCS1B01G308600 chr3B 90.625 96 6 2 4808 4900 731134811 731134716 2.090000e-24 124.0
32 TraesCS1B01G308600 chr7D 93.116 276 15 3 3796 4067 314650299 314650574 8.620000e-108 401.0
33 TraesCS1B01G308600 chr7D 95.789 190 7 1 1 190 66990773 66990585 6.950000e-79 305.0
34 TraesCS1B01G308600 chr7D 93.548 155 9 1 2557 2710 314649839 314649993 4.300000e-56 230.0
35 TraesCS1B01G308600 chr7D 92.941 85 6 0 2823 2907 314649992 314650076 2.090000e-24 124.0
36 TraesCS1B01G308600 chr4D 82.845 478 50 18 4903 5365 12420408 12419948 3.100000e-107 399.0
37 TraesCS1B01G308600 chr3A 85.492 386 25 12 5031 5403 665964246 665964613 1.880000e-99 374.0
38 TraesCS1B01G308600 chr3A 94.949 99 2 3 902 998 595951633 595951536 9.580000e-33 152.0
39 TraesCS1B01G308600 chr3A 72.542 590 110 35 3272 3839 595948344 595947785 1.600000e-30 145.0
40 TraesCS1B01G308600 chr7B 95.812 191 8 0 1 191 432217659 432217469 5.370000e-80 309.0
41 TraesCS1B01G308600 chr7B 94.186 86 5 0 192 277 577675305 577675220 1.250000e-26 132.0
42 TraesCS1B01G308600 chr5A 95.288 191 9 0 1 191 475304348 475304158 2.500000e-78 303.0
43 TraesCS1B01G308600 chr5A 82.895 152 17 6 5246 5396 450419518 450419375 1.610000e-25 128.0
44 TraesCS1B01G308600 chr6A 93.814 194 8 2 4 193 559501557 559501364 7.000000e-74 289.0
45 TraesCS1B01G308600 chr2D 94.241 191 8 1 1 191 635260346 635260159 7.000000e-74 289.0
46 TraesCS1B01G308600 chr2D 93.299 194 10 3 1 193 562912046 562911855 3.260000e-72 283.0
47 TraesCS1B01G308600 chr2D 92.437 119 7 2 5400 5516 155565368 155565250 9.510000e-38 169.0
48 TraesCS1B01G308600 chr2D 87.736 106 5 5 4801 4905 376700834 376700736 3.490000e-22 117.0
49 TraesCS1B01G308600 chr5D 85.405 185 16 10 11 190 114465151 114464973 1.220000e-41 182.0
50 TraesCS1B01G308600 chr5D 92.562 121 7 2 5400 5518 47538620 47538500 7.350000e-39 172.0
51 TraesCS1B01G308600 chr5D 93.966 116 4 2 5400 5514 382258533 382258646 7.350000e-39 172.0
52 TraesCS1B01G308600 chr5D 94.253 87 5 0 192 278 510557580 510557494 3.470000e-27 134.0
53 TraesCS1B01G308600 chr5D 90.526 95 4 3 4808 4901 491004602 491004692 2.700000e-23 121.0
54 TraesCS1B01G308600 chr5D 85.841 113 9 6 4795 4905 491004711 491004604 4.520000e-21 113.0
55 TraesCS1B01G308600 chr5B 92.437 119 7 2 5399 5515 594746994 594747112 9.510000e-38 169.0
56 TraesCS1B01G308600 chr5B 94.318 88 5 0 192 279 635097840 635097753 9.650000e-28 135.0
57 TraesCS1B01G308600 chr6B 91.667 120 8 2 5399 5516 704015380 704015499 1.230000e-36 165.0
58 TraesCS1B01G308600 chr6B 94.318 88 5 0 192 279 45771255 45771168 9.650000e-28 135.0
59 TraesCS1B01G308600 chr6B 94.318 88 4 1 192 278 624792717 624792804 3.470000e-27 134.0
60 TraesCS1B01G308600 chr4B 91.262 103 8 1 4803 4905 544445273 544445374 7.460000e-29 139.0
61 TraesCS1B01G308600 chr4B 88.776 98 9 1 4808 4905 11736926 11736831 9.720000e-23 119.0
62 TraesCS1B01G308600 chr2B 94.253 87 4 1 192 277 90193986 90193900 1.250000e-26 132.0
63 TraesCS1B01G308600 chr2B 92.391 92 5 2 192 282 18143972 18144062 4.490000e-26 130.0
64 TraesCS1B01G308600 chr7A 90.816 98 6 3 4805 4901 557893193 557893288 1.610000e-25 128.0
65 TraesCS1B01G308600 chr2A 84.298 121 15 4 4784 4901 748086433 748086314 1.260000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G308600 chr1B 531198202 531203723 5521 False 3435.800000 10198 97.916667 1 5522 3 chr1B.!!$F3 5521
1 TraesCS1B01G308600 chr1A 493815273 493821070 5797 False 1294.740000 4388 91.507800 322 5401 5 chr1A.!!$F2 5079
2 TraesCS1B01G308600 chr1D 391319763 391327797 8034 True 1254.833333 2669 94.828333 322 5401 6 chr1D.!!$R2 5079
3 TraesCS1B01G308600 chr3D 531364758 531365263 505 False 470.000000 470 84.100000 4903 5403 1 chr3D.!!$F1 500
4 TraesCS1B01G308600 chr3B 702689527 702690035 508 False 457.000000 457 83.619000 4903 5403 1 chr3B.!!$F1 500
5 TraesCS1B01G308600 chr7D 314649839 314650574 735 False 251.666667 401 93.201667 2557 4067 3 chr7D.!!$F1 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.034767 ATGCCACATGGACCTGACAG 60.035 55.0 0.87 0.0 37.39 3.51 F
364 369 0.039165 CTCGGTGCAAAAGCCCTTTC 60.039 55.0 0.00 0.0 31.45 2.62 F
1078 1155 0.102120 TGTTCCGCTTTTGGTGCTTG 59.898 50.0 0.00 0.0 0.00 4.01 F
1225 1310 0.377203 GCCGTTGACCCGATTGATTC 59.623 55.0 0.00 0.0 0.00 2.52 F
2641 3652 0.462581 TGACGCATCAATCTCAGGCC 60.463 55.0 0.00 0.0 0.00 5.19 F
4188 5318 0.236711 CTGTTGCTTCTGTTGCCTCG 59.763 55.0 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1285 1375 0.033504 TCAACTCAAGCCACCTCGAC 59.966 55.000 0.00 0.0 0.00 4.20 R
1483 2484 2.638480 TGAAGTTGTCTTGGTGGGAG 57.362 50.000 0.00 0.0 33.64 4.30 R
2475 3486 2.769663 ACGTGGACATTATCTAAGGCCA 59.230 45.455 5.01 0.0 0.00 5.36 R
3214 4343 1.227943 GCAGTGTGGCCTGAACTGA 60.228 57.895 26.99 0.0 43.22 3.41 R
4248 5378 0.036875 GACTGGGGTTGAGAGTTGGG 59.963 60.000 0.00 0.0 0.00 4.12 R
5402 8743 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.0 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.741321 ATTTTTATGCCACATGGACCTG 57.259 40.909 0.87 0.00 37.39 4.00
24 25 3.448093 TTTTATGCCACATGGACCTGA 57.552 42.857 0.87 0.00 37.39 3.86
25 26 2.418368 TTATGCCACATGGACCTGAC 57.582 50.000 0.87 0.00 37.39 3.51
26 27 1.284313 TATGCCACATGGACCTGACA 58.716 50.000 0.87 0.00 37.39 3.58
27 28 0.034767 ATGCCACATGGACCTGACAG 60.035 55.000 0.87 0.00 37.39 3.51
28 29 1.377725 GCCACATGGACCTGACAGG 60.378 63.158 20.45 20.45 37.22 4.00
37 38 3.569210 CCTGACAGGTGGGCCACA 61.569 66.667 35.69 15.90 35.86 4.17
38 39 2.515398 CTGACAGGTGGGCCACAA 59.485 61.111 35.69 15.53 35.86 3.33
39 40 1.898574 CTGACAGGTGGGCCACAAC 60.899 63.158 35.69 20.74 35.86 3.32
44 45 2.194597 GGTGGGCCACAACTGTCA 59.805 61.111 35.69 0.00 35.86 3.58
45 46 1.454847 GGTGGGCCACAACTGTCAA 60.455 57.895 35.69 0.00 35.86 3.18
46 47 1.040339 GGTGGGCCACAACTGTCAAA 61.040 55.000 35.69 0.00 35.86 2.69
47 48 0.385390 GTGGGCCACAACTGTCAAAG 59.615 55.000 31.26 0.00 34.08 2.77
48 49 0.257328 TGGGCCACAACTGTCAAAGA 59.743 50.000 0.00 0.00 0.00 2.52
49 50 1.341482 TGGGCCACAACTGTCAAAGAA 60.341 47.619 0.00 0.00 0.00 2.52
50 51 1.067060 GGGCCACAACTGTCAAAGAAC 59.933 52.381 4.39 0.00 0.00 3.01
51 52 1.268539 GGCCACAACTGTCAAAGAACG 60.269 52.381 0.00 0.00 0.00 3.95
52 53 1.268539 GCCACAACTGTCAAAGAACGG 60.269 52.381 0.00 0.00 0.00 4.44
53 54 2.014128 CCACAACTGTCAAAGAACGGT 58.986 47.619 0.00 0.00 40.49 4.83
55 56 3.119637 CCACAACTGTCAAAGAACGGTTT 60.120 43.478 0.00 0.00 44.40 3.27
56 57 4.095185 CCACAACTGTCAAAGAACGGTTTA 59.905 41.667 0.00 0.00 44.40 2.01
57 58 5.025826 CACAACTGTCAAAGAACGGTTTAC 58.974 41.667 0.00 0.00 44.40 2.01
58 59 4.696402 ACAACTGTCAAAGAACGGTTTACA 59.304 37.500 0.00 0.00 44.40 2.41
59 60 5.181622 ACAACTGTCAAAGAACGGTTTACAA 59.818 36.000 0.00 0.00 44.40 2.41
60 61 6.127842 ACAACTGTCAAAGAACGGTTTACAAT 60.128 34.615 0.00 0.00 44.40 2.71
61 62 6.445357 ACTGTCAAAGAACGGTTTACAATT 57.555 33.333 0.00 0.00 35.16 2.32
62 63 6.859017 ACTGTCAAAGAACGGTTTACAATTT 58.141 32.000 0.00 0.00 35.16 1.82
63 64 7.987649 ACTGTCAAAGAACGGTTTACAATTTA 58.012 30.769 0.00 0.00 35.16 1.40
64 65 8.460428 ACTGTCAAAGAACGGTTTACAATTTAA 58.540 29.630 0.00 0.00 35.16 1.52
65 66 9.291664 CTGTCAAAGAACGGTTTACAATTTAAA 57.708 29.630 0.00 0.00 0.00 1.52
66 67 9.074443 TGTCAAAGAACGGTTTACAATTTAAAC 57.926 29.630 0.00 11.60 36.86 2.01
67 68 9.074443 GTCAAAGAACGGTTTACAATTTAAACA 57.926 29.630 17.37 1.28 38.71 2.83
68 69 9.074443 TCAAAGAACGGTTTACAATTTAAACAC 57.926 29.630 17.37 10.43 38.71 3.32
69 70 9.078753 CAAAGAACGGTTTACAATTTAAACACT 57.921 29.630 17.37 11.32 38.71 3.55
70 71 8.845942 AAGAACGGTTTACAATTTAAACACTC 57.154 30.769 17.37 12.57 38.71 3.51
71 72 7.127686 AGAACGGTTTACAATTTAAACACTCG 58.872 34.615 17.37 14.90 38.71 4.18
72 73 5.750650 ACGGTTTACAATTTAAACACTCGG 58.249 37.500 17.37 8.83 38.71 4.63
73 74 5.296531 ACGGTTTACAATTTAAACACTCGGT 59.703 36.000 17.37 9.19 38.71 4.69
74 75 5.622041 CGGTTTACAATTTAAACACTCGGTG 59.378 40.000 17.37 2.92 38.71 4.94
75 76 6.511444 CGGTTTACAATTTAAACACTCGGTGA 60.511 38.462 17.37 0.00 38.71 4.02
76 77 7.364970 GGTTTACAATTTAAACACTCGGTGAT 58.635 34.615 17.37 0.00 38.71 3.06
77 78 7.863877 GGTTTACAATTTAAACACTCGGTGATT 59.136 33.333 17.37 7.65 38.71 2.57
78 79 9.240159 GTTTACAATTTAAACACTCGGTGATTT 57.760 29.630 10.46 9.22 37.37 2.17
79 80 8.789881 TTACAATTTAAACACTCGGTGATTTG 57.210 30.769 10.46 3.92 36.96 2.32
80 81 6.212955 ACAATTTAAACACTCGGTGATTTGG 58.787 36.000 10.46 0.00 36.96 3.28
81 82 4.839668 TTTAAACACTCGGTGATTTGGG 57.160 40.909 10.46 0.00 36.96 4.12
82 83 2.358322 AAACACTCGGTGATTTGGGT 57.642 45.000 10.46 0.00 36.96 4.51
83 84 2.358322 AACACTCGGTGATTTGGGTT 57.642 45.000 10.46 0.00 36.96 4.11
84 85 2.358322 ACACTCGGTGATTTGGGTTT 57.642 45.000 10.46 0.00 36.96 3.27
85 86 2.661718 ACACTCGGTGATTTGGGTTTT 58.338 42.857 10.46 0.00 36.96 2.43
86 87 3.028130 ACACTCGGTGATTTGGGTTTTT 58.972 40.909 10.46 0.00 36.96 1.94
102 103 2.570442 TTTTTGAAACAGCCGACCAC 57.430 45.000 0.00 0.00 0.00 4.16
103 104 1.464734 TTTTGAAACAGCCGACCACA 58.535 45.000 0.00 0.00 0.00 4.17
104 105 0.736053 TTTGAAACAGCCGACCACAC 59.264 50.000 0.00 0.00 0.00 3.82
105 106 1.433053 TTGAAACAGCCGACCACACG 61.433 55.000 0.00 0.00 0.00 4.49
106 107 1.885850 GAAACAGCCGACCACACGT 60.886 57.895 0.00 0.00 0.00 4.49
107 108 1.433837 GAAACAGCCGACCACACGTT 61.434 55.000 0.00 0.00 0.00 3.99
108 109 1.027792 AAACAGCCGACCACACGTTT 61.028 50.000 0.00 0.00 0.00 3.60
109 110 1.711060 AACAGCCGACCACACGTTTG 61.711 55.000 0.00 0.00 0.00 2.93
110 111 2.590575 AGCCGACCACACGTTTGG 60.591 61.111 19.12 19.12 43.04 3.28
162 163 2.752075 TTTTTGGAACCCTAACCCGT 57.248 45.000 0.00 0.00 0.00 5.28
163 164 3.872459 TTTTTGGAACCCTAACCCGTA 57.128 42.857 0.00 0.00 0.00 4.02
164 165 3.872459 TTTTGGAACCCTAACCCGTAA 57.128 42.857 0.00 0.00 0.00 3.18
165 166 3.872459 TTTGGAACCCTAACCCGTAAA 57.128 42.857 0.00 0.00 0.00 2.01
166 167 2.857186 TGGAACCCTAACCCGTAAAC 57.143 50.000 0.00 0.00 0.00 2.01
167 168 2.337849 TGGAACCCTAACCCGTAAACT 58.662 47.619 0.00 0.00 0.00 2.66
168 169 3.515562 TGGAACCCTAACCCGTAAACTA 58.484 45.455 0.00 0.00 0.00 2.24
169 170 3.515104 TGGAACCCTAACCCGTAAACTAG 59.485 47.826 0.00 0.00 0.00 2.57
170 171 3.515502 GGAACCCTAACCCGTAAACTAGT 59.484 47.826 0.00 0.00 0.00 2.57
171 172 4.709886 GGAACCCTAACCCGTAAACTAGTA 59.290 45.833 0.00 0.00 0.00 1.82
172 173 5.163509 GGAACCCTAACCCGTAAACTAGTAG 60.164 48.000 0.00 0.00 0.00 2.57
173 174 4.935578 ACCCTAACCCGTAAACTAGTAGT 58.064 43.478 0.00 0.00 0.00 2.73
174 175 5.333581 ACCCTAACCCGTAAACTAGTAGTT 58.666 41.667 9.85 9.85 40.80 2.24
176 177 6.270000 ACCCTAACCCGTAAACTAGTAGTTTT 59.730 38.462 28.44 14.87 45.38 2.43
177 178 7.453439 ACCCTAACCCGTAAACTAGTAGTTTTA 59.547 37.037 28.44 15.15 45.38 1.52
178 179 8.478066 CCCTAACCCGTAAACTAGTAGTTTTAT 58.522 37.037 28.44 11.45 45.38 1.40
179 180 9.305925 CCTAACCCGTAAACTAGTAGTTTTATG 57.694 37.037 28.44 18.97 45.38 1.90
180 181 7.601073 AACCCGTAAACTAGTAGTTTTATGC 57.399 36.000 28.44 16.83 45.38 3.14
181 182 6.939622 ACCCGTAAACTAGTAGTTTTATGCT 58.060 36.000 28.44 10.13 45.38 3.79
182 183 8.066612 ACCCGTAAACTAGTAGTTTTATGCTA 57.933 34.615 28.44 10.80 45.38 3.49
183 184 8.699130 ACCCGTAAACTAGTAGTTTTATGCTAT 58.301 33.333 28.44 8.82 45.38 2.97
184 185 9.538508 CCCGTAAACTAGTAGTTTTATGCTATT 57.461 33.333 28.44 8.17 45.38 1.73
197 198 9.384764 AGTTTTATGCTATTTACTCCTTCAGTC 57.615 33.333 0.00 0.00 36.43 3.51
198 199 9.162764 GTTTTATGCTATTTACTCCTTCAGTCA 57.837 33.333 0.00 0.00 36.43 3.41
199 200 9.905713 TTTTATGCTATTTACTCCTTCAGTCAT 57.094 29.630 0.00 0.00 36.43 3.06
200 201 8.893219 TTATGCTATTTACTCCTTCAGTCATG 57.107 34.615 0.00 0.00 36.43 3.07
201 202 6.299805 TGCTATTTACTCCTTCAGTCATGT 57.700 37.500 0.00 0.00 36.43 3.21
202 203 7.418337 TGCTATTTACTCCTTCAGTCATGTA 57.582 36.000 0.00 0.00 36.43 2.29
203 204 8.023021 TGCTATTTACTCCTTCAGTCATGTAT 57.977 34.615 0.00 0.00 36.43 2.29
204 205 7.928167 TGCTATTTACTCCTTCAGTCATGTATG 59.072 37.037 0.00 0.00 36.43 2.39
205 206 7.386299 GCTATTTACTCCTTCAGTCATGTATGG 59.614 40.741 0.00 0.00 36.43 2.74
206 207 6.620877 TTTACTCCTTCAGTCATGTATGGT 57.379 37.500 0.00 0.00 36.43 3.55
207 208 6.620877 TTACTCCTTCAGTCATGTATGGTT 57.379 37.500 0.00 0.00 36.43 3.67
208 209 4.836825 ACTCCTTCAGTCATGTATGGTTG 58.163 43.478 0.00 0.00 0.00 3.77
209 210 4.194640 CTCCTTCAGTCATGTATGGTTGG 58.805 47.826 0.00 0.00 0.00 3.77
210 211 3.587061 TCCTTCAGTCATGTATGGTTGGT 59.413 43.478 0.00 0.00 0.00 3.67
211 212 3.691118 CCTTCAGTCATGTATGGTTGGTG 59.309 47.826 0.00 0.00 0.00 4.17
212 213 2.710377 TCAGTCATGTATGGTTGGTGC 58.290 47.619 0.00 0.00 0.00 5.01
213 214 2.305635 TCAGTCATGTATGGTTGGTGCT 59.694 45.455 0.00 0.00 0.00 4.40
214 215 3.084039 CAGTCATGTATGGTTGGTGCTT 58.916 45.455 0.00 0.00 0.00 3.91
215 216 4.019771 TCAGTCATGTATGGTTGGTGCTTA 60.020 41.667 0.00 0.00 0.00 3.09
216 217 4.883585 CAGTCATGTATGGTTGGTGCTTAT 59.116 41.667 0.00 0.00 0.00 1.73
217 218 4.883585 AGTCATGTATGGTTGGTGCTTATG 59.116 41.667 0.00 0.00 0.00 1.90
218 219 4.640201 GTCATGTATGGTTGGTGCTTATGT 59.360 41.667 0.00 0.00 0.00 2.29
219 220 4.639755 TCATGTATGGTTGGTGCTTATGTG 59.360 41.667 0.00 0.00 0.00 3.21
220 221 2.752354 TGTATGGTTGGTGCTTATGTGC 59.248 45.455 0.00 0.00 0.00 4.57
221 222 1.185315 ATGGTTGGTGCTTATGTGCC 58.815 50.000 0.00 0.00 0.00 5.01
222 223 0.112218 TGGTTGGTGCTTATGTGCCT 59.888 50.000 0.00 0.00 0.00 4.75
223 224 1.256812 GGTTGGTGCTTATGTGCCTT 58.743 50.000 0.00 0.00 0.00 4.35
224 225 2.224892 TGGTTGGTGCTTATGTGCCTTA 60.225 45.455 0.00 0.00 0.00 2.69
225 226 3.023832 GGTTGGTGCTTATGTGCCTTAT 58.976 45.455 0.00 0.00 0.00 1.73
226 227 4.204012 GGTTGGTGCTTATGTGCCTTATA 58.796 43.478 0.00 0.00 0.00 0.98
227 228 4.642885 GGTTGGTGCTTATGTGCCTTATAA 59.357 41.667 0.00 0.00 0.00 0.98
228 229 5.301805 GGTTGGTGCTTATGTGCCTTATAAT 59.698 40.000 0.00 0.00 0.00 1.28
229 230 6.183360 GGTTGGTGCTTATGTGCCTTATAATT 60.183 38.462 0.00 0.00 0.00 1.40
230 231 7.264947 GTTGGTGCTTATGTGCCTTATAATTT 58.735 34.615 0.00 0.00 0.00 1.82
231 232 6.804677 TGGTGCTTATGTGCCTTATAATTTG 58.195 36.000 0.00 0.00 0.00 2.32
232 233 6.605194 TGGTGCTTATGTGCCTTATAATTTGA 59.395 34.615 0.00 0.00 0.00 2.69
233 234 7.287466 TGGTGCTTATGTGCCTTATAATTTGAT 59.713 33.333 0.00 0.00 0.00 2.57
234 235 7.809806 GGTGCTTATGTGCCTTATAATTTGATC 59.190 37.037 0.00 0.00 0.00 2.92
235 236 8.571336 GTGCTTATGTGCCTTATAATTTGATCT 58.429 33.333 0.00 0.00 0.00 2.75
236 237 9.135189 TGCTTATGTGCCTTATAATTTGATCTT 57.865 29.630 0.00 0.00 0.00 2.40
237 238 9.971922 GCTTATGTGCCTTATAATTTGATCTTT 57.028 29.630 0.00 0.00 0.00 2.52
318 319 9.938280 AAGCCTTTGTTTTAAGTTTTAAGTCTT 57.062 25.926 0.00 0.00 0.00 3.01
319 320 9.938280 AGCCTTTGTTTTAAGTTTTAAGTCTTT 57.062 25.926 0.00 0.00 0.00 2.52
348 353 2.337583 TCGGCTGATGAAAAGTTCTCG 58.662 47.619 0.00 0.00 0.00 4.04
354 359 3.210227 TGATGAAAAGTTCTCGGTGCAA 58.790 40.909 0.00 0.00 0.00 4.08
364 369 0.039165 CTCGGTGCAAAAGCCCTTTC 60.039 55.000 0.00 0.00 31.45 2.62
376 381 2.583143 AGCCCTTTCTGCGTACTTTTT 58.417 42.857 0.00 0.00 0.00 1.94
377 382 2.552743 AGCCCTTTCTGCGTACTTTTTC 59.447 45.455 0.00 0.00 0.00 2.29
378 383 2.552743 GCCCTTTCTGCGTACTTTTTCT 59.447 45.455 0.00 0.00 0.00 2.52
413 418 4.897856 GGCAACGCAACGCAACGT 62.898 61.111 0.00 0.00 46.07 3.99
414 419 2.052941 GCAACGCAACGCAACGTA 60.053 55.556 0.00 0.00 42.68 3.57
415 420 1.651730 GCAACGCAACGCAACGTAA 60.652 52.632 0.00 0.00 42.68 3.18
416 421 1.847974 GCAACGCAACGCAACGTAAC 61.848 55.000 0.00 0.00 42.68 2.50
451 456 2.507452 CGGATAAACCCCGTCCCC 59.493 66.667 0.00 0.00 41.91 4.81
452 457 2.068213 CGGATAAACCCCGTCCCCT 61.068 63.158 0.00 0.00 41.91 4.79
453 458 1.834996 GGATAAACCCCGTCCCCTC 59.165 63.158 0.00 0.00 0.00 4.30
517 522 3.862877 AACCCAAACCGGTAAGTAACT 57.137 42.857 8.00 0.00 33.98 2.24
522 549 3.244665 CCAAACCGGTAAGTAACTCCCTT 60.245 47.826 8.00 0.00 0.00 3.95
570 597 3.695606 GAGCCTCAGCCACGTGGA 61.696 66.667 38.30 16.73 41.25 4.02
571 598 3.240134 GAGCCTCAGCCACGTGGAA 62.240 63.158 38.30 20.29 41.25 3.53
572 599 3.050275 GCCTCAGCCACGTGGAAC 61.050 66.667 38.30 21.09 37.39 3.62
601 629 2.577059 CGTCATGCACGTACCCCT 59.423 61.111 8.84 0.00 44.07 4.79
626 654 1.153706 CCGAGGTGGATAAACGCGT 60.154 57.895 5.58 5.58 42.00 6.01
635 664 1.474498 GGATAAACGCGTCCCAATCCT 60.474 52.381 23.80 2.96 32.00 3.24
637 666 0.108041 TAAACGCGTCCCAATCCTCC 60.108 55.000 14.44 0.00 0.00 4.30
685 715 3.474570 ACCTGCCATCCTCGCCTC 61.475 66.667 0.00 0.00 0.00 4.70
686 716 3.160047 CCTGCCATCCTCGCCTCT 61.160 66.667 0.00 0.00 0.00 3.69
687 717 2.420890 CTGCCATCCTCGCCTCTC 59.579 66.667 0.00 0.00 0.00 3.20
698 741 4.890306 GCCTCTCCCCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
820 880 3.710722 CGGAAGGACCAGGCTGCT 61.711 66.667 9.56 0.00 38.90 4.24
1020 1092 3.607310 CGATGGTGACTACTACTGATCGC 60.607 52.174 0.00 0.00 0.00 4.58
1063 1140 0.817229 GCCTCCTGCTATGGCTGTTC 60.817 60.000 1.68 0.00 43.05 3.18
1077 1154 0.385390 CTGTTCCGCTTTTGGTGCTT 59.615 50.000 0.00 0.00 0.00 3.91
1078 1155 0.102120 TGTTCCGCTTTTGGTGCTTG 59.898 50.000 0.00 0.00 0.00 4.01
1079 1156 1.067250 TTCCGCTTTTGGTGCTTGC 59.933 52.632 0.00 0.00 0.00 4.01
1080 1157 2.356194 CCGCTTTTGGTGCTTGCC 60.356 61.111 0.00 0.00 0.00 4.52
1081 1158 2.730604 CGCTTTTGGTGCTTGCCG 60.731 61.111 0.00 0.00 0.00 5.69
1104 1186 2.918712 CGCTGAGTGGGGAGAATTAT 57.081 50.000 0.00 0.00 0.00 1.28
1225 1310 0.377203 GCCGTTGACCCGATTGATTC 59.623 55.000 0.00 0.00 0.00 2.52
1272 1362 9.120538 TGCAATCTATTTGGGAATTCTTACTAC 57.879 33.333 5.23 0.00 35.75 2.73
1277 1367 8.648693 TCTATTTGGGAATTCTTACTACCTAGC 58.351 37.037 5.23 0.00 0.00 3.42
1278 1368 6.630203 TTTGGGAATTCTTACTACCTAGCA 57.370 37.500 5.23 0.00 0.00 3.49
1279 1369 6.630203 TTGGGAATTCTTACTACCTAGCAA 57.370 37.500 5.23 0.00 0.00 3.91
1285 1375 8.831550 GGAATTCTTACTACCTAGCAAATTGAG 58.168 37.037 5.23 0.00 0.00 3.02
1312 1402 2.162408 GTGGCTTGAGTTGATTGGTAGC 59.838 50.000 0.00 0.00 0.00 3.58
1353 2354 7.968405 CCTGTTATTGGTAGTTTTCTGTAATGC 59.032 37.037 0.00 0.00 0.00 3.56
1495 2496 7.939784 ATAAAGTTATTTCTCCCACCAAGAC 57.060 36.000 0.00 0.00 0.00 3.01
1619 2620 2.227149 TGCTGAGCTGCATGTTTTACAG 59.773 45.455 5.83 1.12 38.12 2.74
1670 2671 0.912486 ACCCTCCTTTGATCCTTCGG 59.088 55.000 0.00 0.00 0.00 4.30
1677 2678 2.159028 CCTTTGATCCTTCGGAGTCTCC 60.159 54.545 9.05 9.05 34.05 3.71
1690 2693 4.342378 TCGGAGTCTCCTTTATTCTCATGG 59.658 45.833 17.00 0.00 33.30 3.66
1984 2989 1.089123 ACCCTTTTGGCCAATCCCTA 58.911 50.000 21.26 0.00 37.83 3.53
2065 3070 5.353123 ACATGCTAACTGTTATTGGGTAACG 59.647 40.000 0.00 0.00 44.58 3.18
2122 3127 8.603898 ATGGATCATATAATTGGCATTGACAT 57.396 30.769 0.00 0.00 0.00 3.06
2138 3143 8.603181 GGCATTGACATTTTTGTGGTTATATTC 58.397 33.333 0.00 0.00 0.00 1.75
2160 3165 7.672983 TTCCTTATTGTGATTTCTGTCTCAC 57.327 36.000 0.00 0.00 41.69 3.51
2161 3166 7.009179 TCCTTATTGTGATTTCTGTCTCACT 57.991 36.000 4.53 0.00 41.83 3.41
2162 3167 7.453393 TCCTTATTGTGATTTCTGTCTCACTT 58.547 34.615 4.53 0.00 41.83 3.16
2163 3168 7.388776 TCCTTATTGTGATTTCTGTCTCACTTG 59.611 37.037 4.53 0.00 41.83 3.16
2164 3169 7.173907 CCTTATTGTGATTTCTGTCTCACTTGT 59.826 37.037 4.53 0.00 41.83 3.16
2225 3230 5.831997 ACACAATGCTAAGTCTTTTGGAAC 58.168 37.500 0.00 0.00 0.00 3.62
2532 3543 3.431207 GGGCACGCTACTGGACTTTAATA 60.431 47.826 0.00 0.00 0.00 0.98
2540 3551 8.639761 ACGCTACTGGACTTTAATAATATCAGT 58.360 33.333 0.00 0.00 37.82 3.41
2641 3652 0.462581 TGACGCATCAATCTCAGGCC 60.463 55.000 0.00 0.00 0.00 5.19
2734 3746 5.250235 TGCATTTCTTCTCTAGTACTCCG 57.750 43.478 0.00 0.00 0.00 4.63
2756 3768 5.048713 CCGTATTCAACTCCTTGAGCTTTTT 60.049 40.000 0.00 0.00 37.70 1.94
3117 4129 6.594159 CACAGACGTACAAAGAATATTTCCCT 59.406 38.462 0.00 0.00 0.00 4.20
3143 4155 1.592131 GTGTACCGTGGTGTTCGCA 60.592 57.895 0.72 0.00 0.00 5.10
3168 4180 8.644619 CATCAAGTGAATTTGAAGTTTAGCATG 58.355 33.333 0.00 0.00 40.21 4.06
3170 4182 7.862372 TCAAGTGAATTTGAAGTTTAGCATGAC 59.138 33.333 0.00 0.00 34.32 3.06
3171 4183 6.373779 AGTGAATTTGAAGTTTAGCATGACG 58.626 36.000 0.00 0.00 0.00 4.35
3172 4184 5.569059 GTGAATTTGAAGTTTAGCATGACGG 59.431 40.000 0.00 0.00 0.00 4.79
3174 4186 2.177394 TGAAGTTTAGCATGACGGCA 57.823 45.000 0.00 0.00 35.83 5.69
3175 4187 2.710377 TGAAGTTTAGCATGACGGCAT 58.290 42.857 0.00 0.00 35.83 4.40
3176 4188 3.867857 TGAAGTTTAGCATGACGGCATA 58.132 40.909 1.73 0.00 35.83 3.14
3214 4343 3.067106 CTGTGCCGTCTAAATGACAGTT 58.933 45.455 0.00 0.00 45.60 3.16
3288 4417 4.579869 TGTTGTTTAGGAATGAGGAGCTC 58.420 43.478 4.71 4.71 0.00 4.09
3315 4444 8.593945 TGAAACAAGGCCTAGAAATAAATGAT 57.406 30.769 5.16 0.00 0.00 2.45
3434 4563 1.601477 CACCACAGCCATCTGCACA 60.601 57.895 0.00 0.00 44.10 4.57
3435 4564 1.151221 ACCACAGCCATCTGCACAA 59.849 52.632 0.00 0.00 44.10 3.33
3633 4762 0.999228 GTAGCGACGAGGCATCATCG 60.999 60.000 12.98 12.98 45.54 3.84
3745 4874 3.506455 GTCAGCTTCTGTCAGTGGTACTA 59.494 47.826 0.00 0.00 32.61 1.82
3768 4897 6.011122 AGGACAAAAGAGCAGGATATGATT 57.989 37.500 0.00 0.00 0.00 2.57
3783 4912 6.013812 AGGATATGATTGACCTTCTAAGCCTC 60.014 42.308 0.00 0.00 0.00 4.70
3954 5084 5.327732 CAGGCATATCCAATAAATCAGGGT 58.672 41.667 0.00 0.00 37.29 4.34
3978 5108 7.412237 GGTTACACTCCATACAACAATTACGTC 60.412 40.741 0.00 0.00 0.00 4.34
3981 5111 3.586892 TCCATACAACAATTACGTCGCA 58.413 40.909 0.00 0.00 0.00 5.10
4188 5318 0.236711 CTGTTGCTTCTGTTGCCTCG 59.763 55.000 0.00 0.00 0.00 4.63
4254 5384 0.114954 AACATGTGCCATCCCCAACT 59.885 50.000 0.00 0.00 0.00 3.16
4256 5386 0.033796 CATGTGCCATCCCCAACTCT 60.034 55.000 0.00 0.00 0.00 3.24
4257 5387 0.257039 ATGTGCCATCCCCAACTCTC 59.743 55.000 0.00 0.00 0.00 3.20
4260 5390 0.038166 TGCCATCCCCAACTCTCAAC 59.962 55.000 0.00 0.00 0.00 3.18
4281 5411 1.376543 CCAGTCCTATGCAACAGCAG 58.623 55.000 0.00 0.00 42.36 4.24
4289 5419 1.451067 ATGCAACAGCAGAGCTCTTC 58.549 50.000 15.27 9.92 42.36 2.87
4417 5547 4.691860 CCAGACAATCTGTTTGGTGATC 57.308 45.455 7.94 0.00 44.81 2.92
4548 5678 3.669824 CGCGAGTTCAAGTTAGCTACTCA 60.670 47.826 0.00 0.00 35.54 3.41
4689 5819 6.035327 GCTGTAAATGATTTGCTTCAACCATC 59.965 38.462 7.48 0.00 0.00 3.51
4727 5857 0.039165 CGCACAAAGGAGGAAAAGGC 60.039 55.000 0.00 0.00 0.00 4.35
4739 5869 0.405973 GAAAAGGCAAGGGGAGAGGT 59.594 55.000 0.00 0.00 0.00 3.85
4741 5871 2.432174 AAAGGCAAGGGGAGAGGTGC 62.432 60.000 0.00 0.00 36.24 5.01
4848 5979 8.635877 AAATACAAGAGCGTTTAGATCACTAG 57.364 34.615 0.00 0.00 37.82 2.57
4849 5980 5.899120 ACAAGAGCGTTTAGATCACTAGA 57.101 39.130 0.00 0.00 37.82 2.43
4850 5981 5.885881 ACAAGAGCGTTTAGATCACTAGAG 58.114 41.667 0.00 0.00 37.82 2.43
4853 5984 6.854496 AGAGCGTTTAGATCACTAGAGTAG 57.146 41.667 0.00 0.00 37.82 2.57
4854 5985 6.350906 AGAGCGTTTAGATCACTAGAGTAGT 58.649 40.000 0.00 0.00 37.82 2.73
4855 5986 7.499292 AGAGCGTTTAGATCACTAGAGTAGTA 58.501 38.462 0.00 0.00 37.82 1.82
4856 5987 7.986320 AGAGCGTTTAGATCACTAGAGTAGTAA 59.014 37.037 0.00 0.00 37.82 2.24
4901 8215 7.035840 ACGCTCTTATATTTCTTTACGGAGA 57.964 36.000 0.00 0.00 0.00 3.71
5009 8329 2.930682 GTCTCCTTTCCTAATGTGCGTC 59.069 50.000 0.00 0.00 0.00 5.19
5010 8330 2.093658 TCTCCTTTCCTAATGTGCGTCC 60.094 50.000 0.00 0.00 0.00 4.79
5012 8332 2.009774 CCTTTCCTAATGTGCGTCCTG 58.990 52.381 0.00 0.00 0.00 3.86
5073 8393 3.819564 ATACATTGAGACGCAAGCCTA 57.180 42.857 0.00 0.00 40.42 3.93
5078 8398 2.010145 TGAGACGCAAGCCTATTGTC 57.990 50.000 0.00 0.00 45.62 3.18
5082 8402 2.744202 AGACGCAAGCCTATTGTCTTTG 59.256 45.455 0.00 0.00 45.62 2.77
5084 8404 2.226437 ACGCAAGCCTATTGTCTTTGTG 59.774 45.455 0.00 0.00 45.62 3.33
5085 8405 2.226437 CGCAAGCCTATTGTCTTTGTGT 59.774 45.455 0.00 0.00 0.00 3.72
5087 8407 4.620982 GCAAGCCTATTGTCTTTGTGTTT 58.379 39.130 0.00 0.00 0.00 2.83
5088 8408 5.049828 GCAAGCCTATTGTCTTTGTGTTTT 58.950 37.500 0.00 0.00 0.00 2.43
5089 8409 5.175673 GCAAGCCTATTGTCTTTGTGTTTTC 59.824 40.000 0.00 0.00 0.00 2.29
5090 8410 5.453567 AGCCTATTGTCTTTGTGTTTTCC 57.546 39.130 0.00 0.00 0.00 3.13
5091 8411 4.280929 AGCCTATTGTCTTTGTGTTTTCCC 59.719 41.667 0.00 0.00 0.00 3.97
5092 8412 4.280929 GCCTATTGTCTTTGTGTTTTCCCT 59.719 41.667 0.00 0.00 0.00 4.20
5093 8413 5.221441 GCCTATTGTCTTTGTGTTTTCCCTT 60.221 40.000 0.00 0.00 0.00 3.95
5137 8466 5.682234 ACATCACACAGATATGTTCAGGA 57.318 39.130 0.00 0.00 34.43 3.86
5238 8570 2.617308 CTGATTGATGCCAACCTAGCAG 59.383 50.000 0.00 0.00 44.90 4.24
5335 8668 1.131883 GTGGCACATGATTCAGCTGAC 59.868 52.381 18.03 6.65 44.52 3.51
5401 8742 8.158169 TCATTTCAATCAGCAATCCAGTATAC 57.842 34.615 0.00 0.00 0.00 1.47
5402 8743 7.994911 TCATTTCAATCAGCAATCCAGTATACT 59.005 33.333 0.00 0.00 0.00 2.12
5403 8744 7.792374 TTTCAATCAGCAATCCAGTATACTC 57.208 36.000 1.26 0.00 0.00 2.59
5404 8745 5.858381 TCAATCAGCAATCCAGTATACTCC 58.142 41.667 1.26 0.00 0.00 3.85
5405 8746 4.899352 ATCAGCAATCCAGTATACTCCC 57.101 45.455 1.26 0.00 0.00 4.30
5406 8747 3.928754 TCAGCAATCCAGTATACTCCCT 58.071 45.455 1.26 0.00 0.00 4.20
5407 8748 3.898123 TCAGCAATCCAGTATACTCCCTC 59.102 47.826 1.26 0.00 0.00 4.30
5408 8749 3.007398 CAGCAATCCAGTATACTCCCTCC 59.993 52.174 1.26 0.00 0.00 4.30
5409 8750 2.028930 GCAATCCAGTATACTCCCTCCG 60.029 54.545 1.26 0.00 0.00 4.63
5410 8751 3.231818 CAATCCAGTATACTCCCTCCGT 58.768 50.000 1.26 0.00 0.00 4.69
5411 8752 2.653234 TCCAGTATACTCCCTCCGTC 57.347 55.000 1.26 0.00 0.00 4.79
5412 8753 1.144503 TCCAGTATACTCCCTCCGTCC 59.855 57.143 1.26 0.00 0.00 4.79
5413 8754 1.236628 CAGTATACTCCCTCCGTCCG 58.763 60.000 1.26 0.00 0.00 4.79
5414 8755 0.110104 AGTATACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
5415 8756 0.109342 GTATACTCCCTCCGTCCGGA 59.891 60.000 0.00 0.00 42.90 5.14
5416 8757 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
5417 8758 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
5418 8759 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
5419 8760 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
5420 8761 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
5421 8762 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
5422 8763 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
5423 8764 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5424 8765 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5425 8766 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5426 8767 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5427 8768 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
5428 8769 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
5429 8770 2.277084 GTCCGGAATTACTTGTCGCAT 58.723 47.619 5.23 0.00 0.00 4.73
5430 8771 3.450578 GTCCGGAATTACTTGTCGCATA 58.549 45.455 5.23 0.00 0.00 3.14
5431 8772 3.866910 GTCCGGAATTACTTGTCGCATAA 59.133 43.478 5.23 0.00 0.00 1.90
5432 8773 4.330620 GTCCGGAATTACTTGTCGCATAAA 59.669 41.667 5.23 0.00 0.00 1.40
5433 8774 5.007332 GTCCGGAATTACTTGTCGCATAAAT 59.993 40.000 5.23 0.00 0.00 1.40
5434 8775 5.007234 TCCGGAATTACTTGTCGCATAAATG 59.993 40.000 0.00 0.00 0.00 2.32
5435 8776 5.204833 CGGAATTACTTGTCGCATAAATGG 58.795 41.667 0.00 0.00 0.00 3.16
5436 8777 5.007234 CGGAATTACTTGTCGCATAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
5437 8778 6.293407 CGGAATTACTTGTCGCATAAATGGAT 60.293 38.462 0.00 0.00 0.00 3.41
5438 8779 6.857964 GGAATTACTTGTCGCATAAATGGATG 59.142 38.462 0.00 0.00 0.00 3.51
5439 8780 7.255104 GGAATTACTTGTCGCATAAATGGATGA 60.255 37.037 0.00 0.00 0.00 2.92
5440 8781 6.993786 TTACTTGTCGCATAAATGGATGAA 57.006 33.333 0.00 0.00 0.00 2.57
5441 8782 5.895636 ACTTGTCGCATAAATGGATGAAA 57.104 34.783 0.00 0.00 0.00 2.69
5442 8783 6.266168 ACTTGTCGCATAAATGGATGAAAA 57.734 33.333 0.00 0.00 0.00 2.29
5443 8784 6.866480 ACTTGTCGCATAAATGGATGAAAAT 58.134 32.000 0.00 0.00 0.00 1.82
5444 8785 6.753279 ACTTGTCGCATAAATGGATGAAAATG 59.247 34.615 0.00 0.00 0.00 2.32
5445 8786 5.590145 TGTCGCATAAATGGATGAAAATGG 58.410 37.500 0.00 0.00 0.00 3.16
5446 8787 5.359292 TGTCGCATAAATGGATGAAAATGGA 59.641 36.000 0.00 0.00 0.00 3.41
5447 8788 6.040729 TGTCGCATAAATGGATGAAAATGGAT 59.959 34.615 0.00 0.00 0.00 3.41
5448 8789 6.364165 GTCGCATAAATGGATGAAAATGGATG 59.636 38.462 0.00 0.00 0.00 3.51
5449 8790 6.040729 TCGCATAAATGGATGAAAATGGATGT 59.959 34.615 0.00 0.00 0.00 3.06
5450 8791 7.230309 TCGCATAAATGGATGAAAATGGATGTA 59.770 33.333 0.00 0.00 0.00 2.29
5451 8792 7.326789 CGCATAAATGGATGAAAATGGATGTAC 59.673 37.037 0.00 0.00 0.00 2.90
5452 8793 8.362639 GCATAAATGGATGAAAATGGATGTACT 58.637 33.333 0.00 0.00 0.00 2.73
5456 8797 9.699410 AAATGGATGAAAATGGATGTACTAGAA 57.301 29.630 0.00 0.00 0.00 2.10
5457 8798 9.872684 AATGGATGAAAATGGATGTACTAGAAT 57.127 29.630 0.00 0.00 0.00 2.40
5458 8799 9.872684 ATGGATGAAAATGGATGTACTAGAATT 57.127 29.630 0.00 0.00 0.00 2.17
5500 8841 6.869315 TCATTTCAACGACAAGTATTTCCA 57.131 33.333 0.00 0.00 0.00 3.53
5501 8842 6.898041 TCATTTCAACGACAAGTATTTCCAG 58.102 36.000 0.00 0.00 0.00 3.86
5502 8843 6.708502 TCATTTCAACGACAAGTATTTCCAGA 59.291 34.615 0.00 0.00 0.00 3.86
5503 8844 5.917541 TTCAACGACAAGTATTTCCAGAC 57.082 39.130 0.00 0.00 0.00 3.51
5504 8845 4.951254 TCAACGACAAGTATTTCCAGACA 58.049 39.130 0.00 0.00 0.00 3.41
5505 8846 5.361427 TCAACGACAAGTATTTCCAGACAA 58.639 37.500 0.00 0.00 0.00 3.18
5506 8847 5.818336 TCAACGACAAGTATTTCCAGACAAA 59.182 36.000 0.00 0.00 0.00 2.83
5507 8848 5.924475 ACGACAAGTATTTCCAGACAAAG 57.076 39.130 0.00 0.00 0.00 2.77
5508 8849 4.755123 ACGACAAGTATTTCCAGACAAAGG 59.245 41.667 0.00 0.00 0.00 3.11
5509 8850 4.154195 CGACAAGTATTTCCAGACAAAGGG 59.846 45.833 0.00 0.00 0.00 3.95
5510 8851 5.313712 GACAAGTATTTCCAGACAAAGGGA 58.686 41.667 0.00 0.00 0.00 4.20
5511 8852 5.316987 ACAAGTATTTCCAGACAAAGGGAG 58.683 41.667 0.00 0.00 34.02 4.30
5512 8853 5.163088 ACAAGTATTTCCAGACAAAGGGAGT 60.163 40.000 0.00 0.00 34.02 3.85
5513 8854 6.043938 ACAAGTATTTCCAGACAAAGGGAGTA 59.956 38.462 0.00 0.00 34.02 2.59
5514 8855 6.893020 AGTATTTCCAGACAAAGGGAGTAT 57.107 37.500 0.00 0.00 34.02 2.12
5515 8856 7.272144 AGTATTTCCAGACAAAGGGAGTATT 57.728 36.000 0.00 0.00 34.02 1.89
5516 8857 8.388656 AGTATTTCCAGACAAAGGGAGTATTA 57.611 34.615 0.00 0.00 34.02 0.98
5517 8858 8.832735 AGTATTTCCAGACAAAGGGAGTATTAA 58.167 33.333 0.00 0.00 34.02 1.40
5518 8859 9.457436 GTATTTCCAGACAAAGGGAGTATTAAA 57.543 33.333 0.00 0.00 34.02 1.52
5519 8860 7.996098 TTTCCAGACAAAGGGAGTATTAAAG 57.004 36.000 0.00 0.00 34.02 1.85
5520 8861 6.697641 TCCAGACAAAGGGAGTATTAAAGT 57.302 37.500 0.00 0.00 0.00 2.66
5521 8862 7.086685 TCCAGACAAAGGGAGTATTAAAGTT 57.913 36.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.509575 GTCAGGTCCATGTGGCATAAAAA 59.490 43.478 0.00 0.00 34.44 1.94
4 5 3.088532 GTCAGGTCCATGTGGCATAAAA 58.911 45.455 0.00 0.00 34.44 1.52
5 6 2.040947 TGTCAGGTCCATGTGGCATAAA 59.959 45.455 0.00 0.00 34.44 1.40
6 7 1.632920 TGTCAGGTCCATGTGGCATAA 59.367 47.619 0.00 0.00 34.44 1.90
7 8 1.210234 CTGTCAGGTCCATGTGGCATA 59.790 52.381 0.00 0.00 34.44 3.14
8 9 0.034767 CTGTCAGGTCCATGTGGCAT 60.035 55.000 0.00 0.00 34.44 4.40
9 10 1.376086 CTGTCAGGTCCATGTGGCA 59.624 57.895 0.00 0.00 34.44 4.92
10 11 1.377725 CCTGTCAGGTCCATGTGGC 60.378 63.158 11.09 0.00 34.44 5.01
20 21 3.132029 TTGTGGCCCACCTGTCAGG 62.132 63.158 17.88 17.88 42.49 3.86
21 22 1.898574 GTTGTGGCCCACCTGTCAG 60.899 63.158 12.25 0.00 36.63 3.51
22 23 2.194597 GTTGTGGCCCACCTGTCA 59.805 61.111 12.25 0.00 36.63 3.58
23 24 1.898574 CAGTTGTGGCCCACCTGTC 60.899 63.158 12.25 0.00 36.63 3.51
24 25 2.195683 CAGTTGTGGCCCACCTGT 59.804 61.111 12.25 0.00 36.63 4.00
25 26 1.898574 GACAGTTGTGGCCCACCTG 60.899 63.158 12.25 14.47 36.63 4.00
26 27 1.932156 TTGACAGTTGTGGCCCACCT 61.932 55.000 12.25 0.00 36.63 4.00
27 28 1.040339 TTTGACAGTTGTGGCCCACC 61.040 55.000 12.25 0.00 32.73 4.61
28 29 0.385390 CTTTGACAGTTGTGGCCCAC 59.615 55.000 7.01 7.01 34.56 4.61
29 30 0.257328 TCTTTGACAGTTGTGGCCCA 59.743 50.000 0.00 0.00 0.00 5.36
30 31 1.067060 GTTCTTTGACAGTTGTGGCCC 59.933 52.381 0.00 0.00 0.00 5.80
31 32 1.268539 CGTTCTTTGACAGTTGTGGCC 60.269 52.381 0.00 0.00 0.00 5.36
32 33 1.268539 CCGTTCTTTGACAGTTGTGGC 60.269 52.381 0.00 0.00 0.00 5.01
33 34 2.014128 ACCGTTCTTTGACAGTTGTGG 58.986 47.619 0.00 0.00 0.00 4.17
34 35 3.757745 AACCGTTCTTTGACAGTTGTG 57.242 42.857 0.00 0.00 0.00 3.33
35 36 4.696402 TGTAAACCGTTCTTTGACAGTTGT 59.304 37.500 0.00 0.00 0.00 3.32
36 37 5.224562 TGTAAACCGTTCTTTGACAGTTG 57.775 39.130 0.00 0.00 0.00 3.16
37 38 5.883503 TTGTAAACCGTTCTTTGACAGTT 57.116 34.783 0.00 0.00 0.00 3.16
38 39 6.445357 AATTGTAAACCGTTCTTTGACAGT 57.555 33.333 0.00 0.00 0.00 3.55
39 40 8.844441 TTAAATTGTAAACCGTTCTTTGACAG 57.156 30.769 0.00 0.00 0.00 3.51
40 41 9.074443 GTTTAAATTGTAAACCGTTCTTTGACA 57.926 29.630 0.00 0.00 32.80 3.58
41 42 9.074443 TGTTTAAATTGTAAACCGTTCTTTGAC 57.926 29.630 6.95 0.00 36.79 3.18
42 43 9.074443 GTGTTTAAATTGTAAACCGTTCTTTGA 57.926 29.630 6.95 0.00 36.79 2.69
43 44 9.078753 AGTGTTTAAATTGTAAACCGTTCTTTG 57.921 29.630 6.95 0.00 36.79 2.77
44 45 9.292846 GAGTGTTTAAATTGTAAACCGTTCTTT 57.707 29.630 6.95 0.00 36.79 2.52
45 46 7.641020 CGAGTGTTTAAATTGTAAACCGTTCTT 59.359 33.333 6.95 0.00 36.79 2.52
46 47 7.127686 CGAGTGTTTAAATTGTAAACCGTTCT 58.872 34.615 6.95 1.84 36.79 3.01
47 48 6.357766 CCGAGTGTTTAAATTGTAAACCGTTC 59.642 38.462 6.95 2.49 36.79 3.95
48 49 6.183360 ACCGAGTGTTTAAATTGTAAACCGTT 60.183 34.615 6.95 0.00 36.79 4.44
49 50 5.296531 ACCGAGTGTTTAAATTGTAAACCGT 59.703 36.000 6.95 0.00 36.79 4.83
50 51 5.622041 CACCGAGTGTTTAAATTGTAAACCG 59.378 40.000 6.95 4.10 36.79 4.44
51 52 6.727215 TCACCGAGTGTTTAAATTGTAAACC 58.273 36.000 6.95 0.20 36.79 3.27
52 53 8.791355 AATCACCGAGTGTTTAAATTGTAAAC 57.209 30.769 2.96 2.96 37.78 2.01
53 54 9.239002 CAAATCACCGAGTGTTTAAATTGTAAA 57.761 29.630 0.00 0.00 34.79 2.01
54 55 7.863375 CCAAATCACCGAGTGTTTAAATTGTAA 59.137 33.333 0.00 0.00 34.79 2.41
55 56 7.364200 CCAAATCACCGAGTGTTTAAATTGTA 58.636 34.615 0.00 0.00 34.79 2.41
56 57 6.212955 CCAAATCACCGAGTGTTTAAATTGT 58.787 36.000 0.00 0.00 34.79 2.71
57 58 5.633182 CCCAAATCACCGAGTGTTTAAATTG 59.367 40.000 0.00 0.00 34.79 2.32
58 59 5.303333 ACCCAAATCACCGAGTGTTTAAATT 59.697 36.000 0.00 0.00 34.79 1.82
59 60 4.830600 ACCCAAATCACCGAGTGTTTAAAT 59.169 37.500 0.00 0.00 34.79 1.40
60 61 4.208746 ACCCAAATCACCGAGTGTTTAAA 58.791 39.130 4.33 0.00 34.79 1.52
61 62 3.822940 ACCCAAATCACCGAGTGTTTAA 58.177 40.909 4.33 0.00 34.79 1.52
62 63 3.495434 ACCCAAATCACCGAGTGTTTA 57.505 42.857 4.33 0.00 34.79 2.01
63 64 2.358322 ACCCAAATCACCGAGTGTTT 57.642 45.000 4.33 0.58 34.79 2.83
64 65 2.358322 AACCCAAATCACCGAGTGTT 57.642 45.000 4.33 0.00 34.79 3.32
65 66 2.358322 AAACCCAAATCACCGAGTGT 57.642 45.000 4.33 0.00 34.79 3.55
66 67 3.726291 AAAAACCCAAATCACCGAGTG 57.274 42.857 0.00 0.00 34.45 3.51
83 84 1.819288 TGTGGTCGGCTGTTTCAAAAA 59.181 42.857 0.00 0.00 0.00 1.94
84 85 1.133407 GTGTGGTCGGCTGTTTCAAAA 59.867 47.619 0.00 0.00 0.00 2.44
85 86 0.736053 GTGTGGTCGGCTGTTTCAAA 59.264 50.000 0.00 0.00 0.00 2.69
86 87 1.433053 CGTGTGGTCGGCTGTTTCAA 61.433 55.000 0.00 0.00 0.00 2.69
87 88 1.885388 CGTGTGGTCGGCTGTTTCA 60.885 57.895 0.00 0.00 0.00 2.69
88 89 1.433837 AACGTGTGGTCGGCTGTTTC 61.434 55.000 0.00 0.00 34.94 2.78
89 90 1.027792 AAACGTGTGGTCGGCTGTTT 61.028 50.000 0.00 0.00 34.94 2.83
90 91 1.450669 AAACGTGTGGTCGGCTGTT 60.451 52.632 0.00 0.00 34.94 3.16
91 92 2.177580 CAAACGTGTGGTCGGCTGT 61.178 57.895 0.00 0.00 34.94 4.40
92 93 2.631428 CAAACGTGTGGTCGGCTG 59.369 61.111 0.00 0.00 34.94 4.85
93 94 2.590575 CCAAACGTGTGGTCGGCT 60.591 61.111 17.28 0.00 33.63 5.52
143 144 2.752075 ACGGGTTAGGGTTCCAAAAA 57.248 45.000 0.00 0.00 0.00 1.94
144 145 3.872459 TTACGGGTTAGGGTTCCAAAA 57.128 42.857 0.00 0.00 0.00 2.44
145 146 3.138098 AGTTTACGGGTTAGGGTTCCAAA 59.862 43.478 0.00 0.00 0.00 3.28
146 147 2.710471 AGTTTACGGGTTAGGGTTCCAA 59.290 45.455 0.00 0.00 0.00 3.53
147 148 2.337849 AGTTTACGGGTTAGGGTTCCA 58.662 47.619 0.00 0.00 0.00 3.53
148 149 3.515502 ACTAGTTTACGGGTTAGGGTTCC 59.484 47.826 0.00 0.00 0.00 3.62
149 150 4.808414 ACTAGTTTACGGGTTAGGGTTC 57.192 45.455 0.00 0.00 0.00 3.62
150 151 5.333581 ACTACTAGTTTACGGGTTAGGGTT 58.666 41.667 0.00 0.00 0.00 4.11
151 152 4.935578 ACTACTAGTTTACGGGTTAGGGT 58.064 43.478 0.00 0.00 0.00 4.34
152 153 5.921962 AACTACTAGTTTACGGGTTAGGG 57.078 43.478 0.00 0.00 34.11 3.53
153 154 9.305925 CATAAAACTACTAGTTTACGGGTTAGG 57.694 37.037 13.48 1.70 46.78 2.69
154 155 8.811378 GCATAAAACTACTAGTTTACGGGTTAG 58.189 37.037 13.48 0.00 46.78 2.34
155 156 8.531146 AGCATAAAACTACTAGTTTACGGGTTA 58.469 33.333 13.48 3.57 46.78 2.85
156 157 7.389232 AGCATAAAACTACTAGTTTACGGGTT 58.611 34.615 13.48 1.65 46.78 4.11
157 158 6.939622 AGCATAAAACTACTAGTTTACGGGT 58.060 36.000 13.48 9.03 46.78 5.28
158 159 9.538508 AATAGCATAAAACTACTAGTTTACGGG 57.461 33.333 13.48 6.46 46.78 5.28
171 172 9.384764 GACTGAAGGAGTAAATAGCATAAAACT 57.615 33.333 0.00 0.00 33.83 2.66
172 173 9.162764 TGACTGAAGGAGTAAATAGCATAAAAC 57.837 33.333 0.00 0.00 33.83 2.43
173 174 9.905713 ATGACTGAAGGAGTAAATAGCATAAAA 57.094 29.630 0.00 0.00 33.83 1.52
174 175 9.330063 CATGACTGAAGGAGTAAATAGCATAAA 57.670 33.333 0.00 0.00 33.83 1.40
175 176 8.486210 ACATGACTGAAGGAGTAAATAGCATAA 58.514 33.333 0.00 0.00 33.83 1.90
176 177 8.023021 ACATGACTGAAGGAGTAAATAGCATA 57.977 34.615 0.00 0.00 33.83 3.14
177 178 6.893583 ACATGACTGAAGGAGTAAATAGCAT 58.106 36.000 0.00 0.00 33.83 3.79
178 179 6.299805 ACATGACTGAAGGAGTAAATAGCA 57.700 37.500 0.00 0.00 33.83 3.49
179 180 7.386299 CCATACATGACTGAAGGAGTAAATAGC 59.614 40.741 0.00 0.00 33.83 2.97
180 181 8.424918 ACCATACATGACTGAAGGAGTAAATAG 58.575 37.037 0.00 0.00 33.83 1.73
181 182 8.319057 ACCATACATGACTGAAGGAGTAAATA 57.681 34.615 0.00 0.00 33.83 1.40
182 183 7.200434 ACCATACATGACTGAAGGAGTAAAT 57.800 36.000 0.00 0.00 33.83 1.40
183 184 6.620877 ACCATACATGACTGAAGGAGTAAA 57.379 37.500 0.00 0.00 33.83 2.01
184 185 6.406370 CAACCATACATGACTGAAGGAGTAA 58.594 40.000 0.00 0.00 33.83 2.24
185 186 5.104941 CCAACCATACATGACTGAAGGAGTA 60.105 44.000 0.00 0.00 33.83 2.59
186 187 4.323792 CCAACCATACATGACTGAAGGAGT 60.324 45.833 0.00 0.00 37.76 3.85
187 188 4.194640 CCAACCATACATGACTGAAGGAG 58.805 47.826 0.00 0.00 0.00 3.69
188 189 3.587061 ACCAACCATACATGACTGAAGGA 59.413 43.478 0.00 0.00 0.00 3.36
189 190 3.691118 CACCAACCATACATGACTGAAGG 59.309 47.826 0.00 2.07 0.00 3.46
190 191 3.127548 GCACCAACCATACATGACTGAAG 59.872 47.826 0.00 0.00 0.00 3.02
191 192 3.081061 GCACCAACCATACATGACTGAA 58.919 45.455 0.00 0.00 0.00 3.02
192 193 2.305635 AGCACCAACCATACATGACTGA 59.694 45.455 0.00 0.00 0.00 3.41
193 194 2.715046 AGCACCAACCATACATGACTG 58.285 47.619 0.00 0.00 0.00 3.51
194 195 3.439857 AAGCACCAACCATACATGACT 57.560 42.857 0.00 0.00 0.00 3.41
195 196 4.640201 ACATAAGCACCAACCATACATGAC 59.360 41.667 0.00 0.00 0.00 3.06
196 197 4.639755 CACATAAGCACCAACCATACATGA 59.360 41.667 0.00 0.00 0.00 3.07
197 198 4.734402 GCACATAAGCACCAACCATACATG 60.734 45.833 0.00 0.00 0.00 3.21
198 199 3.381272 GCACATAAGCACCAACCATACAT 59.619 43.478 0.00 0.00 0.00 2.29
199 200 2.752354 GCACATAAGCACCAACCATACA 59.248 45.455 0.00 0.00 0.00 2.29
200 201 2.099098 GGCACATAAGCACCAACCATAC 59.901 50.000 0.00 0.00 35.83 2.39
201 202 2.025416 AGGCACATAAGCACCAACCATA 60.025 45.455 0.00 0.00 35.83 2.74
202 203 1.185315 GGCACATAAGCACCAACCAT 58.815 50.000 0.00 0.00 35.83 3.55
203 204 0.112218 AGGCACATAAGCACCAACCA 59.888 50.000 0.00 0.00 35.83 3.67
204 205 1.256812 AAGGCACATAAGCACCAACC 58.743 50.000 0.00 0.00 35.83 3.77
205 206 5.828299 TTATAAGGCACATAAGCACCAAC 57.172 39.130 0.00 0.00 35.83 3.77
206 207 7.123397 TCAAATTATAAGGCACATAAGCACCAA 59.877 33.333 0.00 0.00 35.83 3.67
207 208 6.605194 TCAAATTATAAGGCACATAAGCACCA 59.395 34.615 0.00 0.00 35.83 4.17
208 209 7.038154 TCAAATTATAAGGCACATAAGCACC 57.962 36.000 0.00 0.00 35.83 5.01
209 210 8.571336 AGATCAAATTATAAGGCACATAAGCAC 58.429 33.333 0.00 0.00 35.83 4.40
210 211 8.696043 AGATCAAATTATAAGGCACATAAGCA 57.304 30.769 0.00 0.00 35.83 3.91
211 212 9.971922 AAAGATCAAATTATAAGGCACATAAGC 57.028 29.630 0.00 0.00 0.00 3.09
292 293 9.938280 AAGACTTAAAACTTAAAACAAAGGCTT 57.062 25.926 0.00 0.00 36.30 4.35
293 294 9.938280 AAAGACTTAAAACTTAAAACAAAGGCT 57.062 25.926 0.00 0.00 32.27 4.58
306 307 8.456471 GCCGATGGTTAATAAAGACTTAAAACT 58.544 33.333 0.00 0.00 0.00 2.66
307 308 8.456471 AGCCGATGGTTAATAAAGACTTAAAAC 58.544 33.333 0.00 0.00 0.00 2.43
308 309 8.455682 CAGCCGATGGTTAATAAAGACTTAAAA 58.544 33.333 0.00 0.00 0.00 1.52
309 310 7.825270 TCAGCCGATGGTTAATAAAGACTTAAA 59.175 33.333 0.00 0.00 0.00 1.52
310 311 7.332557 TCAGCCGATGGTTAATAAAGACTTAA 58.667 34.615 0.00 0.00 0.00 1.85
311 312 6.880484 TCAGCCGATGGTTAATAAAGACTTA 58.120 36.000 0.00 0.00 0.00 2.24
312 313 5.741011 TCAGCCGATGGTTAATAAAGACTT 58.259 37.500 0.00 0.00 0.00 3.01
313 314 5.353394 TCAGCCGATGGTTAATAAAGACT 57.647 39.130 0.00 0.00 0.00 3.24
314 315 5.990408 CATCAGCCGATGGTTAATAAAGAC 58.010 41.667 1.67 0.00 44.59 3.01
330 331 2.160417 CACCGAGAACTTTTCATCAGCC 59.840 50.000 0.00 0.00 0.00 4.85
354 359 2.271944 AAGTACGCAGAAAGGGCTTT 57.728 45.000 0.00 0.00 35.14 3.51
364 369 3.057734 AGACCGAAGAAAAAGTACGCAG 58.942 45.455 0.00 0.00 0.00 5.18
378 383 1.606224 GCCGTCTTTGGTTAGACCGAA 60.606 52.381 0.00 0.18 42.58 4.30
412 417 3.530104 CGCGCTGACGGTCGTTAC 61.530 66.667 5.56 0.00 40.57 2.50
413 418 4.029186 ACGCGCTGACGGTCGTTA 62.029 61.111 5.73 0.00 35.00 3.18
449 454 4.760047 CGTCTTGTGCGGGGAGGG 62.760 72.222 0.00 0.00 0.00 4.30
450 455 3.691342 TCGTCTTGTGCGGGGAGG 61.691 66.667 0.00 0.00 0.00 4.30
451 456 2.432628 GTCGTCTTGTGCGGGGAG 60.433 66.667 0.00 0.00 0.00 4.30
452 457 3.998672 GGTCGTCTTGTGCGGGGA 61.999 66.667 0.00 0.00 0.00 4.81
517 522 3.646715 CGGAAGGTGCCCAAGGGA 61.647 66.667 9.92 0.00 37.50 4.20
548 575 4.459089 GTGGCTGAGGCTCCGTCC 62.459 72.222 12.86 11.58 38.73 4.79
549 576 4.803426 CGTGGCTGAGGCTCCGTC 62.803 72.222 12.86 7.95 38.73 4.79
553 580 3.240134 TTCCACGTGGCTGAGGCTC 62.240 63.158 30.25 7.79 38.73 4.70
558 585 4.308458 CGGGTTCCACGTGGCTGA 62.308 66.667 30.25 14.96 34.44 4.26
609 637 1.143969 GGACGCGTTTATCCACCTCG 61.144 60.000 15.53 0.00 34.87 4.63
610 638 0.808847 GGGACGCGTTTATCCACCTC 60.809 60.000 15.53 0.00 36.65 3.85
626 654 0.535335 CGACGAAAGGAGGATTGGGA 59.465 55.000 0.00 0.00 0.00 4.37
635 664 2.348888 GGAGGAGGCGACGAAAGGA 61.349 63.158 0.00 0.00 0.00 3.36
637 666 0.108138 ATTGGAGGAGGCGACGAAAG 60.108 55.000 0.00 0.00 0.00 2.62
685 715 4.179599 GGAGGGGAGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
686 716 4.761304 AGGAGGGGAGGAGGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
687 717 4.179599 GAGGAGGGGAGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
802 862 4.785453 GCAGCCTGGTCCTTCCGG 62.785 72.222 0.00 0.00 42.06 5.14
803 863 3.672295 GAGCAGCCTGGTCCTTCCG 62.672 68.421 12.87 0.00 38.84 4.30
804 864 2.270527 GAGCAGCCTGGTCCTTCC 59.729 66.667 12.87 0.00 38.84 3.46
1063 1140 2.356194 GGCAAGCACCAAAAGCGG 60.356 61.111 0.00 0.00 37.01 5.52
1081 1158 4.767255 CTCCCCACTCAGCGGCAC 62.767 72.222 1.45 0.00 0.00 5.01
1104 1186 2.857889 CCAAATCCCCCACCACCA 59.142 61.111 0.00 0.00 0.00 4.17
1225 1310 2.017559 TTTTGACCAAAACCCGCCCG 62.018 55.000 4.00 0.00 35.57 6.13
1272 1362 2.932614 CACCTCGACTCAATTTGCTAGG 59.067 50.000 0.00 0.00 0.00 3.02
1276 1366 0.169009 GCCACCTCGACTCAATTTGC 59.831 55.000 0.00 0.00 0.00 3.68
1277 1367 1.813513 AGCCACCTCGACTCAATTTG 58.186 50.000 0.00 0.00 0.00 2.32
1278 1368 2.154462 CAAGCCACCTCGACTCAATTT 58.846 47.619 0.00 0.00 0.00 1.82
1279 1369 1.347707 TCAAGCCACCTCGACTCAATT 59.652 47.619 0.00 0.00 0.00 2.32
1285 1375 0.033504 TCAACTCAAGCCACCTCGAC 59.966 55.000 0.00 0.00 0.00 4.20
1328 1422 8.730680 AGCATTACAGAAAACTACCAATAACAG 58.269 33.333 0.00 0.00 0.00 3.16
1353 2354 7.420800 ACAAATCTAGAGTTTTCACAGCAAAG 58.579 34.615 1.94 0.00 0.00 2.77
1471 2472 7.466804 TGTCTTGGTGGGAGAAATAACTTTAT 58.533 34.615 0.00 0.00 0.00 1.40
1472 2473 6.843752 TGTCTTGGTGGGAGAAATAACTTTA 58.156 36.000 0.00 0.00 0.00 1.85
1473 2474 5.701224 TGTCTTGGTGGGAGAAATAACTTT 58.299 37.500 0.00 0.00 0.00 2.66
1483 2484 2.638480 TGAAGTTGTCTTGGTGGGAG 57.362 50.000 0.00 0.00 33.64 4.30
1495 2496 7.330262 ACAATAAAAATAGCCCCATGAAGTTG 58.670 34.615 0.00 0.00 0.00 3.16
1619 2620 7.209475 TCTTCTGAACAATTTTGACCATTTCC 58.791 34.615 0.00 0.00 0.00 3.13
1670 2671 4.813697 GCACCATGAGAATAAAGGAGACTC 59.186 45.833 0.00 0.00 42.68 3.36
1677 2678 9.455847 GCTAATTTAAGCACCATGAGAATAAAG 57.544 33.333 0.00 0.00 42.30 1.85
2065 3070 6.683974 AATTGCAGATATGACTGTTACCAC 57.316 37.500 0.00 0.00 39.73 4.16
2109 3114 4.716794 ACCACAAAAATGTCAATGCCAAT 58.283 34.783 0.00 0.00 0.00 3.16
2112 3117 8.491331 AATATAACCACAAAAATGTCAATGCC 57.509 30.769 0.00 0.00 0.00 4.40
2138 3143 7.173907 ACAAGTGAGACAGAAATCACAATAAGG 59.826 37.037 7.94 0.00 46.63 2.69
2143 3148 5.647658 ACAACAAGTGAGACAGAAATCACAA 59.352 36.000 7.94 0.00 46.63 3.33
2145 3150 5.525378 AGACAACAAGTGAGACAGAAATCAC 59.475 40.000 0.00 0.00 44.97 3.06
2153 3158 4.471904 ACAGAAGACAACAAGTGAGACA 57.528 40.909 0.00 0.00 0.00 3.41
2154 3159 5.582665 AGAAACAGAAGACAACAAGTGAGAC 59.417 40.000 0.00 0.00 0.00 3.36
2155 3160 5.734720 AGAAACAGAAGACAACAAGTGAGA 58.265 37.500 0.00 0.00 0.00 3.27
2156 3161 6.428385 AAGAAACAGAAGACAACAAGTGAG 57.572 37.500 0.00 0.00 0.00 3.51
2157 3162 6.206634 ACAAAGAAACAGAAGACAACAAGTGA 59.793 34.615 0.00 0.00 0.00 3.41
2158 3163 6.381801 ACAAAGAAACAGAAGACAACAAGTG 58.618 36.000 0.00 0.00 0.00 3.16
2159 3164 6.575162 ACAAAGAAACAGAAGACAACAAGT 57.425 33.333 0.00 0.00 0.00 3.16
2160 3165 7.752695 AGTACAAAGAAACAGAAGACAACAAG 58.247 34.615 0.00 0.00 0.00 3.16
2161 3166 7.681939 AGTACAAAGAAACAGAAGACAACAA 57.318 32.000 0.00 0.00 0.00 2.83
2162 3167 8.780846 TTAGTACAAAGAAACAGAAGACAACA 57.219 30.769 0.00 0.00 0.00 3.33
2163 3168 9.651718 CATTAGTACAAAGAAACAGAAGACAAC 57.348 33.333 0.00 0.00 0.00 3.32
2164 3169 8.836413 CCATTAGTACAAAGAAACAGAAGACAA 58.164 33.333 0.00 0.00 0.00 3.18
2225 3230 6.182039 TGCTGGATATTCAGAAAAGAAACG 57.818 37.500 15.70 0.00 36.93 3.60
2475 3486 2.769663 ACGTGGACATTATCTAAGGCCA 59.230 45.455 5.01 0.00 0.00 5.36
2532 3543 9.769093 GTAAAAGATGTTGCGTTAACTGATATT 57.231 29.630 3.71 0.00 40.05 1.28
2540 3551 5.761234 ACCTCTGTAAAAGATGTTGCGTTAA 59.239 36.000 0.00 0.00 30.30 2.01
2641 3652 3.072915 TGGGATATGCAGGTGAACCATAG 59.927 47.826 1.62 0.00 38.89 2.23
2756 3768 3.439857 AGAACAGATAGCTTGGGCAAA 57.560 42.857 0.00 0.00 41.70 3.68
2945 3957 8.877864 AATAGGTTATTTCATGAACTTCACCA 57.122 30.769 20.23 11.76 0.00 4.17
3117 4129 5.619757 CGAACACCACGGTACACTAAGATAA 60.620 44.000 0.00 0.00 0.00 1.75
3143 4155 8.579006 TCATGCTAAACTTCAAATTCACTTGAT 58.421 29.630 0.00 0.00 35.31 2.57
3187 4225 3.006430 TCATTTAGACGGCACAGAACTGA 59.994 43.478 8.87 0.00 0.00 3.41
3214 4343 1.227943 GCAGTGTGGCCTGAACTGA 60.228 57.895 26.99 0.00 43.22 3.41
3255 4384 9.308000 TCATTCCTAAACAACAGAAACCATAAT 57.692 29.630 0.00 0.00 0.00 1.28
3264 4393 4.287067 AGCTCCTCATTCCTAAACAACAGA 59.713 41.667 0.00 0.00 0.00 3.41
3288 4417 6.834168 TTTATTTCTAGGCCTTGTTTCAGG 57.166 37.500 12.58 0.00 36.95 3.86
3315 4444 3.459145 TGCAAGTACACTTTGTAAGCGA 58.541 40.909 0.00 0.00 34.21 4.93
3529 4658 7.337938 TCAGGAATAAGTAGATTGTGCATCAA 58.662 34.615 0.00 0.00 40.53 2.57
3532 4661 6.543831 GGTTCAGGAATAAGTAGATTGTGCAT 59.456 38.462 0.00 0.00 0.00 3.96
3533 4662 5.880332 GGTTCAGGAATAAGTAGATTGTGCA 59.120 40.000 0.00 0.00 0.00 4.57
3578 4707 7.869016 TTGTTCTTTCTACAGATACAGAACG 57.131 36.000 15.09 0.00 38.02 3.95
3633 4762 1.098050 GGGCATGATCACCAACACTC 58.902 55.000 0.00 0.00 0.00 3.51
3745 4874 5.643421 ATCATATCCTGCTCTTTTGTCCT 57.357 39.130 0.00 0.00 0.00 3.85
3768 4897 2.303022 CAAGGTGAGGCTTAGAAGGTCA 59.697 50.000 0.00 0.00 0.00 4.02
3783 4912 2.751166 CAGGAGGACTGTACAAGGTG 57.249 55.000 0.00 0.00 42.42 4.00
3900 5030 5.336451 GGAAGGGTAATGTTGTCCATTTGAC 60.336 44.000 0.00 0.00 41.01 3.18
3954 5084 6.308524 CGACGTAATTGTTGTATGGAGTGTAA 59.691 38.462 0.00 0.00 0.00 2.41
3981 5111 2.399607 TTCACTTTGGGCCCAGGGT 61.400 57.895 26.87 23.62 0.00 4.34
4188 5318 1.551019 AAGGAGCCGGGTAAGGTGTC 61.551 60.000 5.91 0.00 0.00 3.67
4248 5378 0.036875 GACTGGGGTTGAGAGTTGGG 59.963 60.000 0.00 0.00 0.00 4.12
4254 5384 1.204146 GCATAGGACTGGGGTTGAGA 58.796 55.000 0.00 0.00 0.00 3.27
4256 5386 1.004277 GTTGCATAGGACTGGGGTTGA 59.996 52.381 0.00 0.00 0.00 3.18
4257 5387 1.271871 TGTTGCATAGGACTGGGGTTG 60.272 52.381 0.00 0.00 0.00 3.77
4260 5390 0.749454 GCTGTTGCATAGGACTGGGG 60.749 60.000 0.00 0.00 39.41 4.96
4281 5411 3.332919 TGCATGAGAAACAGAAGAGCTC 58.667 45.455 5.27 5.27 0.00 4.09
4289 5419 2.468777 GCGTTGTTTGCATGAGAAACAG 59.531 45.455 17.76 11.72 42.63 3.16
4417 5547 3.549471 CCGAAACTCTTCACATCGATCAG 59.451 47.826 0.00 0.00 35.65 2.90
4548 5678 5.752955 GCAAATGTACAAACCAAATGACACT 59.247 36.000 0.00 0.00 0.00 3.55
4636 5766 9.941325 ATTATGCTCTACCATCTCTTAAGAATG 57.059 33.333 6.63 12.17 34.49 2.67
4742 5872 2.830370 GCGATGAAAGGCAGGGGG 60.830 66.667 0.00 0.00 0.00 5.40
4828 5959 5.885881 ACTCTAGTGATCTAAACGCTCTTG 58.114 41.667 0.00 0.00 0.00 3.02
4854 5985 9.947669 GCGTTTAGATCACTAGAGTTTAGATTA 57.052 33.333 0.00 0.00 0.00 1.75
4855 5986 8.688151 AGCGTTTAGATCACTAGAGTTTAGATT 58.312 33.333 0.00 0.00 0.00 2.40
4856 5987 8.228035 AGCGTTTAGATCACTAGAGTTTAGAT 57.772 34.615 0.00 0.00 0.00 1.98
4860 5991 6.518208 AGAGCGTTTAGATCACTAGAGTTT 57.482 37.500 0.00 0.00 37.82 2.66
4861 5992 6.518208 AAGAGCGTTTAGATCACTAGAGTT 57.482 37.500 0.00 0.00 37.82 3.01
4862 5993 7.811117 ATAAGAGCGTTTAGATCACTAGAGT 57.189 36.000 0.00 0.00 37.82 3.24
4872 6003 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4873 6004 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4875 6006 7.977853 TCTCCGTAAAGAAATATAAGAGCGTTT 59.022 33.333 0.00 0.00 0.00 3.60
4876 6007 7.486647 TCTCCGTAAAGAAATATAAGAGCGTT 58.513 34.615 0.00 0.00 0.00 4.84
5009 8329 2.673523 CCAGGAGGGCAAGACAGG 59.326 66.667 0.00 0.00 0.00 4.00
5059 8379 1.550524 AGACAATAGGCTTGCGTCTCA 59.449 47.619 0.00 0.00 31.39 3.27
5073 8393 7.654022 TTCTAAGGGAAAACACAAAGACAAT 57.346 32.000 0.00 0.00 0.00 2.71
5215 8547 1.600957 CTAGGTTGGCATCAATCAGCG 59.399 52.381 0.00 0.00 36.49 5.18
5238 8570 7.712639 TCTGTGCTCATCAATTCTACCTTAATC 59.287 37.037 0.00 0.00 0.00 1.75
5385 8726 3.898123 GAGGGAGTATACTGGATTGCTGA 59.102 47.826 10.90 0.00 0.00 4.26
5401 8742 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5402 8743 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
5403 8744 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5404 8745 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5405 8746 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5406 8747 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
5407 8748 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5408 8749 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
5409 8750 1.717194 TGCGACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
5410 8751 2.684001 ATGCGACAAGTAATTCCGGA 57.316 45.000 0.00 0.00 0.00 5.14
5411 8752 4.868450 TTTATGCGACAAGTAATTCCGG 57.132 40.909 0.00 0.00 0.00 5.14
5412 8753 5.007234 TCCATTTATGCGACAAGTAATTCCG 59.993 40.000 0.00 0.00 0.00 4.30
5413 8754 6.371809 TCCATTTATGCGACAAGTAATTCC 57.628 37.500 0.00 0.00 0.00 3.01
5414 8755 7.639039 TCATCCATTTATGCGACAAGTAATTC 58.361 34.615 0.00 0.00 0.00 2.17
5415 8756 7.566760 TCATCCATTTATGCGACAAGTAATT 57.433 32.000 0.00 0.00 0.00 1.40
5416 8757 7.566760 TTCATCCATTTATGCGACAAGTAAT 57.433 32.000 0.00 0.00 0.00 1.89
5417 8758 6.993786 TTCATCCATTTATGCGACAAGTAA 57.006 33.333 0.00 0.00 0.00 2.24
5418 8759 6.993786 TTTCATCCATTTATGCGACAAGTA 57.006 33.333 0.00 0.00 0.00 2.24
5419 8760 5.895636 TTTCATCCATTTATGCGACAAGT 57.104 34.783 0.00 0.00 0.00 3.16
5420 8761 6.199531 CCATTTTCATCCATTTATGCGACAAG 59.800 38.462 0.00 0.00 0.00 3.16
5421 8762 6.041511 CCATTTTCATCCATTTATGCGACAA 58.958 36.000 0.00 0.00 0.00 3.18
5422 8763 5.359292 TCCATTTTCATCCATTTATGCGACA 59.641 36.000 0.00 0.00 0.00 4.35
5423 8764 5.830912 TCCATTTTCATCCATTTATGCGAC 58.169 37.500 0.00 0.00 0.00 5.19
5424 8765 6.040729 ACATCCATTTTCATCCATTTATGCGA 59.959 34.615 0.00 0.00 0.00 5.10
5425 8766 6.218019 ACATCCATTTTCATCCATTTATGCG 58.782 36.000 0.00 0.00 0.00 4.73
5426 8767 8.362639 AGTACATCCATTTTCATCCATTTATGC 58.637 33.333 0.00 0.00 0.00 3.14
5430 8771 9.699410 TTCTAGTACATCCATTTTCATCCATTT 57.301 29.630 0.00 0.00 0.00 2.32
5431 8772 9.872684 ATTCTAGTACATCCATTTTCATCCATT 57.127 29.630 0.00 0.00 0.00 3.16
5432 8773 9.872684 AATTCTAGTACATCCATTTTCATCCAT 57.127 29.630 0.00 0.00 0.00 3.41
5474 8815 9.173021 TGGAAATACTTGTCGTTGAAATGATAT 57.827 29.630 0.00 0.00 0.00 1.63
5475 8816 8.554835 TGGAAATACTTGTCGTTGAAATGATA 57.445 30.769 0.00 0.00 0.00 2.15
5476 8817 7.390440 TCTGGAAATACTTGTCGTTGAAATGAT 59.610 33.333 0.00 0.00 0.00 2.45
5477 8818 6.708502 TCTGGAAATACTTGTCGTTGAAATGA 59.291 34.615 0.00 0.00 0.00 2.57
5478 8819 6.797033 GTCTGGAAATACTTGTCGTTGAAATG 59.203 38.462 0.00 0.00 0.00 2.32
5479 8820 6.485313 TGTCTGGAAATACTTGTCGTTGAAAT 59.515 34.615 0.00 0.00 0.00 2.17
5480 8821 5.818336 TGTCTGGAAATACTTGTCGTTGAAA 59.182 36.000 0.00 0.00 0.00 2.69
5481 8822 5.361427 TGTCTGGAAATACTTGTCGTTGAA 58.639 37.500 0.00 0.00 0.00 2.69
5482 8823 4.951254 TGTCTGGAAATACTTGTCGTTGA 58.049 39.130 0.00 0.00 0.00 3.18
5483 8824 5.666969 TTGTCTGGAAATACTTGTCGTTG 57.333 39.130 0.00 0.00 0.00 4.10
5484 8825 5.238650 CCTTTGTCTGGAAATACTTGTCGTT 59.761 40.000 0.00 0.00 0.00 3.85
5485 8826 4.755123 CCTTTGTCTGGAAATACTTGTCGT 59.245 41.667 0.00 0.00 0.00 4.34
5486 8827 4.154195 CCCTTTGTCTGGAAATACTTGTCG 59.846 45.833 0.00 0.00 0.00 4.35
5487 8828 5.313712 TCCCTTTGTCTGGAAATACTTGTC 58.686 41.667 0.00 0.00 0.00 3.18
5488 8829 5.163088 ACTCCCTTTGTCTGGAAATACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
5489 8830 5.316987 ACTCCCTTTGTCTGGAAATACTTG 58.683 41.667 0.00 0.00 0.00 3.16
5490 8831 5.584551 ACTCCCTTTGTCTGGAAATACTT 57.415 39.130 0.00 0.00 0.00 2.24
5491 8832 6.893020 ATACTCCCTTTGTCTGGAAATACT 57.107 37.500 0.00 0.00 0.00 2.12
5492 8833 9.457436 TTTAATACTCCCTTTGTCTGGAAATAC 57.543 33.333 0.00 0.00 0.00 1.89
5493 8834 9.681062 CTTTAATACTCCCTTTGTCTGGAAATA 57.319 33.333 0.00 0.00 0.00 1.40
5494 8835 8.170730 ACTTTAATACTCCCTTTGTCTGGAAAT 58.829 33.333 0.00 0.00 0.00 2.17
5495 8836 7.523415 ACTTTAATACTCCCTTTGTCTGGAAA 58.477 34.615 0.00 0.00 0.00 3.13
5496 8837 7.086685 ACTTTAATACTCCCTTTGTCTGGAA 57.913 36.000 0.00 0.00 0.00 3.53
5497 8838 6.697641 ACTTTAATACTCCCTTTGTCTGGA 57.302 37.500 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.