Multiple sequence alignment - TraesCS1B01G308000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G308000 chr1B 100.000 3683 0 0 547 4229 530669356 530665674 0.000000e+00 6802.0
1 TraesCS1B01G308000 chr1B 88.449 909 95 8 2971 3873 530658509 530657605 0.000000e+00 1088.0
2 TraesCS1B01G308000 chr1B 85.079 630 78 12 1502 2122 530659616 530658994 3.060000e-176 628.0
3 TraesCS1B01G308000 chr1B 100.000 187 0 0 1 187 530669902 530669716 3.450000e-91 346.0
4 TraesCS1B01G308000 chr1B 97.600 125 3 0 1 125 342422925 342423049 1.010000e-51 215.0
5 TraesCS1B01G308000 chr1B 94.656 131 7 0 547 677 416765080 416764950 2.200000e-48 204.0
6 TraesCS1B01G308000 chr1B 100.000 107 0 0 4549 4655 530665354 530665248 1.020000e-46 198.0
7 TraesCS1B01G308000 chr1B 78.667 300 37 15 1042 1315 530660298 530660000 1.720000e-39 174.0
8 TraesCS1B01G308000 chr1B 80.588 170 23 7 1316 1478 530659960 530659794 6.330000e-24 122.0
9 TraesCS1B01G308000 chr1B 92.063 63 5 0 123 185 360372825 360372763 6.420000e-14 89.8
10 TraesCS1B01G308000 chr1B 93.333 60 4 0 120 179 598327616 598327675 6.420000e-14 89.8
11 TraesCS1B01G308000 chr1B 95.238 42 2 0 2283 2324 148441391 148441432 3.010000e-07 67.6
12 TraesCS1B01G308000 chr1B 93.023 43 3 0 2283 2325 89696476 89696518 3.890000e-06 63.9
13 TraesCS1B01G308000 chr1A 94.968 2524 86 12 1459 3945 493282909 493280390 0.000000e+00 3919.0
14 TraesCS1B01G308000 chr1A 83.413 838 109 21 1316 2134 493274068 493273242 0.000000e+00 750.0
15 TraesCS1B01G308000 chr1A 89.032 465 40 4 2971 3425 493272061 493271598 2.430000e-157 566.0
16 TraesCS1B01G308000 chr1A 90.796 402 31 3 1067 1465 493284205 493283807 2.470000e-147 532.0
17 TraesCS1B01G308000 chr1A 86.102 295 28 9 3946 4228 49974823 49975116 5.850000e-79 305.0
18 TraesCS1B01G308000 chr1A 88.360 189 20 2 3685 3873 493271606 493271420 4.690000e-55 226.0
19 TraesCS1B01G308000 chr1A 95.312 128 5 1 548 675 45819907 45820033 7.900000e-48 202.0
20 TraesCS1B01G308000 chr1A 86.806 144 13 5 1067 1204 493279573 493279430 6.240000e-34 156.0
21 TraesCS1B01G308000 chr1A 82.955 176 15 9 2645 2806 493272323 493272149 1.350000e-30 145.0
22 TraesCS1B01G308000 chr1D 90.819 1111 72 9 2804 3894 391984728 391985828 0.000000e+00 1459.0
23 TraesCS1B01G308000 chr1D 88.158 912 98 9 2971 3877 392020577 392021483 0.000000e+00 1077.0
24 TraesCS1B01G308000 chr1D 91.638 586 28 8 1698 2282 391969926 391970491 0.000000e+00 791.0
25 TraesCS1B01G308000 chr1D 84.010 813 108 13 1316 2119 392019299 392020098 0.000000e+00 761.0
26 TraesCS1B01G308000 chr1D 96.173 392 11 2 1317 1704 391969420 391969811 5.080000e-179 638.0
27 TraesCS1B01G308000 chr1D 93.386 378 17 6 2326 2698 391970493 391970867 1.890000e-153 553.0
28 TraesCS1B01G308000 chr1D 96.124 129 4 1 548 676 339329347 339329474 4.720000e-50 209.0
29 TraesCS1B01G308000 chr1D 91.156 147 9 2 2693 2837 391984649 391984793 3.670000e-46 196.0
30 TraesCS1B01G308000 chr1D 96.429 56 2 0 3890 3945 392016002 392016057 4.960000e-15 93.5
31 TraesCS1B01G308000 chr1D 94.118 51 3 0 3891 3941 392021479 392021529 1.390000e-10 78.7
32 TraesCS1B01G308000 chr1D 95.238 42 2 0 2283 2324 93119116 93119157 3.010000e-07 67.6
33 TraesCS1B01G308000 chr3B 95.775 284 11 1 3946 4228 826141830 826142113 1.530000e-124 457.0
34 TraesCS1B01G308000 chr3B 94.595 296 12 3 3935 4229 347923025 347923317 5.490000e-124 455.0
35 TraesCS1B01G308000 chr3B 95.139 288 11 3 3936 4220 733247336 733247049 7.100000e-123 451.0
36 TraesCS1B01G308000 chr3B 97.600 125 3 0 1 125 429012778 429012902 1.010000e-51 215.0
37 TraesCS1B01G308000 chr3B 97.561 123 3 0 3 125 259055276 259055154 1.310000e-50 211.0
38 TraesCS1B01G308000 chr3B 99.065 107 1 0 4549 4655 347923384 347923490 4.750000e-45 193.0
39 TraesCS1B01G308000 chr6B 95.088 285 12 2 3946 4228 558352844 558352560 9.190000e-122 448.0
40 TraesCS1B01G308000 chr6B 97.600 125 3 0 1 125 461030580 461030704 1.010000e-51 215.0
41 TraesCS1B01G308000 chr6B 97.581 124 3 0 1 124 294417531 294417654 3.650000e-51 213.0
42 TraesCS1B01G308000 chr6B 96.094 128 5 0 1 128 485344806 485344679 4.720000e-50 209.0
43 TraesCS1B01G308000 chr6B 97.196 107 3 0 4549 4655 558352493 558352387 1.030000e-41 182.0
44 TraesCS1B01G308000 chr5A 92.308 286 20 2 3946 4229 532559725 532560010 5.610000e-109 405.0
45 TraesCS1B01G308000 chr5A 94.030 134 7 1 548 681 578848711 578848843 7.900000e-48 202.0
46 TraesCS1B01G308000 chr5A 93.651 63 4 0 123 185 607277861 607277799 1.380000e-15 95.3
47 TraesCS1B01G308000 chr5A 94.872 39 2 0 2283 2321 58727909 58727947 1.400000e-05 62.1
48 TraesCS1B01G308000 chr5B 83.618 293 36 8 3946 4228 387072230 387071940 9.930000e-67 265.0
49 TraesCS1B01G308000 chr5B 96.875 128 4 0 1 128 339861902 339862029 1.010000e-51 215.0
50 TraesCS1B01G308000 chr5B 93.333 45 3 0 2283 2327 315158300 315158256 3.010000e-07 67.6
51 TraesCS1B01G308000 chr7D 96.899 129 3 1 548 676 599254120 599254247 1.010000e-51 215.0
52 TraesCS1B01G308000 chr7D 95.349 129 5 1 548 676 111351466 111351593 2.200000e-48 204.0
53 TraesCS1B01G308000 chr7D 96.667 60 2 0 120 179 16791108 16791167 2.960000e-17 100.0
54 TraesCS1B01G308000 chr6A 96.875 128 3 1 548 675 586372573 586372447 3.650000e-51 213.0
55 TraesCS1B01G308000 chr6A 92.857 42 3 0 2283 2324 6030117 6030158 1.400000e-05 62.1
56 TraesCS1B01G308000 chr4B 96.800 125 4 0 1 125 176419537 176419661 4.720000e-50 209.0
57 TraesCS1B01G308000 chr4B 96.800 125 4 0 1 125 307229345 307229221 4.720000e-50 209.0
58 TraesCS1B01G308000 chr6D 96.094 128 4 1 548 675 80593359 80593233 1.700000e-49 207.0
59 TraesCS1B01G308000 chr6D 96.970 33 1 0 2288 2320 303623426 303623458 6.510000e-04 56.5
60 TraesCS1B01G308000 chr4D 95.349 129 6 0 547 675 72383947 72384075 6.110000e-49 206.0
61 TraesCS1B01G308000 chrUn 83.710 221 27 6 3946 4158 40169330 40169549 2.840000e-47 200.0
62 TraesCS1B01G308000 chr2D 78.947 285 40 16 3944 4215 565534725 565534448 4.790000e-40 176.0
63 TraesCS1B01G308000 chr2D 95.000 60 3 0 120 179 195229246 195229305 1.380000e-15 95.3
64 TraesCS1B01G308000 chr2A 98.276 58 1 0 123 180 471780454 471780397 8.240000e-18 102.0
65 TraesCS1B01G308000 chr4A 95.000 60 3 0 120 179 358879601 358879660 1.380000e-15 95.3
66 TraesCS1B01G308000 chr7A 92.063 63 5 0 123 185 119959215 119959153 6.420000e-14 89.8
67 TraesCS1B01G308000 chr7A 92.063 63 5 0 123 185 245597889 245597827 6.420000e-14 89.8
68 TraesCS1B01G308000 chr7B 92.857 42 3 0 2283 2324 506755408 506755367 1.400000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G308000 chr1B 530665248 530669902 4654 True 2448.666667 6802 100.000000 1 4655 3 chr1B.!!$R4 4654
1 TraesCS1B01G308000 chr1B 530657605 530660298 2693 True 503.000000 1088 83.195750 1042 3873 4 chr1B.!!$R3 2831
2 TraesCS1B01G308000 chr1A 493279430 493284205 4775 True 1535.666667 3919 90.856667 1067 3945 3 chr1A.!!$R2 2878
3 TraesCS1B01G308000 chr1A 493271420 493274068 2648 True 421.750000 750 85.940000 1316 3873 4 chr1A.!!$R1 2557
4 TraesCS1B01G308000 chr1D 391984649 391985828 1179 False 827.500000 1459 90.987500 2693 3894 2 chr1D.!!$F4 1201
5 TraesCS1B01G308000 chr1D 391969420 391970867 1447 False 660.666667 791 93.732333 1317 2698 3 chr1D.!!$F3 1381
6 TraesCS1B01G308000 chr1D 392016002 392021529 5527 False 502.550000 1077 90.678750 1316 3945 4 chr1D.!!$F5 2629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 924 0.033601 CCATTCCCCCATCAAACCGA 60.034 55.0 0.00 0.0 0.00 4.69 F
948 949 0.109689 CACGTCCTCTGACCTCGTTC 60.110 60.0 0.00 0.0 38.32 3.95 F
2236 5785 0.502275 GTTGCGCCACATGAAAAACG 59.498 50.0 4.18 0.0 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 5754 1.661509 GCGCAACCAAACAGCTTCC 60.662 57.895 0.3 0.0 0.00 3.46 R
2432 5986 5.185635 CCTGCTTGGTTCATAGGAATTTCAA 59.814 40.000 0.0 0.0 35.05 2.69 R
3974 7726 0.108186 GCTGTGCCCCTTTTATTGCC 60.108 55.000 0.0 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.441695 CTTCGAGCAGGCCGAGCA 62.442 66.667 22.53 2.22 37.35 4.26
22 23 4.441695 TTCGAGCAGGCCGAGCAG 62.442 66.667 22.53 16.19 37.35 4.24
25 26 4.087892 GAGCAGGCCGAGCAGGAA 62.088 66.667 22.53 0.00 45.00 3.36
26 27 4.093291 AGCAGGCCGAGCAGGAAG 62.093 66.667 22.53 0.00 45.00 3.46
27 28 4.087892 GCAGGCCGAGCAGGAAGA 62.088 66.667 16.97 0.00 45.00 2.87
29 30 3.764466 AGGCCGAGCAGGAAGACG 61.764 66.667 0.00 0.00 45.00 4.18
32 33 2.202676 CCGAGCAGGAAGACGAGC 60.203 66.667 0.00 0.00 45.00 5.03
35 36 1.153667 GAGCAGGAAGACGAGCAGG 60.154 63.158 0.00 0.00 0.00 4.85
36 37 1.882989 GAGCAGGAAGACGAGCAGGT 61.883 60.000 0.00 0.00 0.00 4.00
37 38 1.446966 GCAGGAAGACGAGCAGGTC 60.447 63.158 0.00 0.00 37.19 3.85
38 39 1.967535 CAGGAAGACGAGCAGGTCA 59.032 57.895 9.44 0.00 39.42 4.02
39 40 0.108898 CAGGAAGACGAGCAGGTCAG 60.109 60.000 9.44 0.00 39.42 3.51
40 41 1.446966 GGAAGACGAGCAGGTCAGC 60.447 63.158 9.44 1.59 39.42 4.26
41 42 1.446966 GAAGACGAGCAGGTCAGCC 60.447 63.158 9.44 0.00 39.42 4.85
42 43 2.844072 GAAGACGAGCAGGTCAGCCC 62.844 65.000 9.44 0.00 39.42 5.19
43 44 3.695606 GACGAGCAGGTCAGCCCA 61.696 66.667 0.00 0.00 36.91 5.36
45 46 3.385384 CGAGCAGGTCAGCCCAGA 61.385 66.667 0.00 0.00 34.66 3.86
46 47 2.267324 GAGCAGGTCAGCCCAGAC 59.733 66.667 0.00 0.00 37.80 3.51
48 49 3.695606 GCAGGTCAGCCCAGACGA 61.696 66.667 0.00 0.00 39.42 4.20
50 51 1.374758 CAGGTCAGCCCAGACGAAC 60.375 63.158 0.00 0.00 39.42 3.95
52 53 1.374758 GGTCAGCCCAGACGAACAG 60.375 63.158 0.00 0.00 39.42 3.16
53 54 1.374758 GTCAGCCCAGACGAACAGG 60.375 63.158 0.00 0.00 0.00 4.00
56 57 4.373116 GCCCAGACGAACAGGCGA 62.373 66.667 0.00 0.00 35.30 5.54
57 58 2.432628 CCCAGACGAACAGGCGAC 60.433 66.667 0.00 0.00 34.83 5.19
59 60 2.805353 CAGACGAACAGGCGACGG 60.805 66.667 0.00 0.00 34.83 4.79
60 61 2.981909 AGACGAACAGGCGACGGA 60.982 61.111 0.00 0.00 34.83 4.69
61 62 2.804090 GACGAACAGGCGACGGAC 60.804 66.667 0.00 0.00 34.83 4.79
62 63 4.695231 ACGAACAGGCGACGGACG 62.695 66.667 0.00 3.10 45.66 4.79
64 65 4.047059 GAACAGGCGACGGACGGA 62.047 66.667 0.00 0.00 42.83 4.69
65 66 3.352338 GAACAGGCGACGGACGGAT 62.352 63.158 0.00 0.00 42.83 4.18
66 67 1.996786 GAACAGGCGACGGACGGATA 61.997 60.000 0.00 0.00 42.83 2.59
68 69 3.214845 AGGCGACGGACGGATACC 61.215 66.667 1.66 0.00 42.83 2.73
69 70 4.276146 GGCGACGGACGGATACCC 62.276 72.222 1.66 0.00 42.83 3.69
88 89 2.586258 CGGAGGAGGACAACTACATG 57.414 55.000 0.00 0.00 29.75 3.21
89 90 1.471676 CGGAGGAGGACAACTACATGC 60.472 57.143 0.00 0.00 29.75 4.06
90 91 1.134371 GGAGGAGGACAACTACATGCC 60.134 57.143 0.00 0.00 29.75 4.40
91 92 0.912486 AGGAGGACAACTACATGCCC 59.088 55.000 0.00 0.00 29.75 5.36
92 93 0.107165 GGAGGACAACTACATGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
93 94 0.107165 GAGGACAACTACATGCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
108 109 1.455959 CCCCCTCCGAAGACGAGAT 60.456 63.158 0.00 0.00 42.66 2.75
109 110 1.043673 CCCCCTCCGAAGACGAGATT 61.044 60.000 0.00 0.00 42.66 2.40
111 112 1.609555 CCCCTCCGAAGACGAGATTAG 59.390 57.143 0.00 0.00 42.66 1.73
112 113 1.001158 CCCTCCGAAGACGAGATTAGC 60.001 57.143 0.00 0.00 42.66 3.09
114 115 1.950909 CTCCGAAGACGAGATTAGCCT 59.049 52.381 0.00 0.00 42.66 4.58
115 116 1.948145 TCCGAAGACGAGATTAGCCTC 59.052 52.381 0.00 0.00 42.66 4.70
134 135 2.973420 GGCGACGACTAAGGGATTG 58.027 57.895 0.00 0.00 0.00 2.67
135 136 1.152383 GGCGACGACTAAGGGATTGC 61.152 60.000 0.00 0.00 0.00 3.56
137 138 0.460311 CGACGACTAAGGGATTGCCT 59.540 55.000 0.00 0.00 0.00 4.75
138 139 1.679680 CGACGACTAAGGGATTGCCTA 59.320 52.381 0.00 0.00 0.00 3.93
139 140 2.543238 CGACGACTAAGGGATTGCCTAC 60.543 54.545 0.00 0.00 0.00 3.18
140 141 2.694109 GACGACTAAGGGATTGCCTACT 59.306 50.000 0.00 0.00 0.00 2.57
142 143 3.518303 ACGACTAAGGGATTGCCTACTTT 59.482 43.478 0.00 0.00 0.00 2.66
143 144 4.120589 CGACTAAGGGATTGCCTACTTTC 58.879 47.826 0.00 0.00 0.00 2.62
144 145 4.120589 GACTAAGGGATTGCCTACTTTCG 58.879 47.826 0.00 0.00 0.00 3.46
145 146 3.518303 ACTAAGGGATTGCCTACTTTCGT 59.482 43.478 0.00 0.00 0.00 3.85
147 148 2.188817 AGGGATTGCCTACTTTCGTCT 58.811 47.619 0.00 0.00 0.00 4.18
148 149 2.572104 AGGGATTGCCTACTTTCGTCTT 59.428 45.455 0.00 0.00 0.00 3.01
150 151 2.603560 GGATTGCCTACTTTCGTCTTCG 59.396 50.000 0.00 0.00 38.55 3.79
151 152 3.508762 GATTGCCTACTTTCGTCTTCGA 58.491 45.455 0.00 0.00 44.66 3.71
152 153 2.631418 TGCCTACTTTCGTCTTCGAG 57.369 50.000 0.00 0.00 46.81 4.04
153 154 1.201647 TGCCTACTTTCGTCTTCGAGG 59.798 52.381 0.00 0.00 46.81 4.63
155 156 2.478200 GCCTACTTTCGTCTTCGAGGAG 60.478 54.545 0.00 0.00 46.81 3.69
156 157 2.748532 CCTACTTTCGTCTTCGAGGAGT 59.251 50.000 0.00 0.00 46.81 3.85
157 158 3.190953 CCTACTTTCGTCTTCGAGGAGTT 59.809 47.826 0.00 0.00 46.81 3.01
158 159 3.729862 ACTTTCGTCTTCGAGGAGTTT 57.270 42.857 0.00 0.00 46.81 2.66
159 160 3.640592 ACTTTCGTCTTCGAGGAGTTTC 58.359 45.455 0.00 0.00 46.81 2.78
160 161 2.327081 TTCGTCTTCGAGGAGTTTCG 57.673 50.000 0.00 0.00 46.81 3.46
161 162 0.520404 TCGTCTTCGAGGAGTTTCGG 59.480 55.000 0.00 0.00 41.35 4.30
162 163 0.240411 CGTCTTCGAGGAGTTTCGGT 59.760 55.000 0.00 0.00 40.83 4.69
163 164 1.728502 CGTCTTCGAGGAGTTTCGGTC 60.729 57.143 0.00 0.00 40.83 4.79
164 165 1.540707 GTCTTCGAGGAGTTTCGGTCT 59.459 52.381 0.00 0.00 40.83 3.85
165 166 2.746362 GTCTTCGAGGAGTTTCGGTCTA 59.254 50.000 0.00 0.00 40.83 2.59
166 167 3.008330 TCTTCGAGGAGTTTCGGTCTAG 58.992 50.000 0.00 0.00 40.83 2.43
167 168 2.486472 TCGAGGAGTTTCGGTCTAGT 57.514 50.000 0.00 0.00 40.83 2.57
169 170 2.027377 TCGAGGAGTTTCGGTCTAGTCT 60.027 50.000 0.00 0.00 40.83 3.24
170 171 2.352342 CGAGGAGTTTCGGTCTAGTCTC 59.648 54.545 0.00 0.00 36.95 3.36
171 172 3.613030 GAGGAGTTTCGGTCTAGTCTCT 58.387 50.000 0.00 0.00 0.00 3.10
172 173 3.349022 AGGAGTTTCGGTCTAGTCTCTG 58.651 50.000 0.00 0.00 0.00 3.35
173 174 3.083293 GGAGTTTCGGTCTAGTCTCTGT 58.917 50.000 0.00 0.00 0.00 3.41
174 175 3.119779 GGAGTTTCGGTCTAGTCTCTGTG 60.120 52.174 0.00 0.00 0.00 3.66
175 176 3.488363 AGTTTCGGTCTAGTCTCTGTGT 58.512 45.455 0.00 0.00 0.00 3.72
176 177 3.502979 AGTTTCGGTCTAGTCTCTGTGTC 59.497 47.826 0.00 0.00 0.00 3.67
177 178 3.420300 TTCGGTCTAGTCTCTGTGTCT 57.580 47.619 0.00 0.00 0.00 3.41
179 180 2.568062 TCGGTCTAGTCTCTGTGTCTCT 59.432 50.000 0.00 0.00 0.00 3.10
180 181 3.768215 TCGGTCTAGTCTCTGTGTCTCTA 59.232 47.826 0.00 0.00 0.00 2.43
181 182 4.116961 CGGTCTAGTCTCTGTGTCTCTAG 58.883 52.174 0.00 0.00 0.00 2.43
182 183 3.875134 GGTCTAGTCTCTGTGTCTCTAGC 59.125 52.174 0.00 0.00 0.00 3.42
183 184 3.554324 GTCTAGTCTCTGTGTCTCTAGCG 59.446 52.174 0.00 0.00 0.00 4.26
184 185 2.772077 AGTCTCTGTGTCTCTAGCGA 57.228 50.000 0.00 0.00 0.00 4.93
185 186 3.275617 AGTCTCTGTGTCTCTAGCGAT 57.724 47.619 0.00 0.00 0.00 4.58
186 187 2.942376 AGTCTCTGTGTCTCTAGCGATG 59.058 50.000 0.00 0.00 0.00 3.84
565 566 2.143876 ATATTGGAGTTGTGGCCCAC 57.856 50.000 7.01 7.01 34.56 4.61
566 567 0.039035 TATTGGAGTTGTGGCCCACC 59.961 55.000 12.25 0.00 32.73 4.61
568 569 2.034221 GGAGTTGTGGCCCACCTC 59.966 66.667 12.25 11.32 36.63 3.85
570 571 2.450502 AGTTGTGGCCCACCTCCT 60.451 61.111 12.25 1.06 36.63 3.69
571 572 1.151899 AGTTGTGGCCCACCTCCTA 60.152 57.895 12.25 0.00 36.63 2.94
572 573 1.201429 AGTTGTGGCCCACCTCCTAG 61.201 60.000 12.25 0.00 36.63 3.02
577 578 0.909610 TGGCCCACCTCCTAGTCTTG 60.910 60.000 0.00 0.00 36.63 3.02
579 580 1.621622 GGCCCACCTCCTAGTCTTGTA 60.622 57.143 0.00 0.00 0.00 2.41
580 581 2.399580 GCCCACCTCCTAGTCTTGTAT 58.600 52.381 0.00 0.00 0.00 2.29
581 582 3.573695 GCCCACCTCCTAGTCTTGTATA 58.426 50.000 0.00 0.00 0.00 1.47
582 583 3.965347 GCCCACCTCCTAGTCTTGTATAA 59.035 47.826 0.00 0.00 0.00 0.98
583 584 4.593634 GCCCACCTCCTAGTCTTGTATAAT 59.406 45.833 0.00 0.00 0.00 1.28
584 585 5.071923 GCCCACCTCCTAGTCTTGTATAATT 59.928 44.000 0.00 0.00 0.00 1.40
585 586 6.525629 CCCACCTCCTAGTCTTGTATAATTG 58.474 44.000 0.00 0.00 0.00 2.32
586 587 6.326583 CCCACCTCCTAGTCTTGTATAATTGA 59.673 42.308 0.00 0.00 0.00 2.57
587 588 7.437748 CCACCTCCTAGTCTTGTATAATTGAG 58.562 42.308 0.00 0.00 0.00 3.02
588 589 7.437748 CACCTCCTAGTCTTGTATAATTGAGG 58.562 42.308 0.00 0.00 41.08 3.86
589 590 7.133483 ACCTCCTAGTCTTGTATAATTGAGGT 58.867 38.462 0.00 0.00 42.91 3.85
590 591 8.287350 ACCTCCTAGTCTTGTATAATTGAGGTA 58.713 37.037 0.00 0.00 45.12 3.08
591 592 8.798402 CCTCCTAGTCTTGTATAATTGAGGTAG 58.202 40.741 0.00 0.00 32.82 3.18
592 593 9.575868 CTCCTAGTCTTGTATAATTGAGGTAGA 57.424 37.037 0.00 0.00 0.00 2.59
593 594 9.575868 TCCTAGTCTTGTATAATTGAGGTAGAG 57.424 37.037 0.00 0.00 0.00 2.43
595 596 7.056844 AGTCTTGTATAATTGAGGTAGAGGC 57.943 40.000 0.00 0.00 0.00 4.70
596 597 6.042208 AGTCTTGTATAATTGAGGTAGAGGCC 59.958 42.308 0.00 0.00 0.00 5.19
597 598 6.042208 GTCTTGTATAATTGAGGTAGAGGCCT 59.958 42.308 3.86 3.86 42.53 5.19
598 599 6.615726 TCTTGTATAATTGAGGTAGAGGCCTT 59.384 38.462 6.77 0.00 39.34 4.35
600 601 4.984146 ATAATTGAGGTAGAGGCCTTCC 57.016 45.455 6.77 10.69 39.34 3.46
601 602 1.512735 ATTGAGGTAGAGGCCTTCCC 58.487 55.000 6.77 7.52 39.34 3.97
603 604 0.417841 TGAGGTAGAGGCCTTCCCTT 59.582 55.000 6.77 0.00 46.60 3.95
604 605 0.833949 GAGGTAGAGGCCTTCCCTTG 59.166 60.000 6.77 0.00 46.60 3.61
605 606 0.119358 AGGTAGAGGCCTTCCCTTGT 59.881 55.000 6.77 0.00 46.60 3.16
606 607 1.365028 AGGTAGAGGCCTTCCCTTGTA 59.635 52.381 6.77 0.00 46.60 2.41
607 608 2.193993 GGTAGAGGCCTTCCCTTGTAA 58.806 52.381 6.77 0.00 46.60 2.41
608 609 2.778270 GGTAGAGGCCTTCCCTTGTAAT 59.222 50.000 6.77 0.00 46.60 1.89
609 610 3.202373 GGTAGAGGCCTTCCCTTGTAATT 59.798 47.826 6.77 0.00 46.60 1.40
610 611 4.411212 GGTAGAGGCCTTCCCTTGTAATTA 59.589 45.833 6.77 0.00 46.60 1.40
611 612 5.073280 GGTAGAGGCCTTCCCTTGTAATTAT 59.927 44.000 6.77 0.00 46.60 1.28
613 614 7.037514 GGTAGAGGCCTTCCCTTGTAATTATAT 60.038 40.741 6.77 0.00 46.60 0.86
614 615 9.043548 GTAGAGGCCTTCCCTTGTAATTATATA 57.956 37.037 6.77 0.00 46.60 0.86
615 616 8.701643 AGAGGCCTTCCCTTGTAATTATATAT 57.298 34.615 6.77 0.00 46.60 0.86
616 617 9.799223 AGAGGCCTTCCCTTGTAATTATATATA 57.201 33.333 6.77 0.00 46.60 0.86
618 619 8.483758 AGGCCTTCCCTTGTAATTATATATACG 58.516 37.037 0.00 0.00 43.06 3.06
620 621 9.095065 GCCTTCCCTTGTAATTATATATACGTG 57.905 37.037 0.00 0.00 0.00 4.49
621 622 9.095065 CCTTCCCTTGTAATTATATATACGTGC 57.905 37.037 0.00 0.00 0.00 5.34
622 623 9.647797 CTTCCCTTGTAATTATATATACGTGCA 57.352 33.333 0.00 0.00 0.00 4.57
623 624 8.991243 TCCCTTGTAATTATATATACGTGCAC 57.009 34.615 6.82 6.82 0.00 4.57
624 625 8.036575 TCCCTTGTAATTATATATACGTGCACC 58.963 37.037 12.15 0.00 0.00 5.01
625 626 7.820386 CCCTTGTAATTATATATACGTGCACCA 59.180 37.037 12.15 0.00 0.00 4.17
626 627 8.869897 CCTTGTAATTATATATACGTGCACCAG 58.130 37.037 12.15 0.00 0.00 4.00
637 638 2.283101 GCACCAGCACCCCATCAA 60.283 61.111 0.00 0.00 41.58 2.57
638 639 1.683365 GCACCAGCACCCCATCAAT 60.683 57.895 0.00 0.00 41.58 2.57
641 642 2.488891 GCACCAGCACCCCATCAATATA 60.489 50.000 0.00 0.00 41.58 0.86
644 645 2.813754 CCAGCACCCCATCAATATAACG 59.186 50.000 0.00 0.00 0.00 3.18
645 646 3.495983 CCAGCACCCCATCAATATAACGA 60.496 47.826 0.00 0.00 0.00 3.85
647 648 4.761739 CAGCACCCCATCAATATAACGATT 59.238 41.667 0.00 0.00 0.00 3.34
648 649 5.937540 CAGCACCCCATCAATATAACGATTA 59.062 40.000 0.00 0.00 0.00 1.75
649 650 6.599244 CAGCACCCCATCAATATAACGATTAT 59.401 38.462 0.00 0.00 0.00 1.28
651 652 7.121168 AGCACCCCATCAATATAACGATTATTG 59.879 37.037 0.00 0.00 33.73 1.90
652 653 7.094377 GCACCCCATCAATATAACGATTATTGT 60.094 37.037 12.79 0.00 34.03 2.71
667 668 8.460831 ACGATTATTGTATTGCAAACTTTTCC 57.539 30.769 1.71 0.00 40.91 3.13
668 669 7.272515 ACGATTATTGTATTGCAAACTTTTCCG 59.727 33.333 1.71 3.01 40.91 4.30
669 670 7.272515 CGATTATTGTATTGCAAACTTTTCCGT 59.727 33.333 1.71 0.00 40.91 4.69
670 671 7.861176 TTATTGTATTGCAAACTTTTCCGTC 57.139 32.000 1.71 0.00 40.91 4.79
671 672 5.508200 TTGTATTGCAAACTTTTCCGTCT 57.492 34.783 1.71 0.00 33.53 4.18
672 673 6.621316 TTGTATTGCAAACTTTTCCGTCTA 57.379 33.333 1.71 0.00 33.53 2.59
673 674 5.992729 TGTATTGCAAACTTTTCCGTCTAC 58.007 37.500 1.71 0.00 0.00 2.59
674 675 5.527951 TGTATTGCAAACTTTTCCGTCTACA 59.472 36.000 1.71 0.00 0.00 2.74
676 677 4.742438 TGCAAACTTTTCCGTCTACATC 57.258 40.909 0.00 0.00 0.00 3.06
677 678 4.130857 TGCAAACTTTTCCGTCTACATCA 58.869 39.130 0.00 0.00 0.00 3.07
678 679 4.576873 TGCAAACTTTTCCGTCTACATCAA 59.423 37.500 0.00 0.00 0.00 2.57
679 680 4.909880 GCAAACTTTTCCGTCTACATCAAC 59.090 41.667 0.00 0.00 0.00 3.18
682 683 6.937436 AACTTTTCCGTCTACATCAACTTT 57.063 33.333 0.00 0.00 0.00 2.66
684 685 8.441312 AACTTTTCCGTCTACATCAACTTTAA 57.559 30.769 0.00 0.00 0.00 1.52
685 686 8.084590 ACTTTTCCGTCTACATCAACTTTAAG 57.915 34.615 0.00 0.00 0.00 1.85
686 687 6.476243 TTTCCGTCTACATCAACTTTAAGC 57.524 37.500 0.00 0.00 0.00 3.09
687 688 4.171005 TCCGTCTACATCAACTTTAAGCG 58.829 43.478 0.00 0.00 0.00 4.68
688 689 3.241995 CCGTCTACATCAACTTTAAGCGC 60.242 47.826 0.00 0.00 0.00 5.92
689 690 3.241995 CGTCTACATCAACTTTAAGCGCC 60.242 47.826 2.29 0.00 0.00 6.53
690 691 3.682858 GTCTACATCAACTTTAAGCGCCA 59.317 43.478 2.29 0.00 0.00 5.69
691 692 2.989422 ACATCAACTTTAAGCGCCAC 57.011 45.000 2.29 0.00 0.00 5.01
692 693 2.226330 ACATCAACTTTAAGCGCCACA 58.774 42.857 2.29 0.00 0.00 4.17
694 695 3.255642 ACATCAACTTTAAGCGCCACATT 59.744 39.130 2.29 0.00 0.00 2.71
695 696 4.457603 ACATCAACTTTAAGCGCCACATTA 59.542 37.500 2.29 0.00 0.00 1.90
696 697 4.413495 TCAACTTTAAGCGCCACATTAC 57.587 40.909 2.29 0.00 0.00 1.89
699 700 3.007635 ACTTTAAGCGCCACATTACCTC 58.992 45.455 2.29 0.00 0.00 3.85
700 701 3.270877 CTTTAAGCGCCACATTACCTCT 58.729 45.455 2.29 0.00 0.00 3.69
701 702 3.343941 TTAAGCGCCACATTACCTCTT 57.656 42.857 2.29 0.00 0.00 2.85
703 704 2.200373 AGCGCCACATTACCTCTTTT 57.800 45.000 2.29 0.00 0.00 2.27
704 705 2.084546 AGCGCCACATTACCTCTTTTC 58.915 47.619 2.29 0.00 0.00 2.29
705 706 1.810151 GCGCCACATTACCTCTTTTCA 59.190 47.619 0.00 0.00 0.00 2.69
706 707 2.423538 GCGCCACATTACCTCTTTTCAT 59.576 45.455 0.00 0.00 0.00 2.57
708 709 3.440173 CGCCACATTACCTCTTTTCATGT 59.560 43.478 0.00 0.00 0.00 3.21
709 710 4.634004 CGCCACATTACCTCTTTTCATGTA 59.366 41.667 0.00 0.00 0.00 2.29
711 712 5.648092 GCCACATTACCTCTTTTCATGTACT 59.352 40.000 0.00 0.00 0.00 2.73
713 714 6.316390 CCACATTACCTCTTTTCATGTACTCC 59.684 42.308 0.00 0.00 0.00 3.85
714 715 6.316390 CACATTACCTCTTTTCATGTACTCCC 59.684 42.308 0.00 0.00 0.00 4.30
715 716 6.215636 ACATTACCTCTTTTCATGTACTCCCT 59.784 38.462 0.00 0.00 0.00 4.20
716 717 4.828072 ACCTCTTTTCATGTACTCCCTC 57.172 45.455 0.00 0.00 0.00 4.30
717 718 4.430441 ACCTCTTTTCATGTACTCCCTCT 58.570 43.478 0.00 0.00 0.00 3.69
718 719 5.590818 ACCTCTTTTCATGTACTCCCTCTA 58.409 41.667 0.00 0.00 0.00 2.43
719 720 6.206042 ACCTCTTTTCATGTACTCCCTCTAT 58.794 40.000 0.00 0.00 0.00 1.98
720 721 6.325286 ACCTCTTTTCATGTACTCCCTCTATC 59.675 42.308 0.00 0.00 0.00 2.08
721 722 6.553100 CCTCTTTTCATGTACTCCCTCTATCT 59.447 42.308 0.00 0.00 0.00 1.98
722 723 7.255801 CCTCTTTTCATGTACTCCCTCTATCTC 60.256 44.444 0.00 0.00 0.00 2.75
725 726 9.083422 CTTTTCATGTACTCCCTCTATCTCATA 57.917 37.037 0.00 0.00 0.00 2.15
726 727 9.434275 TTTTCATGTACTCCCTCTATCTCATAA 57.566 33.333 0.00 0.00 0.00 1.90
727 728 9.607333 TTTCATGTACTCCCTCTATCTCATAAT 57.393 33.333 0.00 0.00 0.00 1.28
756 757 9.816354 AACAACATTATTCAAACTGTTTTAGCT 57.184 25.926 2.41 0.00 29.74 3.32
757 758 9.816354 ACAACATTATTCAAACTGTTTTAGCTT 57.184 25.926 2.41 0.00 29.74 3.74
793 794 9.953565 TTTTATATTATTATTGGGACGGAGAGG 57.046 33.333 0.00 0.00 0.00 3.69
794 795 3.764237 TTATTATTGGGACGGAGAGGC 57.236 47.619 0.00 0.00 0.00 4.70
801 802 4.477413 GACGGAGAGGCCTCGATA 57.523 61.111 26.95 0.00 40.33 2.92
802 803 1.950758 GACGGAGAGGCCTCGATAC 59.049 63.158 26.95 18.14 40.33 2.24
804 805 0.763652 ACGGAGAGGCCTCGATACTA 59.236 55.000 26.95 0.00 40.33 1.82
807 808 1.158434 GAGAGGCCTCGATACTACGG 58.842 60.000 26.95 0.00 34.09 4.02
808 809 0.890090 AGAGGCCTCGATACTACGGC 60.890 60.000 26.95 2.61 41.75 5.68
810 811 2.649614 GCCTCGATACTACGGCCC 59.350 66.667 0.00 0.00 36.56 5.80
811 812 2.198287 GCCTCGATACTACGGCCCA 61.198 63.158 0.00 0.00 36.56 5.36
812 813 1.741327 GCCTCGATACTACGGCCCAA 61.741 60.000 0.00 0.00 36.56 4.12
813 814 0.966920 CCTCGATACTACGGCCCAAT 59.033 55.000 0.00 0.00 0.00 3.16
815 816 2.094854 CCTCGATACTACGGCCCAATAC 60.095 54.545 0.00 0.00 0.00 1.89
816 817 1.888512 TCGATACTACGGCCCAATACC 59.111 52.381 0.00 0.00 0.00 2.73
826 827 1.692173 GCCCAATACCGGCCTGACTA 61.692 60.000 0.00 0.00 40.78 2.59
829 830 1.474498 CCAATACCGGCCTGACTAACC 60.474 57.143 0.00 0.00 0.00 2.85
833 834 0.252375 ACCGGCCTGACTAACCCTAA 60.252 55.000 0.00 0.00 0.00 2.69
834 835 0.906775 CCGGCCTGACTAACCCTAAA 59.093 55.000 0.00 0.00 0.00 1.85
835 836 1.279846 CCGGCCTGACTAACCCTAAAA 59.720 52.381 0.00 0.00 0.00 1.52
855 856 2.124277 AAAAATACCGGCCTGACTCC 57.876 50.000 0.00 0.00 0.00 3.85
856 857 0.107848 AAAATACCGGCCTGACTCCG 60.108 55.000 0.00 0.00 46.05 4.63
857 858 1.262640 AAATACCGGCCTGACTCCGT 61.263 55.000 0.00 0.00 45.09 4.69
859 860 0.822532 ATACCGGCCTGACTCCGTAG 60.823 60.000 0.00 0.00 45.09 3.51
860 861 4.208686 CCGGCCTGACTCCGTAGC 62.209 72.222 0.00 0.00 45.09 3.58
862 863 3.851128 GGCCTGACTCCGTAGCCC 61.851 72.222 0.00 0.00 37.66 5.19
864 865 1.455217 GCCTGACTCCGTAGCCCTA 60.455 63.158 0.00 0.00 0.00 3.53
865 866 1.736365 GCCTGACTCCGTAGCCCTAC 61.736 65.000 0.00 0.00 0.00 3.18
866 867 1.108132 CCTGACTCCGTAGCCCTACC 61.108 65.000 0.18 0.00 32.61 3.18
868 869 1.452833 GACTCCGTAGCCCTACCGT 60.453 63.158 0.18 0.00 32.61 4.83
869 870 1.443322 GACTCCGTAGCCCTACCGTC 61.443 65.000 0.18 1.98 32.61 4.79
870 871 1.452651 CTCCGTAGCCCTACCGTCA 60.453 63.158 0.18 0.00 32.61 4.35
871 872 1.722636 CTCCGTAGCCCTACCGTCAC 61.723 65.000 0.18 0.00 32.61 3.67
872 873 2.406401 CGTAGCCCTACCGTCACG 59.594 66.667 0.00 0.00 32.61 4.35
873 874 2.108514 CGTAGCCCTACCGTCACGA 61.109 63.158 0.00 0.00 32.61 4.35
874 875 1.647545 CGTAGCCCTACCGTCACGAA 61.648 60.000 0.00 0.00 32.61 3.85
875 876 0.527565 GTAGCCCTACCGTCACGAAA 59.472 55.000 0.00 0.00 0.00 3.46
876 877 1.067635 GTAGCCCTACCGTCACGAAAA 60.068 52.381 0.00 0.00 0.00 2.29
877 878 0.037605 AGCCCTACCGTCACGAAAAG 60.038 55.000 0.00 0.00 0.00 2.27
878 879 1.632948 GCCCTACCGTCACGAAAAGC 61.633 60.000 0.00 0.00 0.00 3.51
879 880 1.017701 CCCTACCGTCACGAAAAGCC 61.018 60.000 0.00 0.00 0.00 4.35
880 881 0.320073 CCTACCGTCACGAAAAGCCA 60.320 55.000 0.00 0.00 0.00 4.75
881 882 0.788391 CTACCGTCACGAAAAGCCAC 59.212 55.000 0.00 0.00 0.00 5.01
882 883 0.600782 TACCGTCACGAAAAGCCACC 60.601 55.000 0.00 0.00 0.00 4.61
884 885 1.234615 CCGTCACGAAAAGCCACCAT 61.235 55.000 0.00 0.00 0.00 3.55
885 886 0.165944 CGTCACGAAAAGCCACCATC 59.834 55.000 0.00 0.00 0.00 3.51
887 888 1.464997 GTCACGAAAAGCCACCATCTC 59.535 52.381 0.00 0.00 0.00 2.75
888 889 0.443869 CACGAAAAGCCACCATCTCG 59.556 55.000 0.00 0.00 0.00 4.04
889 890 0.034896 ACGAAAAGCCACCATCTCGT 59.965 50.000 0.00 0.00 34.89 4.18
890 891 0.721718 CGAAAAGCCACCATCTCGTC 59.278 55.000 0.00 0.00 0.00 4.20
892 893 2.003301 GAAAAGCCACCATCTCGTCTC 58.997 52.381 0.00 0.00 0.00 3.36
894 895 0.820871 AAGCCACCATCTCGTCTCTC 59.179 55.000 0.00 0.00 0.00 3.20
895 896 1.064946 GCCACCATCTCGTCTCTCG 59.935 63.158 0.00 0.00 41.41 4.04
897 898 1.729470 CCACCATCTCGTCTCTCGGG 61.729 65.000 0.00 0.00 42.07 5.14
899 900 0.748729 ACCATCTCGTCTCTCGGGTC 60.749 60.000 0.00 0.00 41.36 4.46
900 901 0.464735 CCATCTCGTCTCTCGGGTCT 60.465 60.000 0.00 0.00 41.36 3.85
901 902 0.660488 CATCTCGTCTCTCGGGTCTG 59.340 60.000 0.00 0.00 41.36 3.51
903 904 2.045242 TCGTCTCTCGGGTCTGGG 60.045 66.667 0.00 0.00 40.32 4.45
904 905 3.827898 CGTCTCTCGGGTCTGGGC 61.828 72.222 0.00 0.00 35.71 5.36
905 906 3.462678 GTCTCTCGGGTCTGGGCC 61.463 72.222 0.00 0.00 0.00 5.80
907 908 2.765807 CTCTCGGGTCTGGGCCAT 60.766 66.667 6.72 0.00 0.00 4.40
909 910 2.190578 CTCGGGTCTGGGCCATTC 59.809 66.667 6.72 2.72 0.00 2.67
910 911 3.406595 CTCGGGTCTGGGCCATTCC 62.407 68.421 6.72 12.72 0.00 3.01
919 920 4.805132 GGCCATTCCCCCATCAAA 57.195 55.556 0.00 0.00 0.00 2.69
920 921 2.211375 GGCCATTCCCCCATCAAAC 58.789 57.895 0.00 0.00 0.00 2.93
921 922 1.337384 GGCCATTCCCCCATCAAACC 61.337 60.000 0.00 0.00 0.00 3.27
923 924 0.033601 CCATTCCCCCATCAAACCGA 60.034 55.000 0.00 0.00 0.00 4.69
926 927 2.137810 TTCCCCCATCAAACCGAATC 57.862 50.000 0.00 0.00 0.00 2.52
927 928 0.257616 TCCCCCATCAAACCGAATCC 59.742 55.000 0.00 0.00 0.00 3.01
928 929 0.755327 CCCCCATCAAACCGAATCCC 60.755 60.000 0.00 0.00 0.00 3.85
929 930 0.755327 CCCCATCAAACCGAATCCCC 60.755 60.000 0.00 0.00 0.00 4.81
931 932 1.102978 CCATCAAACCGAATCCCCAC 58.897 55.000 0.00 0.00 0.00 4.61
932 933 0.732571 CATCAAACCGAATCCCCACG 59.267 55.000 0.00 0.00 0.00 4.94
933 934 0.326927 ATCAAACCGAATCCCCACGT 59.673 50.000 0.00 0.00 0.00 4.49
934 935 0.320946 TCAAACCGAATCCCCACGTC 60.321 55.000 0.00 0.00 0.00 4.34
935 936 1.002990 AAACCGAATCCCCACGTCC 60.003 57.895 0.00 0.00 0.00 4.79
936 937 1.486145 AAACCGAATCCCCACGTCCT 61.486 55.000 0.00 0.00 0.00 3.85
937 938 1.896122 AACCGAATCCCCACGTCCTC 61.896 60.000 0.00 0.00 0.00 3.71
938 939 2.058595 CCGAATCCCCACGTCCTCT 61.059 63.158 0.00 0.00 0.00 3.69
939 940 1.141881 CGAATCCCCACGTCCTCTG 59.858 63.158 0.00 0.00 0.00 3.35
940 941 1.320344 CGAATCCCCACGTCCTCTGA 61.320 60.000 0.00 0.00 0.00 3.27
941 942 0.175989 GAATCCCCACGTCCTCTGAC 59.824 60.000 0.00 0.00 38.18 3.51
942 943 1.265454 AATCCCCACGTCCTCTGACC 61.265 60.000 0.00 0.00 38.32 4.02
944 945 2.352032 CCCCACGTCCTCTGACCTC 61.352 68.421 0.00 0.00 38.32 3.85
945 946 2.701780 CCCACGTCCTCTGACCTCG 61.702 68.421 0.00 0.00 38.32 4.63
947 948 1.524863 CCACGTCCTCTGACCTCGTT 61.525 60.000 0.00 0.00 38.32 3.85
948 949 0.109689 CACGTCCTCTGACCTCGTTC 60.110 60.000 0.00 0.00 38.32 3.95
950 951 1.891616 GTCCTCTGACCTCGTTCCC 59.108 63.158 0.00 0.00 35.34 3.97
951 952 1.305046 TCCTCTGACCTCGTTCCCC 60.305 63.158 0.00 0.00 0.00 4.81
952 953 1.609501 CCTCTGACCTCGTTCCCCA 60.610 63.158 0.00 0.00 0.00 4.96
953 954 1.592223 CTCTGACCTCGTTCCCCAC 59.408 63.158 0.00 0.00 0.00 4.61
954 955 1.889530 CTCTGACCTCGTTCCCCACC 61.890 65.000 0.00 0.00 0.00 4.61
955 956 2.926242 TGACCTCGTTCCCCACCC 60.926 66.667 0.00 0.00 0.00 4.61
957 958 4.626402 ACCTCGTTCCCCACCCGA 62.626 66.667 0.00 0.00 0.00 5.14
959 960 2.666098 CCTCGTTCCCCACCCGAAT 61.666 63.158 0.00 0.00 0.00 3.34
960 961 1.153429 CTCGTTCCCCACCCGAATC 60.153 63.158 0.00 0.00 0.00 2.52
961 962 2.124860 CGTTCCCCACCCGAATCC 60.125 66.667 0.00 0.00 0.00 3.01
962 963 2.124860 GTTCCCCACCCGAATCCG 60.125 66.667 0.00 0.00 0.00 4.18
963 964 4.104183 TTCCCCACCCGAATCCGC 62.104 66.667 0.00 0.00 0.00 5.54
996 997 3.175240 CGCCAGAACTCTCGCGTG 61.175 66.667 5.77 3.13 45.97 5.34
997 998 2.811317 GCCAGAACTCTCGCGTGG 60.811 66.667 5.77 5.53 0.00 4.94
998 999 2.811317 CCAGAACTCTCGCGTGGC 60.811 66.667 5.77 0.00 0.00 5.01
1023 1024 6.662865 ATGATATCATCGGAGAAACTCTGT 57.337 37.500 12.62 0.00 43.58 3.41
1024 1025 6.078202 TGATATCATCGGAGAAACTCTGTC 57.922 41.667 0.00 0.00 43.58 3.51
1026 1027 6.322456 TGATATCATCGGAGAAACTCTGTCTT 59.678 38.462 0.00 0.00 43.58 3.01
1027 1028 4.179926 TCATCGGAGAAACTCTGTCTTG 57.820 45.455 7.35 5.14 43.58 3.02
1028 1029 3.056536 TCATCGGAGAAACTCTGTCTTGG 60.057 47.826 7.35 0.00 43.58 3.61
1032 1033 2.037772 GGAGAAACTCTGTCTTGGAGCA 59.962 50.000 0.00 0.00 34.46 4.26
1033 1034 3.324993 GAGAAACTCTGTCTTGGAGCAG 58.675 50.000 0.00 0.00 34.46 4.24
1034 1035 2.968574 AGAAACTCTGTCTTGGAGCAGA 59.031 45.455 0.00 0.00 39.17 4.26
1036 1037 0.600557 ACTCTGTCTTGGAGCAGACG 59.399 55.000 0.00 0.00 45.53 4.18
1037 1038 4.586618 CTGTCTTGGAGCAGACGG 57.413 61.111 0.00 0.00 45.53 4.79
1038 1039 1.079543 CTGTCTTGGAGCAGACGGG 60.080 63.158 3.36 0.00 45.53 5.28
1039 1040 1.533033 TGTCTTGGAGCAGACGGGA 60.533 57.895 0.00 0.00 45.53 5.14
1040 1041 1.118965 TGTCTTGGAGCAGACGGGAA 61.119 55.000 0.00 0.00 45.53 3.97
1058 1059 3.792736 CCGCCTTTCCCATCCCGA 61.793 66.667 0.00 0.00 0.00 5.14
1061 1062 2.513897 CCTTTCCCATCCCGACGC 60.514 66.667 0.00 0.00 0.00 5.19
1104 1106 2.663196 GACCTGTCCGACTTGGGG 59.337 66.667 13.23 7.23 38.76 4.96
1163 1168 1.645710 ACGGAGTCCCTTGTCAAGAT 58.354 50.000 14.42 0.00 29.74 2.40
1172 1177 1.278238 CTTGTCAAGATCGGCGGTAC 58.722 55.000 7.21 0.00 0.00 3.34
1189 1218 4.184079 GGTACGTGTATCCTGTGTTCTT 57.816 45.455 0.00 0.00 0.00 2.52
1191 1220 4.387862 GGTACGTGTATCCTGTGTTCTTTG 59.612 45.833 0.00 0.00 0.00 2.77
1201 1230 5.865085 TCCTGTGTTCTTTGTGCTACTTAT 58.135 37.500 0.00 0.00 0.00 1.73
1203 1232 7.446769 TCCTGTGTTCTTTGTGCTACTTATTA 58.553 34.615 0.00 0.00 0.00 0.98
1207 1236 9.502091 TGTGTTCTTTGTGCTACTTATTAATCT 57.498 29.630 0.00 0.00 0.00 2.40
1243 1272 7.220030 ACTAGCCAAGATCACATACCAATTAG 58.780 38.462 0.00 0.00 0.00 1.73
1416 3399 1.409064 TCGTCCCAGATTCCGATGAAG 59.591 52.381 0.00 0.00 33.05 3.02
1584 4635 4.730657 CAGCTAGCAAAGAAAATGGACAG 58.269 43.478 18.83 0.00 0.00 3.51
1932 5130 5.689383 TTTCTCTGCGTTTATCAAGCTTT 57.311 34.783 0.00 0.00 0.00 3.51
2066 5264 3.350219 TGACCAGGTAATCAAGGCTTC 57.650 47.619 0.00 0.00 0.00 3.86
2071 5269 3.119352 CCAGGTAATCAAGGCTTCTTTGC 60.119 47.826 0.00 0.00 0.00 3.68
2236 5785 0.502275 GTTGCGCCACATGAAAAACG 59.498 50.000 4.18 0.00 0.00 3.60
2315 5864 4.489771 AGCTACATGCACCGGGCC 62.490 66.667 6.32 0.00 45.94 5.80
2432 5986 7.445121 GGACTGGAATCCTTCAAAAATTTCTT 58.555 34.615 0.00 0.00 35.68 2.52
2851 6571 7.911130 ATGTGAATCTCAGGAATAAGAGAGA 57.089 36.000 0.00 0.00 43.48 3.10
2895 6615 5.815581 ACCTGTGAGTATATTTCAAAGCCA 58.184 37.500 3.10 0.00 30.06 4.75
3092 6831 2.335316 TTGCCCGTTGAGTTGTAACT 57.665 45.000 0.00 0.00 43.16 2.24
3124 6863 3.085952 TGCAGGATCCTTTTACCTTGG 57.914 47.619 13.00 0.00 31.06 3.61
3368 7118 1.064685 TGAGGCAGTGATCGAGGTCTA 60.065 52.381 0.00 0.00 0.00 2.59
3384 7134 2.483889 GGTCTATGCAGAGGTTAGCCAC 60.484 54.545 8.78 0.00 37.19 5.01
3457 7207 2.737252 GTGCTCTTCGACGGAAAATTCT 59.263 45.455 0.00 0.00 0.00 2.40
3465 7215 2.614481 CGACGGAAAATTCTCTGGGGAA 60.614 50.000 0.00 0.00 0.00 3.97
3469 7219 3.367395 CGGAAAATTCTCTGGGGAAAAGC 60.367 47.826 0.00 0.00 0.00 3.51
3532 7282 3.544698 AGGTTCAGTTAGAGGTGGAGA 57.455 47.619 0.00 0.00 0.00 3.71
3551 7301 5.012893 GGAGAAATCAGTTTTCCAGTGGAT 58.987 41.667 14.00 0.00 44.06 3.41
3552 7302 5.124617 GGAGAAATCAGTTTTCCAGTGGATC 59.875 44.000 14.00 4.01 44.06 3.36
3584 7334 0.912486 AATGCCGGACCTCTTAGCTT 59.088 50.000 5.05 0.00 0.00 3.74
3627 7377 0.114954 ATGGCCAGTTTGATGTGGGT 59.885 50.000 13.05 0.00 34.06 4.51
3829 7581 4.127171 TGTTGAAACTGTAGCAGAAGTCC 58.873 43.478 2.91 0.00 35.18 3.85
3853 7605 0.823460 TATGCATGACTCTGGCGTGA 59.177 50.000 10.16 0.00 0.00 4.35
3936 7688 1.620323 GCCAGGAGCCTGAAAATGTTT 59.380 47.619 17.88 0.00 46.30 2.83
3945 7697 8.502738 AGGAGCCTGAAAATGTTTTATATCCTA 58.497 33.333 0.00 0.00 0.00 2.94
3946 7698 8.568794 GGAGCCTGAAAATGTTTTATATCCTAC 58.431 37.037 0.00 0.00 0.00 3.18
3947 7699 9.343539 GAGCCTGAAAATGTTTTATATCCTACT 57.656 33.333 0.00 0.00 0.00 2.57
3948 7700 9.125026 AGCCTGAAAATGTTTTATATCCTACTG 57.875 33.333 0.00 0.00 0.00 2.74
3949 7701 8.352942 GCCTGAAAATGTTTTATATCCTACTGG 58.647 37.037 0.00 0.00 0.00 4.00
3950 7702 9.408648 CCTGAAAATGTTTTATATCCTACTGGT 57.591 33.333 0.00 0.00 34.23 4.00
3958 7710 9.116067 TGTTTTATATCCTACTGGTACAAATGC 57.884 33.333 0.00 0.00 38.70 3.56
3959 7711 8.565416 GTTTTATATCCTACTGGTACAAATGCC 58.435 37.037 0.00 0.00 38.70 4.40
3960 7712 3.577805 ATCCTACTGGTACAAATGCCC 57.422 47.619 0.00 0.00 38.70 5.36
3961 7713 1.208535 TCCTACTGGTACAAATGCCCG 59.791 52.381 0.00 0.00 38.70 6.13
3963 7715 2.006888 CTACTGGTACAAATGCCCGTG 58.993 52.381 0.00 0.00 38.70 4.94
3964 7716 1.241315 ACTGGTACAAATGCCCGTGC 61.241 55.000 0.00 0.00 38.70 5.34
3965 7717 2.252127 CTGGTACAAATGCCCGTGCG 62.252 60.000 0.00 0.00 38.19 5.34
3968 7720 0.727793 GTACAAATGCCCGTGCGTTG 60.728 55.000 0.00 1.29 45.88 4.10
3970 7722 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
3986 7738 1.515487 GCACCGGGCAATAAAAGGG 59.485 57.895 6.32 0.00 43.97 3.95
3987 7739 1.955495 GCACCGGGCAATAAAAGGGG 61.955 60.000 6.32 0.00 43.97 4.79
3988 7740 1.684391 ACCGGGCAATAAAAGGGGC 60.684 57.895 6.32 0.00 0.00 5.80
3989 7741 1.684049 CCGGGCAATAAAAGGGGCA 60.684 57.895 0.00 0.00 0.00 5.36
3990 7742 1.515487 CGGGCAATAAAAGGGGCAC 59.485 57.895 0.00 0.00 0.00 5.01
3993 7745 0.108186 GGCAATAAAAGGGGCACAGC 60.108 55.000 0.00 0.00 0.00 4.40
4003 7755 2.882876 GGCACAGCCTGCTTCATG 59.117 61.111 0.00 0.00 46.69 3.07
4004 7756 1.975407 GGCACAGCCTGCTTCATGT 60.975 57.895 0.00 0.00 46.69 3.21
4005 7757 1.211969 GCACAGCCTGCTTCATGTG 59.788 57.895 0.00 5.22 43.33 3.21
4006 7758 1.211969 CACAGCCTGCTTCATGTGC 59.788 57.895 0.00 6.53 36.91 4.57
4007 7759 1.074423 ACAGCCTGCTTCATGTGCT 59.926 52.632 12.86 0.00 0.00 4.40
4008 7760 0.325933 ACAGCCTGCTTCATGTGCTA 59.674 50.000 12.86 2.05 0.00 3.49
4009 7761 1.064906 ACAGCCTGCTTCATGTGCTAT 60.065 47.619 12.86 0.00 0.00 2.97
4010 7762 2.022195 CAGCCTGCTTCATGTGCTATT 58.978 47.619 12.86 0.00 0.00 1.73
4012 7764 3.094572 AGCCTGCTTCATGTGCTATTTT 58.905 40.909 12.86 0.00 0.00 1.82
4013 7765 3.119245 AGCCTGCTTCATGTGCTATTTTG 60.119 43.478 12.86 0.00 0.00 2.44
4014 7766 3.184541 CCTGCTTCATGTGCTATTTTGC 58.815 45.455 12.86 0.00 0.00 3.68
4015 7767 3.367600 CCTGCTTCATGTGCTATTTTGCA 60.368 43.478 12.86 0.00 41.05 4.08
4016 7768 4.430007 CTGCTTCATGTGCTATTTTGCAT 58.570 39.130 12.86 0.00 45.23 3.96
4017 7769 4.426416 TGCTTCATGTGCTATTTTGCATC 58.574 39.130 12.86 0.00 45.23 3.91
4018 7770 4.082136 TGCTTCATGTGCTATTTTGCATCA 60.082 37.500 12.86 0.00 45.23 3.07
4019 7771 5.047847 GCTTCATGTGCTATTTTGCATCAT 58.952 37.500 0.00 0.00 45.23 2.45
4021 7773 6.036735 GCTTCATGTGCTATTTTGCATCATTT 59.963 34.615 0.00 0.00 45.23 2.32
4022 7774 7.413657 GCTTCATGTGCTATTTTGCATCATTTT 60.414 33.333 0.00 0.00 45.23 1.82
4023 7775 7.908827 TCATGTGCTATTTTGCATCATTTTT 57.091 28.000 0.00 0.00 45.23 1.94
4024 7776 8.999220 TCATGTGCTATTTTGCATCATTTTTA 57.001 26.923 0.00 0.00 45.23 1.52
4064 8106 5.959652 TGTCGATAATAATGGTGAACGTG 57.040 39.130 0.00 0.00 0.00 4.49
4067 8109 7.034397 TGTCGATAATAATGGTGAACGTGTAA 58.966 34.615 0.00 0.00 0.00 2.41
4069 8111 8.545420 GTCGATAATAATGGTGAACGTGTAAAT 58.455 33.333 0.00 0.00 0.00 1.40
4074 8116 7.696992 ATAATGGTGAACGTGTAAATTTCCT 57.303 32.000 0.00 0.00 0.00 3.36
4075 8117 6.399639 AATGGTGAACGTGTAAATTTCCTT 57.600 33.333 0.00 0.00 0.00 3.36
4078 8120 7.513371 TGGTGAACGTGTAAATTTCCTTATT 57.487 32.000 0.00 0.00 0.00 1.40
4081 8123 9.251792 GGTGAACGTGTAAATTTCCTTATTTTT 57.748 29.630 0.00 0.00 0.00 1.94
4117 8159 9.525826 AATCTCTTCATTGAAAATCTAACACCT 57.474 29.630 0.01 0.00 0.00 4.00
4118 8160 8.924511 TCTCTTCATTGAAAATCTAACACCTT 57.075 30.769 0.01 0.00 0.00 3.50
4119 8161 9.354673 TCTCTTCATTGAAAATCTAACACCTTT 57.645 29.630 0.01 0.00 0.00 3.11
4121 8163 9.748708 TCTTCATTGAAAATCTAACACCTTTTG 57.251 29.630 0.01 0.00 0.00 2.44
4122 8164 9.748708 CTTCATTGAAAATCTAACACCTTTTGA 57.251 29.630 0.01 0.00 0.00 2.69
4124 8166 9.695526 TCATTGAAAATCTAACACCTTTTGATG 57.304 29.630 0.00 0.00 0.00 3.07
4636 8678 8.336806 TCCAAACAAAATAGTTAACGTACACAG 58.663 33.333 0.00 0.00 0.00 3.66
4637 8679 7.112426 CCAAACAAAATAGTTAACGTACACAGC 59.888 37.037 0.00 0.00 0.00 4.40
4638 8680 6.847956 ACAAAATAGTTAACGTACACAGCA 57.152 33.333 0.00 0.00 0.00 4.41
4639 8681 6.884187 ACAAAATAGTTAACGTACACAGCAG 58.116 36.000 0.00 0.00 0.00 4.24
4642 8684 3.022607 AGTTAACGTACACAGCAGGAC 57.977 47.619 0.00 0.00 0.00 3.85
4643 8685 2.064014 GTTAACGTACACAGCAGGACC 58.936 52.381 0.00 0.00 0.00 4.46
4644 8686 0.604578 TAACGTACACAGCAGGACCC 59.395 55.000 0.00 0.00 0.00 4.46
4645 8687 1.404479 AACGTACACAGCAGGACCCA 61.404 55.000 0.00 0.00 0.00 4.51
4646 8688 1.374252 CGTACACAGCAGGACCCAC 60.374 63.158 0.00 0.00 0.00 4.61
4647 8689 1.374252 GTACACAGCAGGACCCACG 60.374 63.158 0.00 0.00 0.00 4.94
4650 8692 1.961277 CACAGCAGGACCCACGAAC 60.961 63.158 0.00 0.00 0.00 3.95
4651 8693 2.140792 ACAGCAGGACCCACGAACT 61.141 57.895 0.00 0.00 0.00 3.01
4652 8694 1.374758 CAGCAGGACCCACGAACTC 60.375 63.158 0.00 0.00 0.00 3.01
4653 8695 1.837051 AGCAGGACCCACGAACTCA 60.837 57.895 0.00 0.00 0.00 3.41
4654 8696 1.194781 AGCAGGACCCACGAACTCAT 61.195 55.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.441695 TGCTCGGCCTGCTCGAAG 62.442 66.667 16.66 0.00 36.15 3.79
5 6 4.441695 CTGCTCGGCCTGCTCGAA 62.442 66.667 16.66 0.00 36.15 3.71
8 9 4.087892 TTCCTGCTCGGCCTGCTC 62.088 66.667 16.66 0.00 0.00 4.26
9 10 4.093291 CTTCCTGCTCGGCCTGCT 62.093 66.667 16.66 0.00 0.00 4.24
11 12 2.125350 GTCTTCCTGCTCGGCCTG 60.125 66.667 0.00 0.00 0.00 4.85
12 13 3.764466 CGTCTTCCTGCTCGGCCT 61.764 66.667 0.00 0.00 0.00 5.19
13 14 3.708220 CTCGTCTTCCTGCTCGGCC 62.708 68.421 0.00 0.00 0.00 6.13
15 16 2.202676 GCTCGTCTTCCTGCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
16 17 1.515952 CTGCTCGTCTTCCTGCTCG 60.516 63.158 0.00 0.00 0.00 5.03
17 18 1.153667 CCTGCTCGTCTTCCTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
18 19 1.882989 GACCTGCTCGTCTTCCTGCT 61.883 60.000 0.00 0.00 0.00 4.24
20 21 0.108898 CTGACCTGCTCGTCTTCCTG 60.109 60.000 5.52 0.00 33.70 3.86
21 22 1.882989 GCTGACCTGCTCGTCTTCCT 61.883 60.000 5.52 0.00 33.70 3.36
22 23 1.446966 GCTGACCTGCTCGTCTTCC 60.447 63.158 5.52 0.00 33.70 3.46
23 24 1.446966 GGCTGACCTGCTCGTCTTC 60.447 63.158 5.52 0.00 33.70 2.87
25 26 3.386237 GGGCTGACCTGCTCGTCT 61.386 66.667 0.00 0.00 35.85 4.18
26 27 3.655810 CTGGGCTGACCTGCTCGTC 62.656 68.421 0.00 0.00 41.11 4.20
27 28 3.699894 CTGGGCTGACCTGCTCGT 61.700 66.667 0.00 0.00 41.11 4.18
29 30 2.267324 GTCTGGGCTGACCTGCTC 59.733 66.667 0.00 0.00 41.11 4.26
32 33 1.374758 GTTCGTCTGGGCTGACCTG 60.375 63.158 0.00 0.00 41.11 4.00
35 36 1.374758 CCTGTTCGTCTGGGCTGAC 60.375 63.158 2.06 2.06 0.00 3.51
36 37 3.059982 CCTGTTCGTCTGGGCTGA 58.940 61.111 0.00 0.00 0.00 4.26
37 38 2.743928 GCCTGTTCGTCTGGGCTG 60.744 66.667 0.00 0.00 41.20 4.85
38 39 4.379243 CGCCTGTTCGTCTGGGCT 62.379 66.667 0.00 0.00 42.13 5.19
39 40 4.373116 TCGCCTGTTCGTCTGGGC 62.373 66.667 0.00 0.00 41.02 5.36
40 41 2.432628 GTCGCCTGTTCGTCTGGG 60.433 66.667 7.89 0.00 35.96 4.45
41 42 2.805353 CGTCGCCTGTTCGTCTGG 60.805 66.667 0.00 0.00 38.06 3.86
42 43 2.805353 CCGTCGCCTGTTCGTCTG 60.805 66.667 0.00 0.00 0.00 3.51
43 44 2.981909 TCCGTCGCCTGTTCGTCT 60.982 61.111 0.00 0.00 0.00 4.18
45 46 4.695231 CGTCCGTCGCCTGTTCGT 62.695 66.667 0.00 0.00 0.00 3.85
48 49 2.048023 TATCCGTCCGTCGCCTGTT 61.048 57.895 0.00 0.00 38.35 3.16
50 51 2.025727 GTATCCGTCCGTCGCCTG 59.974 66.667 0.00 0.00 38.35 4.85
52 53 4.276146 GGGTATCCGTCCGTCGCC 62.276 72.222 0.00 0.00 38.35 5.54
62 63 0.398098 TTGTCCTCCTCCGGGTATCC 60.398 60.000 0.00 0.00 0.00 2.59
63 64 0.751452 GTTGTCCTCCTCCGGGTATC 59.249 60.000 0.00 0.00 0.00 2.24
64 65 0.338814 AGTTGTCCTCCTCCGGGTAT 59.661 55.000 0.00 0.00 0.00 2.73
65 66 1.002069 TAGTTGTCCTCCTCCGGGTA 58.998 55.000 0.00 0.00 0.00 3.69
66 67 0.614134 GTAGTTGTCCTCCTCCGGGT 60.614 60.000 0.00 0.00 0.00 5.28
68 69 1.137086 CATGTAGTTGTCCTCCTCCGG 59.863 57.143 0.00 0.00 0.00 5.14
69 70 1.471676 GCATGTAGTTGTCCTCCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
70 71 1.134371 GGCATGTAGTTGTCCTCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
71 72 1.134371 GGGCATGTAGTTGTCCTCCTC 60.134 57.143 0.00 0.00 38.40 3.71
72 73 0.912486 GGGCATGTAGTTGTCCTCCT 59.088 55.000 0.00 0.00 38.40 3.69
73 74 0.107165 GGGGCATGTAGTTGTCCTCC 60.107 60.000 0.00 0.00 41.32 4.30
74 75 0.107165 GGGGGCATGTAGTTGTCCTC 60.107 60.000 0.00 0.00 41.32 3.71
75 76 1.999346 GGGGGCATGTAGTTGTCCT 59.001 57.895 0.00 0.00 41.32 3.85
76 77 4.657952 GGGGGCATGTAGTTGTCC 57.342 61.111 0.00 0.00 40.82 4.02
90 91 1.043673 AATCTCGTCTTCGGAGGGGG 61.044 60.000 0.00 0.00 37.69 5.40
91 92 1.609555 CTAATCTCGTCTTCGGAGGGG 59.390 57.143 0.00 0.00 37.69 4.79
92 93 1.001158 GCTAATCTCGTCTTCGGAGGG 60.001 57.143 0.00 0.00 37.69 4.30
93 94 1.001158 GGCTAATCTCGTCTTCGGAGG 60.001 57.143 0.00 0.00 37.69 4.30
94 95 1.950909 AGGCTAATCTCGTCTTCGGAG 59.049 52.381 0.00 0.00 37.69 4.63
95 96 1.948145 GAGGCTAATCTCGTCTTCGGA 59.052 52.381 0.00 0.00 37.69 4.55
96 97 2.409152 GAGGCTAATCTCGTCTTCGG 57.591 55.000 0.00 0.00 37.69 4.30
106 107 1.657794 GTCGTCGCCGAGGCTAATC 60.658 63.158 12.70 0.00 45.26 1.75
108 109 1.026182 TTAGTCGTCGCCGAGGCTAA 61.026 55.000 12.70 14.85 45.26 3.09
109 110 1.434622 CTTAGTCGTCGCCGAGGCTA 61.435 60.000 12.70 4.64 45.26 3.93
111 112 2.278013 CTTAGTCGTCGCCGAGGC 60.278 66.667 3.59 3.59 45.26 4.70
112 113 2.408022 CCTTAGTCGTCGCCGAGG 59.592 66.667 0.00 0.00 45.26 4.63
114 115 1.033746 AATCCCTTAGTCGTCGCCGA 61.034 55.000 0.00 0.00 41.73 5.54
115 116 0.870307 CAATCCCTTAGTCGTCGCCG 60.870 60.000 0.00 0.00 0.00 6.46
116 117 1.152383 GCAATCCCTTAGTCGTCGCC 61.152 60.000 0.00 0.00 0.00 5.54
117 118 1.152383 GGCAATCCCTTAGTCGTCGC 61.152 60.000 0.00 0.00 0.00 5.19
118 119 0.460311 AGGCAATCCCTTAGTCGTCG 59.540 55.000 0.00 0.00 43.06 5.12
119 120 2.694109 AGTAGGCAATCCCTTAGTCGTC 59.306 50.000 0.00 0.00 43.06 4.20
120 121 2.748388 AGTAGGCAATCCCTTAGTCGT 58.252 47.619 0.00 0.00 43.06 4.34
121 122 3.821421 AAGTAGGCAATCCCTTAGTCG 57.179 47.619 0.00 0.00 43.06 4.18
142 143 0.520404 CCGAAACTCCTCGAAGACGA 59.480 55.000 0.00 0.00 46.56 4.20
143 144 0.240411 ACCGAAACTCCTCGAAGACG 59.760 55.000 0.00 0.00 41.44 4.18
144 145 1.540707 AGACCGAAACTCCTCGAAGAC 59.459 52.381 0.00 0.00 41.44 3.01
145 146 1.906990 AGACCGAAACTCCTCGAAGA 58.093 50.000 0.00 0.00 41.44 2.87
147 148 2.746362 GACTAGACCGAAACTCCTCGAA 59.254 50.000 0.00 0.00 41.44 3.71
148 149 2.027377 AGACTAGACCGAAACTCCTCGA 60.027 50.000 0.00 0.00 41.44 4.04
150 151 3.375922 CAGAGACTAGACCGAAACTCCTC 59.624 52.174 0.00 0.00 0.00 3.71
151 152 3.244981 ACAGAGACTAGACCGAAACTCCT 60.245 47.826 0.00 0.00 0.00 3.69
152 153 3.083293 ACAGAGACTAGACCGAAACTCC 58.917 50.000 0.00 0.00 0.00 3.85
153 154 3.502979 ACACAGAGACTAGACCGAAACTC 59.497 47.826 0.00 0.00 0.00 3.01
155 156 3.502979 AGACACAGAGACTAGACCGAAAC 59.497 47.826 0.00 0.00 0.00 2.78
156 157 3.752222 GAGACACAGAGACTAGACCGAAA 59.248 47.826 0.00 0.00 0.00 3.46
157 158 3.008157 AGAGACACAGAGACTAGACCGAA 59.992 47.826 0.00 0.00 0.00 4.30
158 159 2.568062 AGAGACACAGAGACTAGACCGA 59.432 50.000 0.00 0.00 0.00 4.69
159 160 2.980568 AGAGACACAGAGACTAGACCG 58.019 52.381 0.00 0.00 0.00 4.79
160 161 3.875134 GCTAGAGACACAGAGACTAGACC 59.125 52.174 0.00 0.00 34.36 3.85
161 162 3.554324 CGCTAGAGACACAGAGACTAGAC 59.446 52.174 0.00 0.00 34.36 2.59
162 163 3.447944 TCGCTAGAGACACAGAGACTAGA 59.552 47.826 0.00 0.00 34.36 2.43
163 164 3.787785 TCGCTAGAGACACAGAGACTAG 58.212 50.000 0.00 0.00 35.21 2.57
164 165 3.889520 TCGCTAGAGACACAGAGACTA 57.110 47.619 0.00 0.00 0.00 2.59
165 166 2.772077 TCGCTAGAGACACAGAGACT 57.228 50.000 0.00 0.00 0.00 3.24
166 167 3.332761 CATCGCTAGAGACACAGAGAC 57.667 52.381 0.00 0.00 0.00 3.36
546 547 1.341976 GGTGGGCCACAACTCCAATAT 60.342 52.381 35.69 0.00 35.86 1.28
547 548 0.039035 GGTGGGCCACAACTCCAATA 59.961 55.000 35.69 0.00 35.86 1.90
548 549 1.228862 GGTGGGCCACAACTCCAAT 60.229 57.895 35.69 0.00 35.86 3.16
549 550 2.197324 GGTGGGCCACAACTCCAA 59.803 61.111 35.69 0.00 35.86 3.53
550 551 2.776526 AGGTGGGCCACAACTCCA 60.777 61.111 35.69 0.00 46.59 3.86
554 555 1.299976 CTAGGAGGTGGGCCACAAC 59.700 63.158 35.69 26.73 35.86 3.32
556 557 1.612442 GACTAGGAGGTGGGCCACA 60.612 63.158 35.69 15.84 35.86 4.17
557 558 0.910088 AAGACTAGGAGGTGGGCCAC 60.910 60.000 28.69 28.69 37.19 5.01
558 559 0.909610 CAAGACTAGGAGGTGGGCCA 60.910 60.000 0.00 0.00 37.19 5.36
559 560 0.910088 ACAAGACTAGGAGGTGGGCC 60.910 60.000 0.00 0.00 0.00 5.80
560 561 1.861982 TACAAGACTAGGAGGTGGGC 58.138 55.000 0.00 0.00 0.00 5.36
561 562 6.326583 TCAATTATACAAGACTAGGAGGTGGG 59.673 42.308 0.00 0.00 0.00 4.61
562 563 7.361457 TCAATTATACAAGACTAGGAGGTGG 57.639 40.000 0.00 0.00 0.00 4.61
565 566 7.604657 ACCTCAATTATACAAGACTAGGAGG 57.395 40.000 0.00 0.00 42.90 4.30
566 567 9.575868 TCTACCTCAATTATACAAGACTAGGAG 57.424 37.037 0.00 0.00 0.00 3.69
568 569 8.798402 CCTCTACCTCAATTATACAAGACTAGG 58.202 40.741 0.00 0.00 0.00 3.02
570 571 7.232941 GGCCTCTACCTCAATTATACAAGACTA 59.767 40.741 0.00 0.00 0.00 2.59
571 572 6.042208 GGCCTCTACCTCAATTATACAAGACT 59.958 42.308 0.00 0.00 0.00 3.24
572 573 6.042208 AGGCCTCTACCTCAATTATACAAGAC 59.958 42.308 0.00 0.00 33.62 3.01
577 578 5.280062 GGGAAGGCCTCTACCTCAATTATAC 60.280 48.000 5.23 0.00 39.93 1.47
579 580 3.653352 GGGAAGGCCTCTACCTCAATTAT 59.347 47.826 5.23 0.00 39.93 1.28
580 581 3.046374 GGGAAGGCCTCTACCTCAATTA 58.954 50.000 5.23 0.00 39.93 1.40
581 582 1.847088 GGGAAGGCCTCTACCTCAATT 59.153 52.381 5.23 0.00 39.93 2.32
582 583 1.010170 AGGGAAGGCCTCTACCTCAAT 59.990 52.381 5.23 0.00 39.93 2.57
583 584 0.417841 AGGGAAGGCCTCTACCTCAA 59.582 55.000 5.23 0.00 39.93 3.02
584 585 0.417841 AAGGGAAGGCCTCTACCTCA 59.582 55.000 19.66 0.00 39.93 3.86
585 586 0.833949 CAAGGGAAGGCCTCTACCTC 59.166 60.000 19.66 7.95 39.93 3.85
586 587 0.119358 ACAAGGGAAGGCCTCTACCT 59.881 55.000 5.23 11.73 43.91 3.08
587 588 1.875488 TACAAGGGAAGGCCTCTACC 58.125 55.000 5.23 9.20 0.00 3.18
588 589 4.505324 AATTACAAGGGAAGGCCTCTAC 57.495 45.455 5.23 0.03 0.00 2.59
589 590 9.799223 ATATATAATTACAAGGGAAGGCCTCTA 57.201 33.333 5.23 0.00 0.00 2.43
590 591 8.701643 ATATATAATTACAAGGGAAGGCCTCT 57.298 34.615 5.23 0.00 0.00 3.69
591 592 9.833917 GTATATATAATTACAAGGGAAGGCCTC 57.166 37.037 5.23 0.00 0.00 4.70
592 593 8.483758 CGTATATATAATTACAAGGGAAGGCCT 58.516 37.037 0.00 0.00 0.00 5.19
593 594 8.262933 ACGTATATATAATTACAAGGGAAGGCC 58.737 37.037 0.00 0.00 0.00 5.19
595 596 9.095065 GCACGTATATATAATTACAAGGGAAGG 57.905 37.037 0.00 0.00 0.00 3.46
596 597 9.647797 TGCACGTATATATAATTACAAGGGAAG 57.352 33.333 0.00 0.00 0.00 3.46
597 598 9.426837 GTGCACGTATATATAATTACAAGGGAA 57.573 33.333 0.00 0.00 0.00 3.97
598 599 8.036575 GGTGCACGTATATATAATTACAAGGGA 58.963 37.037 11.45 0.00 0.00 4.20
600 601 8.766000 TGGTGCACGTATATATAATTACAAGG 57.234 34.615 11.45 0.00 0.00 3.61
601 602 8.380644 GCTGGTGCACGTATATATAATTACAAG 58.619 37.037 11.45 0.00 39.41 3.16
602 603 7.873505 TGCTGGTGCACGTATATATAATTACAA 59.126 33.333 11.45 0.00 45.31 2.41
603 604 7.379750 TGCTGGTGCACGTATATATAATTACA 58.620 34.615 11.45 0.00 45.31 2.41
604 605 7.821595 TGCTGGTGCACGTATATATAATTAC 57.178 36.000 11.45 0.00 45.31 1.89
620 621 0.395586 TATTGATGGGGTGCTGGTGC 60.396 55.000 0.00 0.00 40.20 5.01
621 622 2.369983 ATATTGATGGGGTGCTGGTG 57.630 50.000 0.00 0.00 0.00 4.17
622 623 3.747388 CGTTATATTGATGGGGTGCTGGT 60.747 47.826 0.00 0.00 0.00 4.00
623 624 2.813754 CGTTATATTGATGGGGTGCTGG 59.186 50.000 0.00 0.00 0.00 4.85
624 625 3.738982 TCGTTATATTGATGGGGTGCTG 58.261 45.455 0.00 0.00 0.00 4.41
625 626 4.640771 ATCGTTATATTGATGGGGTGCT 57.359 40.909 0.00 0.00 0.00 4.40
626 627 7.094377 ACAATAATCGTTATATTGATGGGGTGC 60.094 37.037 17.87 0.00 41.25 5.01
641 642 8.921670 GGAAAAGTTTGCAATACAATAATCGTT 58.078 29.630 0.00 0.00 38.31 3.85
644 645 8.460831 ACGGAAAAGTTTGCAATACAATAATC 57.539 30.769 0.00 0.00 38.31 1.75
645 646 8.303876 AGACGGAAAAGTTTGCAATACAATAAT 58.696 29.630 0.00 0.00 38.31 1.28
647 648 7.209471 AGACGGAAAAGTTTGCAATACAATA 57.791 32.000 0.00 0.00 38.31 1.90
648 649 6.084326 AGACGGAAAAGTTTGCAATACAAT 57.916 33.333 0.00 0.00 38.31 2.71
649 650 5.508200 AGACGGAAAAGTTTGCAATACAA 57.492 34.783 0.00 0.00 36.13 2.41
651 652 5.992729 TGTAGACGGAAAAGTTTGCAATAC 58.007 37.500 0.00 1.64 0.00 1.89
652 653 6.428465 TGATGTAGACGGAAAAGTTTGCAATA 59.572 34.615 0.00 0.00 0.00 1.90
655 656 4.130857 TGATGTAGACGGAAAAGTTTGCA 58.869 39.130 0.00 0.00 0.00 4.08
656 657 4.742438 TGATGTAGACGGAAAAGTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
658 659 6.937436 AAGTTGATGTAGACGGAAAAGTTT 57.063 33.333 0.00 0.00 0.00 2.66
660 661 7.307811 GCTTAAAGTTGATGTAGACGGAAAAGT 60.308 37.037 0.00 0.00 0.00 2.66
661 662 7.015877 GCTTAAAGTTGATGTAGACGGAAAAG 58.984 38.462 0.00 0.00 0.00 2.27
664 665 4.624024 CGCTTAAAGTTGATGTAGACGGAA 59.376 41.667 0.00 0.00 0.00 4.30
665 666 4.171005 CGCTTAAAGTTGATGTAGACGGA 58.829 43.478 0.00 0.00 0.00 4.69
666 667 3.241995 GCGCTTAAAGTTGATGTAGACGG 60.242 47.826 0.00 0.00 0.00 4.79
667 668 3.241995 GGCGCTTAAAGTTGATGTAGACG 60.242 47.826 7.64 0.00 0.00 4.18
668 669 3.682858 TGGCGCTTAAAGTTGATGTAGAC 59.317 43.478 7.64 0.00 0.00 2.59
669 670 3.682858 GTGGCGCTTAAAGTTGATGTAGA 59.317 43.478 7.64 0.00 0.00 2.59
670 671 3.435327 TGTGGCGCTTAAAGTTGATGTAG 59.565 43.478 7.64 0.00 0.00 2.74
671 672 3.403968 TGTGGCGCTTAAAGTTGATGTA 58.596 40.909 7.64 0.00 0.00 2.29
672 673 2.226330 TGTGGCGCTTAAAGTTGATGT 58.774 42.857 7.64 0.00 0.00 3.06
673 674 2.987413 TGTGGCGCTTAAAGTTGATG 57.013 45.000 7.64 0.00 0.00 3.07
674 675 4.142469 GGTAATGTGGCGCTTAAAGTTGAT 60.142 41.667 7.64 0.00 0.00 2.57
676 677 3.190535 AGGTAATGTGGCGCTTAAAGTTG 59.809 43.478 7.64 0.00 0.00 3.16
677 678 3.418047 AGGTAATGTGGCGCTTAAAGTT 58.582 40.909 7.64 0.00 0.00 2.66
678 679 3.007635 GAGGTAATGTGGCGCTTAAAGT 58.992 45.455 7.64 0.00 0.00 2.66
679 680 3.270877 AGAGGTAATGTGGCGCTTAAAG 58.729 45.455 7.64 0.00 0.00 1.85
682 683 3.343941 AAAGAGGTAATGTGGCGCTTA 57.656 42.857 7.64 0.00 0.00 3.09
684 685 2.084546 GAAAAGAGGTAATGTGGCGCT 58.915 47.619 7.64 0.00 0.00 5.92
685 686 1.810151 TGAAAAGAGGTAATGTGGCGC 59.190 47.619 0.00 0.00 0.00 6.53
686 687 3.440173 ACATGAAAAGAGGTAATGTGGCG 59.560 43.478 0.00 0.00 30.53 5.69
687 688 5.648092 AGTACATGAAAAGAGGTAATGTGGC 59.352 40.000 0.00 0.00 33.67 5.01
688 689 6.316390 GGAGTACATGAAAAGAGGTAATGTGG 59.684 42.308 0.00 0.00 33.67 4.17
689 690 6.316390 GGGAGTACATGAAAAGAGGTAATGTG 59.684 42.308 0.00 0.00 33.67 3.21
690 691 6.215636 AGGGAGTACATGAAAAGAGGTAATGT 59.784 38.462 0.00 0.00 35.70 2.71
691 692 6.653989 AGGGAGTACATGAAAAGAGGTAATG 58.346 40.000 0.00 0.00 0.00 1.90
692 693 6.674419 AGAGGGAGTACATGAAAAGAGGTAAT 59.326 38.462 0.00 0.00 0.00 1.89
694 695 5.590818 AGAGGGAGTACATGAAAAGAGGTA 58.409 41.667 0.00 0.00 0.00 3.08
695 696 4.430441 AGAGGGAGTACATGAAAAGAGGT 58.570 43.478 0.00 0.00 0.00 3.85
696 697 6.553100 AGATAGAGGGAGTACATGAAAAGAGG 59.447 42.308 0.00 0.00 0.00 3.69
699 700 7.353414 TGAGATAGAGGGAGTACATGAAAAG 57.647 40.000 0.00 0.00 0.00 2.27
700 701 7.921041 ATGAGATAGAGGGAGTACATGAAAA 57.079 36.000 0.00 0.00 0.00 2.29
701 702 9.607333 ATTATGAGATAGAGGGAGTACATGAAA 57.393 33.333 0.00 0.00 0.00 2.69
730 731 9.816354 AGCTAAAACAGTTTGAATAATGTTGTT 57.184 25.926 0.00 0.00 36.09 2.83
767 768 9.953565 CCTCTCCGTCCCAATAATAATATAAAA 57.046 33.333 0.00 0.00 0.00 1.52
768 769 8.044908 GCCTCTCCGTCCCAATAATAATATAAA 58.955 37.037 0.00 0.00 0.00 1.40
769 770 7.365295 GGCCTCTCCGTCCCAATAATAATATAA 60.365 40.741 0.00 0.00 0.00 0.98
770 771 6.099269 GGCCTCTCCGTCCCAATAATAATATA 59.901 42.308 0.00 0.00 0.00 0.86
773 774 3.009143 GGCCTCTCCGTCCCAATAATAAT 59.991 47.826 0.00 0.00 0.00 1.28
776 777 0.765510 GGCCTCTCCGTCCCAATAAT 59.234 55.000 0.00 0.00 0.00 1.28
777 778 0.326238 AGGCCTCTCCGTCCCAATAA 60.326 55.000 0.00 0.00 40.77 1.40
778 779 0.759436 GAGGCCTCTCCGTCCCAATA 60.759 60.000 26.25 0.00 40.77 1.90
779 780 2.041265 AGGCCTCTCCGTCCCAAT 59.959 61.111 0.00 0.00 40.77 3.16
780 781 2.683933 GAGGCCTCTCCGTCCCAA 60.684 66.667 26.25 0.00 40.77 4.12
783 784 1.228184 TATCGAGGCCTCTCCGTCC 60.228 63.158 29.73 2.97 40.77 4.79
784 785 0.535553 AGTATCGAGGCCTCTCCGTC 60.536 60.000 29.73 15.65 40.77 4.79
787 788 1.158434 CGTAGTATCGAGGCCTCTCC 58.842 60.000 29.73 14.37 36.70 3.71
788 789 1.158434 CCGTAGTATCGAGGCCTCTC 58.842 60.000 29.73 16.63 36.69 3.20
789 790 0.890090 GCCGTAGTATCGAGGCCTCT 60.890 60.000 29.73 15.31 43.54 3.69
790 791 1.580437 GCCGTAGTATCGAGGCCTC 59.420 63.158 23.79 23.79 43.54 4.70
791 792 3.760917 GCCGTAGTATCGAGGCCT 58.239 61.111 3.86 3.86 43.54 5.19
794 795 0.966920 ATTGGGCCGTAGTATCGAGG 59.033 55.000 0.00 0.00 0.00 4.63
795 796 2.094854 GGTATTGGGCCGTAGTATCGAG 60.095 54.545 0.00 0.00 0.00 4.04
798 799 2.358939 CGGTATTGGGCCGTAGTATC 57.641 55.000 0.00 0.00 43.84 2.24
808 809 0.834612 TTAGTCAGGCCGGTATTGGG 59.165 55.000 1.90 0.00 0.00 4.12
809 810 1.474498 GGTTAGTCAGGCCGGTATTGG 60.474 57.143 1.90 0.00 0.00 3.16
810 811 1.474498 GGGTTAGTCAGGCCGGTATTG 60.474 57.143 1.90 0.00 0.00 1.90
811 812 0.835276 GGGTTAGTCAGGCCGGTATT 59.165 55.000 1.90 0.00 0.00 1.89
812 813 0.031414 AGGGTTAGTCAGGCCGGTAT 60.031 55.000 1.90 0.00 0.00 2.73
813 814 0.630673 TAGGGTTAGTCAGGCCGGTA 59.369 55.000 1.90 0.00 0.00 4.02
815 816 0.906775 TTTAGGGTTAGTCAGGCCGG 59.093 55.000 0.00 0.00 0.00 6.13
816 817 2.773993 TTTTAGGGTTAGTCAGGCCG 57.226 50.000 0.00 0.00 0.00 6.13
837 838 0.107848 CGGAGTCAGGCCGGTATTTT 60.108 55.000 1.90 0.00 44.87 1.82
838 839 1.520666 CGGAGTCAGGCCGGTATTT 59.479 57.895 1.90 0.00 44.87 1.40
839 840 3.217231 CGGAGTCAGGCCGGTATT 58.783 61.111 1.90 0.00 44.87 1.89
845 846 3.851128 GGGCTACGGAGTCAGGCC 61.851 72.222 0.00 5.89 43.93 5.19
846 847 1.455217 TAGGGCTACGGAGTCAGGC 60.455 63.158 0.00 0.00 43.93 4.85
847 848 1.108132 GGTAGGGCTACGGAGTCAGG 61.108 65.000 0.00 0.00 43.93 3.86
848 849 1.445716 CGGTAGGGCTACGGAGTCAG 61.446 65.000 0.00 0.00 43.93 3.51
849 850 1.452651 CGGTAGGGCTACGGAGTCA 60.453 63.158 0.00 0.00 43.93 3.41
850 851 1.443322 GACGGTAGGGCTACGGAGTC 61.443 65.000 0.00 0.00 43.93 3.36
852 853 1.452651 TGACGGTAGGGCTACGGAG 60.453 63.158 0.00 0.00 39.00 4.63
854 855 2.803479 GTGACGGTAGGGCTACGG 59.197 66.667 0.00 0.00 40.73 4.02
855 856 1.647545 TTCGTGACGGTAGGGCTACG 61.648 60.000 4.70 0.00 36.94 3.51
856 857 0.527565 TTTCGTGACGGTAGGGCTAC 59.472 55.000 4.70 0.00 35.40 3.58
857 858 1.203052 CTTTTCGTGACGGTAGGGCTA 59.797 52.381 4.70 0.00 0.00 3.93
859 860 1.632948 GCTTTTCGTGACGGTAGGGC 61.633 60.000 4.70 0.14 0.00 5.19
860 861 1.017701 GGCTTTTCGTGACGGTAGGG 61.018 60.000 4.70 0.00 0.00 3.53
862 863 0.788391 GTGGCTTTTCGTGACGGTAG 59.212 55.000 4.70 1.31 0.00 3.18
864 865 1.890510 GGTGGCTTTTCGTGACGGT 60.891 57.895 4.70 0.00 0.00 4.83
865 866 1.234615 ATGGTGGCTTTTCGTGACGG 61.235 55.000 4.70 0.00 0.00 4.79
866 867 0.165944 GATGGTGGCTTTTCGTGACG 59.834 55.000 0.00 0.00 0.00 4.35
868 869 1.808411 GAGATGGTGGCTTTTCGTGA 58.192 50.000 0.00 0.00 0.00 4.35
869 870 0.443869 CGAGATGGTGGCTTTTCGTG 59.556 55.000 0.00 0.00 0.00 4.35
870 871 0.034896 ACGAGATGGTGGCTTTTCGT 59.965 50.000 0.00 0.00 36.57 3.85
871 872 0.721718 GACGAGATGGTGGCTTTTCG 59.278 55.000 0.00 0.00 0.00 3.46
872 873 2.003301 GAGACGAGATGGTGGCTTTTC 58.997 52.381 0.00 0.00 0.00 2.29
873 874 1.625818 AGAGACGAGATGGTGGCTTTT 59.374 47.619 0.00 0.00 0.00 2.27
874 875 1.205893 GAGAGACGAGATGGTGGCTTT 59.794 52.381 0.00 0.00 0.00 3.51
875 876 0.820871 GAGAGACGAGATGGTGGCTT 59.179 55.000 0.00 0.00 0.00 4.35
876 877 1.380403 CGAGAGACGAGATGGTGGCT 61.380 60.000 0.00 0.00 45.77 4.75
877 878 1.064946 CGAGAGACGAGATGGTGGC 59.935 63.158 0.00 0.00 45.77 5.01
878 879 1.729470 CCCGAGAGACGAGATGGTGG 61.729 65.000 0.00 0.00 45.77 4.61
879 880 1.032657 ACCCGAGAGACGAGATGGTG 61.033 60.000 0.00 0.00 45.77 4.17
880 881 0.748729 GACCCGAGAGACGAGATGGT 60.749 60.000 0.00 0.00 45.77 3.55
881 882 0.464735 AGACCCGAGAGACGAGATGG 60.465 60.000 0.00 0.00 45.77 3.51
882 883 0.660488 CAGACCCGAGAGACGAGATG 59.340 60.000 0.00 0.00 45.77 2.90
884 885 1.078356 CCAGACCCGAGAGACGAGA 60.078 63.158 0.00 0.00 45.77 4.04
885 886 2.115911 CCCAGACCCGAGAGACGAG 61.116 68.421 0.00 0.00 45.77 4.18
887 888 3.827898 GCCCAGACCCGAGAGACG 61.828 72.222 0.00 0.00 42.18 4.18
888 889 3.462678 GGCCCAGACCCGAGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
889 890 2.822643 AATGGCCCAGACCCGAGAGA 62.823 60.000 0.00 0.00 0.00 3.10
890 891 2.317149 GAATGGCCCAGACCCGAGAG 62.317 65.000 0.00 0.00 0.00 3.20
892 893 2.190578 GAATGGCCCAGACCCGAG 59.809 66.667 0.00 0.00 0.00 4.63
903 904 1.675720 CGGTTTGATGGGGGAATGGC 61.676 60.000 0.00 0.00 0.00 4.40
904 905 0.033601 TCGGTTTGATGGGGGAATGG 60.034 55.000 0.00 0.00 0.00 3.16
905 906 1.846007 TTCGGTTTGATGGGGGAATG 58.154 50.000 0.00 0.00 0.00 2.67
907 908 1.341581 GGATTCGGTTTGATGGGGGAA 60.342 52.381 0.00 0.00 0.00 3.97
909 910 0.755327 GGGATTCGGTTTGATGGGGG 60.755 60.000 0.00 0.00 0.00 5.40
910 911 0.755327 GGGGATTCGGTTTGATGGGG 60.755 60.000 0.00 0.00 0.00 4.96
911 912 0.033601 TGGGGATTCGGTTTGATGGG 60.034 55.000 0.00 0.00 0.00 4.00
912 913 1.102978 GTGGGGATTCGGTTTGATGG 58.897 55.000 0.00 0.00 0.00 3.51
913 914 0.732571 CGTGGGGATTCGGTTTGATG 59.267 55.000 0.00 0.00 0.00 3.07
914 915 0.326927 ACGTGGGGATTCGGTTTGAT 59.673 50.000 0.00 0.00 0.00 2.57
916 917 1.303091 GGACGTGGGGATTCGGTTTG 61.303 60.000 0.00 0.00 0.00 2.93
917 918 1.002990 GGACGTGGGGATTCGGTTT 60.003 57.895 0.00 0.00 0.00 3.27
918 919 1.896122 GAGGACGTGGGGATTCGGTT 61.896 60.000 0.00 0.00 0.00 4.44
919 920 2.284405 AGGACGTGGGGATTCGGT 60.284 61.111 0.00 0.00 0.00 4.69
920 921 2.058595 AGAGGACGTGGGGATTCGG 61.059 63.158 0.00 0.00 0.00 4.30
921 922 1.141881 CAGAGGACGTGGGGATTCG 59.858 63.158 0.00 0.00 0.00 3.34
923 924 1.265454 GGTCAGAGGACGTGGGGATT 61.265 60.000 0.00 0.00 45.28 3.01
926 927 2.283966 AGGTCAGAGGACGTGGGG 60.284 66.667 0.00 0.00 45.28 4.96
927 928 2.701780 CGAGGTCAGAGGACGTGGG 61.702 68.421 0.00 0.00 45.28 4.61
928 929 1.524863 AACGAGGTCAGAGGACGTGG 61.525 60.000 0.00 0.00 45.28 4.94
929 930 0.109689 GAACGAGGTCAGAGGACGTG 60.110 60.000 0.00 0.00 45.28 4.49
931 932 1.507174 GGAACGAGGTCAGAGGACG 59.493 63.158 0.00 0.00 45.28 4.79
932 933 1.605971 GGGGAACGAGGTCAGAGGAC 61.606 65.000 0.00 0.00 43.55 3.85
933 934 1.305046 GGGGAACGAGGTCAGAGGA 60.305 63.158 0.00 0.00 0.00 3.71
934 935 1.609501 TGGGGAACGAGGTCAGAGG 60.610 63.158 0.00 0.00 0.00 3.69
935 936 1.592223 GTGGGGAACGAGGTCAGAG 59.408 63.158 0.00 0.00 0.00 3.35
936 937 1.911766 GGTGGGGAACGAGGTCAGA 60.912 63.158 0.00 0.00 0.00 3.27
937 938 2.663196 GGTGGGGAACGAGGTCAG 59.337 66.667 0.00 0.00 0.00 3.51
938 939 2.926242 GGGTGGGGAACGAGGTCA 60.926 66.667 0.00 0.00 0.00 4.02
939 940 4.078516 CGGGTGGGGAACGAGGTC 62.079 72.222 0.00 0.00 0.00 3.85
940 941 4.626402 TCGGGTGGGGAACGAGGT 62.626 66.667 0.00 0.00 32.29 3.85
941 942 2.588856 GATTCGGGTGGGGAACGAGG 62.589 65.000 0.00 0.00 37.95 4.63
942 943 1.153429 GATTCGGGTGGGGAACGAG 60.153 63.158 0.00 0.00 37.95 4.18
944 945 2.124860 GGATTCGGGTGGGGAACG 60.125 66.667 0.00 0.00 0.00 3.95
945 946 2.124860 CGGATTCGGGTGGGGAAC 60.125 66.667 0.00 0.00 0.00 3.62
980 981 2.811317 CCACGCGAGAGTTCTGGC 60.811 66.667 15.93 6.11 43.09 4.85
981 982 2.811317 GCCACGCGAGAGTTCTGG 60.811 66.667 15.93 9.56 0.00 3.86
999 1000 6.686630 ACAGAGTTTCTCCGATGATATCATC 58.313 40.000 28.70 28.70 46.93 2.92
1002 1003 6.325919 AGACAGAGTTTCTCCGATGATATC 57.674 41.667 0.00 0.00 0.00 1.63
1004 1005 5.163509 CCAAGACAGAGTTTCTCCGATGATA 60.164 44.000 0.00 0.00 0.00 2.15
1005 1006 4.382470 CCAAGACAGAGTTTCTCCGATGAT 60.382 45.833 0.00 0.00 0.00 2.45
1007 1008 3.056536 TCCAAGACAGAGTTTCTCCGATG 60.057 47.826 0.00 0.00 0.00 3.84
1008 1009 3.165875 TCCAAGACAGAGTTTCTCCGAT 58.834 45.455 0.00 0.00 0.00 4.18
1010 1011 2.928731 GCTCCAAGACAGAGTTTCTCCG 60.929 54.545 0.00 0.00 33.69 4.63
1011 1012 2.037772 TGCTCCAAGACAGAGTTTCTCC 59.962 50.000 0.00 0.00 33.69 3.71
1012 1013 3.006323 TCTGCTCCAAGACAGAGTTTCTC 59.994 47.826 0.00 0.00 37.99 2.87
1013 1014 2.968574 TCTGCTCCAAGACAGAGTTTCT 59.031 45.455 0.00 0.00 37.99 2.52
1014 1015 3.063485 GTCTGCTCCAAGACAGAGTTTC 58.937 50.000 0.00 0.00 44.98 2.78
1015 1016 2.546795 CGTCTGCTCCAAGACAGAGTTT 60.547 50.000 5.30 0.00 45.77 2.66
1016 1017 1.000283 CGTCTGCTCCAAGACAGAGTT 60.000 52.381 5.30 0.00 45.77 3.01
1017 1018 0.600557 CGTCTGCTCCAAGACAGAGT 59.399 55.000 5.30 0.00 45.77 3.24
1018 1019 0.108898 CCGTCTGCTCCAAGACAGAG 60.109 60.000 5.30 0.00 45.77 3.35
1019 1020 1.536073 CCCGTCTGCTCCAAGACAGA 61.536 60.000 5.30 0.00 45.77 3.41
1020 1021 1.079543 CCCGTCTGCTCCAAGACAG 60.080 63.158 5.30 0.00 45.77 3.51
1021 1022 1.118965 TTCCCGTCTGCTCCAAGACA 61.119 55.000 5.30 0.00 45.77 3.41
1022 1023 0.670854 GTTCCCGTCTGCTCCAAGAC 60.671 60.000 0.00 0.00 42.68 3.01
1023 1024 1.671742 GTTCCCGTCTGCTCCAAGA 59.328 57.895 0.00 0.00 0.00 3.02
1024 1025 1.376037 GGTTCCCGTCTGCTCCAAG 60.376 63.158 0.00 0.00 0.00 3.61
1026 1027 3.691342 CGGTTCCCGTCTGCTCCA 61.691 66.667 0.00 0.00 42.73 3.86
1037 1038 1.753078 GGATGGGAAAGGCGGTTCC 60.753 63.158 12.95 12.95 45.54 3.62
1038 1039 1.753078 GGGATGGGAAAGGCGGTTC 60.753 63.158 0.00 0.00 0.00 3.62
1039 1040 2.359011 GGGATGGGAAAGGCGGTT 59.641 61.111 0.00 0.00 0.00 4.44
1040 1041 4.109675 CGGGATGGGAAAGGCGGT 62.110 66.667 0.00 0.00 0.00 5.68
1061 1062 4.189188 CGCTGTCGAGGTACCCGG 62.189 72.222 18.74 7.99 38.10 5.73
1065 1066 1.514443 GCAGACGCTGTCGAGGTAC 60.514 63.158 8.32 0.00 37.67 3.34
1104 1106 3.124921 CCCATGTCCGACGGCAAC 61.125 66.667 9.66 3.59 0.00 4.17
1153 1158 1.278238 GTACCGCCGATCTTGACAAG 58.722 55.000 9.03 9.03 0.00 3.16
1154 1159 0.457166 CGTACCGCCGATCTTGACAA 60.457 55.000 0.00 0.00 0.00 3.18
1163 1168 1.451927 AGGATACACGTACCGCCGA 60.452 57.895 0.00 0.00 41.41 5.54
1172 1177 3.363970 GCACAAAGAACACAGGATACACG 60.364 47.826 0.00 0.00 41.41 4.49
1180 1209 9.760660 GATTAATAAGTAGCACAAAGAACACAG 57.239 33.333 0.00 0.00 0.00 3.66
1189 1218 8.067784 GCGCAAATAGATTAATAAGTAGCACAA 58.932 33.333 0.30 0.00 0.00 3.33
1191 1220 7.015877 GGCGCAAATAGATTAATAAGTAGCAC 58.984 38.462 10.83 0.00 0.00 4.40
1201 1230 4.274950 GGCTAGTTGGCGCAAATAGATTAA 59.725 41.667 22.25 0.00 42.33 1.40
1203 1232 2.618709 GGCTAGTTGGCGCAAATAGATT 59.381 45.455 22.25 3.49 42.33 2.40
1207 1236 1.742831 CTTGGCTAGTTGGCGCAAATA 59.257 47.619 10.83 4.68 45.14 1.40
1243 1272 4.499758 GTGAATCTGCGCAGTAAGTACTAC 59.500 45.833 34.70 19.45 34.13 2.73
1403 3386 4.227197 ACCTATCACCTTCATCGGAATCT 58.773 43.478 0.00 0.00 31.34 2.40
1406 3389 3.181479 CGAACCTATCACCTTCATCGGAA 60.181 47.826 0.00 0.00 0.00 4.30
1416 3399 0.172803 ACGTCTGCGAACCTATCACC 59.827 55.000 0.00 0.00 42.00 4.02
1524 4569 3.941483 CCCTGAAGAATTTGTAGCATCGT 59.059 43.478 0.00 0.00 0.00 3.73
1645 4696 0.179089 CATCCTCGTTCTGGCTCAGG 60.179 60.000 2.86 0.00 31.51 3.86
1649 4700 2.586792 GGCATCCTCGTTCTGGCT 59.413 61.111 0.00 0.00 33.09 4.75
1784 4956 7.552687 TCAAGTGTAGATAAATACAAGCTTGGG 59.447 37.037 29.18 6.83 38.74 4.12
1842 5040 8.885494 AATTAGCTGCAAATGTAGAAAACAAA 57.115 26.923 1.02 0.00 42.70 2.83
1932 5130 4.044308 TGGGGTAAGAATAGGATGCAGAA 58.956 43.478 0.00 0.00 0.00 3.02
2066 5264 9.601971 CATAATTGTTCCATTTTGAAAGCAAAG 57.398 29.630 0.00 0.00 44.18 2.77
2198 5747 4.561326 GCAACCAAACAGCTTCCATTACAT 60.561 41.667 0.00 0.00 0.00 2.29
2205 5754 1.661509 GCGCAACCAAACAGCTTCC 60.662 57.895 0.30 0.00 0.00 3.46
2236 5785 6.036577 TCCAACCTTATGAAAAATTCCTGC 57.963 37.500 0.00 0.00 0.00 4.85
2426 5980 9.933723 CTTGGTTCATAGGAATTTCAAAGAAAT 57.066 29.630 0.00 0.00 35.05 2.17
2432 5986 5.185635 CCTGCTTGGTTCATAGGAATTTCAA 59.814 40.000 0.00 0.00 35.05 2.69
2704 6407 9.690913 ACTATTGGATGTATAGCATTTGCATAT 57.309 29.630 5.20 3.19 45.16 1.78
2713 6433 5.887214 ACCACACTATTGGATGTATAGCA 57.113 39.130 0.00 0.00 39.24 3.49
2895 6615 6.767524 TTTATCGTTGGTTATCTTGCCAAT 57.232 33.333 0.00 0.00 45.22 3.16
3092 6831 4.331968 AGGATCCTGCAATTTAACAACGA 58.668 39.130 15.29 0.00 0.00 3.85
3124 6863 0.737715 CGACAAGGGCTACAGAGTGC 60.738 60.000 0.00 0.00 0.00 4.40
3305 7055 4.153117 CACAGTCTATTTCCAAGCTGACAC 59.847 45.833 0.00 0.00 0.00 3.67
3340 7090 2.615869 GATCACTGCCTCAACACTCTC 58.384 52.381 0.00 0.00 0.00 3.20
3384 7134 1.019673 CGAATCTCACATGGCAAGGG 58.980 55.000 0.00 0.00 0.00 3.95
3532 7282 6.550854 TGAAAGATCCACTGGAAAACTGATTT 59.449 34.615 0.66 0.00 34.34 2.17
3551 7301 1.886222 CGGCATTTCCACCCTGAAAGA 60.886 52.381 0.00 0.00 37.63 2.52
3552 7302 0.527565 CGGCATTTCCACCCTGAAAG 59.472 55.000 0.00 0.00 37.63 2.62
3627 7377 3.433957 CCGTCGATGGATAAAAACACACA 59.566 43.478 19.48 0.00 0.00 3.72
3732 7483 3.250617 AGGGCACAAAAGGAAATCCAAT 58.749 40.909 1.67 0.00 38.89 3.16
3829 7581 2.335752 GCCAGAGTCATGCATATCTCG 58.664 52.381 18.30 14.51 32.90 4.04
3853 7605 6.328672 AGCTTAACATATCTGGAGTTCAGGAT 59.671 38.462 0.00 0.00 43.53 3.24
3936 7688 6.519382 CGGGCATTTGTACCAGTAGGATATAA 60.519 42.308 0.00 0.00 38.69 0.98
3945 7697 1.241315 GCACGGGCATTTGTACCAGT 61.241 55.000 3.77 0.00 40.72 4.00
3946 7698 1.506262 GCACGGGCATTTGTACCAG 59.494 57.895 3.77 0.00 40.72 4.00
3947 7699 2.328856 CGCACGGGCATTTGTACCA 61.329 57.895 11.77 0.00 41.24 3.25
3948 7700 1.858372 AACGCACGGGCATTTGTACC 61.858 55.000 11.77 0.00 41.24 3.34
3949 7701 0.727793 CAACGCACGGGCATTTGTAC 60.728 55.000 11.77 0.00 41.24 2.90
3950 7702 1.576920 CAACGCACGGGCATTTGTA 59.423 52.632 11.77 0.00 41.24 2.41
3951 7703 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
3952 7704 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
3953 7705 3.600694 TGCAACGCACGGGCATTT 61.601 55.556 11.77 0.00 41.24 2.32
3968 7720 1.515487 CCCTTTTATTGCCCGGTGC 59.485 57.895 0.00 4.04 41.77 5.01
3970 7722 1.684391 GCCCCTTTTATTGCCCGGT 60.684 57.895 0.00 0.00 0.00 5.28
3971 7723 1.684049 TGCCCCTTTTATTGCCCGG 60.684 57.895 0.00 0.00 0.00 5.73
3972 7724 1.254284 TGTGCCCCTTTTATTGCCCG 61.254 55.000 0.00 0.00 0.00 6.13
3973 7725 0.536724 CTGTGCCCCTTTTATTGCCC 59.463 55.000 0.00 0.00 0.00 5.36
3974 7726 0.108186 GCTGTGCCCCTTTTATTGCC 60.108 55.000 0.00 0.00 0.00 4.52
3975 7727 0.108186 GGCTGTGCCCCTTTTATTGC 60.108 55.000 0.00 0.00 44.06 3.56
3988 7740 1.211969 GCACATGAAGCAGGCTGTG 59.788 57.895 17.16 8.44 41.44 3.66
3989 7741 0.325933 TAGCACATGAAGCAGGCTGT 59.674 50.000 17.16 0.00 36.10 4.40
3990 7742 1.676746 ATAGCACATGAAGCAGGCTG 58.323 50.000 10.94 10.94 36.10 4.85
3993 7745 3.184541 GCAAAATAGCACATGAAGCAGG 58.815 45.455 15.23 0.00 0.00 4.85
3994 7746 3.840468 TGCAAAATAGCACATGAAGCAG 58.160 40.909 15.23 2.20 40.11 4.24
3995 7747 3.938289 TGCAAAATAGCACATGAAGCA 57.062 38.095 15.23 0.00 40.11 3.91
4036 7788 7.908082 CGTTCACCATTATTATCGACATTTGTT 59.092 33.333 0.00 0.00 0.00 2.83
4037 7789 7.065324 ACGTTCACCATTATTATCGACATTTGT 59.935 33.333 0.00 0.00 0.00 2.83
4038 7790 7.373180 CACGTTCACCATTATTATCGACATTTG 59.627 37.037 0.00 0.00 0.00 2.32
4040 7792 6.537301 ACACGTTCACCATTATTATCGACATT 59.463 34.615 0.00 0.00 0.00 2.71
4041 7793 6.046593 ACACGTTCACCATTATTATCGACAT 58.953 36.000 0.00 0.00 0.00 3.06
4042 7794 5.412640 ACACGTTCACCATTATTATCGACA 58.587 37.500 0.00 0.00 0.00 4.35
4043 7795 5.961395 ACACGTTCACCATTATTATCGAC 57.039 39.130 0.00 0.00 0.00 4.20
4044 7796 8.651391 ATTTACACGTTCACCATTATTATCGA 57.349 30.769 0.00 0.00 0.00 3.59
4045 7797 9.710979 AAATTTACACGTTCACCATTATTATCG 57.289 29.630 0.00 0.00 0.00 2.92
4048 7800 9.233649 AGGAAATTTACACGTTCACCATTATTA 57.766 29.630 2.58 0.00 0.00 0.98
4051 7803 7.513371 AAGGAAATTTACACGTTCACCATTA 57.487 32.000 2.58 0.00 0.00 1.90
4052 7804 6.399639 AAGGAAATTTACACGTTCACCATT 57.600 33.333 2.58 0.00 0.00 3.16
4053 7805 7.696992 ATAAGGAAATTTACACGTTCACCAT 57.303 32.000 2.58 0.00 0.00 3.55
4054 7806 7.513371 AATAAGGAAATTTACACGTTCACCA 57.487 32.000 2.58 0.00 0.00 4.17
4055 7807 8.806177 AAAATAAGGAAATTTACACGTTCACC 57.194 30.769 2.58 0.00 0.00 4.02
4092 8134 9.525826 AAGGTGTTAGATTTTCAATGAAGAGAT 57.474 29.630 0.00 0.00 0.00 2.75
4093 8135 8.924511 AAGGTGTTAGATTTTCAATGAAGAGA 57.075 30.769 0.00 0.00 0.00 3.10
4094 8136 9.971922 AAAAGGTGTTAGATTTTCAATGAAGAG 57.028 29.630 0.00 0.00 0.00 2.85
4096 8138 9.748708 TCAAAAGGTGTTAGATTTTCAATGAAG 57.251 29.630 0.00 0.00 0.00 3.02
4098 8140 9.695526 CATCAAAAGGTGTTAGATTTTCAATGA 57.304 29.630 0.00 0.00 0.00 2.57
4099 8141 9.695526 TCATCAAAAGGTGTTAGATTTTCAATG 57.304 29.630 0.00 0.00 0.00 2.82
4607 8649 9.539825 TGTACGTTAACTATTTTGTTTGGAGTA 57.460 29.630 3.71 0.00 0.00 2.59
4609 8651 8.336806 TGTGTACGTTAACTATTTTGTTTGGAG 58.663 33.333 3.71 0.00 0.00 3.86
4610 8652 8.206325 TGTGTACGTTAACTATTTTGTTTGGA 57.794 30.769 3.71 0.00 0.00 3.53
4611 8653 7.112426 GCTGTGTACGTTAACTATTTTGTTTGG 59.888 37.037 3.71 0.00 0.00 3.28
4612 8654 7.640630 TGCTGTGTACGTTAACTATTTTGTTTG 59.359 33.333 3.71 0.00 0.00 2.93
4613 8655 7.695820 TGCTGTGTACGTTAACTATTTTGTTT 58.304 30.769 3.71 0.00 0.00 2.83
4616 8658 6.146510 TCCTGCTGTGTACGTTAACTATTTTG 59.853 38.462 3.71 0.00 0.00 2.44
4617 8659 6.146673 GTCCTGCTGTGTACGTTAACTATTTT 59.853 38.462 3.71 0.00 0.00 1.82
4619 8661 5.166398 GTCCTGCTGTGTACGTTAACTATT 58.834 41.667 3.71 0.00 0.00 1.73
4621 8663 3.057315 GGTCCTGCTGTGTACGTTAACTA 60.057 47.826 3.71 0.00 0.00 2.24
4623 8665 2.064014 GGTCCTGCTGTGTACGTTAAC 58.936 52.381 0.00 0.00 0.00 2.01
4624 8666 1.001181 GGGTCCTGCTGTGTACGTTAA 59.999 52.381 0.00 0.00 0.00 2.01
4625 8667 0.604578 GGGTCCTGCTGTGTACGTTA 59.395 55.000 0.00 0.00 0.00 3.18
4626 8668 1.370064 GGGTCCTGCTGTGTACGTT 59.630 57.895 0.00 0.00 0.00 3.99
4628 8670 1.374252 GTGGGTCCTGCTGTGTACG 60.374 63.158 0.00 0.00 0.00 3.67
4629 8671 1.374252 CGTGGGTCCTGCTGTGTAC 60.374 63.158 0.00 0.00 0.00 2.90
4630 8672 1.116536 TTCGTGGGTCCTGCTGTGTA 61.117 55.000 0.00 0.00 0.00 2.90
4632 8674 1.961277 GTTCGTGGGTCCTGCTGTG 60.961 63.158 0.00 0.00 0.00 3.66
4636 8678 1.296715 ATGAGTTCGTGGGTCCTGC 59.703 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.