Multiple sequence alignment - TraesCS1B01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G307900 chr1B 100.000 4070 0 0 1 4070 530661221 530657152 0.000000e+00 7516.0
1 TraesCS1B01G307900 chr1B 88.449 909 95 8 2713 3617 530666932 530666030 0.000000e+00 1088.0
2 TraesCS1B01G307900 chr1B 85.056 629 80 10 1606 2228 530668401 530667781 2.670000e-176 628.0
3 TraesCS1B01G307900 chr1B 78.667 300 37 15 924 1222 530668861 530668588 1.500000e-39 174.0
4 TraesCS1B01G307900 chr1B 80.588 170 23 7 1262 1428 530668587 530668425 5.520000e-24 122.0
5 TraesCS1B01G307900 chr1D 94.063 2493 106 22 1590 4070 392019464 392021926 0.000000e+00 3746.0
6 TraesCS1B01G307900 chr1D 90.281 926 77 9 2694 3614 391984887 391985804 0.000000e+00 1199.0
7 TraesCS1B01G307900 chr1D 88.627 932 61 22 514 1430 392018564 392019465 0.000000e+00 1092.0
8 TraesCS1B01G307900 chr1D 83.760 782 81 28 648 1428 391968845 391969581 0.000000e+00 699.0
9 TraesCS1B01G307900 chr1D 84.652 417 50 8 1804 2216 391969926 391970332 1.760000e-108 403.0
10 TraesCS1B01G307900 chr1D 87.580 314 32 2 276 582 392018172 392018485 1.390000e-94 357.0
11 TraesCS1B01G307900 chr1D 86.667 210 18 7 1607 1810 391969606 391969811 1.470000e-54 224.0
12 TraesCS1B01G307900 chr1D 96.774 62 2 0 2224 2285 14986891 14986830 2.000000e-18 104.0
13 TraesCS1B01G307900 chr1D 83.750 80 2 4 3 71 392018021 392018100 9.440000e-07 65.8
14 TraesCS1B01G307900 chr1A 85.418 1303 135 18 2713 3987 493281365 493280090 0.000000e+00 1303.0
15 TraesCS1B01G307900 chr1A 94.880 664 26 4 1590 2247 493273893 493273232 0.000000e+00 1031.0
16 TraesCS1B01G307900 chr1A 91.598 488 26 9 2694 3172 493272079 493271598 0.000000e+00 660.0
17 TraesCS1B01G307900 chr1A 84.786 631 82 10 1607 2228 493282861 493282236 4.470000e-174 621.0
18 TraesCS1B01G307900 chr1A 94.828 348 16 2 3723 4070 493271167 493270822 3.580000e-150 542.0
19 TraesCS1B01G307900 chr1A 82.857 665 55 27 566 1227 493284560 493283952 3.580000e-150 542.0
20 TraesCS1B01G307900 chr1A 91.029 379 17 8 2239 2603 493273077 493272702 2.830000e-136 496.0
21 TraesCS1B01G307900 chr1A 93.827 324 18 1 1105 1428 493274225 493273904 1.700000e-133 486.0
22 TraesCS1B01G307900 chr1A 95.539 269 9 2 3436 3704 493271600 493271335 1.050000e-115 427.0
23 TraesCS1B01G307900 chr1A 85.657 251 11 13 810 1060 493279688 493279463 1.460000e-59 241.0
24 TraesCS1B01G307900 chr1A 84.768 151 19 4 1262 1409 493283956 493283807 9.110000e-32 148.0
25 TraesCS1B01G307900 chr2B 95.699 186 6 2 50 235 719520685 719520502 8.550000e-77 298.0
26 TraesCS1B01G307900 chr2B 96.386 166 6 0 1426 1591 93762337 93762502 1.440000e-69 274.0
27 TraesCS1B01G307900 chr2B 91.710 193 12 3 1429 1618 683308693 683308502 8.670000e-67 265.0
28 TraesCS1B01G307900 chr4D 96.648 179 4 2 62 240 75782222 75782046 3.080000e-76 296.0
29 TraesCS1B01G307900 chr4D 95.187 187 6 3 47 232 477898775 477898959 3.980000e-75 292.0
30 TraesCS1B01G307900 chr4D 97.110 173 4 1 60 232 238640336 238640165 1.430000e-74 291.0
31 TraesCS1B01G307900 chr4D 89.231 65 5 2 594 657 396411216 396411279 3.370000e-11 80.5
32 TraesCS1B01G307900 chr4B 97.110 173 5 0 65 237 488893119 488893291 3.980000e-75 292.0
33 TraesCS1B01G307900 chr4B 97.006 167 5 0 1426 1592 510313223 510313389 8.610000e-72 281.0
34 TraesCS1B01G307900 chr4B 91.371 197 14 3 65 258 284234578 284234382 2.410000e-67 267.0
35 TraesCS1B01G307900 chr7D 96.045 177 7 0 64 240 381458556 381458380 5.150000e-74 289.0
36 TraesCS1B01G307900 chr7D 87.097 155 7 4 2225 2366 35603161 35603315 3.260000e-36 163.0
37 TraesCS1B01G307900 chr5A 95.580 181 7 1 65 245 115664847 115664668 5.150000e-74 289.0
38 TraesCS1B01G307900 chr5B 93.717 191 9 3 63 251 575812973 575812784 2.390000e-72 283.0
39 TraesCS1B01G307900 chr5B 96.933 163 5 0 1429 1591 640759351 640759189 1.440000e-69 274.0
40 TraesCS1B01G307900 chr3A 97.576 165 4 0 1429 1593 731100877 731100713 2.390000e-72 283.0
41 TraesCS1B01G307900 chr3A 86.567 134 7 3 2215 2337 80090466 80090599 1.970000e-28 137.0
42 TraesCS1B01G307900 chr6B 97.546 163 4 0 1429 1591 468734817 468734655 3.100000e-71 279.0
43 TraesCS1B01G307900 chr6B 96.364 165 6 0 1429 1593 229680946 229680782 5.180000e-69 272.0
44 TraesCS1B01G307900 chr4A 96.970 165 5 0 1428 1592 743957167 743957331 1.110000e-70 278.0
45 TraesCS1B01G307900 chr4A 86.992 123 5 3 2225 2336 688093051 688092929 1.190000e-25 128.0
46 TraesCS1B01G307900 chr3B 94.220 173 10 0 1421 1593 592595319 592595491 8.670000e-67 265.0
47 TraesCS1B01G307900 chr3D 84.553 123 7 5 2226 2337 292035379 292035500 1.200000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G307900 chr1B 530657152 530661221 4069 True 7516.0 7516 100.000000 1 4070 1 chr1B.!!$R1 4069
1 TraesCS1B01G307900 chr1B 530666030 530668861 2831 True 503.0 1088 83.190000 924 3617 4 chr1B.!!$R2 2693
2 TraesCS1B01G307900 chr1D 392018021 392021926 3905 False 1315.2 3746 88.505000 3 4070 4 chr1D.!!$F3 4067
3 TraesCS1B01G307900 chr1D 391984887 391985804 917 False 1199.0 1199 90.281000 2694 3614 1 chr1D.!!$F1 920
4 TraesCS1B01G307900 chr1D 391968845 391970332 1487 False 442.0 699 85.026333 648 2216 3 chr1D.!!$F2 1568
5 TraesCS1B01G307900 chr1A 493270822 493274225 3403 True 607.0 1031 93.616833 1105 4070 6 chr1A.!!$R1 2965
6 TraesCS1B01G307900 chr1A 493279463 493284560 5097 True 571.0 1303 84.697200 566 3987 5 chr1A.!!$R2 3421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 856 0.033504 ACAACAACCATCGAGCGAGT 59.966 50.0 0.00 0.0 0.00 4.18 F
1067 1287 0.036765 AACGGCGGTGAGATTTGCTA 60.037 50.0 13.24 0.0 0.00 3.49 F
2262 3748 0.108138 AAGCGACCTAAAGCGAGCAT 60.108 50.0 0.00 0.0 38.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 3310 0.248215 GCATCATTTCTGGTTCGGCG 60.248 55.0 0.0 0.0 0.0 6.46 R
3004 5208 0.325933 CCCATCTCCTGTTCTGTGCA 59.674 55.0 0.0 0.0 0.0 4.57 R
3775 6166 0.040067 CAGGTGAGGCTTTTCGTTGC 60.040 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.258051 TCCTAACAAAATTAAGCCGTCCAT 58.742 37.500 0.00 0.00 0.00 3.41
32 33 5.124776 CCTAACAAAATTAAGCCGTCCATGA 59.875 40.000 0.00 0.00 0.00 3.07
35 36 5.650543 ACAAAATTAAGCCGTCCATGATTC 58.349 37.500 0.00 0.00 0.00 2.52
60 72 9.881649 TCCATTCTGATGTAATTCTATATGCTC 57.118 33.333 0.00 0.00 0.00 4.26
67 79 9.271921 TGATGTAATTCTATATGCTCCCATACT 57.728 33.333 0.00 0.00 36.79 2.12
70 82 9.769677 TGTAATTCTATATGCTCCCATACTACT 57.230 33.333 0.00 0.00 36.79 2.57
72 84 7.906199 ATTCTATATGCTCCCATACTACTCC 57.094 40.000 0.00 0.00 36.79 3.85
73 85 5.767670 TCTATATGCTCCCATACTACTCCC 58.232 45.833 0.00 0.00 36.79 4.30
74 86 4.701333 ATATGCTCCCATACTACTCCCT 57.299 45.455 0.00 0.00 36.79 4.20
75 87 2.383442 TGCTCCCATACTACTCCCTC 57.617 55.000 0.00 0.00 0.00 4.30
76 88 1.133136 TGCTCCCATACTACTCCCTCC 60.133 57.143 0.00 0.00 0.00 4.30
77 89 1.912417 CTCCCATACTACTCCCTCCG 58.088 60.000 0.00 0.00 0.00 4.63
78 90 1.145325 CTCCCATACTACTCCCTCCGT 59.855 57.143 0.00 0.00 0.00 4.69
79 91 1.572415 TCCCATACTACTCCCTCCGTT 59.428 52.381 0.00 0.00 0.00 4.44
80 92 1.962100 CCCATACTACTCCCTCCGTTC 59.038 57.143 0.00 0.00 0.00 3.95
81 93 1.962100 CCATACTACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
82 94 2.424523 CCATACTACTCCCTCCGTTCCT 60.425 54.545 0.00 0.00 0.00 3.36
83 95 3.181436 CCATACTACTCCCTCCGTTCCTA 60.181 52.174 0.00 0.00 0.00 2.94
84 96 4.467769 CATACTACTCCCTCCGTTCCTAA 58.532 47.826 0.00 0.00 0.00 2.69
85 97 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
86 98 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
87 99 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
88 100 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
89 101 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
90 102 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
91 103 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
92 104 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
93 105 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
94 106 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
95 107 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
96 108 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
97 109 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
98 110 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
99 111 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
100 112 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
101 113 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
114 126 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
125 137 9.355215 AGAGATTTCAACAAGTAACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
126 138 8.475331 AGATTTCAACAAGTAACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
127 139 8.308931 AGATTTCAACAAGTAACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
128 140 7.878477 TTTCAACAAGTAACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
129 141 5.404946 TCAACAAGTAACTACATACGGAGC 58.595 41.667 0.00 0.00 0.00 4.70
130 142 5.047872 TCAACAAGTAACTACATACGGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
131 143 5.395682 ACAAGTAACTACATACGGAGCAA 57.604 39.130 0.00 0.00 0.00 3.91
132 144 5.786311 ACAAGTAACTACATACGGAGCAAA 58.214 37.500 0.00 0.00 0.00 3.68
133 145 6.225318 ACAAGTAACTACATACGGAGCAAAA 58.775 36.000 0.00 0.00 0.00 2.44
134 146 6.877322 ACAAGTAACTACATACGGAGCAAAAT 59.123 34.615 0.00 0.00 0.00 1.82
135 147 6.903883 AGTAACTACATACGGAGCAAAATG 57.096 37.500 0.00 0.00 0.00 2.32
136 148 6.636705 AGTAACTACATACGGAGCAAAATGA 58.363 36.000 0.00 0.00 0.00 2.57
137 149 6.757010 AGTAACTACATACGGAGCAAAATGAG 59.243 38.462 0.00 0.00 0.00 2.90
138 150 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
139 151 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
140 152 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
141 153 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
142 154 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
143 155 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
144 156 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
145 157 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
146 158 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
147 159 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
148 160 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
181 193 9.865321 GTATGTTTATATACATCCGTATGTGGT 57.135 33.333 11.50 0.00 45.99 4.16
184 196 9.081204 TGTTTATATACATCCGTATGTGGTAGT 57.919 33.333 3.56 0.00 45.99 2.73
185 197 9.565213 GTTTATATACATCCGTATGTGGTAGTC 57.435 37.037 3.56 0.00 45.99 2.59
186 198 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
187 199 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
188 200 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
189 201 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
190 202 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
191 203 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
192 204 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
193 205 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
194 206 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
195 207 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
196 208 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
197 209 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
198 210 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
199 211 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
200 212 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
201 213 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
202 214 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
203 215 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
204 216 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
208 220 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
209 221 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
226 238 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
227 239 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
228 240 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
229 241 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
287 299 5.528043 TTGCTTTGACCATACACATGTTT 57.472 34.783 0.00 0.00 0.00 2.83
320 364 4.582701 TCACCAAACATACCTTTGCTTG 57.417 40.909 0.00 0.00 30.87 4.01
325 369 4.864247 CCAAACATACCTTTGCTTGTATGC 59.136 41.667 9.01 0.00 45.20 3.14
338 382 3.564511 CTTGTATGCTTCCAACCAAACG 58.435 45.455 0.00 0.00 0.00 3.60
346 390 4.142138 TGCTTCCAACCAAACGTGTTATTT 60.142 37.500 0.00 0.00 0.00 1.40
355 399 6.037726 ACCAAACGTGTTATTTCCTTCAAAC 58.962 36.000 0.00 0.00 0.00 2.93
357 401 6.198216 CCAAACGTGTTATTTCCTTCAAACAG 59.802 38.462 0.00 0.00 32.83 3.16
379 429 5.694910 CAGAATCATGTTTTTGCTTGAAGCT 59.305 36.000 18.94 0.00 42.97 3.74
426 476 6.920758 TGTTTTGGTGAACTTATGTATGCAAC 59.079 34.615 0.00 0.00 0.00 4.17
427 477 6.641169 TTTGGTGAACTTATGTATGCAACA 57.359 33.333 0.00 0.00 43.86 3.33
437 487 7.075741 ACTTATGTATGCAACAGTTTTTCGTC 58.924 34.615 0.00 0.00 42.70 4.20
493 543 4.586841 TCCCGGTGAACATCTTTCAAATTT 59.413 37.500 0.00 0.00 0.00 1.82
548 746 2.823984 TGGACTTTTTCTAACGTGCGA 58.176 42.857 0.00 0.00 28.30 5.10
602 802 6.480524 TCAATATTTGAGAAGTCAACGGTG 57.519 37.500 0.00 0.00 42.60 4.94
622 822 0.261696 AGTGGTCAAAGCCAAAGGGT 59.738 50.000 0.00 0.00 40.68 4.34
654 856 0.033504 ACAACAACCATCGAGCGAGT 59.966 50.000 0.00 0.00 0.00 4.18
771 973 2.467566 TAGGACCTCTCGCAAAAACC 57.532 50.000 0.00 0.00 0.00 3.27
784 986 1.939934 CAAAAACCAGTCTCACGCTCA 59.060 47.619 0.00 0.00 0.00 4.26
793 995 4.103103 TCACGCTCAGACGCTCCG 62.103 66.667 0.00 0.00 36.19 4.63
803 1005 1.136984 GACGCTCCGATGACGAACT 59.863 57.895 0.00 0.00 42.66 3.01
809 1011 2.464865 CTCCGATGACGAACTGAATCC 58.535 52.381 0.00 0.00 42.66 3.01
810 1012 1.136305 TCCGATGACGAACTGAATCCC 59.864 52.381 0.00 0.00 42.66 3.85
836 1038 3.395702 CCGAACCCGATCCCCACA 61.396 66.667 0.00 0.00 38.22 4.17
860 1080 2.464459 CCGCCAACAGAATCCTCGC 61.464 63.158 0.00 0.00 0.00 5.03
861 1081 2.802667 CGCCAACAGAATCCTCGCG 61.803 63.158 0.00 0.00 0.00 5.87
862 1082 1.741770 GCCAACAGAATCCTCGCGT 60.742 57.895 5.77 0.00 0.00 6.01
863 1083 1.970917 GCCAACAGAATCCTCGCGTG 61.971 60.000 5.77 2.75 0.00 5.34
864 1084 1.361668 CCAACAGAATCCTCGCGTGG 61.362 60.000 20.92 20.92 0.00 4.94
865 1085 1.741770 AACAGAATCCTCGCGTGGC 60.742 57.895 22.04 8.67 0.00 5.01
1060 1280 1.006571 GTCAAGAACGGCGGTGAGA 60.007 57.895 13.24 0.00 0.00 3.27
1061 1281 0.389948 GTCAAGAACGGCGGTGAGAT 60.390 55.000 13.24 0.00 0.00 2.75
1063 1283 1.156736 CAAGAACGGCGGTGAGATTT 58.843 50.000 13.24 0.00 0.00 2.17
1064 1284 1.135972 CAAGAACGGCGGTGAGATTTG 60.136 52.381 13.24 0.04 0.00 2.32
1066 1286 1.298859 GAACGGCGGTGAGATTTGCT 61.299 55.000 13.24 0.00 0.00 3.91
1067 1287 0.036765 AACGGCGGTGAGATTTGCTA 60.037 50.000 13.24 0.00 0.00 3.49
1068 1288 0.739813 ACGGCGGTGAGATTTGCTAC 60.740 55.000 13.24 0.00 0.00 3.58
1069 1289 0.460284 CGGCGGTGAGATTTGCTACT 60.460 55.000 0.00 0.00 0.00 2.57
1070 1290 1.739067 GGCGGTGAGATTTGCTACTT 58.261 50.000 0.00 0.00 0.00 2.24
1071 1291 1.398390 GGCGGTGAGATTTGCTACTTG 59.602 52.381 0.00 0.00 0.00 3.16
1072 1292 2.346803 GCGGTGAGATTTGCTACTTGA 58.653 47.619 0.00 0.00 0.00 3.02
1073 1293 2.939103 GCGGTGAGATTTGCTACTTGAT 59.061 45.455 0.00 0.00 0.00 2.57
1074 1294 3.001736 GCGGTGAGATTTGCTACTTGATC 59.998 47.826 0.00 0.00 0.00 2.92
1075 1295 3.243877 CGGTGAGATTTGCTACTTGATCG 59.756 47.826 0.00 0.00 0.00 3.69
1076 1296 4.433615 GGTGAGATTTGCTACTTGATCGA 58.566 43.478 0.00 0.00 0.00 3.59
1077 1297 5.053145 GGTGAGATTTGCTACTTGATCGAT 58.947 41.667 0.00 0.00 0.00 3.59
1078 1298 5.525378 GGTGAGATTTGCTACTTGATCGATT 59.475 40.000 0.00 0.00 0.00 3.34
1079 1299 6.037610 GGTGAGATTTGCTACTTGATCGATTT 59.962 38.462 0.00 0.00 0.00 2.17
1080 1300 6.904011 GTGAGATTTGCTACTTGATCGATTTG 59.096 38.462 0.00 0.00 0.00 2.32
1081 1301 5.814783 AGATTTGCTACTTGATCGATTTGC 58.185 37.500 0.00 0.00 0.00 3.68
1082 1302 3.656651 TTGCTACTTGATCGATTTGCG 57.343 42.857 0.00 0.00 42.69 4.85
1083 1303 1.327460 TGCTACTTGATCGATTTGCGC 59.673 47.619 0.00 0.00 40.61 6.09
1084 1304 1.333258 GCTACTTGATCGATTTGCGCC 60.333 52.381 4.18 0.00 40.61 6.53
1085 1305 1.933181 CTACTTGATCGATTTGCGCCA 59.067 47.619 4.18 0.00 40.61 5.69
1086 1306 1.164411 ACTTGATCGATTTGCGCCAA 58.836 45.000 4.18 0.00 40.61 4.52
1087 1307 1.135689 ACTTGATCGATTTGCGCCAAC 60.136 47.619 4.18 0.00 40.61 3.77
1088 1308 1.131126 CTTGATCGATTTGCGCCAACT 59.869 47.619 4.18 0.00 40.61 3.16
1089 1309 2.017138 TGATCGATTTGCGCCAACTA 57.983 45.000 4.18 0.00 40.61 2.24
1095 1315 0.168128 ATTTGCGCCAACTAGTTCGC 59.832 50.000 26.22 26.22 46.78 4.70
1129 1360 2.351455 TGATCGATTTGCGCCAACTAA 58.649 42.857 4.18 0.00 40.61 2.24
1159 1390 8.404000 AGATCACGTACCAATTACTAGTACTTG 58.596 37.037 20.56 20.56 37.50 3.16
1160 1391 7.452880 TCACGTACCAATTACTAGTACTTGT 57.547 36.000 23.68 14.36 37.45 3.16
1242 1473 0.745845 AGATCATTGTGCCGTCAGCC 60.746 55.000 0.00 0.00 42.71 4.85
1356 1626 3.879295 CGATTATGTTGTGCAGGAGGATT 59.121 43.478 0.00 0.00 0.00 3.01
1404 1674 2.827921 GAGACAAATTGCCCAGGTGATT 59.172 45.455 0.00 0.00 0.00 2.57
1406 1676 2.827921 GACAAATTGCCCAGGTGATTCT 59.172 45.455 0.00 0.00 0.00 2.40
1407 1677 3.242011 ACAAATTGCCCAGGTGATTCTT 58.758 40.909 0.00 0.00 0.00 2.52
1430 2614 6.847421 TTTTCTCTTCCCACTACTACCTAC 57.153 41.667 0.00 0.00 0.00 3.18
1431 2615 5.793034 TTCTCTTCCCACTACTACCTACT 57.207 43.478 0.00 0.00 0.00 2.57
1432 2616 5.370875 TCTCTTCCCACTACTACCTACTC 57.629 47.826 0.00 0.00 0.00 2.59
1433 2617 4.165758 TCTCTTCCCACTACTACCTACTCC 59.834 50.000 0.00 0.00 0.00 3.85
1434 2618 3.203934 TCTTCCCACTACTACCTACTCCC 59.796 52.174 0.00 0.00 0.00 4.30
1435 2619 2.869152 TCCCACTACTACCTACTCCCT 58.131 52.381 0.00 0.00 0.00 4.20
1436 2620 2.782341 TCCCACTACTACCTACTCCCTC 59.218 54.545 0.00 0.00 0.00 4.30
1437 2621 2.784682 CCCACTACTACCTACTCCCTCT 59.215 54.545 0.00 0.00 0.00 3.69
1438 2622 3.435313 CCCACTACTACCTACTCCCTCTG 60.435 56.522 0.00 0.00 0.00 3.35
1439 2623 3.202595 CCACTACTACCTACTCCCTCTGT 59.797 52.174 0.00 0.00 0.00 3.41
1440 2624 4.325187 CCACTACTACCTACTCCCTCTGTT 60.325 50.000 0.00 0.00 0.00 3.16
1441 2625 5.262804 CACTACTACCTACTCCCTCTGTTT 58.737 45.833 0.00 0.00 0.00 2.83
1442 2626 5.357596 CACTACTACCTACTCCCTCTGTTTC 59.642 48.000 0.00 0.00 0.00 2.78
1443 2627 4.678538 ACTACCTACTCCCTCTGTTTCT 57.321 45.455 0.00 0.00 0.00 2.52
1444 2628 5.793034 ACTACCTACTCCCTCTGTTTCTA 57.207 43.478 0.00 0.00 0.00 2.10
1445 2629 6.150034 ACTACCTACTCCCTCTGTTTCTAA 57.850 41.667 0.00 0.00 0.00 2.10
1446 2630 6.559429 ACTACCTACTCCCTCTGTTTCTAAA 58.441 40.000 0.00 0.00 0.00 1.85
1447 2631 7.190501 ACTACCTACTCCCTCTGTTTCTAAAT 58.809 38.462 0.00 0.00 0.00 1.40
1448 2632 8.342270 ACTACCTACTCCCTCTGTTTCTAAATA 58.658 37.037 0.00 0.00 0.00 1.40
1449 2633 9.369672 CTACCTACTCCCTCTGTTTCTAAATAT 57.630 37.037 0.00 0.00 0.00 1.28
1451 2635 9.725206 ACCTACTCCCTCTGTTTCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
1455 2639 9.495382 ACTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
1475 2659 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
1476 2660 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
1477 2661 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
1478 2662 8.254508 GTCTTTGTAGAGATTCCACTATGAACT 58.745 37.037 0.00 0.00 0.00 3.01
1479 2663 9.475620 TCTTTGTAGAGATTCCACTATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
1480 2664 9.743057 CTTTGTAGAGATTCCACTATGAACTAG 57.257 37.037 0.00 0.00 0.00 2.57
1481 2665 9.475620 TTTGTAGAGATTCCACTATGAACTAGA 57.524 33.333 0.00 0.00 0.00 2.43
1482 2666 9.647918 TTGTAGAGATTCCACTATGAACTAGAT 57.352 33.333 0.00 0.00 0.00 1.98
1485 2669 8.330466 AGAGATTCCACTATGAACTAGATACG 57.670 38.462 0.00 0.00 0.00 3.06
1486 2670 7.392113 AGAGATTCCACTATGAACTAGATACGG 59.608 40.741 0.00 0.00 0.00 4.02
1487 2671 7.232188 AGATTCCACTATGAACTAGATACGGA 58.768 38.462 0.00 0.00 0.00 4.69
1488 2672 7.891183 AGATTCCACTATGAACTAGATACGGAT 59.109 37.037 0.00 0.00 0.00 4.18
1489 2673 6.819397 TCCACTATGAACTAGATACGGATG 57.181 41.667 0.00 0.00 0.00 3.51
1490 2674 6.304624 TCCACTATGAACTAGATACGGATGT 58.695 40.000 0.00 0.00 0.00 3.06
1491 2675 7.455891 TCCACTATGAACTAGATACGGATGTA 58.544 38.462 0.00 0.00 34.45 2.29
1492 2676 8.107729 TCCACTATGAACTAGATACGGATGTAT 58.892 37.037 0.00 0.00 43.97 2.29
1493 2677 9.392259 CCACTATGAACTAGATACGGATGTATA 57.608 37.037 0.00 0.00 41.37 1.47
1509 2693 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
1518 2702 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
1519 2703 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
1520 2704 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
1521 2705 7.977853 AGATGCATTTTAAGTGTGGATTCATTC 59.022 33.333 0.00 0.00 0.00 2.67
1522 2706 6.990798 TGCATTTTAAGTGTGGATTCATTCA 58.009 32.000 0.00 0.00 0.00 2.57
1523 2707 7.613585 TGCATTTTAAGTGTGGATTCATTCAT 58.386 30.769 0.00 0.00 0.00 2.57
1524 2708 8.095792 TGCATTTTAAGTGTGGATTCATTCATT 58.904 29.630 0.00 0.00 0.00 2.57
1525 2709 8.938906 GCATTTTAAGTGTGGATTCATTCATTT 58.061 29.630 0.00 0.00 0.00 2.32
1531 2715 7.396540 AGTGTGGATTCATTCATTTTACTCC 57.603 36.000 0.00 0.00 0.00 3.85
1532 2716 6.094048 AGTGTGGATTCATTCATTTTACTCCG 59.906 38.462 0.00 0.00 0.00 4.63
1533 2717 5.943416 TGTGGATTCATTCATTTTACTCCGT 59.057 36.000 0.00 0.00 0.00 4.69
1534 2718 7.065324 GTGTGGATTCATTCATTTTACTCCGTA 59.935 37.037 0.00 0.00 0.00 4.02
1535 2719 7.773224 TGTGGATTCATTCATTTTACTCCGTAT 59.227 33.333 0.00 0.00 0.00 3.06
1536 2720 8.070171 GTGGATTCATTCATTTTACTCCGTATG 58.930 37.037 0.00 0.00 0.00 2.39
1537 2721 7.773224 TGGATTCATTCATTTTACTCCGTATGT 59.227 33.333 0.00 0.00 0.00 2.29
1538 2722 9.268268 GGATTCATTCATTTTACTCCGTATGTA 57.732 33.333 0.00 0.00 0.00 2.29
1540 2724 9.832445 ATTCATTCATTTTACTCCGTATGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
1541 2725 8.867112 TCATTCATTTTACTCCGTATGTAGTC 57.133 34.615 0.00 0.00 0.00 2.59
1542 2726 7.924412 TCATTCATTTTACTCCGTATGTAGTCC 59.076 37.037 0.00 0.00 0.00 3.85
1543 2727 6.778834 TCATTTTACTCCGTATGTAGTCCA 57.221 37.500 0.00 0.00 0.00 4.02
1544 2728 6.567050 TCATTTTACTCCGTATGTAGTCCAC 58.433 40.000 0.00 0.00 0.00 4.02
1545 2729 4.989279 TTTACTCCGTATGTAGTCCACC 57.011 45.455 0.00 0.00 0.00 4.61
1546 2730 2.822707 ACTCCGTATGTAGTCCACCT 57.177 50.000 0.00 0.00 0.00 4.00
1547 2731 3.939740 ACTCCGTATGTAGTCCACCTA 57.060 47.619 0.00 0.00 0.00 3.08
1548 2732 3.818180 ACTCCGTATGTAGTCCACCTAG 58.182 50.000 0.00 0.00 0.00 3.02
1549 2733 3.201708 ACTCCGTATGTAGTCCACCTAGT 59.798 47.826 0.00 0.00 0.00 2.57
1550 2734 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
1562 2746 3.616956 CACCTAGTGGAATCTCTGCAA 57.383 47.619 0.00 0.00 37.04 4.08
1563 2747 3.942829 CACCTAGTGGAATCTCTGCAAA 58.057 45.455 0.00 0.00 37.04 3.68
1564 2748 3.937706 CACCTAGTGGAATCTCTGCAAAG 59.062 47.826 0.00 0.00 37.04 2.77
1565 2749 3.840666 ACCTAGTGGAATCTCTGCAAAGA 59.159 43.478 0.00 0.00 37.04 2.52
1566 2750 4.187694 CCTAGTGGAATCTCTGCAAAGAC 58.812 47.826 0.00 0.00 34.57 3.01
1567 2751 4.081198 CCTAGTGGAATCTCTGCAAAGACT 60.081 45.833 0.00 0.00 34.57 3.24
1568 2752 4.363991 AGTGGAATCTCTGCAAAGACTT 57.636 40.909 0.00 0.00 0.00 3.01
1569 2753 5.489792 AGTGGAATCTCTGCAAAGACTTA 57.510 39.130 0.00 0.00 0.00 2.24
1570 2754 5.241662 AGTGGAATCTCTGCAAAGACTTAC 58.758 41.667 0.00 0.00 0.00 2.34
1571 2755 4.997395 GTGGAATCTCTGCAAAGACTTACA 59.003 41.667 0.00 0.00 0.00 2.41
1572 2756 5.645497 GTGGAATCTCTGCAAAGACTTACAT 59.355 40.000 0.00 0.00 0.00 2.29
1573 2757 6.150140 GTGGAATCTCTGCAAAGACTTACATT 59.850 38.462 0.00 0.00 0.00 2.71
1574 2758 6.716628 TGGAATCTCTGCAAAGACTTACATTT 59.283 34.615 0.00 0.00 0.00 2.32
1575 2759 7.882791 TGGAATCTCTGCAAAGACTTACATTTA 59.117 33.333 0.00 0.00 0.00 1.40
1576 2760 8.394121 GGAATCTCTGCAAAGACTTACATTTAG 58.606 37.037 0.00 0.00 0.00 1.85
1577 2761 7.856145 ATCTCTGCAAAGACTTACATTTAGG 57.144 36.000 0.00 0.00 0.00 2.69
1578 2762 7.004555 TCTCTGCAAAGACTTACATTTAGGA 57.995 36.000 0.00 0.00 0.00 2.94
1579 2763 7.450074 TCTCTGCAAAGACTTACATTTAGGAA 58.550 34.615 0.00 0.00 0.00 3.36
1580 2764 7.387948 TCTCTGCAAAGACTTACATTTAGGAAC 59.612 37.037 0.00 0.00 0.00 3.62
1581 2765 6.147164 TCTGCAAAGACTTACATTTAGGAACG 59.853 38.462 0.00 0.00 0.00 3.95
1582 2766 5.180492 TGCAAAGACTTACATTTAGGAACGG 59.820 40.000 0.00 0.00 0.00 4.44
1583 2767 5.410439 GCAAAGACTTACATTTAGGAACGGA 59.590 40.000 0.00 0.00 0.00 4.69
1584 2768 6.402226 GCAAAGACTTACATTTAGGAACGGAG 60.402 42.308 0.00 0.00 0.00 4.63
1585 2769 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1586 2770 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1587 2771 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1588 2772 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1589 2773 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
1590 2774 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
1624 2808 9.587772 ACAGTAATAGTACAGCTAATTTGACTG 57.412 33.333 2.81 8.78 37.45 3.51
1638 2826 0.328926 TGACTGCCATTGATGCTCCA 59.671 50.000 0.00 0.00 0.00 3.86
1786 2974 1.145819 GTGCTGATCTCCCTCCTGC 59.854 63.158 0.00 0.00 0.00 4.85
1912 3225 7.346175 TGATTCCAGGCTAGTAGTGGTATTAAA 59.654 37.037 6.69 0.00 32.73 1.52
1987 3310 4.451774 GCAGCTGATTCAGATCTTGGATAC 59.548 45.833 20.43 0.00 32.44 2.24
2066 3389 2.090210 TCCTATTCCTGCCCCATCAGTA 60.090 50.000 0.00 0.00 32.32 2.74
2256 3742 0.372679 GCGGTAAAGCGACCTAAAGC 59.627 55.000 5.64 0.00 37.34 3.51
2262 3748 0.108138 AAGCGACCTAAAGCGAGCAT 60.108 50.000 0.00 0.00 38.61 3.79
2306 3792 4.682787 GCTTAAAGCGGGCAAATTTCTAT 58.317 39.130 0.00 0.00 0.00 1.98
2337 3827 2.785258 CGCCTTGTCGCTTAAGCC 59.215 61.111 21.53 9.21 37.91 4.35
2349 3839 0.462759 CTTAAGCCTCTGAAGCGGGG 60.463 60.000 0.00 0.00 34.64 5.73
2378 3868 9.567848 CTTTATAAACAATGCTATTTGGTTCGT 57.432 29.630 0.00 0.00 37.65 3.85
2402 3893 8.235905 CGTAGGATTTTAAAAACACGGGAATAA 58.764 33.333 4.44 0.00 0.00 1.40
2513 4023 3.486841 CGCCACATGAAAAACACAAGAAG 59.513 43.478 0.00 0.00 0.00 2.85
2570 4126 2.605837 TGCATGCAAAATAGGCCATG 57.394 45.000 20.30 0.00 0.00 3.66
2578 4134 3.689161 GCAAAATAGGCCATGGGAAAAAC 59.311 43.478 15.13 0.00 0.00 2.43
2677 4833 0.749649 TTTCAAAGCCGTTGGTGCAT 59.250 45.000 0.00 0.00 37.85 3.96
2678 4834 1.610363 TTCAAAGCCGTTGGTGCATA 58.390 45.000 0.00 0.00 37.85 3.14
3004 5208 2.158842 GCATACCTTGAGCTGGATGTCT 60.159 50.000 0.00 0.00 0.00 3.41
3018 5222 2.344950 GATGTCTGCACAGAACAGGAG 58.655 52.381 1.05 0.00 39.48 3.69
3019 5223 1.413118 TGTCTGCACAGAACAGGAGA 58.587 50.000 1.05 0.00 39.48 3.71
3129 5341 0.898320 GGTCTCTGCAGAGGTTAGCA 59.102 55.000 36.92 18.63 42.30 3.49
3200 5412 6.343226 GAGATTGTTCTCTTCGATGGAAAG 57.657 41.667 0.00 0.00 44.29 2.62
3303 5515 4.981806 TCAGTTTTCCAGTGGACTTTTG 57.018 40.909 12.69 8.83 0.00 2.44
3417 5631 2.929592 GCCTAAGTCAACCGTCGTGATT 60.930 50.000 0.00 0.00 0.00 2.57
3460 5675 7.575414 TGCTAGAATGTTTGTGTTTTAGGAA 57.425 32.000 0.00 0.00 0.00 3.36
3513 5729 1.595093 CCCTCGTGACAAAATGGGCC 61.595 60.000 0.00 0.00 0.00 5.80
3536 5752 5.106442 CGAAGTTTGGGTTTTAGCTTTTGT 58.894 37.500 0.00 0.00 0.00 2.83
3592 5810 6.231258 AGTTTGAGATATGCATGACTCTGA 57.769 37.500 24.57 15.79 0.00 3.27
3657 5899 4.520492 CAGCTAGGAACCTGAAAATGTTGT 59.480 41.667 3.36 0.00 0.00 3.32
3658 5900 5.705441 CAGCTAGGAACCTGAAAATGTTGTA 59.295 40.000 3.36 0.00 0.00 2.41
3744 6135 0.654683 GTTCCAGTGCATCATCTCGC 59.345 55.000 0.00 0.00 0.00 5.03
3761 6152 5.188327 TCTCGCGATAATTCTGAAGTCAT 57.812 39.130 10.36 0.00 0.00 3.06
3764 6155 6.204882 TCTCGCGATAATTCTGAAGTCATCTA 59.795 38.462 10.36 0.00 0.00 1.98
3775 6166 2.834574 AGTCATCTACACTTCGAGCG 57.165 50.000 0.00 0.00 0.00 5.03
3778 6169 1.201414 TCATCTACACTTCGAGCGCAA 59.799 47.619 11.47 0.00 0.00 4.85
3789 6180 1.154395 GAGCGCAACGAAAAGCCTC 60.154 57.895 11.47 0.00 0.00 4.70
3917 6308 7.482654 TTGTTCTAGATCAGTGTTGTTTGAG 57.517 36.000 3.80 0.00 0.00 3.02
4007 6417 4.038271 TGAATCTTGATGGCTCCTTTGT 57.962 40.909 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.624861 CGGCTTAATTTTGTTAGGAAGCATGA 60.625 38.462 0.00 0.00 40.80 3.07
1 2 5.516339 CGGCTTAATTTTGTTAGGAAGCATG 59.484 40.000 6.74 0.00 40.80 4.06
35 36 9.107177 GGAGCATATAGAATTACATCAGAATGG 57.893 37.037 0.00 0.00 37.19 3.16
60 72 1.962100 GAACGGAGGGAGTAGTATGGG 59.038 57.143 0.00 0.00 0.00 4.00
67 79 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
68 80 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
69 81 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
70 82 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
71 83 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
72 84 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
73 85 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
74 86 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
75 87 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
88 100 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
89 101 8.964476 ACTTGTTGAAATCTCTAGAAAGACAA 57.036 30.769 0.00 0.00 0.00 3.18
99 111 9.355215 CGTATGTAGTTACTTGTTGAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
100 112 8.592998 CCGTATGTAGTTACTTGTTGAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
101 113 8.308931 TCCGTATGTAGTTACTTGTTGAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
102 114 8.470040 TCCGTATGTAGTTACTTGTTGAAATC 57.530 34.615 0.00 0.00 0.00 2.17
103 115 7.064253 GCTCCGTATGTAGTTACTTGTTGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
104 116 6.366877 GCTCCGTATGTAGTTACTTGTTGAAA 59.633 38.462 0.00 0.00 0.00 2.69
105 117 5.865552 GCTCCGTATGTAGTTACTTGTTGAA 59.134 40.000 0.00 0.00 0.00 2.69
106 118 5.047872 TGCTCCGTATGTAGTTACTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
107 119 5.165676 TGCTCCGTATGTAGTTACTTGTTG 58.834 41.667 0.00 0.00 0.00 3.33
108 120 5.395682 TGCTCCGTATGTAGTTACTTGTT 57.604 39.130 0.00 0.00 0.00 2.83
109 121 5.395682 TTGCTCCGTATGTAGTTACTTGT 57.604 39.130 0.00 0.00 0.00 3.16
110 122 6.715344 TTTTGCTCCGTATGTAGTTACTTG 57.285 37.500 0.00 0.00 0.00 3.16
111 123 7.101054 TCATTTTGCTCCGTATGTAGTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
112 124 6.636705 TCATTTTGCTCCGTATGTAGTTACT 58.363 36.000 0.00 0.00 0.00 2.24
113 125 6.534079 ACTCATTTTGCTCCGTATGTAGTTAC 59.466 38.462 0.00 0.00 0.00 2.50
114 126 6.533723 CACTCATTTTGCTCCGTATGTAGTTA 59.466 38.462 0.00 0.00 0.00 2.24
115 127 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
116 128 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
117 129 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
118 130 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
119 131 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
120 132 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
121 133 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
122 134 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
123 135 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
124 136 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
125 137 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
126 138 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
155 167 9.865321 ACCACATACGGATGTATATAAACATAC 57.135 33.333 14.23 0.00 44.82 2.39
158 170 9.081204 ACTACCACATACGGATGTATATAAACA 57.919 33.333 14.23 0.00 44.82 2.83
159 171 9.565213 GACTACCACATACGGATGTATATAAAC 57.435 37.037 14.23 0.00 44.82 2.01
160 172 8.742777 GGACTACCACATACGGATGTATATAAA 58.257 37.037 14.23 0.00 44.82 1.40
161 173 7.889600 TGGACTACCACATACGGATGTATATAA 59.110 37.037 14.23 0.00 44.82 0.98
162 174 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
163 175 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
164 176 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
165 177 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
166 178 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
182 194 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
183 195 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
200 212 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
201 213 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
202 214 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
203 215 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
204 216 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
205 217 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
206 218 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
207 219 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
208 220 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
209 221 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
210 222 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
211 223 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
212 224 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
213 225 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
214 226 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
215 227 3.463048 AAAGTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
216 228 2.322339 AAAGTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
217 229 5.859205 TTATAAAGTACTCCCTCCGTTCC 57.141 43.478 0.00 0.00 0.00 3.62
218 230 8.202811 AGAAATTATAAAGTACTCCCTCCGTTC 58.797 37.037 0.00 0.00 0.00 3.95
219 231 8.087303 AGAAATTATAAAGTACTCCCTCCGTT 57.913 34.615 0.00 0.00 0.00 4.44
220 232 7.672122 AGAAATTATAAAGTACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
221 233 8.422566 AGAAGAAATTATAAAGTACTCCCTCCG 58.577 37.037 0.00 0.00 0.00 4.63
265 277 5.528043 AAACATGTGTATGGTCAAAGCAA 57.472 34.783 0.00 0.00 38.66 3.91
266 278 5.508825 GGAAAACATGTGTATGGTCAAAGCA 60.509 40.000 0.00 0.00 38.66 3.91
320 364 2.292292 ACACGTTTGGTTGGAAGCATAC 59.708 45.455 0.00 3.05 36.16 2.39
325 369 4.979815 GGAAATAACACGTTTGGTTGGAAG 59.020 41.667 0.35 0.00 0.00 3.46
338 382 9.132521 CATGATTCTGTTTGAAGGAAATAACAC 57.867 33.333 0.00 0.00 38.18 3.32
346 390 6.479660 GCAAAAACATGATTCTGTTTGAAGGA 59.520 34.615 0.00 0.00 45.98 3.36
355 399 5.694910 AGCTTCAAGCAAAAACATGATTCTG 59.305 36.000 13.10 0.00 45.56 3.02
357 401 7.823149 ATAGCTTCAAGCAAAAACATGATTC 57.177 32.000 13.10 0.00 45.56 2.52
379 429 7.238486 ACATCAACCAAATTACCAGCAAATA 57.762 32.000 0.00 0.00 0.00 1.40
426 476 4.214980 ACATCAGCAAGACGAAAAACTG 57.785 40.909 0.00 0.00 0.00 3.16
427 477 5.297547 TCTACATCAGCAAGACGAAAAACT 58.702 37.500 0.00 0.00 0.00 2.66
437 487 4.151335 GCGGTCATTATCTACATCAGCAAG 59.849 45.833 0.00 0.00 0.00 4.01
523 721 5.516090 GCACGTTAGAAAAAGTCCATGAAA 58.484 37.500 0.00 0.00 0.00 2.69
530 728 6.727569 AAAAATCGCACGTTAGAAAAAGTC 57.272 33.333 0.00 0.00 0.00 3.01
557 755 8.560576 TTGAATTTGAAGAAGTTCACGAATTC 57.439 30.769 27.14 27.14 43.12 2.17
602 802 0.961753 CCCTTTGGCTTTGACCACTC 59.038 55.000 0.00 0.00 40.19 3.51
622 822 0.528033 TTGTTGTTTCGCTCGGTCGA 60.528 50.000 0.00 0.00 36.60 4.20
743 945 1.611519 GAGAGGTCCTATACAGCGCT 58.388 55.000 2.64 2.64 0.00 5.92
771 973 1.799519 GCGTCTGAGCGTGAGACTG 60.800 63.158 10.01 6.04 38.17 3.51
784 986 1.136984 GTTCGTCATCGGAGCGTCT 59.863 57.895 0.00 0.00 37.69 4.18
793 995 2.280628 GTGGGGATTCAGTTCGTCATC 58.719 52.381 0.00 0.00 0.00 2.92
803 1005 2.355986 CGGAGGACGTGGGGATTCA 61.356 63.158 0.00 0.00 37.93 2.57
809 1011 4.078516 GGGTTCGGAGGACGTGGG 62.079 72.222 0.00 0.00 44.69 4.61
810 1012 4.430765 CGGGTTCGGAGGACGTGG 62.431 72.222 0.00 0.00 44.69 4.94
861 1081 3.199891 GGTATTCGCCACGGCCAC 61.200 66.667 2.24 0.00 37.98 5.01
862 1082 3.379865 GAGGTATTCGCCACGGCCA 62.380 63.158 2.24 0.00 37.98 5.36
863 1083 2.588034 GAGGTATTCGCCACGGCC 60.588 66.667 1.63 0.00 37.98 6.13
864 1084 1.222115 GATGAGGTATTCGCCACGGC 61.222 60.000 0.00 0.00 37.85 5.68
865 1085 0.939577 CGATGAGGTATTCGCCACGG 60.940 60.000 0.00 0.00 0.00 4.94
895 1115 0.608035 GGTTTCCACCGATCCAAGCA 60.608 55.000 0.00 0.00 31.60 3.91
1007 1227 1.456518 TCCTCCTCCCGCAGATCAG 60.457 63.158 0.00 0.00 0.00 2.90
1060 1280 4.591202 CGCAAATCGATCAAGTAGCAAAT 58.409 39.130 0.00 0.00 41.67 2.32
1061 1281 3.727673 GCGCAAATCGATCAAGTAGCAAA 60.728 43.478 0.30 0.00 41.67 3.68
1063 1283 1.327460 GCGCAAATCGATCAAGTAGCA 59.673 47.619 0.30 0.00 41.67 3.49
1064 1284 1.333258 GGCGCAAATCGATCAAGTAGC 60.333 52.381 10.83 0.14 41.67 3.58
1066 1286 2.017138 TGGCGCAAATCGATCAAGTA 57.983 45.000 10.83 0.00 41.67 2.24
1067 1287 1.135689 GTTGGCGCAAATCGATCAAGT 60.136 47.619 10.83 0.00 41.67 3.16
1068 1288 1.131126 AGTTGGCGCAAATCGATCAAG 59.869 47.619 10.83 0.00 41.67 3.02
1069 1289 1.164411 AGTTGGCGCAAATCGATCAA 58.836 45.000 10.83 0.00 41.67 2.57
1070 1290 1.933181 CTAGTTGGCGCAAATCGATCA 59.067 47.619 10.83 0.00 41.67 2.92
1071 1291 1.933853 ACTAGTTGGCGCAAATCGATC 59.066 47.619 10.83 0.00 41.67 3.69
1072 1292 2.024176 ACTAGTTGGCGCAAATCGAT 57.976 45.000 10.83 0.00 41.67 3.59
1073 1293 1.730064 GAACTAGTTGGCGCAAATCGA 59.270 47.619 14.14 0.00 41.67 3.59
1074 1294 1.526986 CGAACTAGTTGGCGCAAATCG 60.527 52.381 14.14 6.38 42.12 3.34
1075 1295 2.159467 CGAACTAGTTGGCGCAAATC 57.841 50.000 14.14 0.00 0.00 2.17
1080 1300 0.179145 TAGAGCGAACTAGTTGGCGC 60.179 55.000 29.68 29.68 46.69 6.53
1081 1301 2.493713 ATAGAGCGAACTAGTTGGCG 57.506 50.000 29.38 20.72 46.69 5.69
1082 1302 3.675698 GCATATAGAGCGAACTAGTTGGC 59.324 47.826 29.01 29.01 43.31 4.52
1083 1303 5.127693 AGCATATAGAGCGAACTAGTTGG 57.872 43.478 14.14 13.41 37.01 3.77
1084 1304 6.904498 AGTAGCATATAGAGCGAACTAGTTG 58.096 40.000 14.14 6.76 33.39 3.16
1085 1305 7.228906 TCAAGTAGCATATAGAGCGAACTAGTT 59.771 37.037 8.13 8.13 33.82 2.24
1086 1306 6.711194 TCAAGTAGCATATAGAGCGAACTAGT 59.289 38.462 0.00 0.00 33.82 2.57
1087 1307 7.135089 TCAAGTAGCATATAGAGCGAACTAG 57.865 40.000 9.69 0.00 33.82 2.57
1088 1308 7.413109 CGATCAAGTAGCATATAGAGCGAACTA 60.413 40.741 0.00 0.00 37.09 2.24
1089 1309 6.582677 ATCAAGTAGCATATAGAGCGAACT 57.417 37.500 0.00 5.67 35.55 3.01
1095 1315 7.253585 CGCAAATCGATCAAGTAGCATATAGAG 60.254 40.741 0.00 0.00 41.67 2.43
1129 1360 8.008513 ACTAGTAATTGGTACGTGATCTTGAT 57.991 34.615 0.00 0.00 37.81 2.57
1176 1407 2.661866 ACGCTCAGTTCCACACGC 60.662 61.111 0.00 0.00 0.00 5.34
1242 1473 5.928264 TGTCATATTCAGATTCATAGTGGCG 59.072 40.000 0.00 0.00 0.00 5.69
1356 1626 2.287769 TGCAAGCTTAGCGCATTCATA 58.712 42.857 11.47 0.00 42.61 2.15
1378 1648 1.212751 GGGCAATTTGTCTCCACGC 59.787 57.895 0.36 0.00 0.00 5.34
1404 1674 6.082707 AGGTAGTAGTGGGAAGAGAAAAAGA 58.917 40.000 0.00 0.00 0.00 2.52
1406 1676 7.015064 AGTAGGTAGTAGTGGGAAGAGAAAAA 58.985 38.462 0.00 0.00 0.00 1.94
1407 1677 6.559429 AGTAGGTAGTAGTGGGAAGAGAAAA 58.441 40.000 0.00 0.00 0.00 2.29
1449 2633 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
1450 2634 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
1451 2635 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
1452 2636 8.254508 AGTTCATAGTGGAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 29.47 3.01
1453 2637 8.367660 AGTTCATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
1454 2638 9.743057 CTAGTTCATAGTGGAATCTCTACAAAG 57.257 37.037 0.00 0.00 29.47 2.77
1455 2639 9.475620 TCTAGTTCATAGTGGAATCTCTACAAA 57.524 33.333 0.00 0.00 29.47 2.83
1456 2640 9.647918 ATCTAGTTCATAGTGGAATCTCTACAA 57.352 33.333 0.00 0.00 29.47 2.41
1459 2643 9.438228 CGTATCTAGTTCATAGTGGAATCTCTA 57.562 37.037 0.00 0.00 32.85 2.43
1460 2644 7.392113 CCGTATCTAGTTCATAGTGGAATCTCT 59.608 40.741 0.00 0.00 32.85 3.10
1461 2645 7.390996 TCCGTATCTAGTTCATAGTGGAATCTC 59.609 40.741 0.00 0.00 32.85 2.75
1462 2646 7.232188 TCCGTATCTAGTTCATAGTGGAATCT 58.768 38.462 0.00 0.00 32.85 2.40
1463 2647 7.450124 TCCGTATCTAGTTCATAGTGGAATC 57.550 40.000 0.00 0.00 32.85 2.52
1464 2648 7.451877 ACATCCGTATCTAGTTCATAGTGGAAT 59.548 37.037 0.00 0.00 32.85 3.01
1465 2649 6.776116 ACATCCGTATCTAGTTCATAGTGGAA 59.224 38.462 0.00 0.00 32.85 3.53
1466 2650 6.304624 ACATCCGTATCTAGTTCATAGTGGA 58.695 40.000 0.00 0.00 32.85 4.02
1467 2651 6.576662 ACATCCGTATCTAGTTCATAGTGG 57.423 41.667 0.00 0.00 32.85 4.00
1475 2659 9.628500 TGCATCTATATACATCCGTATCTAGTT 57.372 33.333 0.00 0.00 39.17 2.24
1476 2660 9.800572 ATGCATCTATATACATCCGTATCTAGT 57.199 33.333 0.00 0.00 39.17 2.57
1483 2667 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
1492 2676 9.625747 TGAATCCACACTTAAAATGCATCTATA 57.374 29.630 0.00 0.00 0.00 1.31
1493 2677 8.523915 TGAATCCACACTTAAAATGCATCTAT 57.476 30.769 0.00 0.00 0.00 1.98
1494 2678 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
1495 2679 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
1496 2680 7.760794 TGAATGAATCCACACTTAAAATGCATC 59.239 33.333 0.00 0.00 0.00 3.91
1497 2681 7.613585 TGAATGAATCCACACTTAAAATGCAT 58.386 30.769 0.00 0.00 0.00 3.96
1498 2682 6.990798 TGAATGAATCCACACTTAAAATGCA 58.009 32.000 0.00 0.00 0.00 3.96
1499 2683 8.483307 AATGAATGAATCCACACTTAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
1505 2689 8.956426 GGAGTAAAATGAATGAATCCACACTTA 58.044 33.333 0.00 0.00 0.00 2.24
1506 2690 7.362056 CGGAGTAAAATGAATGAATCCACACTT 60.362 37.037 0.00 0.00 0.00 3.16
1507 2691 6.094048 CGGAGTAAAATGAATGAATCCACACT 59.906 38.462 0.00 0.00 0.00 3.55
1508 2692 6.128007 ACGGAGTAAAATGAATGAATCCACAC 60.128 38.462 0.00 0.00 41.94 3.82
1509 2693 5.943416 ACGGAGTAAAATGAATGAATCCACA 59.057 36.000 0.00 0.00 41.94 4.17
1510 2694 6.436843 ACGGAGTAAAATGAATGAATCCAC 57.563 37.500 0.00 0.00 41.94 4.02
1528 2712 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
1529 2713 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
1530 2714 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
1542 2726 3.616956 TTGCAGAGATTCCACTAGGTG 57.383 47.619 0.00 0.00 35.89 4.00
1543 2727 3.840666 TCTTTGCAGAGATTCCACTAGGT 59.159 43.478 2.15 0.00 35.89 3.08
1544 2728 4.081198 AGTCTTTGCAGAGATTCCACTAGG 60.081 45.833 10.53 0.00 0.00 3.02
1545 2729 5.083533 AGTCTTTGCAGAGATTCCACTAG 57.916 43.478 10.53 0.00 0.00 2.57
1546 2730 5.489792 AAGTCTTTGCAGAGATTCCACTA 57.510 39.130 10.53 0.00 0.00 2.74
1547 2731 4.363991 AAGTCTTTGCAGAGATTCCACT 57.636 40.909 10.53 0.00 0.00 4.00
1548 2732 4.997395 TGTAAGTCTTTGCAGAGATTCCAC 59.003 41.667 10.53 8.48 0.00 4.02
1549 2733 5.227569 TGTAAGTCTTTGCAGAGATTCCA 57.772 39.130 10.53 4.39 0.00 3.53
1550 2734 6.749923 AATGTAAGTCTTTGCAGAGATTCC 57.250 37.500 10.53 0.00 32.32 3.01
1551 2735 8.394121 CCTAAATGTAAGTCTTTGCAGAGATTC 58.606 37.037 10.53 0.00 32.32 2.52
1552 2736 8.103305 TCCTAAATGTAAGTCTTTGCAGAGATT 58.897 33.333 10.53 3.04 32.32 2.40
1553 2737 7.624549 TCCTAAATGTAAGTCTTTGCAGAGAT 58.375 34.615 10.53 0.00 32.32 2.75
1554 2738 7.004555 TCCTAAATGTAAGTCTTTGCAGAGA 57.995 36.000 2.15 2.15 32.32 3.10
1555 2739 7.522374 GTTCCTAAATGTAAGTCTTTGCAGAG 58.478 38.462 0.00 0.00 32.32 3.35
1556 2740 6.147164 CGTTCCTAAATGTAAGTCTTTGCAGA 59.853 38.462 0.00 0.00 32.32 4.26
1557 2741 6.307155 CGTTCCTAAATGTAAGTCTTTGCAG 58.693 40.000 0.00 0.00 32.32 4.41
1558 2742 5.180492 CCGTTCCTAAATGTAAGTCTTTGCA 59.820 40.000 0.00 0.00 33.36 4.08
1559 2743 5.410439 TCCGTTCCTAAATGTAAGTCTTTGC 59.590 40.000 0.00 0.00 0.00 3.68
1560 2744 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
1561 2745 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1562 2746 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1563 2747 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1564 2748 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1565 2749 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1566 2750 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1567 2751 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1568 2752 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1569 2753 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1570 2754 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
1571 2755 7.706674 TCTATATACTCCCTCCGTTCCTAAAT 58.293 38.462 0.00 0.00 0.00 1.40
1572 2756 7.095183 TCTATATACTCCCTCCGTTCCTAAA 57.905 40.000 0.00 0.00 0.00 1.85
1573 2757 6.708885 TCTATATACTCCCTCCGTTCCTAA 57.291 41.667 0.00 0.00 0.00 2.69
1574 2758 6.708885 TTCTATATACTCCCTCCGTTCCTA 57.291 41.667 0.00 0.00 0.00 2.94
1575 2759 5.595814 TTCTATATACTCCCTCCGTTCCT 57.404 43.478 0.00 0.00 0.00 3.36
1576 2760 5.537674 TGTTTCTATATACTCCCTCCGTTCC 59.462 44.000 0.00 0.00 0.00 3.62
1577 2761 6.264970 ACTGTTTCTATATACTCCCTCCGTTC 59.735 42.308 0.00 0.00 0.00 3.95
1578 2762 6.134754 ACTGTTTCTATATACTCCCTCCGTT 58.865 40.000 0.00 0.00 0.00 4.44
1579 2763 5.703310 ACTGTTTCTATATACTCCCTCCGT 58.297 41.667 0.00 0.00 0.00 4.69
1580 2764 7.756395 TTACTGTTTCTATATACTCCCTCCG 57.244 40.000 0.00 0.00 0.00 4.63
1613 2797 5.258456 AGCATCAATGGCAGTCAAATTAG 57.742 39.130 0.00 0.00 0.00 1.73
1619 2803 0.328926 TGGAGCATCAATGGCAGTCA 59.671 50.000 0.00 0.00 36.25 3.41
1620 2804 1.466856 TTGGAGCATCAATGGCAGTC 58.533 50.000 0.00 0.00 36.25 3.51
1621 2805 1.927487 TTTGGAGCATCAATGGCAGT 58.073 45.000 0.00 0.00 36.25 4.40
1623 2807 3.985019 ATTTTTGGAGCATCAATGGCA 57.015 38.095 0.00 0.00 36.25 4.92
1624 2808 4.510571 AGAATTTTTGGAGCATCAATGGC 58.489 39.130 0.00 0.00 36.25 4.40
1638 2826 6.997655 GGATGTTTCTCCCTGAAGAATTTTT 58.002 36.000 0.00 0.00 35.30 1.94
1664 2852 1.156736 TTTTCCTCGCTAGCTGCAAC 58.843 50.000 13.93 0.00 43.06 4.17
1676 2864 2.098117 CCATGCCTTGTCGATTTTCCTC 59.902 50.000 0.00 0.00 0.00 3.71
1744 2932 2.203126 CCTGGCGCAGAATCTCCC 60.203 66.667 10.83 0.00 32.44 4.30
1786 2974 4.383552 CCTCAGGGAACACATCTAAAGGAG 60.384 50.000 0.00 0.00 33.58 3.69
1926 3245 7.964604 AAGAGTAAGTTGGTAAGCAAAGTAG 57.035 36.000 0.00 0.00 0.00 2.57
1987 3310 0.248215 GCATCATTTCTGGTTCGGCG 60.248 55.000 0.00 0.00 0.00 6.46
2066 3389 4.299155 CGAACAGCGAACACTCCATATAT 58.701 43.478 0.00 0.00 44.57 0.86
2190 3513 5.643379 TTAAGACCCTTGAACATGATTGC 57.357 39.130 0.00 0.00 0.00 3.56
2286 3772 4.679372 GCCATAGAAATTTGCCCGCTTTAA 60.679 41.667 0.00 0.00 0.00 1.52
2349 3839 6.475402 ACCAAATAGCATTGTTTATAAAGCGC 59.525 34.615 0.00 0.00 0.00 5.92
2513 4023 5.467035 TTTCCATTGACCCTCATGAAAAC 57.533 39.130 0.00 0.00 0.00 2.43
2544 4059 5.221224 TGGCCTATTTTGCATGCAATACTAC 60.221 40.000 32.27 19.46 35.70 2.73
2578 4134 8.790718 CATTTGTGGGAATAGAAATCATAGGAG 58.209 37.037 0.00 0.00 0.00 3.69
2746 4949 5.047872 ACTCAACAAAACATGCATGCTCATA 60.048 36.000 26.53 0.00 0.00 2.15
3004 5208 0.325933 CCCATCTCCTGTTCTGTGCA 59.674 55.000 0.00 0.00 0.00 4.57
3018 5222 8.116026 AGGGATAAAACCATATATGAACCCATC 58.884 37.037 14.54 10.15 35.43 3.51
3019 5223 7.895429 CAGGGATAAAACCATATATGAACCCAT 59.105 37.037 14.54 2.08 35.43 4.00
3129 5341 2.679059 CGAATCTCACATGGCAAGGACT 60.679 50.000 0.00 0.00 0.00 3.85
3194 5406 1.125093 TCTTCCCGGTGAGCTTTCCA 61.125 55.000 0.00 0.00 0.00 3.53
3200 5412 0.250770 AAACCTTCTTCCCGGTGAGC 60.251 55.000 0.00 0.00 32.86 4.26
3303 5515 0.613777 ACTCCGTCATTTCCACCCTC 59.386 55.000 0.00 0.00 0.00 4.30
3417 5631 3.380004 AGCATCGAACTTGTTTTCAACCA 59.620 39.130 0.00 0.00 35.77 3.67
3432 5646 5.940192 AAACACAAACATTCTAGCATCGA 57.060 34.783 0.00 0.00 0.00 3.59
3434 5648 7.816640 TCCTAAAACACAAACATTCTAGCATC 58.183 34.615 0.00 0.00 0.00 3.91
3460 5675 9.860898 GAAATCCAACTGCTACTTAAATTCAAT 57.139 29.630 0.00 0.00 0.00 2.57
3513 5729 5.106442 ACAAAAGCTAAAACCCAAACTTCG 58.894 37.500 0.00 0.00 0.00 3.79
3536 5752 4.451891 TCAGCATATCTGGGCCATAAAA 57.548 40.909 6.72 0.00 43.06 1.52
3592 5810 2.103153 TCTGGAGTTCTGGACCACTT 57.897 50.000 0.00 0.00 0.00 3.16
3695 5937 6.486993 GGGAAAATAGCAGGACTCGAAATATT 59.513 38.462 0.00 0.00 0.00 1.28
3744 6135 8.864069 AAGTGTAGATGACTTCAGAATTATCG 57.136 34.615 0.00 0.00 0.00 2.92
3761 6152 0.728129 CGTTGCGCTCGAAGTGTAGA 60.728 55.000 17.53 0.00 0.00 2.59
3764 6155 1.149361 TTTCGTTGCGCTCGAAGTGT 61.149 50.000 28.00 0.00 45.54 3.55
3775 6166 0.040067 CAGGTGAGGCTTTTCGTTGC 60.040 55.000 0.00 0.00 0.00 4.17
3778 6169 1.347707 TGATCAGGTGAGGCTTTTCGT 59.652 47.619 0.00 0.00 0.00 3.85
3789 6180 0.947660 CGCGGATGGATGATCAGGTG 60.948 60.000 0.09 0.00 31.91 4.00
4007 6417 6.422333 ACTACTCAGAGACATCATCAGAGAA 58.578 40.000 3.79 0.00 31.27 2.87
4041 6451 7.527183 GCTTCATAATTTGCGAGTTTGAAAAAC 59.473 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.