Multiple sequence alignment - TraesCS1B01G307500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G307500 chr1B 100.000 8201 0 0 1 8201 530465814 530474014 0.000000e+00 15145.0
1 TraesCS1B01G307500 chr1B 94.131 1346 78 1 5018 6362 141119885 141118540 0.000000e+00 2047.0
2 TraesCS1B01G307500 chr1A 95.048 1999 71 10 1147 3142 493206012 493207985 0.000000e+00 3118.0
3 TraesCS1B01G307500 chr1A 96.411 1226 39 5 3141 4362 493208147 493209371 0.000000e+00 2015.0
4 TraesCS1B01G307500 chr1A 90.837 1004 65 17 6688 7676 493210166 493211157 0.000000e+00 1319.0
5 TraesCS1B01G307500 chr1A 94.104 424 14 6 4389 4803 493209368 493209789 1.160000e-177 634.0
6 TraesCS1B01G307500 chr1A 87.524 521 31 16 7682 8195 493211274 493211767 9.230000e-159 571.0
7 TraesCS1B01G307500 chr1A 86.279 430 31 13 140 562 493204803 493205211 7.550000e-120 442.0
8 TraesCS1B01G307500 chr1A 83.575 414 21 22 683 1060 493205432 493205834 2.190000e-90 344.0
9 TraesCS1B01G307500 chr1A 91.379 232 9 9 4803 5029 493209954 493210179 2.880000e-79 307.0
10 TraesCS1B01G307500 chr2B 95.173 1678 71 2 5020 6688 464438341 464440017 0.000000e+00 2641.0
11 TraesCS1B01G307500 chr2B 93.977 1677 88 6 5019 6687 762387624 762385953 0.000000e+00 2525.0
12 TraesCS1B01G307500 chr2B 93.103 1682 59 16 5022 6689 221094584 221096222 0.000000e+00 2410.0
13 TraesCS1B01G307500 chr2B 85.998 1057 108 27 5633 6687 795274676 795273658 0.000000e+00 1096.0
14 TraesCS1B01G307500 chr3B 95.141 1667 56 5 5026 6692 775828271 775829912 0.000000e+00 2606.0
15 TraesCS1B01G307500 chr3B 94.013 1687 91 4 5016 6692 276490921 276489235 0.000000e+00 2547.0
16 TraesCS1B01G307500 chr7B 94.740 1673 78 2 5025 6687 184978974 184977302 0.000000e+00 2593.0
17 TraesCS1B01G307500 chr7B 89.571 700 50 12 6011 6687 285450040 285449341 0.000000e+00 867.0
18 TraesCS1B01G307500 chr7B 88.077 671 64 8 6002 6660 444228230 444228896 0.000000e+00 782.0
19 TraesCS1B01G307500 chr6B 94.205 1691 85 4 5013 6695 346316654 346318339 0.000000e+00 2567.0
20 TraesCS1B01G307500 chr6B 87.970 665 65 4 6004 6660 349228817 349229474 0.000000e+00 771.0
21 TraesCS1B01G307500 chr6B 94.737 38 2 0 6652 6689 529737872 529737835 8.890000e-05 60.2
22 TraesCS1B01G307500 chr5B 93.802 1678 90 5 5020 6687 394972870 394971197 0.000000e+00 2510.0
23 TraesCS1B01G307500 chr5B 93.381 1692 86 16 5020 6690 613280674 613278988 0.000000e+00 2481.0
24 TraesCS1B01G307500 chr5B 93.785 531 22 3 6165 6687 297032232 297031705 0.000000e+00 787.0
25 TraesCS1B01G307500 chr5B 80.576 278 38 12 3625 3893 427245010 427244740 5.020000e-47 200.0
26 TraesCS1B01G307500 chr1D 93.466 1714 75 21 2732 4425 392142779 392141083 0.000000e+00 2510.0
27 TraesCS1B01G307500 chr1D 92.967 1493 59 14 1186 2675 392144239 392142790 0.000000e+00 2134.0
28 TraesCS1B01G307500 chr1D 92.136 852 29 13 6843 7676 392140301 392139470 0.000000e+00 1168.0
29 TraesCS1B01G307500 chr1D 94.004 467 15 7 4421 4877 392140981 392140518 0.000000e+00 695.0
30 TraesCS1B01G307500 chr1D 88.046 527 30 16 7682 8200 392139420 392138919 1.970000e-165 593.0
31 TraesCS1B01G307500 chr1D 83.826 507 30 19 599 1080 392145067 392144588 1.260000e-117 435.0
32 TraesCS1B01G307500 chr1D 97.222 108 3 0 4912 5019 392140525 392140418 5.060000e-42 183.0
33 TraesCS1B01G307500 chr1D 87.903 124 13 2 6691 6813 392140419 392140297 2.390000e-30 145.0
34 TraesCS1B01G307500 chr6A 90.694 634 45 7 6033 6660 200001846 200002471 0.000000e+00 832.0
35 TraesCS1B01G307500 chr6A 91.667 84 5 2 3764 3845 521561412 521561329 1.870000e-21 115.0
36 TraesCS1B01G307500 chr7A 88.450 658 64 3 6005 6660 211626950 211626303 0.000000e+00 784.0
37 TraesCS1B01G307500 chr7A 83.133 249 37 4 3629 3875 251743518 251743273 1.070000e-53 222.0
38 TraesCS1B01G307500 chr2A 91.259 572 45 3 6091 6660 281748353 281748921 0.000000e+00 774.0
39 TraesCS1B01G307500 chr5A 83.394 277 34 10 3625 3893 462151870 462151598 6.360000e-61 246.0
40 TraesCS1B01G307500 chr2D 80.000 240 32 12 3658 3894 556706036 556706262 6.590000e-36 163.0
41 TraesCS1B01G307500 chr2D 78.512 242 43 8 3655 3893 46197801 46198036 5.130000e-32 150.0
42 TraesCS1B01G307500 chr6D 85.806 155 16 6 3728 3878 2855799 2855951 8.520000e-35 159.0
43 TraesCS1B01G307500 chr7D 83.721 172 17 9 3709 3875 25680336 25680171 1.430000e-32 152.0
44 TraesCS1B01G307500 chr3D 78.509 228 36 7 3660 3878 204157738 204157515 3.990000e-28 137.0
45 TraesCS1B01G307500 chr5D 85.135 74 7 3 3726 3798 361648505 361648435 1.140000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G307500 chr1B 530465814 530474014 8200 False 15145.000 15145 100.000000 1 8201 1 chr1B.!!$F1 8200
1 TraesCS1B01G307500 chr1B 141118540 141119885 1345 True 2047.000 2047 94.131000 5018 6362 1 chr1B.!!$R1 1344
2 TraesCS1B01G307500 chr1A 493204803 493211767 6964 False 1093.750 3118 90.644625 140 8195 8 chr1A.!!$F1 8055
3 TraesCS1B01G307500 chr2B 464438341 464440017 1676 False 2641.000 2641 95.173000 5020 6688 1 chr2B.!!$F2 1668
4 TraesCS1B01G307500 chr2B 762385953 762387624 1671 True 2525.000 2525 93.977000 5019 6687 1 chr2B.!!$R1 1668
5 TraesCS1B01G307500 chr2B 221094584 221096222 1638 False 2410.000 2410 93.103000 5022 6689 1 chr2B.!!$F1 1667
6 TraesCS1B01G307500 chr2B 795273658 795274676 1018 True 1096.000 1096 85.998000 5633 6687 1 chr2B.!!$R2 1054
7 TraesCS1B01G307500 chr3B 775828271 775829912 1641 False 2606.000 2606 95.141000 5026 6692 1 chr3B.!!$F1 1666
8 TraesCS1B01G307500 chr3B 276489235 276490921 1686 True 2547.000 2547 94.013000 5016 6692 1 chr3B.!!$R1 1676
9 TraesCS1B01G307500 chr7B 184977302 184978974 1672 True 2593.000 2593 94.740000 5025 6687 1 chr7B.!!$R1 1662
10 TraesCS1B01G307500 chr7B 285449341 285450040 699 True 867.000 867 89.571000 6011 6687 1 chr7B.!!$R2 676
11 TraesCS1B01G307500 chr7B 444228230 444228896 666 False 782.000 782 88.077000 6002 6660 1 chr7B.!!$F1 658
12 TraesCS1B01G307500 chr6B 346316654 346318339 1685 False 2567.000 2567 94.205000 5013 6695 1 chr6B.!!$F1 1682
13 TraesCS1B01G307500 chr6B 349228817 349229474 657 False 771.000 771 87.970000 6004 6660 1 chr6B.!!$F2 656
14 TraesCS1B01G307500 chr5B 394971197 394972870 1673 True 2510.000 2510 93.802000 5020 6687 1 chr5B.!!$R2 1667
15 TraesCS1B01G307500 chr5B 613278988 613280674 1686 True 2481.000 2481 93.381000 5020 6690 1 chr5B.!!$R4 1670
16 TraesCS1B01G307500 chr5B 297031705 297032232 527 True 787.000 787 93.785000 6165 6687 1 chr5B.!!$R1 522
17 TraesCS1B01G307500 chr1D 392138919 392145067 6148 True 982.875 2510 91.196250 599 8200 8 chr1D.!!$R1 7601
18 TraesCS1B01G307500 chr6A 200001846 200002471 625 False 832.000 832 90.694000 6033 6660 1 chr6A.!!$F1 627
19 TraesCS1B01G307500 chr7A 211626303 211626950 647 True 784.000 784 88.450000 6005 6660 1 chr7A.!!$R1 655
20 TraesCS1B01G307500 chr2A 281748353 281748921 568 False 774.000 774 91.259000 6091 6660 1 chr2A.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 289 0.108138 AGGATGAGCACGCCAACTAC 60.108 55.000 0.0 0.0 0.00 2.73 F
981 1184 0.188834 CAAACCCAAACCCTACCCCA 59.811 55.000 0.0 0.0 0.00 4.96 F
1091 1295 0.750182 CTCGACTCCTCCCACTCCTC 60.750 65.000 0.0 0.0 0.00 3.71 F
2688 3138 0.242825 CATTTGTGTGCAGAGGGCTG 59.757 55.000 0.0 0.0 45.15 4.85 F
2701 3151 0.407139 AGGGCTGCAAATCTTCTGGT 59.593 50.000 0.5 0.0 0.00 4.00 F
4123 4753 1.308998 GTATTGGGCAGGAATGGACG 58.691 55.000 0.0 0.0 0.00 4.79 F
5474 6419 0.321919 CATGGACACCACCTGGACAG 60.322 60.000 0.0 0.0 35.80 3.51 F
6251 7255 2.066999 GGATCTCCTGGACCGCCTT 61.067 63.158 0.0 0.0 34.31 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2566 1.135689 CATGCACTAAGACCGTTTGGC 60.136 52.381 0.00 0.0 39.70 4.52 R
2631 3081 1.202582 AGATGAACTGAACCGACCGAG 59.797 52.381 0.00 0.0 0.00 4.63 R
2936 3386 2.029110 CGATGGGCCAATTTGTCAACTT 60.029 45.455 11.89 0.0 0.00 2.66 R
4384 5047 0.107410 TTGGTTGAGGACGTGCAGTT 60.107 50.000 10.52 0.0 0.00 3.16 R
4388 5051 0.249911 AGACTTGGTTGAGGACGTGC 60.250 55.000 0.00 0.0 0.00 5.34 R
5850 6804 0.104855 GCGTCCACATCCAGCAGATA 59.895 55.000 0.00 0.0 32.37 1.98 R
6609 7625 0.541998 GGGTTGCTTGCTTAGGGGTT 60.542 55.000 0.00 0.0 0.00 4.11 R
7672 8714 0.105964 CGGCCATCCACGGAAATAGA 59.894 55.000 2.24 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.301577 AGTGAAGTCCGAATAGCTGC 57.698 50.000 0.00 0.00 0.00 5.25
21 22 1.550524 AGTGAAGTCCGAATAGCTGCA 59.449 47.619 1.02 0.00 0.00 4.41
22 23 2.028112 AGTGAAGTCCGAATAGCTGCAA 60.028 45.455 1.02 0.00 0.00 4.08
23 24 2.939103 GTGAAGTCCGAATAGCTGCAAT 59.061 45.455 1.02 0.00 0.00 3.56
24 25 3.001736 GTGAAGTCCGAATAGCTGCAATC 59.998 47.826 1.02 0.00 0.00 2.67
25 26 2.246719 AGTCCGAATAGCTGCAATCC 57.753 50.000 1.02 0.00 0.00 3.01
26 27 1.765314 AGTCCGAATAGCTGCAATCCT 59.235 47.619 1.02 0.00 0.00 3.24
27 28 1.869767 GTCCGAATAGCTGCAATCCTG 59.130 52.381 1.02 0.00 0.00 3.86
28 29 1.762370 TCCGAATAGCTGCAATCCTGA 59.238 47.619 1.02 0.00 0.00 3.86
29 30 2.141517 CCGAATAGCTGCAATCCTGAG 58.858 52.381 1.02 0.00 0.00 3.35
30 31 2.141517 CGAATAGCTGCAATCCTGAGG 58.858 52.381 1.02 0.00 0.00 3.86
31 32 1.878734 GAATAGCTGCAATCCTGAGGC 59.121 52.381 1.02 0.00 0.00 4.70
32 33 1.138568 ATAGCTGCAATCCTGAGGCT 58.861 50.000 1.02 0.00 36.41 4.58
33 34 0.179702 TAGCTGCAATCCTGAGGCTG 59.820 55.000 1.02 0.00 34.94 4.85
34 35 2.772691 GCTGCAATCCTGAGGCTGC 61.773 63.158 15.83 15.83 43.39 5.25
35 36 1.378119 CTGCAATCCTGAGGCTGCA 60.378 57.895 21.64 21.64 38.35 4.41
36 37 1.377366 CTGCAATCCTGAGGCTGCAG 61.377 60.000 28.82 28.82 45.50 4.41
37 38 1.077930 GCAATCCTGAGGCTGCAGA 60.078 57.895 20.43 0.00 38.14 4.26
38 39 0.465824 GCAATCCTGAGGCTGCAGAT 60.466 55.000 20.43 4.39 38.14 2.90
39 40 1.202734 GCAATCCTGAGGCTGCAGATA 60.203 52.381 20.43 0.00 38.14 1.98
40 41 2.552591 GCAATCCTGAGGCTGCAGATAT 60.553 50.000 20.43 0.82 38.14 1.63
41 42 3.075148 CAATCCTGAGGCTGCAGATATG 58.925 50.000 20.43 2.49 38.14 1.78
42 43 0.395686 TCCTGAGGCTGCAGATATGC 59.604 55.000 20.43 5.09 38.14 3.14
43 44 0.397187 CCTGAGGCTGCAGATATGCT 59.603 55.000 20.43 0.00 38.14 3.79
44 45 1.202782 CCTGAGGCTGCAGATATGCTT 60.203 52.381 20.43 0.00 38.14 3.91
45 46 2.038164 CCTGAGGCTGCAGATATGCTTA 59.962 50.000 20.43 0.00 38.14 3.09
46 47 3.307550 CCTGAGGCTGCAGATATGCTTAT 60.308 47.826 20.43 0.00 38.14 1.73
47 48 3.933955 CTGAGGCTGCAGATATGCTTATC 59.066 47.826 20.43 10.84 38.14 1.75
48 49 3.581770 TGAGGCTGCAGATATGCTTATCT 59.418 43.478 20.43 14.70 44.39 1.98
61 62 8.916062 AGATATGCTTATCTGATACTCCATCTG 58.084 37.037 18.59 0.00 42.40 2.90
62 63 5.144692 TGCTTATCTGATACTCCATCTGC 57.855 43.478 0.00 0.00 34.46 4.26
63 64 4.590222 TGCTTATCTGATACTCCATCTGCA 59.410 41.667 0.00 0.00 34.46 4.41
64 65 5.070847 TGCTTATCTGATACTCCATCTGCAA 59.929 40.000 0.00 0.00 34.46 4.08
65 66 5.407995 GCTTATCTGATACTCCATCTGCAAC 59.592 44.000 0.00 0.00 34.46 4.17
66 67 6.737720 TTATCTGATACTCCATCTGCAACT 57.262 37.500 0.00 0.00 34.46 3.16
67 68 5.627182 ATCTGATACTCCATCTGCAACTT 57.373 39.130 0.00 0.00 34.46 2.66
68 69 6.737720 ATCTGATACTCCATCTGCAACTTA 57.262 37.500 0.00 0.00 34.46 2.24
69 70 6.544928 TCTGATACTCCATCTGCAACTTAA 57.455 37.500 0.00 0.00 34.46 1.85
70 71 7.129457 TCTGATACTCCATCTGCAACTTAAT 57.871 36.000 0.00 0.00 34.46 1.40
71 72 8.250143 TCTGATACTCCATCTGCAACTTAATA 57.750 34.615 0.00 0.00 34.46 0.98
72 73 8.144478 TCTGATACTCCATCTGCAACTTAATAC 58.856 37.037 0.00 0.00 34.46 1.89
73 74 8.023021 TGATACTCCATCTGCAACTTAATACT 57.977 34.615 0.00 0.00 34.46 2.12
74 75 9.143155 TGATACTCCATCTGCAACTTAATACTA 57.857 33.333 0.00 0.00 34.46 1.82
78 79 9.988815 ACTCCATCTGCAACTTAATACTATAAG 57.011 33.333 0.00 0.00 38.56 1.73
80 81 9.982651 TCCATCTGCAACTTAATACTATAAGAC 57.017 33.333 1.38 0.00 36.57 3.01
81 82 9.764363 CCATCTGCAACTTAATACTATAAGACA 57.236 33.333 1.38 0.00 36.57 3.41
132 133 7.676947 ACTTACATTAAGTTACAGAAGGAGCA 58.323 34.615 0.00 0.00 46.27 4.26
133 134 7.819900 ACTTACATTAAGTTACAGAAGGAGCAG 59.180 37.037 0.00 0.00 46.27 4.24
134 135 6.360370 ACATTAAGTTACAGAAGGAGCAGA 57.640 37.500 0.00 0.00 0.00 4.26
135 136 6.951971 ACATTAAGTTACAGAAGGAGCAGAT 58.048 36.000 0.00 0.00 0.00 2.90
136 137 8.079211 ACATTAAGTTACAGAAGGAGCAGATA 57.921 34.615 0.00 0.00 0.00 1.98
137 138 8.709308 ACATTAAGTTACAGAAGGAGCAGATAT 58.291 33.333 0.00 0.00 0.00 1.63
138 139 9.202273 CATTAAGTTACAGAAGGAGCAGATATC 57.798 37.037 0.00 0.00 0.00 1.63
191 192 1.302949 GGTTGCATACCAGCCCTCA 59.697 57.895 11.69 0.00 46.92 3.86
200 201 2.528818 CCAGCCCTCACCTGGTCAA 61.529 63.158 0.00 0.00 43.86 3.18
202 203 2.358737 GCCCTCACCTGGTCAACG 60.359 66.667 0.00 0.00 0.00 4.10
235 236 6.293516 CGGCTAAATTAGTTGGTGTGTTTGTA 60.294 38.462 1.68 0.00 0.00 2.41
236 237 6.859508 GGCTAAATTAGTTGGTGTGTTTGTAC 59.140 38.462 1.68 0.00 0.00 2.90
237 238 7.255346 GGCTAAATTAGTTGGTGTGTTTGTACT 60.255 37.037 1.68 0.00 0.00 2.73
238 239 8.776470 GCTAAATTAGTTGGTGTGTTTGTACTA 58.224 33.333 1.68 0.00 0.00 1.82
286 289 0.108138 AGGATGAGCACGCCAACTAC 60.108 55.000 0.00 0.00 0.00 2.73
288 291 1.002366 GATGAGCACGCCAACTACAG 58.998 55.000 0.00 0.00 0.00 2.74
294 297 2.028476 AGCACGCCAACTACAGAATACA 60.028 45.455 0.00 0.00 0.00 2.29
304 307 6.539826 CCAACTACAGAATACAGATGCAATGA 59.460 38.462 9.10 0.00 0.00 2.57
316 319 9.961265 ATACAGATGCAATGATACTGAAAATTG 57.039 29.630 9.10 0.00 33.98 2.32
329 332 4.977963 ACTGAAAATTGTGCTCATTTGACG 59.022 37.500 0.00 0.00 0.00 4.35
336 339 6.741992 ATTGTGCTCATTTGACGAATTCTA 57.258 33.333 3.52 0.00 0.00 2.10
340 343 6.257849 TGTGCTCATTTGACGAATTCTATACC 59.742 38.462 3.52 0.00 0.00 2.73
346 349 9.173021 TCATTTGACGAATTCTATACCATTTGT 57.827 29.630 3.52 0.00 30.83 2.83
347 350 9.225201 CATTTGACGAATTCTATACCATTTGTG 57.775 33.333 3.52 0.00 28.68 3.33
348 351 6.358118 TGACGAATTCTATACCATTTGTGC 57.642 37.500 3.52 0.00 28.68 4.57
349 352 5.295787 TGACGAATTCTATACCATTTGTGCC 59.704 40.000 3.52 0.00 28.68 5.01
350 353 4.272504 ACGAATTCTATACCATTTGTGCCG 59.727 41.667 3.52 0.00 0.00 5.69
351 354 4.537015 GAATTCTATACCATTTGTGCCGC 58.463 43.478 0.00 0.00 0.00 6.53
352 355 1.961793 TCTATACCATTTGTGCCGCC 58.038 50.000 0.00 0.00 0.00 6.13
413 416 4.955811 TCTTGTCTACCTGAAGCAGAAA 57.044 40.909 0.00 0.00 32.44 2.52
419 422 4.926832 GTCTACCTGAAGCAGAAAAGTCTC 59.073 45.833 0.00 0.00 32.44 3.36
420 423 2.760374 ACCTGAAGCAGAAAAGTCTCG 58.240 47.619 0.00 0.00 32.44 4.04
421 424 2.365617 ACCTGAAGCAGAAAAGTCTCGA 59.634 45.455 0.00 0.00 32.44 4.04
423 426 2.734079 CTGAAGCAGAAAAGTCTCGACC 59.266 50.000 0.00 0.00 32.44 4.79
447 450 4.393062 CCTTTGTGTTTGATCGAGCTATGT 59.607 41.667 0.90 0.00 0.00 2.29
451 454 2.766263 TGTTTGATCGAGCTATGTCCCT 59.234 45.455 0.90 0.00 0.00 4.20
452 455 3.958147 TGTTTGATCGAGCTATGTCCCTA 59.042 43.478 0.90 0.00 0.00 3.53
453 456 4.588951 TGTTTGATCGAGCTATGTCCCTAT 59.411 41.667 0.90 0.00 0.00 2.57
473 477 6.448006 CCTATATCTCTCGTACCTTTGTTGG 58.552 44.000 0.00 0.00 0.00 3.77
476 480 4.778534 TCTCTCGTACCTTTGTTGGTAG 57.221 45.455 0.00 0.00 42.57 3.18
482 486 3.244318 CGTACCTTTGTTGGTAGGGAGTT 60.244 47.826 0.00 0.00 42.57 3.01
483 487 3.503800 ACCTTTGTTGGTAGGGAGTTC 57.496 47.619 0.00 0.00 38.79 3.01
506 510 5.968387 GATTTGATCGAACCACGTTATCT 57.032 39.130 0.00 0.00 43.13 1.98
507 511 6.345920 GATTTGATCGAACCACGTTATCTT 57.654 37.500 0.00 0.00 43.13 2.40
508 512 7.459394 GATTTGATCGAACCACGTTATCTTA 57.541 36.000 0.00 0.00 43.13 2.10
509 513 8.073355 GATTTGATCGAACCACGTTATCTTAT 57.927 34.615 0.00 0.00 43.13 1.73
512 516 6.436261 TGATCGAACCACGTTATCTTATCTC 58.564 40.000 0.00 0.00 43.13 2.75
516 520 5.681982 CGAACCACGTTATCTTATCTCTGTC 59.318 44.000 0.00 0.00 37.22 3.51
533 537 5.833667 TCTCTGTCTTTAGACTGGAGTTCAA 59.166 40.000 20.97 9.07 44.99 2.69
562 569 0.468400 AGGCTACTGGAGGATCGGTC 60.468 60.000 0.00 0.00 34.37 4.79
564 571 1.202903 GGCTACTGGAGGATCGGTCTA 60.203 57.143 0.00 0.00 34.37 2.59
565 572 2.555670 GGCTACTGGAGGATCGGTCTAT 60.556 54.545 0.00 0.00 34.37 1.98
566 573 2.750712 GCTACTGGAGGATCGGTCTATC 59.249 54.545 0.00 0.00 34.37 2.08
567 574 3.560453 GCTACTGGAGGATCGGTCTATCT 60.560 52.174 0.00 0.00 34.37 1.98
568 575 3.603965 ACTGGAGGATCGGTCTATCTT 57.396 47.619 0.00 0.00 34.37 2.40
569 576 3.226777 ACTGGAGGATCGGTCTATCTTG 58.773 50.000 0.00 0.00 34.37 3.02
585 759 2.201732 TCTTGTCGCACACAGAGAAAC 58.798 47.619 0.00 0.00 35.97 2.78
588 762 1.067416 TCGCACACAGAGAAACGCT 59.933 52.632 0.00 0.00 0.00 5.07
589 763 0.312729 TCGCACACAGAGAAACGCTA 59.687 50.000 0.00 0.00 0.00 4.26
590 764 1.067846 TCGCACACAGAGAAACGCTAT 60.068 47.619 0.00 0.00 0.00 2.97
591 765 1.321743 CGCACACAGAGAAACGCTATC 59.678 52.381 0.00 0.00 0.00 2.08
592 766 1.321743 GCACACAGAGAAACGCTATCG 59.678 52.381 0.00 0.00 42.43 2.92
593 767 1.920574 CACACAGAGAAACGCTATCGG 59.079 52.381 0.00 0.00 40.69 4.18
594 768 1.135083 ACACAGAGAAACGCTATCGGG 60.135 52.381 0.00 0.00 40.69 5.14
595 769 1.134367 CACAGAGAAACGCTATCGGGA 59.866 52.381 0.00 0.00 40.69 5.14
596 770 1.822990 ACAGAGAAACGCTATCGGGAA 59.177 47.619 0.00 0.00 40.69 3.97
597 771 2.431057 ACAGAGAAACGCTATCGGGAAT 59.569 45.455 0.00 0.00 40.69 3.01
601 775 0.935196 AAACGCTATCGGGAATTCGC 59.065 50.000 12.30 12.30 40.69 4.70
612 786 2.822764 GGGAATTCGCGATCAAGTAGT 58.177 47.619 10.88 0.00 0.00 2.73
687 863 2.182030 GCGTCCCTCTCTGGTTCG 59.818 66.667 0.00 0.00 34.73 3.95
688 864 2.182030 CGTCCCTCTCTGGTTCGC 59.818 66.667 0.00 0.00 0.00 4.70
689 865 2.344203 CGTCCCTCTCTGGTTCGCT 61.344 63.158 0.00 0.00 0.00 4.93
690 866 1.878656 CGTCCCTCTCTGGTTCGCTT 61.879 60.000 0.00 0.00 0.00 4.68
691 867 0.321996 GTCCCTCTCTGGTTCGCTTT 59.678 55.000 0.00 0.00 0.00 3.51
692 868 1.056660 TCCCTCTCTGGTTCGCTTTT 58.943 50.000 0.00 0.00 0.00 2.27
693 869 1.160137 CCCTCTCTGGTTCGCTTTTG 58.840 55.000 0.00 0.00 0.00 2.44
694 870 1.543429 CCCTCTCTGGTTCGCTTTTGT 60.543 52.381 0.00 0.00 0.00 2.83
695 871 2.222027 CCTCTCTGGTTCGCTTTTGTT 58.778 47.619 0.00 0.00 0.00 2.83
696 872 2.031682 CCTCTCTGGTTCGCTTTTGTTG 60.032 50.000 0.00 0.00 0.00 3.33
697 873 2.614057 CTCTCTGGTTCGCTTTTGTTGT 59.386 45.455 0.00 0.00 0.00 3.32
698 874 3.013921 TCTCTGGTTCGCTTTTGTTGTT 58.986 40.909 0.00 0.00 0.00 2.83
699 875 4.193090 TCTCTGGTTCGCTTTTGTTGTTA 58.807 39.130 0.00 0.00 0.00 2.41
700 876 4.636648 TCTCTGGTTCGCTTTTGTTGTTAA 59.363 37.500 0.00 0.00 0.00 2.01
701 877 5.298276 TCTCTGGTTCGCTTTTGTTGTTAAT 59.702 36.000 0.00 0.00 0.00 1.40
702 878 5.277825 TCTGGTTCGCTTTTGTTGTTAATG 58.722 37.500 0.00 0.00 0.00 1.90
703 879 5.000012 TGGTTCGCTTTTGTTGTTAATGT 58.000 34.783 0.00 0.00 0.00 2.71
704 880 5.411781 TGGTTCGCTTTTGTTGTTAATGTT 58.588 33.333 0.00 0.00 0.00 2.71
705 881 5.517054 TGGTTCGCTTTTGTTGTTAATGTTC 59.483 36.000 0.00 0.00 0.00 3.18
706 882 5.517054 GGTTCGCTTTTGTTGTTAATGTTCA 59.483 36.000 0.00 0.00 0.00 3.18
707 883 6.035112 GGTTCGCTTTTGTTGTTAATGTTCAA 59.965 34.615 0.00 0.00 0.00 2.69
708 884 6.804534 TCGCTTTTGTTGTTAATGTTCAAG 57.195 33.333 0.00 0.00 0.00 3.02
746 922 2.630580 GACGGCCTCTTCCAGATAATCT 59.369 50.000 0.00 0.00 0.00 2.40
753 929 6.394809 GCCTCTTCCAGATAATCTAAGCTAC 58.605 44.000 0.00 0.00 0.00 3.58
755 931 7.394923 GCCTCTTCCAGATAATCTAAGCTACTA 59.605 40.741 0.00 0.00 0.00 1.82
756 932 9.474313 CCTCTTCCAGATAATCTAAGCTACTAT 57.526 37.037 0.00 0.00 0.00 2.12
759 935 9.781834 CTTCCAGATAATCTAAGCTACTATTCG 57.218 37.037 0.00 0.00 0.00 3.34
760 936 7.763356 TCCAGATAATCTAAGCTACTATTCGC 58.237 38.462 0.00 0.00 0.00 4.70
762 938 8.029522 CCAGATAATCTAAGCTACTATTCGCAA 58.970 37.037 0.00 0.00 0.00 4.85
764 940 9.982651 AGATAATCTAAGCTACTATTCGCAAAA 57.017 29.630 0.00 0.00 0.00 2.44
860 1041 3.883744 GACACCACCACCCAGCTCG 62.884 68.421 0.00 0.00 0.00 5.03
900 1103 3.147595 CTCCACTGCCCCGATCGA 61.148 66.667 18.66 0.00 0.00 3.59
901 1104 2.443952 TCCACTGCCCCGATCGAT 60.444 61.111 18.66 0.00 0.00 3.59
905 1108 1.762460 ACTGCCCCGATCGATTCCT 60.762 57.895 18.66 0.00 0.00 3.36
923 1126 1.581934 CTCTCGTCGCTCTCAGATCT 58.418 55.000 0.00 0.00 0.00 2.75
927 1130 1.791103 CGTCGCTCTCAGATCTCCCC 61.791 65.000 0.00 0.00 0.00 4.81
931 1134 1.714541 GCTCTCAGATCTCCCCATCA 58.285 55.000 0.00 0.00 0.00 3.07
932 1135 2.259012 GCTCTCAGATCTCCCCATCAT 58.741 52.381 0.00 0.00 0.00 2.45
934 1137 2.492881 CTCTCAGATCTCCCCATCATCG 59.507 54.545 0.00 0.00 0.00 3.84
981 1184 0.188834 CAAACCCAAACCCTACCCCA 59.811 55.000 0.00 0.00 0.00 4.96
990 1194 2.691252 CCTACCCCACCTCCCCAC 60.691 72.222 0.00 0.00 0.00 4.61
1082 1286 3.213402 CCTCGCCCTCGACTCCTC 61.213 72.222 0.00 0.00 40.21 3.71
1083 1287 3.213402 CTCGCCCTCGACTCCTCC 61.213 72.222 0.00 0.00 40.21 4.30
1084 1288 4.816984 TCGCCCTCGACTCCTCCC 62.817 72.222 0.00 0.00 40.21 4.30
1086 1290 3.462678 GCCCTCGACTCCTCCCAC 61.463 72.222 0.00 0.00 0.00 4.61
1087 1291 2.360980 CCCTCGACTCCTCCCACT 59.639 66.667 0.00 0.00 0.00 4.00
1088 1292 1.755008 CCCTCGACTCCTCCCACTC 60.755 68.421 0.00 0.00 0.00 3.51
1089 1293 1.755008 CCTCGACTCCTCCCACTCC 60.755 68.421 0.00 0.00 0.00 3.85
1090 1294 1.304952 CTCGACTCCTCCCACTCCT 59.695 63.158 0.00 0.00 0.00 3.69
1091 1295 0.750182 CTCGACTCCTCCCACTCCTC 60.750 65.000 0.00 0.00 0.00 3.71
1092 1296 2.115911 CGACTCCTCCCACTCCTCG 61.116 68.421 0.00 0.00 0.00 4.63
1093 1297 2.363147 ACTCCTCCCACTCCTCGC 60.363 66.667 0.00 0.00 0.00 5.03
1094 1298 3.151022 CTCCTCCCACTCCTCGCC 61.151 72.222 0.00 0.00 0.00 5.54
1095 1299 4.779733 TCCTCCCACTCCTCGCCC 62.780 72.222 0.00 0.00 0.00 6.13
1141 1345 4.465446 CGCCCTCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1142 1346 2.041265 GCCCTCCTCCTCCTCCAA 59.959 66.667 0.00 0.00 0.00 3.53
1143 1347 2.371259 GCCCTCCTCCTCCTCCAAC 61.371 68.421 0.00 0.00 0.00 3.77
1144 1348 2.060980 CCCTCCTCCTCCTCCAACG 61.061 68.421 0.00 0.00 0.00 4.10
1145 1349 2.060980 CCTCCTCCTCCTCCAACGG 61.061 68.421 0.00 0.00 0.00 4.44
1148 1443 4.821589 CTCCTCCTCCAACGGCGC 62.822 72.222 6.90 0.00 0.00 6.53
1734 2184 4.875713 AATGCCGCCATCCCGACC 62.876 66.667 0.00 0.00 0.00 4.79
1812 2262 2.961768 GTCAATGGGTTGGTGGCG 59.038 61.111 0.00 0.00 35.99 5.69
1887 2337 1.447489 CAGGCTCGAGGACTTGCAG 60.447 63.158 15.58 0.00 0.00 4.41
1918 2368 2.126307 CGACGTCTCAGCAGGTGG 60.126 66.667 14.70 0.00 0.00 4.61
1937 2387 2.785868 GTGTGCCACCATCATCTCC 58.214 57.895 0.00 0.00 0.00 3.71
1960 2410 4.101585 CCTTGCTTCCCAGACATAGTATCA 59.898 45.833 0.00 0.00 0.00 2.15
1961 2411 5.221803 CCTTGCTTCCCAGACATAGTATCAT 60.222 44.000 0.00 0.00 0.00 2.45
1962 2412 5.894298 TGCTTCCCAGACATAGTATCATT 57.106 39.130 0.00 0.00 0.00 2.57
1984 2434 9.710900 TCATTATTATCGTGCATAGACAATCTT 57.289 29.630 2.57 0.00 0.00 2.40
1992 2442 7.712797 TCGTGCATAGACAATCTTCACTATAA 58.287 34.615 0.00 0.00 0.00 0.98
1995 2445 9.098355 GTGCATAGACAATCTTCACTATAACAA 57.902 33.333 0.00 0.00 0.00 2.83
2002 2452 8.494016 ACAATCTTCACTATAACAAGTTAGGC 57.506 34.615 0.00 0.00 0.00 3.93
2093 2543 6.487689 AGCTGTTACTTGCTTCATACTTTC 57.512 37.500 0.00 0.00 35.86 2.62
2116 2566 8.752005 TTCATCACCTAGGGAAAATCTAATTG 57.248 34.615 14.81 0.00 0.00 2.32
2457 2907 4.762251 GTGGTTATGATCCCTGGCTATTTC 59.238 45.833 0.00 0.00 0.00 2.17
2631 3081 4.067896 TGATCTGTTGGAAAGTTCTGAGC 58.932 43.478 0.00 0.00 0.00 4.26
2688 3138 0.242825 CATTTGTGTGCAGAGGGCTG 59.757 55.000 0.00 0.00 45.15 4.85
2701 3151 0.407139 AGGGCTGCAAATCTTCTGGT 59.593 50.000 0.50 0.00 0.00 4.00
2793 3243 5.294060 GCCAACAAAGAACAAACATGAACAT 59.706 36.000 0.00 0.00 0.00 2.71
2802 3252 8.225603 AGAACAAACATGAACATACTTTCAGT 57.774 30.769 0.00 0.00 38.87 3.41
2917 3367 5.040635 TCTGGTTTGCGAAAGAATGAAAAC 58.959 37.500 0.00 0.00 0.00 2.43
2919 3369 5.415221 TGGTTTGCGAAAGAATGAAAACTT 58.585 33.333 0.00 0.00 0.00 2.66
2936 3386 8.266392 TGAAAACTTAGTTTACTTTTCCGTGA 57.734 30.769 10.97 0.00 34.43 4.35
2953 3403 2.754472 GTGAAGTTGACAAATTGGCCC 58.246 47.619 5.47 0.00 0.00 5.80
2957 3407 1.545582 AGTTGACAAATTGGCCCATCG 59.454 47.619 0.00 0.00 0.00 3.84
3023 3473 2.449518 TCTTGGGGCCACTGGTCA 60.450 61.111 6.53 0.00 0.00 4.02
3120 3570 9.231297 GCAACATATGGTATTCACCTTATATGT 57.769 33.333 7.80 11.29 46.43 2.29
3190 3803 3.056678 TGCCTCCAAAATAGTGCAATGTG 60.057 43.478 0.00 0.00 0.00 3.21
3196 3809 6.815089 TCCAAAATAGTGCAATGTGAAGTTT 58.185 32.000 0.00 0.00 0.00 2.66
3293 3921 4.385825 TGAAACGCCTATTCTGTTCTTGT 58.614 39.130 0.00 0.00 0.00 3.16
3502 4130 4.034510 GCAACATGTAATTCCGAGAGAAGG 59.965 45.833 0.00 0.00 38.07 3.46
3553 4181 2.564771 TCTGTTGTCAAGTTCAGCAGG 58.435 47.619 8.07 0.00 41.87 4.85
3649 4277 1.497161 ACTCCCTCCGTCCCTAAATG 58.503 55.000 0.00 0.00 0.00 2.32
3843 4472 6.861065 TGGTCAAACTTAGAAGACATTGAC 57.139 37.500 19.89 19.89 41.32 3.18
3887 4516 1.965414 TCTATTTGGGCACAGGGAGA 58.035 50.000 0.00 0.00 0.00 3.71
4123 4753 1.308998 GTATTGGGCAGGAATGGACG 58.691 55.000 0.00 0.00 0.00 4.79
4188 4818 5.117406 AGAGAAGGAGTGAAAAACCAAGT 57.883 39.130 0.00 0.00 0.00 3.16
4359 5022 5.164954 TGGTTTATTAATGAAAACTGGCGC 58.835 37.500 0.00 0.00 36.17 6.53
4360 5023 5.164954 GGTTTATTAATGAAAACTGGCGCA 58.835 37.500 10.83 0.00 36.17 6.09
4361 5024 5.061684 GGTTTATTAATGAAAACTGGCGCAC 59.938 40.000 10.83 0.00 36.17 5.34
4362 5025 3.932545 ATTAATGAAAACTGGCGCACA 57.067 38.095 10.83 3.75 0.00 4.57
4373 5036 3.658351 CTGGCGCACAGTTATAGTTTC 57.342 47.619 10.83 0.00 42.42 2.78
4374 5037 3.262420 CTGGCGCACAGTTATAGTTTCT 58.738 45.455 10.83 0.00 42.42 2.52
4375 5038 4.430007 CTGGCGCACAGTTATAGTTTCTA 58.570 43.478 10.83 0.00 42.42 2.10
4376 5039 4.823157 TGGCGCACAGTTATAGTTTCTAA 58.177 39.130 10.83 0.00 0.00 2.10
4377 5040 5.424757 TGGCGCACAGTTATAGTTTCTAAT 58.575 37.500 10.83 0.00 0.00 1.73
4378 5041 5.878116 TGGCGCACAGTTATAGTTTCTAATT 59.122 36.000 10.83 0.00 0.00 1.40
4379 5042 6.373216 TGGCGCACAGTTATAGTTTCTAATTT 59.627 34.615 10.83 0.00 0.00 1.82
4380 5043 6.905609 GGCGCACAGTTATAGTTTCTAATTTC 59.094 38.462 10.83 0.00 0.00 2.17
4381 5044 7.201617 GGCGCACAGTTATAGTTTCTAATTTCT 60.202 37.037 10.83 0.00 0.00 2.52
4382 5045 8.175716 GCGCACAGTTATAGTTTCTAATTTCTT 58.824 33.333 0.30 0.00 0.00 2.52
4450 5219 7.734924 TGCTAGCATAATTGTCCTAAAGATG 57.265 36.000 14.93 0.00 0.00 2.90
4518 5288 7.043590 GCATGAGTAGCATATTTTTGAAGCTTG 60.044 37.037 2.10 0.00 34.82 4.01
4886 5827 7.941919 AGTCTTCAATTTTGTAAGAGTTTCCC 58.058 34.615 0.00 0.00 30.76 3.97
4890 5831 9.377312 CTTCAATTTTGTAAGAGTTTCCCAAAA 57.623 29.630 0.00 0.00 38.79 2.44
4898 5839 9.771534 TTGTAAGAGTTTCCCAAAATTAAATGG 57.228 29.630 0.00 0.00 36.42 3.16
5203 6146 1.165270 CTTGACCCCTAAGCAAACGG 58.835 55.000 0.00 0.00 0.00 4.44
5397 6342 5.730550 TCGGCTTGTGTTATTACTCTCAAT 58.269 37.500 0.00 0.00 0.00 2.57
5414 6359 8.076910 ACTCTCAATCTGAAATAGACTGTGAT 57.923 34.615 0.00 0.00 35.43 3.06
5474 6419 0.321919 CATGGACACCACCTGGACAG 60.322 60.000 0.00 0.00 35.80 3.51
5716 6670 2.747855 CAACTTGGAGGAGCGGCC 60.748 66.667 0.00 0.00 0.00 6.13
6251 7255 2.066999 GGATCTCCTGGACCGCCTT 61.067 63.158 0.00 0.00 34.31 4.35
6624 7640 4.585879 CTTACTTAACCCCTAAGCAAGCA 58.414 43.478 0.00 0.00 40.78 3.91
6700 7718 9.297586 ACGTACTCTAACAATTACATATGTGTG 57.702 33.333 18.81 14.83 39.39 3.82
6701 7719 9.297586 CGTACTCTAACAATTACATATGTGTGT 57.702 33.333 18.81 15.43 39.39 3.72
6739 7757 4.776349 ACATGTATTTTCAGGGTATGCGA 58.224 39.130 0.00 0.00 0.00 5.10
6742 7760 3.619483 TGTATTTTCAGGGTATGCGAACG 59.381 43.478 0.00 0.00 0.00 3.95
6748 7766 0.179084 AGGGTATGCGAACGATGGTG 60.179 55.000 0.00 0.00 0.00 4.17
6759 7777 1.156736 ACGATGGTGCAAACTGTAGC 58.843 50.000 0.00 0.00 0.00 3.58
6760 7778 0.095245 CGATGGTGCAAACTGTAGCG 59.905 55.000 0.00 0.00 33.14 4.26
6789 7808 3.433306 TGAGTTCGAAAATGGGTGGAT 57.567 42.857 0.00 0.00 0.00 3.41
6792 7811 3.081804 AGTTCGAAAATGGGTGGATGTC 58.918 45.455 0.00 0.00 0.00 3.06
6801 7820 3.433306 TGGGTGGATGTCGATTTCTTT 57.567 42.857 0.00 0.00 0.00 2.52
6803 7822 4.148838 TGGGTGGATGTCGATTTCTTTTT 58.851 39.130 0.00 0.00 0.00 1.94
6827 7847 5.280654 AGAGTTGGCACATCAATTTTTGT 57.719 34.783 0.00 0.00 39.30 2.83
6839 7859 3.075283 TCAATTTTTGTAGGCCTCTGGGA 59.925 43.478 9.68 0.00 33.58 4.37
6853 7873 1.351017 TCTGGGAATGTTGGGAGTGTC 59.649 52.381 0.00 0.00 0.00 3.67
6858 7878 2.554032 GGAATGTTGGGAGTGTCTGTTG 59.446 50.000 0.00 0.00 0.00 3.33
6910 7932 8.197439 CGAAAGAATTATAATTTTGCCCTTCCT 58.803 33.333 11.92 0.00 0.00 3.36
6911 7933 9.890629 GAAAGAATTATAATTTTGCCCTTCCTT 57.109 29.630 11.92 5.01 0.00 3.36
7015 8039 7.707624 ATTGAGATGCTGAAAGGATTTGTTA 57.292 32.000 0.00 0.00 45.52 2.41
7063 8087 8.023128 GCACTATTTTGACTATGAAATGTGTGT 58.977 33.333 0.00 0.00 35.69 3.72
7161 8185 3.897239 TGCTAATATGTGGGGAAAGGTG 58.103 45.455 0.00 0.00 0.00 4.00
7175 8199 3.339141 GAAAGGTGGCAGAGGAAACTAG 58.661 50.000 0.00 0.00 44.43 2.57
7225 8249 0.597568 GCATGCAGCTTTGGTGTACA 59.402 50.000 14.21 0.00 41.15 2.90
7226 8250 1.401931 GCATGCAGCTTTGGTGTACAG 60.402 52.381 14.21 0.00 41.15 2.74
7227 8251 1.881973 CATGCAGCTTTGGTGTACAGT 59.118 47.619 0.00 0.00 33.19 3.55
7459 8485 2.154462 CTCTCTTGCCACGGTGAAATT 58.846 47.619 10.28 0.00 0.00 1.82
7545 8584 4.025858 GCTGACTGGGCTGGCTGA 62.026 66.667 0.00 0.00 0.00 4.26
7603 8643 1.955778 CATTTGGAGACCACAGTTGCA 59.044 47.619 0.00 0.00 30.78 4.08
7629 8671 2.545526 TGCACTTTTCTTCTTCTCTGCG 59.454 45.455 0.00 0.00 0.00 5.18
7635 8677 0.809385 TCTTCTTCTCTGCGTACCCG 59.191 55.000 0.00 0.00 37.07 5.28
7642 8684 2.435938 CTGCGTACCCGTTGCCAT 60.436 61.111 0.00 0.00 36.15 4.40
7667 8709 1.689273 GGGAGTTGCGTGATATCTCCT 59.311 52.381 3.98 0.00 42.76 3.69
7672 8714 2.088104 TGCGTGATATCTCCTCCCTT 57.912 50.000 3.98 0.00 0.00 3.95
7676 8718 4.020543 GCGTGATATCTCCTCCCTTCTAT 58.979 47.826 3.98 0.00 0.00 1.98
7678 8720 5.046950 GCGTGATATCTCCTCCCTTCTATTT 60.047 44.000 3.98 0.00 0.00 1.40
7679 8721 6.626302 CGTGATATCTCCTCCCTTCTATTTC 58.374 44.000 3.98 0.00 0.00 2.17
7680 8722 6.350612 CGTGATATCTCCTCCCTTCTATTTCC 60.351 46.154 3.98 0.00 0.00 3.13
7729 8882 1.078848 GCGGCTGAGGAGTGTTCAT 60.079 57.895 0.00 0.00 0.00 2.57
7734 8887 2.286872 GCTGAGGAGTGTTCATCCATG 58.713 52.381 0.00 0.00 39.47 3.66
7736 8889 1.561076 TGAGGAGTGTTCATCCATGGG 59.439 52.381 13.02 0.00 39.47 4.00
7755 8908 1.276989 GGAATCCTACCACCGTCACAA 59.723 52.381 0.00 0.00 0.00 3.33
7813 8968 8.099364 TCTTTTGCTAGTTTTGATCGAAATCT 57.901 30.769 11.31 11.94 32.75 2.40
7819 8974 7.119699 TGCTAGTTTTGATCGAAATCTCACAAT 59.880 33.333 11.31 0.00 32.75 2.71
7823 8978 8.971321 AGTTTTGATCGAAATCTCACAATTTTG 58.029 29.630 11.31 0.00 33.17 2.44
7826 8981 5.183713 TGATCGAAATCTCACAATTTTGCCT 59.816 36.000 0.00 0.00 32.32 4.75
7827 8982 4.797471 TCGAAATCTCACAATTTTGCCTG 58.203 39.130 0.00 0.00 32.32 4.85
7828 8983 4.278170 TCGAAATCTCACAATTTTGCCTGT 59.722 37.500 0.00 0.00 32.32 4.00
7871 9026 6.371809 AACATTTTAGACGAAAAGCACTGA 57.628 33.333 0.00 0.00 40.34 3.41
7918 9073 0.968405 TTGAAGCTCCAAATGGCCAC 59.032 50.000 8.16 0.00 34.44 5.01
7968 9128 1.492599 TCCATCACCACAACCACAAGA 59.507 47.619 0.00 0.00 0.00 3.02
7969 9129 2.092158 TCCATCACCACAACCACAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
7970 9130 2.294233 CCATCACCACAACCACAAGAAG 59.706 50.000 0.00 0.00 0.00 2.85
7972 9132 3.576078 TCACCACAACCACAAGAAGAT 57.424 42.857 0.00 0.00 0.00 2.40
7973 9133 3.213506 TCACCACAACCACAAGAAGATG 58.786 45.455 0.00 0.00 0.00 2.90
7974 9134 2.294233 CACCACAACCACAAGAAGATGG 59.706 50.000 0.00 0.00 42.13 3.51
7975 9135 1.270550 CCACAACCACAAGAAGATGGC 59.729 52.381 0.00 0.00 39.84 4.40
7976 9136 2.233271 CACAACCACAAGAAGATGGCT 58.767 47.619 0.00 0.00 39.84 4.75
7977 9137 3.411446 CACAACCACAAGAAGATGGCTA 58.589 45.455 0.00 0.00 39.84 3.93
7978 9138 4.012374 CACAACCACAAGAAGATGGCTAT 58.988 43.478 0.00 0.00 39.84 2.97
7979 9139 4.095483 CACAACCACAAGAAGATGGCTATC 59.905 45.833 0.99 0.99 39.84 2.08
7980 9140 4.263462 ACAACCACAAGAAGATGGCTATCA 60.263 41.667 13.04 0.00 39.84 2.15
7981 9141 4.574674 ACCACAAGAAGATGGCTATCAA 57.425 40.909 13.04 0.00 39.84 2.57
7982 9142 4.521146 ACCACAAGAAGATGGCTATCAAG 58.479 43.478 13.04 0.00 39.84 3.02
7983 9143 3.881688 CCACAAGAAGATGGCTATCAAGG 59.118 47.826 13.04 0.00 35.70 3.61
7984 9144 4.521146 CACAAGAAGATGGCTATCAAGGT 58.479 43.478 13.04 0.47 35.70 3.50
7985 9145 4.574013 CACAAGAAGATGGCTATCAAGGTC 59.426 45.833 13.04 4.21 35.70 3.85
7986 9146 4.225942 ACAAGAAGATGGCTATCAAGGTCA 59.774 41.667 13.04 0.00 35.70 4.02
7999 9159 3.587498 TCAAGGTCAAGGGAAGAAGAGA 58.413 45.455 0.00 0.00 0.00 3.10
8000 9160 4.171234 TCAAGGTCAAGGGAAGAAGAGAT 58.829 43.478 0.00 0.00 0.00 2.75
8001 9161 4.599241 TCAAGGTCAAGGGAAGAAGAGATT 59.401 41.667 0.00 0.00 0.00 2.40
8002 9162 5.073691 TCAAGGTCAAGGGAAGAAGAGATTT 59.926 40.000 0.00 0.00 0.00 2.17
8003 9163 5.590976 AGGTCAAGGGAAGAAGAGATTTT 57.409 39.130 0.00 0.00 0.00 1.82
8004 9164 5.565509 AGGTCAAGGGAAGAAGAGATTTTC 58.434 41.667 0.00 0.00 0.00 2.29
8033 9193 2.607187 CCTACGCACAAGAGATCGTTT 58.393 47.619 0.00 0.00 36.50 3.60
8034 9194 2.345641 CCTACGCACAAGAGATCGTTTG 59.654 50.000 9.73 9.73 36.50 2.93
8172 9332 0.393537 CTCATCACCAAGCCCCTCAC 60.394 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.028112 TGCAGCTATTCGGACTTCACTT 60.028 45.455 0.00 0.00 0.00 3.16
1 2 1.550524 TGCAGCTATTCGGACTTCACT 59.449 47.619 0.00 0.00 0.00 3.41
4 5 2.545946 GGATTGCAGCTATTCGGACTTC 59.454 50.000 0.00 0.00 0.00 3.01
8 9 1.762370 TCAGGATTGCAGCTATTCGGA 59.238 47.619 0.00 0.00 0.00 4.55
9 10 2.141517 CTCAGGATTGCAGCTATTCGG 58.858 52.381 0.00 0.00 0.00 4.30
10 11 2.141517 CCTCAGGATTGCAGCTATTCG 58.858 52.381 0.00 0.00 0.00 3.34
11 12 1.878734 GCCTCAGGATTGCAGCTATTC 59.121 52.381 0.00 0.00 0.00 1.75
12 13 1.493871 AGCCTCAGGATTGCAGCTATT 59.506 47.619 0.00 0.00 32.70 1.73
13 14 1.138568 AGCCTCAGGATTGCAGCTAT 58.861 50.000 0.00 0.00 32.70 2.97
14 15 0.179702 CAGCCTCAGGATTGCAGCTA 59.820 55.000 0.00 0.00 33.03 3.32
15 16 1.077644 CAGCCTCAGGATTGCAGCT 60.078 57.895 0.00 0.00 34.12 4.24
16 17 2.772691 GCAGCCTCAGGATTGCAGC 61.773 63.158 14.12 0.00 35.75 5.25
17 18 1.378119 TGCAGCCTCAGGATTGCAG 60.378 57.895 16.97 0.00 38.95 4.41
18 19 1.378119 CTGCAGCCTCAGGATTGCA 60.378 57.895 19.06 19.06 40.57 4.08
19 20 0.465824 ATCTGCAGCCTCAGGATTGC 60.466 55.000 9.47 12.52 36.07 3.56
20 21 2.924757 TATCTGCAGCCTCAGGATTG 57.075 50.000 9.47 0.00 34.91 2.67
21 22 3.420300 CATATCTGCAGCCTCAGGATT 57.580 47.619 9.47 0.00 34.91 3.01
36 37 7.652909 GCAGATGGAGTATCAGATAAGCATATC 59.347 40.741 0.56 0.56 38.31 1.63
37 38 7.125356 TGCAGATGGAGTATCAGATAAGCATAT 59.875 37.037 0.00 0.00 38.31 1.78
38 39 6.438425 TGCAGATGGAGTATCAGATAAGCATA 59.562 38.462 0.00 0.00 38.31 3.14
39 40 5.247792 TGCAGATGGAGTATCAGATAAGCAT 59.752 40.000 0.00 0.00 38.31 3.79
40 41 4.590222 TGCAGATGGAGTATCAGATAAGCA 59.410 41.667 0.00 0.00 38.31 3.91
41 42 5.144692 TGCAGATGGAGTATCAGATAAGC 57.855 43.478 0.00 0.00 38.31 3.09
42 43 6.757237 AGTTGCAGATGGAGTATCAGATAAG 58.243 40.000 0.00 0.00 38.31 1.73
43 44 6.737720 AGTTGCAGATGGAGTATCAGATAA 57.262 37.500 0.00 0.00 38.31 1.75
44 45 6.737720 AAGTTGCAGATGGAGTATCAGATA 57.262 37.500 0.00 0.00 38.31 1.98
45 46 5.627182 AAGTTGCAGATGGAGTATCAGAT 57.373 39.130 0.00 0.00 38.31 2.90
46 47 6.544928 TTAAGTTGCAGATGGAGTATCAGA 57.455 37.500 0.00 0.00 38.31 3.27
47 48 8.147058 AGTATTAAGTTGCAGATGGAGTATCAG 58.853 37.037 0.00 0.00 38.31 2.90
48 49 8.023021 AGTATTAAGTTGCAGATGGAGTATCA 57.977 34.615 0.00 0.00 38.31 2.15
52 53 9.988815 CTTATAGTATTAAGTTGCAGATGGAGT 57.011 33.333 0.00 0.00 0.00 3.85
54 55 9.982651 GTCTTATAGTATTAAGTTGCAGATGGA 57.017 33.333 0.00 0.00 32.21 3.41
55 56 9.764363 TGTCTTATAGTATTAAGTTGCAGATGG 57.236 33.333 0.00 0.00 32.21 3.51
108 109 8.035394 TCTGCTCCTTCTGTAACTTAATGTAAG 58.965 37.037 0.00 0.00 41.51 2.34
109 110 7.903145 TCTGCTCCTTCTGTAACTTAATGTAA 58.097 34.615 0.00 0.00 0.00 2.41
110 111 7.476540 TCTGCTCCTTCTGTAACTTAATGTA 57.523 36.000 0.00 0.00 0.00 2.29
111 112 6.360370 TCTGCTCCTTCTGTAACTTAATGT 57.640 37.500 0.00 0.00 0.00 2.71
112 113 9.202273 GATATCTGCTCCTTCTGTAACTTAATG 57.798 37.037 0.00 0.00 0.00 1.90
113 114 8.928448 TGATATCTGCTCCTTCTGTAACTTAAT 58.072 33.333 3.98 0.00 0.00 1.40
114 115 8.306313 TGATATCTGCTCCTTCTGTAACTTAA 57.694 34.615 3.98 0.00 0.00 1.85
115 116 7.898014 TGATATCTGCTCCTTCTGTAACTTA 57.102 36.000 3.98 0.00 0.00 2.24
116 117 6.798427 TGATATCTGCTCCTTCTGTAACTT 57.202 37.500 3.98 0.00 0.00 2.66
117 118 6.326064 ACATGATATCTGCTCCTTCTGTAACT 59.674 38.462 0.00 0.00 0.00 2.24
118 119 6.520272 ACATGATATCTGCTCCTTCTGTAAC 58.480 40.000 0.00 0.00 0.00 2.50
119 120 6.737720 ACATGATATCTGCTCCTTCTGTAA 57.262 37.500 0.00 0.00 0.00 2.41
120 121 6.737720 AACATGATATCTGCTCCTTCTGTA 57.262 37.500 0.00 0.00 0.00 2.74
121 122 5.627182 AACATGATATCTGCTCCTTCTGT 57.373 39.130 0.00 0.00 0.00 3.41
122 123 6.053650 TCAAACATGATATCTGCTCCTTCTG 58.946 40.000 0.00 0.00 0.00 3.02
123 124 6.244552 TCAAACATGATATCTGCTCCTTCT 57.755 37.500 0.00 0.00 0.00 2.85
124 125 8.613060 TTATCAAACATGATATCTGCTCCTTC 57.387 34.615 0.00 0.00 31.65 3.46
125 126 9.011095 CATTATCAAACATGATATCTGCTCCTT 57.989 33.333 0.00 0.00 31.65 3.36
126 127 8.162085 ACATTATCAAACATGATATCTGCTCCT 58.838 33.333 0.00 0.00 31.65 3.69
127 128 8.332996 ACATTATCAAACATGATATCTGCTCC 57.667 34.615 0.00 0.00 31.65 4.70
136 137 9.426837 CAAACCAGAAACATTATCAAACATGAT 57.573 29.630 0.00 0.00 0.00 2.45
137 138 7.384660 GCAAACCAGAAACATTATCAAACATGA 59.615 33.333 0.00 0.00 0.00 3.07
138 139 7.385752 AGCAAACCAGAAACATTATCAAACATG 59.614 33.333 0.00 0.00 0.00 3.21
185 186 2.358737 CGTTGACCAGGTGAGGGC 60.359 66.667 0.00 0.00 37.13 5.19
187 188 4.675404 GTCGTTGACCAGGTGAGG 57.325 61.111 0.00 0.00 0.00 3.86
205 206 1.268032 CCAACTAATTTAGCCGCTGCG 60.268 52.381 16.34 16.34 44.33 5.18
206 207 1.743394 ACCAACTAATTTAGCCGCTGC 59.257 47.619 2.16 0.00 37.95 5.25
254 255 2.896685 GCTCATCCTGGCTAGTCTGTAT 59.103 50.000 0.00 0.00 0.00 2.29
286 289 7.958053 TCAGTATCATTGCATCTGTATTCTG 57.042 36.000 0.00 0.00 0.00 3.02
294 297 6.755141 GCACAATTTTCAGTATCATTGCATCT 59.245 34.615 0.00 0.00 30.96 2.90
304 307 6.803320 CGTCAAATGAGCACAATTTTCAGTAT 59.197 34.615 0.00 0.00 0.00 2.12
315 318 6.257849 GGTATAGAATTCGTCAAATGAGCACA 59.742 38.462 0.00 0.00 0.00 4.57
316 319 6.257849 TGGTATAGAATTCGTCAAATGAGCAC 59.742 38.462 0.00 0.00 0.00 4.40
329 332 4.537015 GCGGCACAAATGGTATAGAATTC 58.463 43.478 0.00 0.00 0.00 2.17
336 339 1.666209 GCAGGCGGCACAAATGGTAT 61.666 55.000 13.08 0.00 43.97 2.73
356 359 5.121811 TGTTTTGCCAAACATATGCAAGTT 58.878 33.333 11.77 0.00 46.06 2.66
370 373 6.189859 AGATAGAGATTGGATTGTTTTGCCA 58.810 36.000 0.00 0.00 0.00 4.92
383 386 6.922957 GCTTCAGGTAGACAAGATAGAGATTG 59.077 42.308 0.00 0.00 0.00 2.67
413 416 1.129058 ACACAAAGGGGTCGAGACTT 58.871 50.000 3.09 0.00 0.00 3.01
419 422 1.196808 CGATCAAACACAAAGGGGTCG 59.803 52.381 0.00 0.00 0.00 4.79
420 423 2.484264 CTCGATCAAACACAAAGGGGTC 59.516 50.000 0.00 0.00 0.00 4.46
421 424 2.504367 CTCGATCAAACACAAAGGGGT 58.496 47.619 0.00 0.00 0.00 4.95
423 426 2.154462 AGCTCGATCAAACACAAAGGG 58.846 47.619 0.00 0.00 0.00 3.95
447 450 5.950023 ACAAAGGTACGAGAGATATAGGGA 58.050 41.667 0.00 0.00 0.00 4.20
451 454 7.230108 CCTACCAACAAAGGTACGAGAGATATA 59.770 40.741 0.00 0.00 43.08 0.86
452 455 5.934402 ACCAACAAAGGTACGAGAGATAT 57.066 39.130 0.00 0.00 40.98 1.63
453 456 5.359009 CCTACCAACAAAGGTACGAGAGATA 59.641 44.000 0.00 0.00 43.08 1.98
516 520 6.234177 ACCAAGATTGAACTCCAGTCTAAAG 58.766 40.000 0.00 0.00 40.44 1.85
533 537 3.456277 CCTCCAGTAGCCTTTACCAAGAT 59.544 47.826 0.00 0.00 30.57 2.40
562 569 3.494045 TCTCTGTGTGCGACAAGATAG 57.506 47.619 0.00 0.00 32.80 2.08
564 571 2.802816 GTTTCTCTGTGTGCGACAAGAT 59.197 45.455 0.00 0.00 32.80 2.40
565 572 2.201732 GTTTCTCTGTGTGCGACAAGA 58.798 47.619 0.00 0.00 32.80 3.02
566 573 1.071239 CGTTTCTCTGTGTGCGACAAG 60.071 52.381 0.00 0.00 32.80 3.16
567 574 0.927537 CGTTTCTCTGTGTGCGACAA 59.072 50.000 0.00 0.00 32.80 3.18
568 575 1.487452 GCGTTTCTCTGTGTGCGACA 61.487 55.000 0.00 0.00 0.00 4.35
569 576 1.201825 GCGTTTCTCTGTGTGCGAC 59.798 57.895 0.00 0.00 0.00 5.19
585 759 0.732880 ATCGCGAATTCCCGATAGCG 60.733 55.000 22.92 18.54 41.86 4.26
588 762 2.035449 ACTTGATCGCGAATTCCCGATA 59.965 45.455 23.92 11.62 43.48 2.92
589 763 1.202533 ACTTGATCGCGAATTCCCGAT 60.203 47.619 24.06 24.06 45.82 4.18
590 764 0.174845 ACTTGATCGCGAATTCCCGA 59.825 50.000 15.24 16.84 37.91 5.14
591 765 1.787155 CTACTTGATCGCGAATTCCCG 59.213 52.381 15.24 6.16 0.00 5.14
592 766 2.822764 ACTACTTGATCGCGAATTCCC 58.177 47.619 15.24 0.58 0.00 3.97
593 767 3.734735 GGTACTACTTGATCGCGAATTCC 59.265 47.826 15.24 3.37 0.00 3.01
594 768 4.608951 AGGTACTACTTGATCGCGAATTC 58.391 43.478 15.24 8.03 36.02 2.17
595 769 4.650754 AGGTACTACTTGATCGCGAATT 57.349 40.909 15.24 0.00 36.02 2.17
596 770 4.650754 AAGGTACTACTTGATCGCGAAT 57.349 40.909 15.24 0.93 38.49 3.34
597 771 4.171005 CAAAGGTACTACTTGATCGCGAA 58.829 43.478 15.24 0.00 38.49 4.70
601 775 3.303495 CACGCAAAGGTACTACTTGATCG 59.697 47.826 0.00 0.00 38.49 3.69
611 785 1.203313 GACACGCACGCAAAGGTAC 59.797 57.895 0.00 0.00 0.00 3.34
612 786 2.304401 CGACACGCACGCAAAGGTA 61.304 57.895 0.00 0.00 0.00 3.08
679 855 4.966965 TTAACAACAAAAGCGAACCAGA 57.033 36.364 0.00 0.00 0.00 3.86
687 863 5.236263 CCCCTTGAACATTAACAACAAAAGC 59.764 40.000 0.00 0.00 0.00 3.51
688 864 5.236263 GCCCCTTGAACATTAACAACAAAAG 59.764 40.000 0.00 0.00 0.00 2.27
689 865 5.119694 GCCCCTTGAACATTAACAACAAAA 58.880 37.500 0.00 0.00 0.00 2.44
690 866 4.443598 GGCCCCTTGAACATTAACAACAAA 60.444 41.667 0.00 0.00 0.00 2.83
691 867 3.070302 GGCCCCTTGAACATTAACAACAA 59.930 43.478 0.00 0.00 0.00 2.83
692 868 2.630580 GGCCCCTTGAACATTAACAACA 59.369 45.455 0.00 0.00 0.00 3.33
693 869 2.028476 GGGCCCCTTGAACATTAACAAC 60.028 50.000 12.23 0.00 0.00 3.32
694 870 2.252714 GGGCCCCTTGAACATTAACAA 58.747 47.619 12.23 0.00 0.00 2.83
695 871 1.148027 TGGGCCCCTTGAACATTAACA 59.852 47.619 22.27 0.00 0.00 2.41
696 872 1.824852 CTGGGCCCCTTGAACATTAAC 59.175 52.381 22.27 0.00 0.00 2.01
697 873 1.272985 CCTGGGCCCCTTGAACATTAA 60.273 52.381 22.27 0.00 0.00 1.40
698 874 0.334676 CCTGGGCCCCTTGAACATTA 59.665 55.000 22.27 0.00 0.00 1.90
699 875 1.079073 CCTGGGCCCCTTGAACATT 59.921 57.895 22.27 0.00 0.00 2.71
700 876 2.169810 ACCTGGGCCCCTTGAACAT 61.170 57.895 22.27 0.00 0.00 2.71
701 877 2.780924 ACCTGGGCCCCTTGAACA 60.781 61.111 22.27 0.00 0.00 3.18
702 878 2.283173 CACCTGGGCCCCTTGAAC 60.283 66.667 22.27 0.00 0.00 3.18
703 879 3.589542 CCACCTGGGCCCCTTGAA 61.590 66.667 22.27 0.00 0.00 2.69
765 941 7.078228 GCAGCTCGGATTATTATCGAATTTTT 58.922 34.615 0.00 0.00 0.00 1.94
767 943 5.122396 GGCAGCTCGGATTATTATCGAATTT 59.878 40.000 0.00 0.00 0.00 1.82
769 945 4.184629 GGCAGCTCGGATTATTATCGAAT 58.815 43.478 0.00 0.00 0.00 3.34
772 948 2.271800 GGGCAGCTCGGATTATTATCG 58.728 52.381 0.00 0.00 0.00 2.92
773 949 2.633488 GGGGCAGCTCGGATTATTATC 58.367 52.381 0.00 0.00 0.00 1.75
774 950 1.282157 GGGGGCAGCTCGGATTATTAT 59.718 52.381 0.00 0.00 0.00 1.28
775 951 0.690762 GGGGGCAGCTCGGATTATTA 59.309 55.000 0.00 0.00 0.00 0.98
776 952 1.062488 AGGGGGCAGCTCGGATTATT 61.062 55.000 0.00 0.00 0.00 1.40
860 1041 3.471806 GAAGGAGTCCGGAGCCCC 61.472 72.222 17.51 12.93 0.00 5.80
900 1103 1.021202 CTGAGAGCGACGAGAGGAAT 58.979 55.000 0.00 0.00 0.00 3.01
901 1104 0.036294 TCTGAGAGCGACGAGAGGAA 60.036 55.000 0.00 0.00 0.00 3.36
905 1108 1.577468 GAGATCTGAGAGCGACGAGA 58.423 55.000 0.00 0.00 0.00 4.04
923 1126 2.762043 TGGACGCGATGATGGGGA 60.762 61.111 15.93 0.00 0.00 4.81
927 1130 2.969238 GGGCTGGACGCGATGATG 60.969 66.667 15.93 0.00 40.44 3.07
947 1150 0.689745 GTTTGGGGGATTTAGGGGGC 60.690 60.000 0.00 0.00 0.00 5.80
1124 1328 3.984186 TTGGAGGAGGAGGAGGGCG 62.984 68.421 0.00 0.00 0.00 6.13
1125 1329 2.041265 TTGGAGGAGGAGGAGGGC 59.959 66.667 0.00 0.00 0.00 5.19
1126 1330 2.060980 CGTTGGAGGAGGAGGAGGG 61.061 68.421 0.00 0.00 0.00 4.30
1127 1331 2.060980 CCGTTGGAGGAGGAGGAGG 61.061 68.421 0.00 0.00 0.00 4.30
1128 1332 2.726351 GCCGTTGGAGGAGGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
1129 1333 2.683933 GCCGTTGGAGGAGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
1130 1334 4.148825 CGCCGTTGGAGGAGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
1131 1335 4.821589 GCGCCGTTGGAGGAGGAG 62.822 72.222 0.00 0.00 0.00 3.69
1647 2097 2.186125 CCCGGCTCGGTAAGGAAC 59.814 66.667 11.85 0.00 46.80 3.62
1695 2145 4.250305 GTGGTGGTCCAGTGCCGT 62.250 66.667 0.00 0.00 45.24 5.68
1755 2205 5.701224 TCCTTAAACATCCCAAACAAGTCT 58.299 37.500 0.00 0.00 0.00 3.24
1812 2262 4.681978 ACAGGCGGTGGCTTCGTC 62.682 66.667 0.00 0.00 35.88 4.20
1887 2337 3.418068 GTCGTGGTGAGCTGCTGC 61.418 66.667 7.01 7.62 40.05 5.25
1929 2379 1.493871 CTGGGAAGCAAGGGAGATGAT 59.506 52.381 0.00 0.00 0.00 2.45
1937 2387 4.101585 TGATACTATGTCTGGGAAGCAAGG 59.898 45.833 0.00 0.00 0.00 3.61
1960 2410 9.710900 TGAAGATTGTCTATGCACGATAATAAT 57.289 29.630 8.98 3.33 0.00 1.28
1961 2411 8.978539 GTGAAGATTGTCTATGCACGATAATAA 58.021 33.333 8.98 0.00 0.00 1.40
1962 2412 8.360390 AGTGAAGATTGTCTATGCACGATAATA 58.640 33.333 8.98 0.00 32.24 0.98
1984 2434 8.358148 GCTATACAGCCTAACTTGTTATAGTGA 58.642 37.037 0.00 0.00 42.37 3.41
2009 2459 5.157067 GGCTGATCTACTTTTGAACTTTGC 58.843 41.667 0.00 0.00 0.00 3.68
2030 2480 9.765795 ATGTTACTTAAGTTATATGAGACTGGC 57.234 33.333 14.49 0.00 0.00 4.85
2093 2543 6.015940 GGCAATTAGATTTTCCCTAGGTGATG 60.016 42.308 8.29 0.00 0.00 3.07
2116 2566 1.135689 CATGCACTAAGACCGTTTGGC 60.136 52.381 0.00 0.00 39.70 4.52
2274 2724 4.351192 GCATAAGAAATAAACACAGGGCG 58.649 43.478 0.00 0.00 0.00 6.13
2457 2907 4.082026 CCTGGGTTTGATCTAAAAAGGCTG 60.082 45.833 0.00 0.00 0.00 4.85
2528 2978 7.404671 AAACCTAAAACTATCAAATGCCGAT 57.595 32.000 0.00 0.00 0.00 4.18
2529 2979 6.827586 AAACCTAAAACTATCAAATGCCGA 57.172 33.333 0.00 0.00 0.00 5.54
2631 3081 1.202582 AGATGAACTGAACCGACCGAG 59.797 52.381 0.00 0.00 0.00 4.63
2688 3138 3.823304 ACAAGAGGAACCAGAAGATTTGC 59.177 43.478 0.00 0.00 0.00 3.68
2701 3151 5.928976 TGAAATGACTCAGAACAAGAGGAA 58.071 37.500 0.00 0.00 37.43 3.36
2772 3222 9.651913 AAAGTATGTTCATGTTTGTTCTTTGTT 57.348 25.926 0.00 0.00 0.00 2.83
2773 3223 9.301153 GAAAGTATGTTCATGTTTGTTCTTTGT 57.699 29.630 0.00 0.00 0.00 2.83
2774 3224 9.299963 TGAAAGTATGTTCATGTTTGTTCTTTG 57.700 29.630 0.00 0.00 32.56 2.77
2775 3225 9.520204 CTGAAAGTATGTTCATGTTTGTTCTTT 57.480 29.630 0.00 0.00 36.92 2.52
2802 3252 8.646900 GGTCCATATAGAAATTTTATTTGGCCA 58.353 33.333 0.00 0.00 32.74 5.36
2917 3367 7.849515 GTCAACTTCACGGAAAAGTAAACTAAG 59.150 37.037 0.62 0.00 35.96 2.18
2919 3369 6.817641 TGTCAACTTCACGGAAAAGTAAACTA 59.182 34.615 0.62 0.00 35.96 2.24
2936 3386 2.029110 CGATGGGCCAATTTGTCAACTT 60.029 45.455 11.89 0.00 0.00 2.66
2953 3403 4.106197 GTCTAGTAACACTGCTTCCGATG 58.894 47.826 0.00 0.00 0.00 3.84
2957 3407 2.416972 CGGGTCTAGTAACACTGCTTCC 60.417 54.545 0.00 0.00 0.00 3.46
3196 3809 9.461312 AGCACATTTGTATCTATTTACCAAGAA 57.539 29.630 0.00 0.00 0.00 2.52
3265 3892 4.246458 ACAGAATAGGCGTTTCAAGACTC 58.754 43.478 5.48 0.00 0.00 3.36
3293 3921 4.671377 GTTTCATGAAAACTGTGAGTGCA 58.329 39.130 22.07 0.00 43.30 4.57
3311 3939 6.868339 CCAGAACATACCATTCCAAAAGTTTC 59.132 38.462 0.00 0.00 0.00 2.78
3502 4130 0.727398 GTTGGATAACACCAGCTCGC 59.273 55.000 0.00 0.00 41.19 5.03
3553 4181 8.084684 ACTTCAGAATTTAATTTTGCCTGAGAC 58.915 33.333 3.67 0.00 31.86 3.36
3649 4277 5.818857 TCTTAACTGAATTTATACGCCACCC 59.181 40.000 0.00 0.00 0.00 4.61
4123 4753 6.951198 TCAATCCCTCTATCTTCTGATACCTC 59.049 42.308 0.00 0.00 34.32 3.85
4210 4840 6.857777 TCACAATTTTGGCAATTTACCTTG 57.142 33.333 0.00 2.08 0.00 3.61
4219 4849 7.215789 ACAATATCACTTCACAATTTTGGCAA 58.784 30.769 0.00 0.00 0.00 4.52
4310 4941 8.647143 TCCAATGAGAACATTTTTCAAACTTC 57.353 30.769 0.00 0.00 43.17 3.01
4314 4945 7.507829 ACCATCCAATGAGAACATTTTTCAAA 58.492 30.769 0.00 0.00 43.17 2.69
4367 5030 9.048446 ACGTGCAGTTAAAGAAATTAGAAACTA 57.952 29.630 0.00 0.00 0.00 2.24
4368 5031 7.927048 ACGTGCAGTTAAAGAAATTAGAAACT 58.073 30.769 0.00 0.00 0.00 2.66
4369 5032 7.322938 GGACGTGCAGTTAAAGAAATTAGAAAC 59.677 37.037 0.63 0.00 0.00 2.78
4370 5033 7.227910 AGGACGTGCAGTTAAAGAAATTAGAAA 59.772 33.333 10.52 0.00 0.00 2.52
4371 5034 6.708949 AGGACGTGCAGTTAAAGAAATTAGAA 59.291 34.615 10.52 0.00 0.00 2.10
4372 5035 6.228258 AGGACGTGCAGTTAAAGAAATTAGA 58.772 36.000 10.52 0.00 0.00 2.10
4373 5036 6.147164 TGAGGACGTGCAGTTAAAGAAATTAG 59.853 38.462 10.52 0.00 0.00 1.73
4374 5037 5.992829 TGAGGACGTGCAGTTAAAGAAATTA 59.007 36.000 10.52 0.00 0.00 1.40
4375 5038 4.819630 TGAGGACGTGCAGTTAAAGAAATT 59.180 37.500 10.52 0.00 0.00 1.82
4376 5039 4.385825 TGAGGACGTGCAGTTAAAGAAAT 58.614 39.130 10.52 0.00 0.00 2.17
4377 5040 3.799366 TGAGGACGTGCAGTTAAAGAAA 58.201 40.909 10.52 0.00 0.00 2.52
4378 5041 3.462483 TGAGGACGTGCAGTTAAAGAA 57.538 42.857 10.52 0.00 0.00 2.52
4379 5042 3.128349 GTTGAGGACGTGCAGTTAAAGA 58.872 45.455 10.52 0.00 0.00 2.52
4380 5043 2.223377 GGTTGAGGACGTGCAGTTAAAG 59.777 50.000 10.52 0.00 0.00 1.85
4381 5044 2.215196 GGTTGAGGACGTGCAGTTAAA 58.785 47.619 10.52 0.00 0.00 1.52
4382 5045 1.139256 TGGTTGAGGACGTGCAGTTAA 59.861 47.619 10.52 0.00 0.00 2.01
4383 5046 0.753867 TGGTTGAGGACGTGCAGTTA 59.246 50.000 10.52 0.00 0.00 2.24
4384 5047 0.107410 TTGGTTGAGGACGTGCAGTT 60.107 50.000 10.52 0.00 0.00 3.16
4385 5048 0.532862 CTTGGTTGAGGACGTGCAGT 60.533 55.000 10.52 0.00 0.00 4.40
4386 5049 0.532862 ACTTGGTTGAGGACGTGCAG 60.533 55.000 10.52 0.00 0.00 4.41
4387 5050 0.531974 GACTTGGTTGAGGACGTGCA 60.532 55.000 10.52 0.00 0.00 4.57
4388 5051 0.249911 AGACTTGGTTGAGGACGTGC 60.250 55.000 0.00 0.00 0.00 5.34
4450 5219 3.686241 TGTGCAGCTGTCACAAGAATATC 59.314 43.478 29.43 10.39 41.01 1.63
4518 5288 6.638468 GCAGCAATGCCTCTTATAATGTTTAC 59.362 38.462 0.00 0.00 0.00 2.01
4577 5347 6.515272 AATGACTTGACTTGAACAAACTGT 57.485 33.333 0.00 0.00 0.00 3.55
4768 5543 2.011122 AGAACTCGTCCCTCCTTTGA 57.989 50.000 0.00 0.00 0.00 2.69
4808 5748 9.719355 TCAACTAACACATTATATGCGGATTAT 57.281 29.630 0.00 0.00 0.00 1.28
4860 5801 8.414003 GGGAAACTCTTACAAAATTGAAGACTT 58.586 33.333 0.00 0.00 0.00 3.01
4861 5802 7.559897 TGGGAAACTCTTACAAAATTGAAGACT 59.440 33.333 0.00 0.00 0.00 3.24
4862 5803 7.712797 TGGGAAACTCTTACAAAATTGAAGAC 58.287 34.615 0.00 0.00 0.00 3.01
4874 5815 8.094548 AGCCATTTAATTTTGGGAAACTCTTAC 58.905 33.333 4.52 0.00 33.40 2.34
4883 5824 5.129155 CCTGATCAGCCATTTAATTTTGGGA 59.871 40.000 17.76 0.00 33.40 4.37
4886 5827 7.999679 TCTACCTGATCAGCCATTTAATTTTG 58.000 34.615 17.76 1.38 0.00 2.44
4890 5831 9.458727 CATAATCTACCTGATCAGCCATTTAAT 57.541 33.333 17.76 3.17 33.57 1.40
4898 5839 6.401394 TGCATACATAATCTACCTGATCAGC 58.599 40.000 17.76 1.38 33.57 4.26
5203 6146 9.887629 GTCTTAGGGTTAATTAGATATAAGGGC 57.112 37.037 8.51 0.00 0.00 5.19
5397 6342 9.453572 AAATAAAGCATCACAGTCTATTTCAGA 57.546 29.630 0.00 0.00 0.00 3.27
5414 6359 2.603412 CGTGCACGTCCAAAATAAAGCA 60.603 45.455 30.50 0.00 34.11 3.91
5474 6419 3.266510 TCCATACACATGCACTCCTTC 57.733 47.619 0.00 0.00 0.00 3.46
5570 6523 1.005037 AAAGTCTGCGACATCGGCA 60.005 52.632 3.08 1.27 40.23 5.69
5850 6804 0.104855 GCGTCCACATCCAGCAGATA 59.895 55.000 0.00 0.00 32.37 1.98
6094 7082 3.066190 GCTGCAGCTGCCATCCAA 61.066 61.111 34.64 14.99 41.18 3.53
6251 7255 1.374947 GTGCTGCAGGACCTAACCA 59.625 57.895 26.46 4.65 0.00 3.67
6609 7625 0.541998 GGGTTGCTTGCTTAGGGGTT 60.542 55.000 0.00 0.00 0.00 4.11
6739 7757 1.535462 GCTACAGTTTGCACCATCGTT 59.465 47.619 0.00 0.00 0.00 3.85
6742 7760 1.128692 GACGCTACAGTTTGCACCATC 59.871 52.381 0.00 0.00 0.00 3.51
6775 7793 1.732941 TCGACATCCACCCATTTTCG 58.267 50.000 0.00 0.00 0.00 3.46
6801 7820 7.768120 ACAAAAATTGATGTGCCAACTCTAAAA 59.232 29.630 0.00 0.00 0.00 1.52
6803 7822 6.815089 ACAAAAATTGATGTGCCAACTCTAA 58.185 32.000 0.00 0.00 0.00 2.10
6805 7824 5.280654 ACAAAAATTGATGTGCCAACTCT 57.719 34.783 0.00 0.00 0.00 3.24
6827 7847 0.918983 CCAACATTCCCAGAGGCCTA 59.081 55.000 4.42 0.00 0.00 3.93
6839 7859 1.956477 GCAACAGACACTCCCAACATT 59.044 47.619 0.00 0.00 0.00 2.71
6853 7873 4.057406 TGGTTCCAAAATTCAGCAACAG 57.943 40.909 0.00 0.00 0.00 3.16
6858 7878 4.176271 GCAGTATGGTTCCAAAATTCAGC 58.824 43.478 0.00 0.00 35.86 4.26
6901 7923 3.333680 AGAAGGTAAATGAAGGAAGGGCA 59.666 43.478 0.00 0.00 0.00 5.36
6910 7932 8.806429 TGCATTCAATAGAGAAGGTAAATGAA 57.194 30.769 0.00 0.00 32.30 2.57
6911 7933 7.500227 CCTGCATTCAATAGAGAAGGTAAATGA 59.500 37.037 0.00 0.00 32.30 2.57
7063 8087 0.880278 GACGCTGTTGCAGTTCCTGA 60.880 55.000 0.00 0.00 39.64 3.86
7161 8185 4.557097 GCGTATACTCTAGTTTCCTCTGCC 60.557 50.000 0.56 0.00 0.00 4.85
7175 8199 1.065102 TGCTCCTGTTCGCGTATACTC 59.935 52.381 5.77 0.00 0.00 2.59
7225 8249 9.643735 AAAATCCACTGCTATACTAGTACTACT 57.356 33.333 4.31 0.00 0.00 2.57
7226 8250 9.680315 CAAAATCCACTGCTATACTAGTACTAC 57.320 37.037 4.31 0.00 0.00 2.73
7227 8251 8.358148 GCAAAATCCACTGCTATACTAGTACTA 58.642 37.037 4.31 1.89 35.62 1.82
7459 8485 4.022416 ACGATGCAAACCAGATGCTAAAAA 60.022 37.500 0.00 0.00 44.14 1.94
7501 8540 1.166531 AGCGTGTGAAAGCTGGGTTC 61.167 55.000 0.00 0.00 42.82 3.62
7560 8599 9.851686 AATGCACATTTGGATAAGTAAGATAGA 57.148 29.630 0.00 0.00 31.38 1.98
7603 8643 5.008415 CAGAGAAGAAGAAAAGTGCATGTGT 59.992 40.000 0.00 0.00 0.00 3.72
7617 8659 0.526662 ACGGGTACGCAGAGAAGAAG 59.473 55.000 10.84 0.00 46.04 2.85
7629 8671 0.242555 CCAAACATGGCAACGGGTAC 59.757 55.000 0.00 0.00 42.51 3.34
7635 8677 1.873486 GCAACTCCCAAACATGGCAAC 60.873 52.381 0.00 0.00 0.00 4.17
7642 8684 2.552599 TATCACGCAACTCCCAAACA 57.447 45.000 0.00 0.00 0.00 2.83
7667 8709 2.438021 CCATCCACGGAAATAGAAGGGA 59.562 50.000 0.00 0.00 0.00 4.20
7672 8714 0.105964 CGGCCATCCACGGAAATAGA 59.894 55.000 2.24 0.00 0.00 1.98
7729 8882 1.518367 GGTGGTAGGATTCCCATGGA 58.482 55.000 15.22 0.00 32.32 3.41
7734 8887 0.177373 GTGACGGTGGTAGGATTCCC 59.823 60.000 0.00 0.00 0.00 3.97
7736 8889 2.754946 TTGTGACGGTGGTAGGATTC 57.245 50.000 0.00 0.00 0.00 2.52
7782 8935 7.226720 TCGATCAAAACTAGCAAAAGAGACTTT 59.773 33.333 0.00 0.00 0.00 2.66
7787 8940 8.233190 AGATTTCGATCAAAACTAGCAAAAGAG 58.767 33.333 0.00 0.00 0.00 2.85
7788 8941 8.099364 AGATTTCGATCAAAACTAGCAAAAGA 57.901 30.769 0.00 0.00 0.00 2.52
7789 8942 8.017373 TGAGATTTCGATCAAAACTAGCAAAAG 58.983 33.333 0.00 0.00 27.57 2.27
7806 8961 4.549458 ACAGGCAAAATTGTGAGATTTCG 58.451 39.130 0.00 0.00 0.00 3.46
7835 8990 5.118050 GTCTAAAATGTTTTAACTTGCGGGC 59.882 40.000 0.27 0.00 32.73 6.13
7871 9026 9.465985 AATTTTTCAAATAAAACCGTATGTCGT 57.534 25.926 0.00 0.00 37.94 4.34
7899 9054 0.968405 GTGGCCATTTGGAGCTTCAA 59.032 50.000 9.72 2.32 37.39 2.69
7901 9056 0.968405 TTGTGGCCATTTGGAGCTTC 59.032 50.000 9.72 0.00 37.39 3.86
7913 9068 4.815846 AGAATTTGAATTTGTGTTGTGGCC 59.184 37.500 0.00 0.00 0.00 5.36
7918 9073 9.520204 ACTCACTTAGAATTTGAATTTGTGTTG 57.480 29.630 0.00 0.00 0.00 3.33
7968 9128 3.117738 CCCTTGACCTTGATAGCCATCTT 60.118 47.826 0.00 0.00 31.93 2.40
7969 9129 2.441001 CCCTTGACCTTGATAGCCATCT 59.559 50.000 0.00 0.00 31.93 2.90
7970 9130 2.439507 TCCCTTGACCTTGATAGCCATC 59.560 50.000 0.00 0.00 0.00 3.51
7972 9132 1.965414 TCCCTTGACCTTGATAGCCA 58.035 50.000 0.00 0.00 0.00 4.75
7973 9133 2.505819 TCTTCCCTTGACCTTGATAGCC 59.494 50.000 0.00 0.00 0.00 3.93
7974 9134 3.914426 TCTTCCCTTGACCTTGATAGC 57.086 47.619 0.00 0.00 0.00 2.97
7975 9135 5.423610 TCTCTTCTTCCCTTGACCTTGATAG 59.576 44.000 0.00 0.00 0.00 2.08
7976 9136 5.342017 TCTCTTCTTCCCTTGACCTTGATA 58.658 41.667 0.00 0.00 0.00 2.15
7977 9137 4.171234 TCTCTTCTTCCCTTGACCTTGAT 58.829 43.478 0.00 0.00 0.00 2.57
7978 9138 3.587498 TCTCTTCTTCCCTTGACCTTGA 58.413 45.455 0.00 0.00 0.00 3.02
7979 9139 4.566426 ATCTCTTCTTCCCTTGACCTTG 57.434 45.455 0.00 0.00 0.00 3.61
7980 9140 5.590976 AAATCTCTTCTTCCCTTGACCTT 57.409 39.130 0.00 0.00 0.00 3.50
7981 9141 5.311913 AGAAAATCTCTTCTTCCCTTGACCT 59.688 40.000 0.00 0.00 31.39 3.85
7982 9142 5.565509 AGAAAATCTCTTCTTCCCTTGACC 58.434 41.667 0.00 0.00 31.39 4.02
7999 9159 4.251268 GTGCGTAGGGTAGTGAAGAAAAT 58.749 43.478 0.00 0.00 0.00 1.82
8000 9160 3.069872 TGTGCGTAGGGTAGTGAAGAAAA 59.930 43.478 0.00 0.00 0.00 2.29
8001 9161 2.629137 TGTGCGTAGGGTAGTGAAGAAA 59.371 45.455 0.00 0.00 0.00 2.52
8002 9162 2.241160 TGTGCGTAGGGTAGTGAAGAA 58.759 47.619 0.00 0.00 0.00 2.52
8003 9163 1.913778 TGTGCGTAGGGTAGTGAAGA 58.086 50.000 0.00 0.00 0.00 2.87
8004 9164 2.230508 TCTTGTGCGTAGGGTAGTGAAG 59.769 50.000 0.00 0.00 0.00 3.02
8012 9172 0.456221 ACGATCTCTTGTGCGTAGGG 59.544 55.000 0.00 0.00 34.93 3.53
8013 9173 2.279582 AACGATCTCTTGTGCGTAGG 57.720 50.000 0.00 0.00 35.74 3.18
8157 9317 2.121963 AGGTGAGGGGCTTGGTGA 60.122 61.111 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.