AutoCloner

Multiple sequence alignment - TraesCS1B01G307300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G307300	chr1B	100.000	2288	0	0	1	2288	530443640	530441353	0.000000e+00	4226
1	TraesCS1B01G307300	chr1B	90.703	925	82	3	603	1526	493723622	493724543	0.000000e+00	1229
2	TraesCS1B01G307300	chr1B	96.844	602	19	0	1	602	445111604	445112205	0.000000e+00	1007
3	TraesCS1B01G307300	chr1B	87.113	194	24	1	2096	2288	16917001	16917194	3.830000e-53	219
4	TraesCS1B01G307300	chr1B	87.302	189	23	1	2101	2288	493734547	493734735	4.950000e-52	215
5	TraesCS1B01G307300	chr5D	90.497	926	83	4	603	1526	469277226	469278148	0.000000e+00	1218
6	TraesCS1B01G307300	chr5D	89.763	928	91	3	603	1529	44576676	44577600	0.000000e+00	1184
7	TraesCS1B01G307300	chr5D	86.667	195	23	3	2096	2288	44578326	44578519	1.780000e-51	213
8	TraesCS1B01G307300	chr5D	85.052	194	27	2	2096	2288	469278730	469278922	1.790000e-46	196
9	TraesCS1B01G307300	chr6D	89.871	928	90	3	603	1529	16697498	16698422	0.000000e+00	1190
10	TraesCS1B01G307300	chr6D	86.667	195	23	3	2096	2288	16699147	16699340	1.780000e-51	213
11	TraesCS1B01G307300	chr3D	89.871	928	90	3	603	1529	563584925	563585849	0.000000e+00	1190
12	TraesCS1B01G307300	chr3D	82.675	329	54	3	1962	2288	610594238	610593911	2.880000e-74	289
13	TraesCS1B01G307300	chr3D	79.319	411	66	9	1357	1753	610594840	610594435	1.040000e-68	270
14	TraesCS1B01G307300	chr3D	86.154	195	24	3	2096	2288	563586575	563586768	8.280000e-50	207
15	TraesCS1B01G307300	chr2B	89.935	924	91	1	603	1526	798052410	798051489	0.000000e+00	1190
16	TraesCS1B01G307300	chr2B	96.678	602	19	1	1	602	508353847	508353247	0.000000e+00	1000
17	TraesCS1B01G307300	chr1D	89.871	928	90	3	603	1529	427877852	427878776	0.000000e+00	1190
18	TraesCS1B01G307300	chr1D	85.574	305	41	3	1986	2288	312415246	312414943	1.320000e-82	316
19	TraesCS1B01G307300	chr1D	89.691	194	19	1	2096	2288	427879490	427879683	1.760000e-61	246
20	TraesCS1B01G307300	chr1D	89.697	165	16	1	2125	2288	15514572	15514736	2.300000e-50	209
21	TraesCS1B01G307300	chr1D	85.567	194	21	7	2099	2288	270620992	270621182	1.790000e-46	196
22	TraesCS1B01G307300	chr1D	87.591	137	15	2	1874	2009	406833056	406832921	8.460000e-35	158
23	TraesCS1B01G307300	chr7D	89.871	928	89	4	603	1529	8547835	8548758	0.000000e+00	1188
24	TraesCS1B01G307300	chr2D	89.547	928	90	6	603	1529	106153614	106154535	0.000000e+00	1170
25	TraesCS1B01G307300	chr2D	90.252	595	54	3	1371	1964	640841328	640841919	0.000000e+00	774
26	TraesCS1B01G307300	chr2D	88.415	328	37	1	1962	2288	640842710	640843037	5.920000e-106	394
27	TraesCS1B01G307300	chr5B	97.320	597	16	0	1	597	33717066	33716470	0.000000e+00	1014
28	TraesCS1B01G307300	chr6B	97.010	602	18	0	1	602	48580557	48581158	0.000000e+00	1013
29	TraesCS1B01G307300	chr4B	97.010	602	18	0	1	602	544085647	544086248	0.000000e+00	1013
30	TraesCS1B01G307300	chr4B	97.010	602	18	0	1	602	544094232	544094833	0.000000e+00	1013
31	TraesCS1B01G307300	chr4A	96.849	603	19	0	1	603	722171217	722171819	0.000000e+00	1009
32	TraesCS1B01G307300	chr7B	96.844	602	19	0	1	602	85966718	85966117	0.000000e+00	1007
33	TraesCS1B01G307300	chr7B	96.557	610	18	3	1	608	670016367	670016975	0.000000e+00	1007
34	TraesCS1B01G307300	chr7A	88.852	305	31	3	1986	2288	17840059	17839756	2.780000e-99	372
35	TraesCS1B01G307300	chr7A	83.553	304	49	1	1986	2288	38919221	38918918	1.340000e-72	283
36	TraesCS1B01G307300	chr2A	90.230	174	15	2	2116	2288	768617982	768618154	2.290000e-55	226
37	TraesCS1B01G307300	chr3B	78.779	344	59	13	1951	2288	27465925	27466260	3.830000e-53	219
38	TraesCS1B01G307300	chrUn	86.458	192	23	3	2099	2288	24385268	24385078	8.280000e-50	207
39	TraesCS1B01G307300	chrUn	88.079	151	17	1	2139	2288	88886146	88885996	6.500000e-41	178
40	TraesCS1B01G307300	chrUn	88.079	151	17	1	2139	2288	361506969	361506819	6.500000e-41	178
41	TraesCS1B01G307300	chr3A	86.076	158	22	0	1777	1934	730884054	730884211	1.090000e-38	171

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G307300	chr1B	530441353	530443640	2287	True	4226.0	4226	100.0000	1	2288	1	chr1B.!!$R1	2287
1	TraesCS1B01G307300	chr1B	493723622	493724543	921	False	1229.0	1229	90.7030	603	1526	1	chr1B.!!$F3	923
2	TraesCS1B01G307300	chr1B	445111604	445112205	601	False	1007.0	1007	96.8440	1	602	1	chr1B.!!$F2	601
3	TraesCS1B01G307300	chr5D	469277226	469278922	1696	False	707.0	1218	87.7745	603	2288	2	chr5D.!!$F2	1685
4	TraesCS1B01G307300	chr5D	44576676	44578519	1843	False	698.5	1184	88.2150	603	2288	2	chr5D.!!$F1	1685
5	TraesCS1B01G307300	chr6D	16697498	16699340	1842	False	701.5	1190	88.2690	603	2288	2	chr6D.!!$F1	1685
6	TraesCS1B01G307300	chr3D	563584925	563586768	1843	False	698.5	1190	88.0125	603	2288	2	chr3D.!!$F1	1685
7	TraesCS1B01G307300	chr3D	610593911	610594840	929	True	279.5	289	80.9970	1357	2288	2	chr3D.!!$R1	931
8	TraesCS1B01G307300	chr2B	798051489	798052410	921	True	1190.0	1190	89.9350	603	1526	1	chr2B.!!$R2	923
9	TraesCS1B01G307300	chr2B	508353247	508353847	600	True	1000.0	1000	96.6780	1	602	1	chr2B.!!$R1	601
10	TraesCS1B01G307300	chr1D	427877852	427879683	1831	False	718.0	1190	89.7810	603	2288	2	chr1D.!!$F3	1685
11	TraesCS1B01G307300	chr7D	8547835	8548758	923	False	1188.0	1188	89.8710	603	1529	1	chr7D.!!$F1	926
12	TraesCS1B01G307300	chr2D	106153614	106154535	921	False	1170.0	1170	89.5470	603	1529	1	chr2D.!!$F1	926
13	TraesCS1B01G307300	chr2D	640841328	640843037	1709	False	584.0	774	89.3335	1371	2288	2	chr2D.!!$F2	917
14	TraesCS1B01G307300	chr5B	33716470	33717066	596	True	1014.0	1014	97.3200	1	597	1	chr5B.!!$R1	596
15	TraesCS1B01G307300	chr6B	48580557	48581158	601	False	1013.0	1013	97.0100	1	602	1	chr6B.!!$F1	601
16	TraesCS1B01G307300	chr4B	544085647	544086248	601	False	1013.0	1013	97.0100	1	602	1	chr4B.!!$F1	601
17	TraesCS1B01G307300	chr4B	544094232	544094833	601	False	1013.0	1013	97.0100	1	602	1	chr4B.!!$F2	601
18	TraesCS1B01G307300	chr4A	722171217	722171819	602	False	1009.0	1009	96.8490	1	603	1	chr4A.!!$F1	602
19	TraesCS1B01G307300	chr7B	85966117	85966718	601	True	1007.0	1007	96.8440	1	602	1	chr7B.!!$R1	601
20	TraesCS1B01G307300	chr7B	670016367	670016975	608	False	1007.0	1007	96.5570	1	608	1	chr7B.!!$F1	607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
982	983	0.666374	TCTCAGTTTCAGCGACACGA	59.334	50.0	0.0	0.0	0.0	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2059	3357	0.107643	TGAATGTGGTTGCTCCGTCA	59.892	50.0	0.0	0.0	39.52	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
137	138	2.324541	TGGGCCCATATGTTTAATGCC	58.675	47.619	24.45	3.92	36.68	4.40
138	139	2.324541	GGGCCCATATGTTTAATGCCA	58.675	47.619	19.95	0.00	39.15	4.92
202	203	4.037923	CGCTTGCAATAGGGGTTAATCATT	59.962	41.667	0.00	0.00	0.00	2.57
275	276	9.130661	CCCACATATCAAATTATCAAAGTACCA	57.869	33.333	0.00	0.00	0.00	3.25
610	611	1.246649	GTGGGTCATCATGCAACACA	58.753	50.000	0.00	0.00	0.00	3.72
628	629	1.538512	ACATCGTCGGAAAGAACTCGA	59.461	47.619	0.00	0.00	0.00	4.04
642	643	1.880340	CTCGACGAAGGAGGCATGC	60.880	63.158	9.90	9.90	0.00	4.06
658	659	2.830104	CATGCGAGACCATCAAGATCA	58.170	47.619	0.00	0.00	0.00	2.92
736	737	2.388735	ACGAGTGCCTGAAGATGGATA	58.611	47.619	0.00	0.00	0.00	2.59
765	766	1.072331	ACGGTTGATCAGTTTGCCTCT	59.928	47.619	0.00	0.00	0.00	3.69
832	833	3.181495	CCTAGAAGAAGTTGCGATCGTCT	60.181	47.826	17.81	11.05	37.92	4.18
835	836	2.949451	AGAAGTTGCGATCGTCTGAT	57.051	45.000	17.81	0.52	37.60	2.90
914	915	5.296151	TGTCTCAACCTGAAAACTCTCAT	57.704	39.130	0.00	0.00	0.00	2.90
931	932	1.899142	TCATGGTTGAGGATGTCGTCA	59.101	47.619	1.57	1.57	38.77	4.35
982	983	0.666374	TCTCAGTTTCAGCGACACGA	59.334	50.000	0.00	0.00	0.00	4.35
1020	1021	1.286880	GCTGACAAAGGCGCAATGT	59.713	52.632	10.83	10.99	0.00	2.71
1025	1026	2.816672	TGACAAAGGCGCAATGTATTGA	59.183	40.909	10.83	0.00	40.14	2.57
1029	1030	4.881273	ACAAAGGCGCAATGTATTGATCTA	59.119	37.500	10.83	0.00	40.14	1.98
1055	1056	1.139853	AGAAAAGCAGGGCGGATCTAG	59.860	52.381	0.00	0.00	0.00	2.43
1091	1094	0.560688	AAGGGGAAAGGGAAGCAACA	59.439	50.000	0.00	0.00	0.00	3.33
1110	1113	2.135933	CACTCGGCGAGAAAGAACTTT	58.864	47.619	40.35	14.35	33.32	2.66
1125	1128	0.603569	ACTTTGCTGACTCGGACGAT	59.396	50.000	0.00	0.00	0.00	3.73
1267	1270	2.341101	GCCGAGGAAGGAGACGACA	61.341	63.158	0.00	0.00	0.00	4.35
1287	1290	3.649502	ACAGGGATATGATGCTGATGTGA	59.350	43.478	0.00	0.00	0.00	3.58
1288	1291	4.103627	ACAGGGATATGATGCTGATGTGAA	59.896	41.667	0.00	0.00	0.00	3.18
1290	1293	5.710567	CAGGGATATGATGCTGATGTGAAAT	59.289	40.000	0.00	0.00	0.00	2.17
1329	1332	3.646534	TCCAGATGATCTTGGTCAGCTA	58.353	45.455	1.12	0.00	42.50	3.32
1367	1370	1.010125	CATCCGCGCCATTAAACCG	60.010	57.895	0.00	0.00	0.00	4.44
1368	1371	1.153329	ATCCGCGCCATTAAACCGA	60.153	52.632	0.00	0.00	0.00	4.69
1369	1372	1.157870	ATCCGCGCCATTAAACCGAG	61.158	55.000	0.00	0.00	0.00	4.63
1467	1471	0.036732	GGCACCAGAAGACCATGACA	59.963	55.000	0.00	0.00	0.00	3.58
1471	1475	2.549754	CACCAGAAGACCATGACACAAC	59.450	50.000	0.00	0.00	0.00	3.32
1536	1766	0.622136	AGAAGTCCATGATGCAGGCA	59.378	50.000	0.00	0.00	0.00	4.75
1566	1810	2.100631	CCGGAAGACCACGATGCAC	61.101	63.158	0.00	0.00	35.59	4.57
1567	1811	1.079819	CGGAAGACCACGATGCACT	60.080	57.895	0.00	0.00	35.59	4.40
1569	1813	1.202417	CGGAAGACCACGATGCACTAT	60.202	52.381	0.00	0.00	35.59	2.12
1603	1847	2.257371	CACGACGGATGACACGGT	59.743	61.111	0.00	0.00	35.23	4.83
1740	2152	1.638467	GCTCAGCCAATAACGCTCG	59.362	57.895	0.00	0.00	33.17	5.03
1753	2165	3.112075	GCTCGTACGCAGCAGCAA	61.112	61.111	24.93	2.55	42.27	3.91
1810	2315	4.421479	ACGGAGAGAAGCGGTGCG	62.421	66.667	0.00	0.00	0.00	5.34
1816	2321	1.153549	GAGAAGCGGTGCGAATCCT	60.154	57.895	0.00	0.00	0.00	3.24
1857	2362	4.647424	TTTGGTTCAGAAAAGAACGCAT	57.353	36.364	0.00	0.00	46.81	4.73
1897	2402	1.075301	AAGGCCCAGCAGTTTTGGT	60.075	52.632	0.00	0.00	33.73	3.67
1942	2447	3.960102	TCTTTGGCTGATTTCTTTGGTGT	59.040	39.130	0.00	0.00	0.00	4.16
1948	2453	3.319122	GCTGATTTCTTTGGTGTTCCTGT	59.681	43.478	0.00	0.00	34.23	4.00
1950	2455	4.531854	TGATTTCTTTGGTGTTCCTGTGA	58.468	39.130	0.00	0.00	34.23	3.58
1960	2465	3.555168	GGTGTTCCTGTGAGTGGTTCTAG	60.555	52.174	0.00	0.00	0.00	2.43
2047	3345	1.988107	AGATGTGGTGTCACCTCCAAT	59.012	47.619	22.56	9.70	42.98	3.16
2050	3348	2.615391	TGTGGTGTCACCTCCAATAGA	58.385	47.619	22.56	0.00	42.98	1.98
2053	3351	3.008049	GTGGTGTCACCTCCAATAGAACT	59.992	47.826	22.56	0.00	39.58	3.01
2069	3367	0.976641	AACTGGAGATGACGGAGCAA	59.023	50.000	0.00	0.00	0.00	3.91
2163	3461	6.295292	GGTGAAGATGAAAAGTAAAGGGCAAT	60.295	38.462	0.00	0.00	0.00	3.56
2171	3469	6.928492	TGAAAAGTAAAGGGCAATGATGTTTC	59.072	34.615	0.00	0.00	0.00	2.78
2209	3508	5.518487	GGAAAATTTTGAAGACGCAAAGACA	59.482	36.000	8.47	0.00	38.80	3.41
2210	3509	6.035542	GGAAAATTTTGAAGACGCAAAGACAA	59.964	34.615	8.47	0.00	38.80	3.18
2213	3512	5.755330	TTTTGAAGACGCAAAGACAAAAC	57.245	34.783	0.00	0.00	38.80	2.43
2217	3516	4.632251	TGAAGACGCAAAGACAAAACAGTA	59.368	37.500	0.00	0.00	0.00	2.74
2223	3522	4.367450	GCAAAGACAAAACAGTATTGGCA	58.633	39.130	0.00	0.00	39.01	4.92
2254	3553	3.007940	TGGATGAAGAGTTGTGGTCGATT	59.992	43.478	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	203	1.985159	ACTTGGACAAGCATCCCACTA	59.015	47.619	11.73	0.00	41.99	2.74
610	611	2.259505	GTCGAGTTCTTTCCGACGAT	57.740	50.000	0.00	0.00	42.24	3.73
628	629	2.185350	CTCGCATGCCTCCTTCGT	59.815	61.111	13.15	0.00	0.00	3.85
642	643	2.543012	GTGCATGATCTTGATGGTCTCG	59.457	50.000	12.54	0.00	0.00	4.04
658	659	1.304282	GGTCATGACCCTGGTGCAT	59.696	57.895	31.37	0.00	45.68	3.96
684	685	0.951040	GGGACTGAAGGTGTGCTTCG	60.951	60.000	0.00	0.00	33.83	3.79
736	737	4.073293	ACTGATCAACCGTCTCACTTTT	57.927	40.909	0.00	0.00	0.00	2.27
765	766	0.250597	TGACGAGGGTCTTGAGACGA	60.251	55.000	5.16	0.00	45.65	4.20
832	833	1.513800	CGGCGCGCAAAAATCATCA	60.514	52.632	34.42	0.00	0.00	3.07
852	853	1.146930	CTGGATGTAGCATGCCGGT	59.853	57.895	15.66	0.00	0.00	5.28
859	860	1.065551	CGTGACGATCTGGATGTAGCA	59.934	52.381	0.00	0.00	0.00	3.49
914	915	1.627864	TCTGACGACATCCTCAACCA	58.372	50.000	0.00	0.00	0.00	3.67
925	926	1.149148	GCCTTGAACCTTCTGACGAC	58.851	55.000	0.00	0.00	0.00	4.34
931	932	1.073199	CGTGGGCCTTGAACCTTCT	59.927	57.895	4.53	0.00	0.00	2.85
973	974	3.671411	ACTCGCCTTCGTGTCGCT	61.671	61.111	0.00	0.00	37.85	4.93
982	983	2.116983	ATCAGGTGCACACTCGCCTT	62.117	55.000	20.43	0.00	44.01	4.35
1020	1021	8.906867	CCCTGCTTTTCTTTTGATAGATCAATA	58.093	33.333	5.80	1.12	45.30	1.90
1025	1026	4.096984	CGCCCTGCTTTTCTTTTGATAGAT	59.903	41.667	0.00	0.00	0.00	1.98
1029	1030	1.273327	CCGCCCTGCTTTTCTTTTGAT	59.727	47.619	0.00	0.00	0.00	2.57
1055	1056	1.642952	CTTCTTCTTGGCGCTGCTCC	61.643	60.000	7.64	0.71	0.00	4.70
1091	1094	2.135933	CAAAGTTCTTTCTCGCCGAGT	58.864	47.619	14.64	0.00	0.00	4.18
1110	1113	1.657751	CCTCATCGTCCGAGTCAGCA	61.658	60.000	0.00	0.00	0.00	4.41
1267	1270	4.987963	TTCACATCAGCATCATATCCCT	57.012	40.909	0.00	0.00	0.00	4.20
1287	1290	3.383698	TCCTCCTCGTCCACTAGATTT	57.616	47.619	0.00	0.00	0.00	2.17
1288	1291	3.492337	GATCCTCCTCGTCCACTAGATT	58.508	50.000	0.00	0.00	0.00	2.40
1290	1293	1.143277	GGATCCTCCTCGTCCACTAGA	59.857	57.143	3.84	0.00	32.53	2.43
1367	1370	2.456119	CGCCACAACATCGCCTCTC	61.456	63.158	0.00	0.00	0.00	3.20
1368	1371	2.434884	CGCCACAACATCGCCTCT	60.435	61.111	0.00	0.00	0.00	3.69
1369	1372	4.166011	GCGCCACAACATCGCCTC	62.166	66.667	0.00	0.00	42.71	4.70
1414	1417	2.825532	GGTTTTACTGGCATGACCACAT	59.174	45.455	0.00	0.00	46.36	3.21
1467	1471	2.250939	CCACACCATCACGCGTTGT	61.251	57.895	10.22	8.67	0.00	3.32
1471	1475	2.356913	TGACCACACCATCACGCG	60.357	61.111	3.53	3.53	0.00	6.01
1536	1766	1.339929	GTCTTCCGGTGCCACAATTTT	59.660	47.619	0.00	0.00	0.00	1.82
1566	1810	0.043822	GACGCGCTTTGCTCGAATAG	60.044	55.000	5.73	0.00	39.18	1.73
1567	1811	1.418342	GGACGCGCTTTGCTCGAATA	61.418	55.000	5.73	0.00	39.18	1.75
1569	1813	3.411351	GGACGCGCTTTGCTCGAA	61.411	61.111	5.73	0.00	39.18	3.71
1619	1925	0.034059	CCTCGCTGTCCTTTGACACT	59.966	55.000	0.00	0.00	46.40	3.55
1721	2133	1.638467	GAGCGTTATTGGCTGAGCG	59.362	57.895	0.00	0.00	41.72	5.03
1730	2142	0.457166	TGCTGCGTACGAGCGTTATT	60.457	50.000	21.65	0.00	39.47	1.40
1740	2152	2.730672	CGGAGTTGCTGCTGCGTAC	61.731	63.158	11.21	11.18	43.64	3.67
1810	2315	7.378181	TGCACCTTTCAAATTTTCTAGGATTC	58.622	34.615	13.48	5.41	0.00	2.52
1816	2321	7.278875	ACCAAATGCACCTTTCAAATTTTCTA	58.721	30.769	0.00	0.00	0.00	2.10
1897	2402	7.164122	AGATTTCAGTGAATACTCTTCAAGCA	58.836	34.615	6.36	0.00	34.07	3.91
1942	2447	3.165875	CCTCTAGAACCACTCACAGGAA	58.834	50.000	0.00	0.00	0.00	3.36
1948	2453	2.621929	GGAGAGCCTCTAGAACCACTCA	60.622	54.545	14.36	0.00	0.00	3.41
1950	2455	1.359474	TGGAGAGCCTCTAGAACCACT	59.641	52.381	0.00	0.00	34.31	4.00
2047	3345	2.025155	GCTCCGTCATCTCCAGTTCTA	58.975	52.381	0.00	0.00	0.00	2.10
2050	3348	0.976641	TTGCTCCGTCATCTCCAGTT	59.023	50.000	0.00	0.00	0.00	3.16
2053	3351	1.191489	TGGTTGCTCCGTCATCTCCA	61.191	55.000	0.00	0.00	39.52	3.86
2059	3357	0.107643	TGAATGTGGTTGCTCCGTCA	59.892	50.000	0.00	0.00	39.52	4.35
2069	3367	0.394938	TGCGTACTGGTGAATGTGGT	59.605	50.000	0.00	0.00	0.00	4.16
2097	3395	2.289694	CCTTCGGACAGAGTTCCAACAT	60.290	50.000	0.00	0.00	35.04	2.71
2105	3403	0.318762	GTGCTTCCTTCGGACAGAGT	59.681	55.000	0.00	0.00	0.00	3.24
2171	3469	1.904287	TTTTCCGGTTCCTCATGTGG	58.096	50.000	7.52	7.52	0.00	4.17
2209	3508	2.819608	AGCACGATGCCAATACTGTTTT	59.180	40.909	6.39	0.00	46.52	2.43
2210	3509	2.436417	AGCACGATGCCAATACTGTTT	58.564	42.857	6.39	0.00	46.52	2.83
2213	3512	2.481568	CCATAGCACGATGCCAATACTG	59.518	50.000	6.39	0.00	46.52	2.74
2217	3516	2.156917	CATCCATAGCACGATGCCAAT	58.843	47.619	6.39	0.00	46.52	3.16
2223	3522	4.141846	ACAACTCTTCATCCATAGCACGAT	60.142	41.667	0.00	0.00	0.00	3.73
2254	3553	2.357952	CTCCCATGTATCGTTGTCTCGA	59.642	50.000	0.00	0.00	43.86	4.04

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.