Multiple sequence alignment - TraesCS1B01G307000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G307000 chr1B 100.000 3033 0 0 1 3033 530044489 530047521 0.000000e+00 5602
1 TraesCS1B01G307000 chr1B 100.000 1444 0 0 3234 4677 530047722 530049165 0.000000e+00 2667
2 TraesCS1B01G307000 chr1B 83.937 635 84 13 55 679 495975072 495974446 4.030000e-165 592
3 TraesCS1B01G307000 chr1B 84.058 207 28 4 3240 3442 530047229 530047434 1.330000e-45 195
4 TraesCS1B01G307000 chr1B 84.058 207 28 4 2741 2946 530047728 530047930 1.330000e-45 195
5 TraesCS1B01G307000 chr1B 93.750 128 8 0 3234 3361 530047394 530047521 4.780000e-45 193
6 TraesCS1B01G307000 chr1B 93.750 128 8 0 2906 3033 530047722 530047849 4.780000e-45 193
7 TraesCS1B01G307000 chr1B 85.816 141 17 2 2896 3033 530047255 530047395 3.770000e-31 147
8 TraesCS1B01G307000 chr1D 93.166 1156 66 5 1884 3033 392577432 392576284 0.000000e+00 1685
9 TraesCS1B01G307000 chr1D 94.430 772 37 3 3234 4002 392576369 392575601 0.000000e+00 1182
10 TraesCS1B01G307000 chr1D 87.103 977 73 23 683 1630 392578388 392577436 0.000000e+00 1057
11 TraesCS1B01G307000 chr1D 87.872 437 39 10 1 429 472298492 472298062 6.990000e-138 501
12 TraesCS1B01G307000 chr1D 95.932 295 12 0 2739 3033 392576536 392576242 3.270000e-131 479
13 TraesCS1B01G307000 chr1D 89.474 209 22 0 3234 3442 392576411 392576203 9.980000e-67 265
14 TraesCS1B01G307000 chr1D 90.000 200 20 0 3243 3442 392576444 392576245 4.640000e-65 259
15 TraesCS1B01G307000 chr1D 82.474 291 46 4 2744 3033 392576444 392576158 2.790000e-62 250
16 TraesCS1B01G307000 chr1D 87.192 203 26 0 3240 3442 392576489 392576287 1.010000e-56 231
17 TraesCS1B01G307000 chr1D 83.784 222 33 2 2767 2988 392576379 392576161 1.710000e-49 207
18 TraesCS1B01G307000 chr1D 83.575 207 29 4 3240 3442 392576534 392576329 6.180000e-44 189
19 TraesCS1B01G307000 chr1D 82.297 209 31 3 2831 3033 392576576 392576368 4.810000e-40 176
20 TraesCS1B01G307000 chr1D 93.103 87 3 2 4594 4677 392574915 392574829 1.770000e-24 124
21 TraesCS1B01G307000 chr1D 92.208 77 6 0 4087 4163 392575602 392575526 4.950000e-20 110
22 TraesCS1B01G307000 chr1A 94.958 595 29 1 1772 2365 492789195 492789789 0.000000e+00 931
23 TraesCS1B01G307000 chr1A 93.559 621 36 4 3385 4002 492796269 492796888 0.000000e+00 922
24 TraesCS1B01G307000 chr1A 84.597 844 74 25 683 1511 492713891 492714693 0.000000e+00 787
25 TraesCS1B01G307000 chr1A 86.451 679 68 6 2361 3033 492791558 492792218 0.000000e+00 723
26 TraesCS1B01G307000 chr1A 91.538 520 34 6 4158 4669 492797003 492797520 0.000000e+00 708
27 TraesCS1B01G307000 chr1A 81.054 702 90 22 1 675 432525050 432525735 1.930000e-143 520
28 TraesCS1B01G307000 chr1A 80.288 695 96 22 2 670 536957464 536958143 1.960000e-133 486
29 TraesCS1B01G307000 chr1A 85.680 419 55 5 1520 1936 492789374 492789789 2.000000e-118 436
30 TraesCS1B01G307000 chr1A 91.525 295 25 0 2739 3033 492791966 492792260 1.570000e-109 407
31 TraesCS1B01G307000 chr1A 91.928 223 17 1 1551 1772 492714692 492714914 1.260000e-80 311
32 TraesCS1B01G307000 chr1A 88.265 196 23 0 3234 3429 492792091 492792286 7.820000e-58 235
33 TraesCS1B01G307000 chr1A 80.311 193 35 1 2742 2934 492792098 492792287 4.880000e-30 143
34 TraesCS1B01G307000 chr1A 94.805 77 4 0 4087 4163 492796887 492796963 2.290000e-23 121
35 TraesCS1B01G307000 chr7A 82.695 705 88 26 1 683 35247500 35248192 3.120000e-166 595
36 TraesCS1B01G307000 chr3A 82.213 714 83 28 1 682 675364614 675365315 4.060000e-160 575
37 TraesCS1B01G307000 chr6D 88.551 428 44 3 1 423 763624 764051 8.970000e-142 514
38 TraesCS1B01G307000 chr6B 80.960 646 93 21 59 680 472707790 472708429 7.040000e-133 484
39 TraesCS1B01G307000 chr7B 79.531 640 102 18 59 682 48856056 48856682 3.340000e-116 429
40 TraesCS1B01G307000 chr6A 87.405 262 27 5 420 680 373135598 373135854 3.540000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G307000 chr1B 530044489 530049165 4676 False 1313.142857 5602 91.633143 1 4677 7 chr1B.!!$F1 4676
1 TraesCS1B01G307000 chr1B 495974446 495975072 626 True 592.000000 592 83.937000 55 679 1 chr1B.!!$R1 624
2 TraesCS1B01G307000 chr1D 392574829 392578388 3559 True 478.000000 1685 88.826000 683 4677 13 chr1D.!!$R2 3994
3 TraesCS1B01G307000 chr1A 492713891 492714914 1023 False 549.000000 787 88.262500 683 1772 2 chr1A.!!$F3 1089
4 TraesCS1B01G307000 chr1A 432525050 432525735 685 False 520.000000 520 81.054000 1 675 1 chr1A.!!$F1 674
5 TraesCS1B01G307000 chr1A 492789195 492797520 8325 False 514.000000 931 89.676889 1520 4669 9 chr1A.!!$F4 3149
6 TraesCS1B01G307000 chr1A 536957464 536958143 679 False 486.000000 486 80.288000 2 670 1 chr1A.!!$F2 668
7 TraesCS1B01G307000 chr7A 35247500 35248192 692 False 595.000000 595 82.695000 1 683 1 chr7A.!!$F1 682
8 TraesCS1B01G307000 chr3A 675364614 675365315 701 False 575.000000 575 82.213000 1 682 1 chr3A.!!$F1 681
9 TraesCS1B01G307000 chr6B 472707790 472708429 639 False 484.000000 484 80.960000 59 680 1 chr6B.!!$F1 621
10 TraesCS1B01G307000 chr7B 48856056 48856682 626 False 429.000000 429 79.531000 59 682 1 chr7B.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 160 0.104304 AGCAAAACCGTGACTCTCGT 59.896 50.0 0.24 0.0 0.00 4.18 F
1268 1364 0.036388 GGAGATGAACCGTGGAGCAA 60.036 55.0 0.00 0.0 0.00 3.91 F
1514 1614 0.036765 CAGCAGTAGGGCAAACGGTA 60.037 55.0 0.00 0.0 35.83 4.02 F
2984 4907 0.103390 TTCGGTGAGCGTGAAGTGAA 59.897 50.0 3.30 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1410 0.107897 ATTCGCACGGTATCAGCCAA 60.108 50.0 0.00 0.0 0.0 4.52 R
3255 5178 0.035317 TGGCTTCACTTCACGCTCAT 59.965 50.0 0.00 0.0 0.0 2.90 R
3265 5188 0.038744 CAGGGACCATTGGCTTCACT 59.961 55.0 1.54 0.0 0.0 3.41 R
4063 9976 0.034337 CCCCGGTCCCATAACATACG 59.966 60.0 0.00 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.741092 TCACAACCGTGCCTCTCC 59.259 61.111 0.00 0.00 43.28 3.71
30 31 1.819305 GCCTCTCCTGGAAGCAAAACA 60.819 52.381 0.00 0.00 32.03 2.83
143 160 0.104304 AGCAAAACCGTGACTCTCGT 59.896 50.000 0.24 0.00 0.00 4.18
217 245 0.318699 CTCTCGCGAAGACACAACCA 60.319 55.000 11.33 0.00 0.00 3.67
219 247 1.542472 TCTCGCGAAGACACAACCATA 59.458 47.619 11.33 0.00 0.00 2.74
239 267 1.141053 ACCTCTCGTGGAAGCAAAACT 59.859 47.619 0.00 0.00 0.00 2.66
249 277 3.206150 GGAAGCAAAACTGTGACTCTCA 58.794 45.455 0.00 0.00 0.00 3.27
334 374 0.320683 CACAACCGTGCCTCTCATGA 60.321 55.000 0.00 0.00 36.06 3.07
362 402 4.170723 GTGACTCTCGCGAAAGGG 57.829 61.111 14.96 3.76 46.71 3.95
463 532 6.129743 GCGCCAAAAGAAATTTCGAATTTTTG 60.130 34.615 23.45 23.45 36.06 2.44
603 678 1.577922 GTCCAGAGCGTGACACGTA 59.422 57.895 27.32 5.67 44.73 3.57
676 751 5.228635 CGAAGAAGCGCTCGTTAATTAGTTA 59.771 40.000 12.06 0.00 0.00 2.24
693 768 3.922910 AGTTACTCTCGGTTTTGGCTAC 58.077 45.455 0.00 0.00 0.00 3.58
696 771 1.002087 ACTCTCGGTTTTGGCTACCAG 59.998 52.381 0.00 0.00 33.81 4.00
705 780 2.738587 TTGGCTACCAGGTGAACAAA 57.261 45.000 0.76 0.00 33.81 2.83
714 790 5.529581 ACCAGGTGAACAAATTTTACCAG 57.470 39.130 0.00 5.36 33.88 4.00
729 805 8.902540 AATTTTACCAGGAGGAATTTCAAAAC 57.097 30.769 0.00 0.00 38.69 2.43
952 1043 0.874607 GCCGTACCGATCATTTCGCT 60.875 55.000 0.00 0.00 46.71 4.93
1053 1144 2.068821 GGAGATGGAGCAGGCCTCA 61.069 63.158 0.00 0.00 42.62 3.86
1122 1213 1.803334 CTGGGTTCGTCCAATTTCGA 58.197 50.000 2.42 0.00 36.21 3.71
1168 1264 5.350640 CCGTAGTTCCTTTTTAGCTTCGAAT 59.649 40.000 0.00 0.00 0.00 3.34
1247 1343 0.107752 CATTTGGGGATTTTGGGCGG 60.108 55.000 0.00 0.00 0.00 6.13
1248 1344 0.546507 ATTTGGGGATTTTGGGCGGT 60.547 50.000 0.00 0.00 0.00 5.68
1264 1360 1.980052 GGTGGAGATGAACCGTGGA 59.020 57.895 0.00 0.00 0.00 4.02
1265 1361 0.108138 GGTGGAGATGAACCGTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
1266 1362 0.741221 GTGGAGATGAACCGTGGAGC 60.741 60.000 0.00 0.00 0.00 4.70
1267 1363 1.191489 TGGAGATGAACCGTGGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
1268 1364 0.036388 GGAGATGAACCGTGGAGCAA 60.036 55.000 0.00 0.00 0.00 3.91
1269 1365 1.079503 GAGATGAACCGTGGAGCAAC 58.920 55.000 0.00 0.00 0.00 4.17
1270 1366 0.321653 AGATGAACCGTGGAGCAACC 60.322 55.000 0.00 0.00 39.54 3.77
1277 1373 3.112709 GTGGAGCAACCGAGCGTC 61.113 66.667 0.00 0.00 42.61 5.19
1278 1374 4.717629 TGGAGCAACCGAGCGTCG 62.718 66.667 0.00 0.00 42.61 5.12
1280 1376 3.470567 GAGCAACCGAGCGTCGTG 61.471 66.667 0.00 1.68 38.40 4.35
1281 1377 4.280494 AGCAACCGAGCGTCGTGT 62.280 61.111 0.00 2.58 38.40 4.49
1282 1378 4.059459 GCAACCGAGCGTCGTGTG 62.059 66.667 0.00 5.41 38.40 3.82
1285 1381 2.235016 AACCGAGCGTCGTGTGTTG 61.235 57.895 0.00 0.00 38.40 3.33
1287 1383 1.947146 CCGAGCGTCGTGTGTTGAA 60.947 57.895 0.00 0.00 38.40 2.69
1289 1385 1.206745 CGAGCGTCGTGTGTTGAACT 61.207 55.000 0.00 0.00 34.72 3.01
1290 1386 0.503117 GAGCGTCGTGTGTTGAACTC 59.497 55.000 0.00 0.00 0.00 3.01
1291 1387 0.102481 AGCGTCGTGTGTTGAACTCT 59.898 50.000 0.00 0.00 0.00 3.24
1292 1388 0.229753 GCGTCGTGTGTTGAACTCTG 59.770 55.000 0.00 0.00 0.00 3.35
1293 1389 0.852777 CGTCGTGTGTTGAACTCTGG 59.147 55.000 0.00 0.00 0.00 3.86
1294 1390 1.801395 CGTCGTGTGTTGAACTCTGGT 60.801 52.381 0.00 0.00 0.00 4.00
1296 1392 0.852777 CGTGTGTTGAACTCTGGTCG 59.147 55.000 0.00 0.00 0.00 4.79
1298 1394 2.755650 GTGTGTTGAACTCTGGTCGAT 58.244 47.619 0.00 0.00 0.00 3.59
1299 1395 3.131396 GTGTGTTGAACTCTGGTCGATT 58.869 45.455 0.00 0.00 0.00 3.34
1301 1397 3.807622 TGTGTTGAACTCTGGTCGATTTC 59.192 43.478 0.00 0.00 33.32 2.17
1302 1398 3.807622 GTGTTGAACTCTGGTCGATTTCA 59.192 43.478 0.00 0.00 38.90 2.69
1305 1401 2.003301 GAACTCTGGTCGATTTCAGGC 58.997 52.381 11.59 0.00 33.04 4.85
1306 1402 0.976641 ACTCTGGTCGATTTCAGGCA 59.023 50.000 11.59 0.00 0.00 4.75
1308 1404 1.205655 CTCTGGTCGATTTCAGGCAGA 59.794 52.381 11.59 0.00 0.00 4.26
1309 1405 1.066858 TCTGGTCGATTTCAGGCAGAC 60.067 52.381 11.59 0.00 0.00 3.51
1310 1406 0.684535 TGGTCGATTTCAGGCAGACA 59.315 50.000 0.00 0.00 33.84 3.41
1311 1407 1.071542 TGGTCGATTTCAGGCAGACAA 59.928 47.619 0.00 0.00 33.84 3.18
1312 1408 2.290260 TGGTCGATTTCAGGCAGACAAT 60.290 45.455 0.00 0.00 33.84 2.71
1313 1409 2.096496 GGTCGATTTCAGGCAGACAATG 59.904 50.000 0.00 0.00 33.84 2.82
1314 1410 2.744202 GTCGATTTCAGGCAGACAATGT 59.256 45.455 0.00 0.00 32.57 2.71
1315 1411 3.189287 GTCGATTTCAGGCAGACAATGTT 59.811 43.478 0.00 0.00 32.57 2.71
1316 1412 3.189080 TCGATTTCAGGCAGACAATGTTG 59.811 43.478 0.00 0.00 0.00 3.33
1317 1413 3.671433 CGATTTCAGGCAGACAATGTTGG 60.671 47.826 0.00 0.00 0.00 3.77
1318 1414 0.961019 TTCAGGCAGACAATGTTGGC 59.039 50.000 11.83 11.83 39.90 4.52
1328 1424 2.083774 ACAATGTTGGCTGATACCGTG 58.916 47.619 0.00 0.00 0.00 4.94
1341 1437 4.496360 TGATACCGTGCGAATTCTGTTTA 58.504 39.130 3.52 0.00 0.00 2.01
1342 1438 4.930405 TGATACCGTGCGAATTCTGTTTAA 59.070 37.500 3.52 0.00 0.00 1.52
1355 1455 7.254252 CGAATTCTGTTTAAGATGTGGCTAGAG 60.254 40.741 3.52 0.00 33.93 2.43
1370 1470 6.166982 GTGGCTAGAGTACTGAATTTTGTCT 58.833 40.000 0.00 0.00 0.00 3.41
1392 1492 4.971939 TGAGAATGTCAACATGTTCCTCA 58.028 39.130 8.48 11.10 36.56 3.86
1393 1493 4.756642 TGAGAATGTCAACATGTTCCTCAC 59.243 41.667 8.48 4.00 36.56 3.51
1400 1500 7.581213 TGTCAACATGTTCCTCACTAAAAAT 57.419 32.000 8.48 0.00 0.00 1.82
1475 1575 4.263594 TGGGGAAATGGAACTAGTTGTACC 60.264 45.833 14.14 8.87 0.00 3.34
1511 1611 0.605319 TTCCAGCAGTAGGGCAAACG 60.605 55.000 0.00 0.00 35.83 3.60
1514 1614 0.036765 CAGCAGTAGGGCAAACGGTA 60.037 55.000 0.00 0.00 35.83 4.02
1590 1690 7.540055 CCTGATAGATTTCTGAAAGTTGTTTGC 59.460 37.037 8.95 0.00 33.76 3.68
1591 1691 7.939782 TGATAGATTTCTGAAAGTTGTTTGCA 58.060 30.769 8.95 0.00 33.76 4.08
1594 1694 7.704789 AGATTTCTGAAAGTTGTTTGCATTC 57.295 32.000 8.95 0.00 33.76 2.67
1603 1704 8.196771 TGAAAGTTGTTTGCATTCTTACTGAAT 58.803 29.630 0.00 0.00 45.52 2.57
1606 1707 8.356533 AGTTGTTTGCATTCTTACTGAATTTG 57.643 30.769 0.00 0.00 43.00 2.32
1669 1770 3.255725 CAGTGCCTACAAAATGCATTGG 58.744 45.455 13.82 10.48 38.57 3.16
1670 1771 2.001872 GTGCCTACAAAATGCATTGGC 58.998 47.619 23.94 23.94 37.34 4.52
1671 1772 1.901159 TGCCTACAAAATGCATTGGCT 59.099 42.857 28.08 11.97 41.91 4.75
1672 1773 2.094078 TGCCTACAAAATGCATTGGCTC 60.094 45.455 28.08 10.01 41.91 4.70
1673 1774 2.739609 GCCTACAAAATGCATTGGCTCC 60.740 50.000 23.60 4.37 41.91 4.70
1674 1775 2.762327 CCTACAAAATGCATTGGCTCCT 59.238 45.455 13.82 0.00 41.91 3.69
1675 1776 3.953612 CCTACAAAATGCATTGGCTCCTA 59.046 43.478 13.82 0.00 41.91 2.94
1676 1777 4.402155 CCTACAAAATGCATTGGCTCCTAA 59.598 41.667 13.82 0.00 41.91 2.69
1677 1778 4.192429 ACAAAATGCATTGGCTCCTAAC 57.808 40.909 13.82 0.00 41.91 2.34
1678 1779 3.834231 ACAAAATGCATTGGCTCCTAACT 59.166 39.130 13.82 0.00 41.91 2.24
1679 1780 4.082026 ACAAAATGCATTGGCTCCTAACTC 60.082 41.667 13.82 0.00 41.91 3.01
1680 1781 2.355010 ATGCATTGGCTCCTAACTCC 57.645 50.000 0.00 0.00 41.91 3.85
1681 1782 1.289160 TGCATTGGCTCCTAACTCCT 58.711 50.000 0.00 0.00 41.91 3.69
1682 1783 2.477245 TGCATTGGCTCCTAACTCCTA 58.523 47.619 0.00 0.00 41.91 2.94
1683 1784 2.843730 TGCATTGGCTCCTAACTCCTAA 59.156 45.455 0.00 0.00 41.91 2.69
1684 1785 3.118261 TGCATTGGCTCCTAACTCCTAAG 60.118 47.826 0.00 0.00 41.91 2.18
1685 1786 3.134804 GCATTGGCTCCTAACTCCTAAGA 59.865 47.826 0.00 0.00 36.96 2.10
1686 1787 4.202409 GCATTGGCTCCTAACTCCTAAGAT 60.202 45.833 0.00 0.00 36.96 2.40
1687 1788 5.688766 GCATTGGCTCCTAACTCCTAAGATT 60.689 44.000 0.00 0.00 36.96 2.40
1688 1789 5.615925 TTGGCTCCTAACTCCTAAGATTC 57.384 43.478 0.00 0.00 0.00 2.52
1689 1790 4.620723 TGGCTCCTAACTCCTAAGATTCA 58.379 43.478 0.00 0.00 0.00 2.57
1690 1791 5.030147 TGGCTCCTAACTCCTAAGATTCAA 58.970 41.667 0.00 0.00 0.00 2.69
1691 1792 5.129485 TGGCTCCTAACTCCTAAGATTCAAG 59.871 44.000 0.00 0.00 0.00 3.02
1692 1793 5.129650 GGCTCCTAACTCCTAAGATTCAAGT 59.870 44.000 0.00 0.00 0.00 3.16
1693 1794 6.324254 GGCTCCTAACTCCTAAGATTCAAGTA 59.676 42.308 0.00 0.00 0.00 2.24
1694 1795 7.015779 GGCTCCTAACTCCTAAGATTCAAGTAT 59.984 40.741 0.00 0.00 0.00 2.12
1695 1796 8.425703 GCTCCTAACTCCTAAGATTCAAGTATT 58.574 37.037 0.00 0.00 0.00 1.89
1696 1797 9.974980 CTCCTAACTCCTAAGATTCAAGTATTC 57.025 37.037 0.00 0.00 0.00 1.75
1697 1798 9.488762 TCCTAACTCCTAAGATTCAAGTATTCA 57.511 33.333 0.00 0.00 0.00 2.57
1701 1802 9.793259 AACTCCTAAGATTCAAGTATTCAACAA 57.207 29.630 0.00 0.00 0.00 2.83
1702 1803 9.220767 ACTCCTAAGATTCAAGTATTCAACAAC 57.779 33.333 0.00 0.00 0.00 3.32
1703 1804 9.442047 CTCCTAAGATTCAAGTATTCAACAACT 57.558 33.333 0.00 0.00 0.00 3.16
1704 1805 9.219603 TCCTAAGATTCAAGTATTCAACAACTG 57.780 33.333 0.00 0.00 0.00 3.16
1705 1806 9.219603 CCTAAGATTCAAGTATTCAACAACTGA 57.780 33.333 0.00 0.00 0.00 3.41
1708 1809 8.682936 AGATTCAAGTATTCAACAACTGAACT 57.317 30.769 0.00 0.00 46.80 3.01
1709 1810 8.778358 AGATTCAAGTATTCAACAACTGAACTC 58.222 33.333 0.00 0.00 46.80 3.01
1710 1811 6.525121 TCAAGTATTCAACAACTGAACTCG 57.475 37.500 0.00 0.00 46.80 4.18
1711 1812 5.465390 TCAAGTATTCAACAACTGAACTCGG 59.535 40.000 0.00 0.00 46.80 4.63
1712 1813 4.957296 AGTATTCAACAACTGAACTCGGT 58.043 39.130 0.00 0.00 46.80 4.69
1713 1814 4.989168 AGTATTCAACAACTGAACTCGGTC 59.011 41.667 0.00 0.00 46.80 4.79
1714 1815 2.971660 TCAACAACTGAACTCGGTCA 57.028 45.000 0.00 0.00 33.61 4.02
1715 1816 3.254470 TCAACAACTGAACTCGGTCAA 57.746 42.857 0.00 0.00 33.61 3.18
1716 1817 3.804036 TCAACAACTGAACTCGGTCAAT 58.196 40.909 0.00 0.00 33.61 2.57
1717 1818 3.807622 TCAACAACTGAACTCGGTCAATC 59.192 43.478 0.00 0.00 33.61 2.67
1718 1819 2.767505 ACAACTGAACTCGGTCAATCC 58.232 47.619 0.00 0.00 33.61 3.01
1719 1820 2.104111 ACAACTGAACTCGGTCAATCCA 59.896 45.455 0.00 0.00 33.61 3.41
1720 1821 2.738846 CAACTGAACTCGGTCAATCCAG 59.261 50.000 0.00 0.00 33.61 3.86
1721 1822 1.338200 ACTGAACTCGGTCAATCCAGC 60.338 52.381 0.00 0.00 35.57 4.85
1722 1823 0.389817 TGAACTCGGTCAATCCAGCG 60.390 55.000 0.00 0.00 38.65 5.18
1723 1824 0.108804 GAACTCGGTCAATCCAGCGA 60.109 55.000 0.00 0.00 43.70 4.93
1725 1826 3.694746 TCGGTCAATCCAGCGAGT 58.305 55.556 0.00 0.00 41.18 4.18
1726 1827 1.215382 TCGGTCAATCCAGCGAGTG 59.785 57.895 0.00 0.00 41.18 3.51
1727 1828 2.456119 CGGTCAATCCAGCGAGTGC 61.456 63.158 0.00 0.00 39.69 4.40
1759 1860 8.944029 CAAATATGCATTTCCAATAACAAACCA 58.056 29.630 3.54 0.00 31.82 3.67
1760 1861 8.491331 AATATGCATTTCCAATAACAAACCAC 57.509 30.769 3.54 0.00 0.00 4.16
1761 1862 4.302455 TGCATTTCCAATAACAAACCACG 58.698 39.130 0.00 0.00 0.00 4.94
1762 1863 4.038042 TGCATTTCCAATAACAAACCACGA 59.962 37.500 0.00 0.00 0.00 4.35
1763 1864 4.384547 GCATTTCCAATAACAAACCACGAC 59.615 41.667 0.00 0.00 0.00 4.34
1764 1865 5.768317 CATTTCCAATAACAAACCACGACT 58.232 37.500 0.00 0.00 0.00 4.18
1765 1866 6.568844 GCATTTCCAATAACAAACCACGACTA 60.569 38.462 0.00 0.00 0.00 2.59
1766 1867 6.548441 TTTCCAATAACAAACCACGACTAG 57.452 37.500 0.00 0.00 0.00 2.57
1767 1868 5.217978 TCCAATAACAAACCACGACTAGT 57.782 39.130 0.00 0.00 0.00 2.57
1768 1869 5.613329 TCCAATAACAAACCACGACTAGTT 58.387 37.500 0.00 0.00 0.00 2.24
1769 1870 5.467399 TCCAATAACAAACCACGACTAGTTG 59.533 40.000 8.69 8.69 0.00 3.16
1770 1871 5.467399 CCAATAACAAACCACGACTAGTTGA 59.533 40.000 17.37 0.00 0.00 3.18
1771 1872 6.017770 CCAATAACAAACCACGACTAGTTGAA 60.018 38.462 17.37 0.00 0.00 2.69
1772 1873 7.308348 CCAATAACAAACCACGACTAGTTGAAT 60.308 37.037 17.37 0.00 0.00 2.57
1773 1874 8.714179 CAATAACAAACCACGACTAGTTGAATA 58.286 33.333 17.37 0.31 0.00 1.75
1774 1875 9.444600 AATAACAAACCACGACTAGTTGAATAT 57.555 29.630 17.37 2.42 0.00 1.28
1784 1885 8.854312 CACGACTAGTTGAATATATGTATGCAG 58.146 37.037 17.37 0.00 27.54 4.41
1795 1896 0.608130 TGTATGCAGTTCGACTGGCT 59.392 50.000 14.19 0.00 46.01 4.75
1805 1906 0.888619 TCGACTGGCTACCACTTCAG 59.111 55.000 0.00 0.00 0.00 3.02
1825 1926 4.221482 TCAGAACTCAGCTTCAAGCATAGA 59.779 41.667 13.10 5.61 45.56 1.98
1862 1964 5.231779 CGTATCTTCTAGCTCATATGCATGC 59.768 44.000 11.82 11.82 34.99 4.06
1872 1974 5.710567 AGCTCATATGCATGCTGATAATTGT 59.289 36.000 20.33 0.00 34.19 2.71
1875 1977 6.683715 TCATATGCATGCTGATAATTGTTGG 58.316 36.000 20.33 0.00 31.73 3.77
1903 2005 0.613260 TTCTAGAACGCTGGCATGGT 59.387 50.000 0.00 0.00 0.00 3.55
1918 2020 2.477863 GCATGGTCTTGTTTATCACGGC 60.478 50.000 0.00 0.00 0.00 5.68
1947 2049 3.181973 CGAGATCTGAGATGTGCATTTCG 59.818 47.826 0.00 0.00 0.00 3.46
1961 2063 3.316588 TGCATTTCGCTGTTTGGAACTTA 59.683 39.130 0.00 0.00 43.06 2.24
2016 2118 5.882557 GGCCTGATAGATTTCTGAAAACTGA 59.117 40.000 19.40 7.33 0.00 3.41
2019 2121 9.113838 GCCTGATAGATTTCTGAAAACTGATTA 57.886 33.333 19.40 3.74 0.00 1.75
2213 2315 4.640647 ACGACTAGTTGATATCTCTGTGCA 59.359 41.667 17.37 0.00 0.00 4.57
2435 4310 2.667536 CAAGAGCAGTGCCACGCT 60.668 61.111 12.58 12.70 42.42 5.07
2436 4311 2.667536 AAGAGCAGTGCCACGCTG 60.668 61.111 16.65 11.30 43.89 5.18
2437 4312 3.169155 AAGAGCAGTGCCACGCTGA 62.169 57.895 16.65 0.00 43.78 4.26
2438 4313 3.117171 GAGCAGTGCCACGCTGAG 61.117 66.667 16.65 0.00 43.78 3.35
2439 4314 3.580100 GAGCAGTGCCACGCTGAGA 62.580 63.158 16.65 0.00 43.78 3.27
2440 4315 2.666190 GCAGTGCCACGCTGAGAA 60.666 61.111 12.10 0.00 43.78 2.87
2458 4333 0.687354 AATCAAGACTCCAGTGGCGT 59.313 50.000 3.96 3.96 0.00 5.68
2716 4591 1.594833 CAGCCAGTGCAATGCCATT 59.405 52.632 9.04 0.00 41.13 3.16
2719 4594 1.518774 CCAGTGCAATGCCATTCCC 59.481 57.895 9.04 0.00 0.00 3.97
2734 4609 1.267121 TTCCCCGTCTTCTTCTCCTG 58.733 55.000 0.00 0.00 0.00 3.86
2736 4611 1.219393 CCCGTCTTCTTCTCCTGCC 59.781 63.158 0.00 0.00 0.00 4.85
2737 4612 1.544825 CCCGTCTTCTTCTCCTGCCA 61.545 60.000 0.00 0.00 0.00 4.92
2812 4735 5.618236 CCTCTATCCTTGATGAGCATGAAA 58.382 41.667 0.00 0.00 0.00 2.69
2840 4763 0.179124 GTGATCACCGCCTCTGTCTC 60.179 60.000 15.31 0.00 0.00 3.36
2843 4766 2.838748 ATCACCGCCTCTGTCTCCGA 62.839 60.000 0.00 0.00 0.00 4.55
2856 4779 1.400846 GTCTCCGATGAGCGTGAAGTA 59.599 52.381 0.00 0.00 38.58 2.24
2940 4863 2.560981 TGTCTTCCATGAGCGTGAAGTA 59.439 45.455 0.00 0.00 37.39 2.24
2981 4904 0.318784 GTCTTCGGTGAGCGTGAAGT 60.319 55.000 3.30 0.00 39.97 3.01
2982 4905 0.318699 TCTTCGGTGAGCGTGAAGTG 60.319 55.000 3.30 0.00 39.97 3.16
2983 4906 0.318699 CTTCGGTGAGCGTGAAGTGA 60.319 55.000 3.30 0.00 35.51 3.41
2984 4907 0.103390 TTCGGTGAGCGTGAAGTGAA 59.897 50.000 3.30 0.00 0.00 3.18
2985 4908 0.318699 TCGGTGAGCGTGAAGTGAAG 60.319 55.000 3.30 0.00 0.00 3.02
2986 4909 1.862806 GGTGAGCGTGAAGTGAAGC 59.137 57.895 0.00 0.00 0.00 3.86
2987 4910 1.569479 GGTGAGCGTGAAGTGAAGCC 61.569 60.000 0.00 0.00 0.00 4.35
2988 4911 0.880278 GTGAGCGTGAAGTGAAGCCA 60.880 55.000 0.00 0.00 0.00 4.75
2989 4912 0.601046 TGAGCGTGAAGTGAAGCCAG 60.601 55.000 0.00 0.00 0.00 4.85
2990 4913 0.601311 GAGCGTGAAGTGAAGCCAGT 60.601 55.000 0.00 0.00 0.00 4.00
2991 4914 0.882042 AGCGTGAAGTGAAGCCAGTG 60.882 55.000 0.00 0.00 0.00 3.66
2992 4915 1.845809 GCGTGAAGTGAAGCCAGTGG 61.846 60.000 4.20 4.20 0.00 4.00
2993 4916 0.532862 CGTGAAGTGAAGCCAGTGGT 60.533 55.000 11.74 0.00 0.00 4.16
2994 4917 1.230324 GTGAAGTGAAGCCAGTGGTC 58.770 55.000 11.74 1.50 0.00 4.02
2995 4918 0.249868 TGAAGTGAAGCCAGTGGTCG 60.250 55.000 11.74 0.00 0.00 4.79
2996 4919 1.569479 GAAGTGAAGCCAGTGGTCGC 61.569 60.000 11.74 8.12 0.00 5.19
2997 4920 2.031163 GTGAAGCCAGTGGTCGCT 59.969 61.111 11.74 0.00 36.74 4.93
2998 4921 2.031012 TGAAGCCAGTGGTCGCTG 59.969 61.111 11.74 4.67 34.94 5.18
2999 4922 3.426568 GAAGCCAGTGGTCGCTGC 61.427 66.667 11.74 0.00 34.94 5.25
3000 4923 3.890936 GAAGCCAGTGGTCGCTGCT 62.891 63.158 11.74 0.00 34.94 4.24
3001 4924 3.482232 AAGCCAGTGGTCGCTGCTT 62.482 57.895 11.74 3.56 34.94 3.91
3002 4925 3.426568 GCCAGTGGTCGCTGCTTC 61.427 66.667 11.74 0.00 35.28 3.86
3003 4926 2.345244 CCAGTGGTCGCTGCTTCT 59.655 61.111 0.00 0.00 35.28 2.85
3004 4927 2.031516 CCAGTGGTCGCTGCTTCTG 61.032 63.158 0.00 0.00 35.28 3.02
3005 4928 1.301244 CAGTGGTCGCTGCTTCTGT 60.301 57.895 0.00 0.00 0.00 3.41
3006 4929 1.005630 AGTGGTCGCTGCTTCTGTC 60.006 57.895 0.00 0.00 0.00 3.51
3007 4930 1.005630 GTGGTCGCTGCTTCTGTCT 60.006 57.895 0.00 0.00 0.00 3.41
3008 4931 0.601311 GTGGTCGCTGCTTCTGTCTT 60.601 55.000 0.00 0.00 0.00 3.01
3009 4932 0.319900 TGGTCGCTGCTTCTGTCTTC 60.320 55.000 0.00 0.00 0.00 2.87
3010 4933 1.347817 GGTCGCTGCTTCTGTCTTCG 61.348 60.000 0.00 0.00 0.00 3.79
3011 4934 1.080501 TCGCTGCTTCTGTCTTCGG 60.081 57.895 0.00 0.00 0.00 4.30
3012 4935 1.373497 CGCTGCTTCTGTCTTCGGT 60.373 57.895 0.00 0.00 0.00 4.69
3013 4936 1.621301 CGCTGCTTCTGTCTTCGGTG 61.621 60.000 0.00 0.00 0.00 4.94
3014 4937 0.319900 GCTGCTTCTGTCTTCGGTGA 60.320 55.000 0.00 0.00 0.00 4.02
3015 4938 1.873903 GCTGCTTCTGTCTTCGGTGAA 60.874 52.381 0.00 0.00 0.00 3.18
3016 4939 1.795286 CTGCTTCTGTCTTCGGTGAAC 59.205 52.381 0.00 0.00 0.00 3.18
3017 4940 0.784778 GCTTCTGTCTTCGGTGAACG 59.215 55.000 0.00 0.00 46.11 3.95
3018 4941 0.784778 CTTCTGTCTTCGGTGAACGC 59.215 55.000 0.00 0.00 43.86 4.84
3019 4942 0.937699 TTCTGTCTTCGGTGAACGCG 60.938 55.000 3.53 3.53 43.86 6.01
3020 4943 1.371267 CTGTCTTCGGTGAACGCGA 60.371 57.895 15.93 0.00 43.86 5.87
3021 4944 0.937699 CTGTCTTCGGTGAACGCGAA 60.938 55.000 15.93 0.00 43.86 4.70
3022 4945 0.937699 TGTCTTCGGTGAACGCGAAG 60.938 55.000 15.93 19.36 42.48 3.79
3023 4946 0.938168 GTCTTCGGTGAACGCGAAGT 60.938 55.000 15.93 0.00 42.14 3.01
3024 4947 0.937699 TCTTCGGTGAACGCGAAGTG 60.938 55.000 15.93 0.00 42.14 3.16
3025 4948 0.937699 CTTCGGTGAACGCGAAGTGA 60.938 55.000 15.93 0.00 43.07 3.41
3026 4949 0.528033 TTCGGTGAACGCGAAGTGAA 60.528 50.000 15.93 6.13 43.07 3.18
3027 4950 0.937699 TCGGTGAACGCGAAGTGAAG 60.938 55.000 15.93 0.00 43.07 3.02
3028 4951 1.204312 GGTGAACGCGAAGTGAAGC 59.796 57.895 15.93 0.00 43.07 3.86
3029 4952 1.204312 GTGAACGCGAAGTGAAGCC 59.796 57.895 15.93 0.00 43.07 4.35
3030 4953 1.227409 TGAACGCGAAGTGAAGCCA 60.227 52.632 15.93 0.00 43.07 4.75
3031 4954 0.812014 TGAACGCGAAGTGAAGCCAA 60.812 50.000 15.93 0.00 43.07 4.52
3032 4955 0.517316 GAACGCGAAGTGAAGCCAAT 59.483 50.000 15.93 0.00 43.07 3.16
3250 5173 2.581354 ATGGTCGCTGCCTCTGTC 59.419 61.111 0.00 0.00 0.00 3.51
3251 5174 1.986757 ATGGTCGCTGCCTCTGTCT 60.987 57.895 0.00 0.00 0.00 3.41
3252 5175 1.548357 ATGGTCGCTGCCTCTGTCTT 61.548 55.000 0.00 0.00 0.00 3.01
3253 5176 1.446966 GGTCGCTGCCTCTGTCTTC 60.447 63.158 0.00 0.00 0.00 2.87
3254 5177 1.446966 GTCGCTGCCTCTGTCTTCC 60.447 63.158 0.00 0.00 0.00 3.46
3255 5178 1.908299 TCGCTGCCTCTGTCTTCCA 60.908 57.895 0.00 0.00 0.00 3.53
3256 5179 1.220206 CGCTGCCTCTGTCTTCCAT 59.780 57.895 0.00 0.00 0.00 3.41
3257 5180 1.088340 CGCTGCCTCTGTCTTCCATG 61.088 60.000 0.00 0.00 0.00 3.66
3258 5181 0.251354 GCTGCCTCTGTCTTCCATGA 59.749 55.000 0.00 0.00 0.00 3.07
3259 5182 1.743091 GCTGCCTCTGTCTTCCATGAG 60.743 57.143 0.00 0.00 0.00 2.90
3260 5183 0.251354 TGCCTCTGTCTTCCATGAGC 59.749 55.000 0.00 0.00 0.00 4.26
3261 5184 0.809241 GCCTCTGTCTTCCATGAGCG 60.809 60.000 0.00 0.00 0.00 5.03
3262 5185 0.534412 CCTCTGTCTTCCATGAGCGT 59.466 55.000 0.00 0.00 0.00 5.07
3263 5186 1.638133 CTCTGTCTTCCATGAGCGTG 58.362 55.000 0.00 0.00 0.00 5.34
3264 5187 1.203287 CTCTGTCTTCCATGAGCGTGA 59.797 52.381 0.00 0.00 0.00 4.35
3265 5188 1.618343 TCTGTCTTCCATGAGCGTGAA 59.382 47.619 0.00 0.00 0.00 3.18
3266 5189 1.998315 CTGTCTTCCATGAGCGTGAAG 59.002 52.381 0.00 0.00 37.44 3.02
3281 5204 1.541588 GTGAAGTGAAGCCAATGGTCC 59.458 52.381 0.00 0.00 0.00 4.46
3307 5230 0.318699 CTGTCTTCGGTGAGCGTGAA 60.319 55.000 3.30 0.00 0.00 3.18
3308 5231 0.318699 TGTCTTCGGTGAGCGTGAAG 60.319 55.000 3.30 1.31 40.30 3.02
3309 5232 0.318784 GTCTTCGGTGAGCGTGAAGT 60.319 55.000 3.30 0.00 39.97 3.01
3310 5233 0.318699 TCTTCGGTGAGCGTGAAGTG 60.319 55.000 3.30 0.00 39.97 3.16
3311 5234 0.318699 CTTCGGTGAGCGTGAAGTGA 60.319 55.000 3.30 0.00 35.51 3.41
3312 5235 0.318699 TTCGGTGAGCGTGAAGTGAG 60.319 55.000 3.30 0.00 0.00 3.51
3313 5236 1.734477 CGGTGAGCGTGAAGTGAGG 60.734 63.158 0.00 0.00 0.00 3.86
3314 5237 2.029844 GGTGAGCGTGAAGTGAGGC 61.030 63.158 0.00 0.00 0.00 4.70
3315 5238 2.029844 GTGAGCGTGAAGTGAGGCC 61.030 63.158 0.00 0.00 0.00 5.19
3316 5239 2.343758 GAGCGTGAAGTGAGGCCA 59.656 61.111 5.01 0.00 0.00 5.36
3317 5240 1.301716 GAGCGTGAAGTGAGGCCAA 60.302 57.895 5.01 0.00 0.00 4.52
3318 5241 0.674895 GAGCGTGAAGTGAGGCCAAT 60.675 55.000 5.01 0.00 0.00 3.16
3319 5242 0.957395 AGCGTGAAGTGAGGCCAATG 60.957 55.000 5.01 0.00 0.00 2.82
3320 5243 1.926511 GCGTGAAGTGAGGCCAATGG 61.927 60.000 5.01 0.00 0.00 3.16
3321 5244 0.606401 CGTGAAGTGAGGCCAATGGT 60.606 55.000 5.01 0.00 0.00 3.55
3322 5245 1.168714 GTGAAGTGAGGCCAATGGTC 58.831 55.000 5.01 0.00 0.00 4.02
3323 5246 0.321564 TGAAGTGAGGCCAATGGTCG 60.322 55.000 5.01 0.00 29.39 4.79
3324 5247 1.648467 GAAGTGAGGCCAATGGTCGC 61.648 60.000 5.01 0.00 29.39 5.19
3325 5248 2.045926 GTGAGGCCAATGGTCGCT 60.046 61.111 9.37 0.00 29.39 4.93
3326 5249 2.046023 TGAGGCCAATGGTCGCTG 60.046 61.111 9.37 0.00 29.39 5.18
3327 5250 3.512516 GAGGCCAATGGTCGCTGC 61.513 66.667 5.01 0.00 29.39 5.25
3330 5253 3.512516 GCCAATGGTCGCTGCCTC 61.513 66.667 0.00 0.00 0.00 4.70
3331 5254 2.270205 CCAATGGTCGCTGCCTCT 59.730 61.111 0.00 0.00 0.00 3.69
3332 5255 2.110967 CCAATGGTCGCTGCCTCTG 61.111 63.158 0.00 0.00 0.00 3.35
3333 5256 1.376424 CAATGGTCGCTGCCTCTGT 60.376 57.895 0.00 0.00 0.00 3.41
3334 5257 1.078848 AATGGTCGCTGCCTCTGTC 60.079 57.895 0.00 0.00 0.00 3.51
3335 5258 1.548357 AATGGTCGCTGCCTCTGTCT 61.548 55.000 0.00 0.00 0.00 3.41
3336 5259 1.954362 ATGGTCGCTGCCTCTGTCTC 61.954 60.000 0.00 0.00 0.00 3.36
3337 5260 2.183046 GTCGCTGCCTCTGTCTCC 59.817 66.667 0.00 0.00 0.00 3.71
3338 5261 3.443925 TCGCTGCCTCTGTCTCCG 61.444 66.667 0.00 0.00 0.00 4.63
3339 5262 4.504916 CGCTGCCTCTGTCTCCGG 62.505 72.222 0.00 0.00 0.00 5.14
3340 5263 3.386237 GCTGCCTCTGTCTCCGGT 61.386 66.667 0.00 0.00 0.00 5.28
3341 5264 2.575993 CTGCCTCTGTCTCCGGTG 59.424 66.667 0.00 0.00 0.00 4.94
3342 5265 1.979155 CTGCCTCTGTCTCCGGTGA 60.979 63.158 0.00 0.06 0.00 4.02
3343 5266 1.943116 CTGCCTCTGTCTCCGGTGAG 61.943 65.000 6.43 5.48 40.17 3.51
3344 5267 2.888863 CCTCTGTCTCCGGTGAGC 59.111 66.667 6.43 3.04 38.58 4.26
3345 5268 2.487428 CTCTGTCTCCGGTGAGCG 59.513 66.667 6.43 0.00 38.58 5.03
3346 5269 2.282251 TCTGTCTCCGGTGAGCGT 60.282 61.111 6.43 0.00 38.58 5.07
3347 5270 2.126307 CTGTCTCCGGTGAGCGTG 60.126 66.667 6.43 0.00 38.58 5.34
3348 5271 2.596338 TGTCTCCGGTGAGCGTGA 60.596 61.111 6.43 0.00 38.58 4.35
3352 5275 0.607217 TCTCCGGTGAGCGTGAAGTA 60.607 55.000 0.00 0.00 38.58 2.24
3364 5287 2.030274 GCGTGAAGTAAAGCCAATGGTT 60.030 45.455 0.00 0.00 0.00 3.67
3444 9352 0.723981 GAGCATGAAGTCAAGCCGAC 59.276 55.000 4.97 0.00 45.77 4.79
3479 9387 4.478195 GTGACGACACCTGGATCG 57.522 61.111 18.84 18.84 43.97 3.69
3741 9650 1.202639 CGTTATGCTGGTAGCCATCCA 60.203 52.381 0.00 0.00 41.51 3.41
3802 9714 0.392327 GAGGGAGCCTTTCTCTGCAC 60.392 60.000 0.00 0.00 36.51 4.57
3822 9734 3.062099 CACGTCTGCATAGCGTTATGTTT 59.938 43.478 18.82 0.00 39.12 2.83
3890 9802 5.878406 ATCACCTTCTCTAATTCGGACAT 57.122 39.130 0.00 0.00 0.00 3.06
3935 9847 3.994204 AACATTGGGTAAACAACGGTC 57.006 42.857 0.00 0.00 32.39 4.79
3936 9848 3.217681 ACATTGGGTAAACAACGGTCT 57.782 42.857 0.00 0.00 32.39 3.85
4000 9913 6.604795 AGTGCAAGCCATTATCTTTGTTAGAT 59.395 34.615 0.00 0.00 45.59 1.98
4001 9914 7.775093 AGTGCAAGCCATTATCTTTGTTAGATA 59.225 33.333 0.00 0.00 41.89 1.98
4002 9915 7.857885 GTGCAAGCCATTATCTTTGTTAGATAC 59.142 37.037 0.00 0.00 43.82 2.24
4003 9916 7.775093 TGCAAGCCATTATCTTTGTTAGATACT 59.225 33.333 0.00 0.00 43.82 2.12
4004 9917 8.286097 GCAAGCCATTATCTTTGTTAGATACTC 58.714 37.037 0.00 0.00 43.82 2.59
4005 9918 8.778358 CAAGCCATTATCTTTGTTAGATACTCC 58.222 37.037 0.00 0.00 43.82 3.85
4006 9919 8.268878 AGCCATTATCTTTGTTAGATACTCCT 57.731 34.615 0.00 0.00 43.82 3.69
4007 9920 8.371699 AGCCATTATCTTTGTTAGATACTCCTC 58.628 37.037 0.00 0.00 43.82 3.71
4008 9921 7.604545 GCCATTATCTTTGTTAGATACTCCTCC 59.395 40.741 0.00 0.00 43.82 4.30
4009 9922 7.815068 CCATTATCTTTGTTAGATACTCCTCCG 59.185 40.741 0.00 0.00 43.82 4.63
4010 9923 7.893124 TTATCTTTGTTAGATACTCCTCCGT 57.107 36.000 0.00 0.00 43.82 4.69
4011 9924 5.831702 TCTTTGTTAGATACTCCTCCGTC 57.168 43.478 0.00 0.00 0.00 4.79
4012 9925 4.643784 TCTTTGTTAGATACTCCTCCGTCC 59.356 45.833 0.00 0.00 0.00 4.79
4013 9926 3.657398 TGTTAGATACTCCTCCGTCCA 57.343 47.619 0.00 0.00 0.00 4.02
4014 9927 3.972133 TGTTAGATACTCCTCCGTCCAA 58.028 45.455 0.00 0.00 0.00 3.53
4015 9928 3.698040 TGTTAGATACTCCTCCGTCCAAC 59.302 47.826 0.00 0.00 0.00 3.77
4016 9929 1.390565 AGATACTCCTCCGTCCAACG 58.609 55.000 0.00 0.00 42.11 4.10
4017 9930 1.101331 GATACTCCTCCGTCCAACGT 58.899 55.000 0.00 0.00 40.58 3.99
4018 9931 1.475682 GATACTCCTCCGTCCAACGTT 59.524 52.381 0.00 0.00 40.58 3.99
4019 9932 1.331214 TACTCCTCCGTCCAACGTTT 58.669 50.000 0.00 0.00 40.58 3.60
4020 9933 0.466963 ACTCCTCCGTCCAACGTTTT 59.533 50.000 0.00 0.00 40.58 2.43
4021 9934 1.134310 ACTCCTCCGTCCAACGTTTTT 60.134 47.619 0.00 0.00 40.58 1.94
4045 9958 6.944557 TGACACTGTCAACGTTCTTATATG 57.055 37.500 9.54 0.00 39.78 1.78
4046 9959 5.867174 TGACACTGTCAACGTTCTTATATGG 59.133 40.000 9.54 0.00 39.78 2.74
4047 9960 5.175859 ACACTGTCAACGTTCTTATATGGG 58.824 41.667 0.00 0.00 0.00 4.00
4048 9961 5.046878 ACACTGTCAACGTTCTTATATGGGA 60.047 40.000 0.00 0.00 0.00 4.37
4049 9962 6.049149 CACTGTCAACGTTCTTATATGGGAT 58.951 40.000 0.00 0.00 0.00 3.85
4050 9963 6.018751 CACTGTCAACGTTCTTATATGGGATG 60.019 42.308 0.00 0.00 0.00 3.51
4051 9964 5.364778 TGTCAACGTTCTTATATGGGATGG 58.635 41.667 0.00 0.00 0.00 3.51
4052 9965 5.129650 TGTCAACGTTCTTATATGGGATGGA 59.870 40.000 0.00 0.00 0.00 3.41
4053 9966 5.696724 GTCAACGTTCTTATATGGGATGGAG 59.303 44.000 0.00 0.00 0.00 3.86
4054 9967 5.365605 TCAACGTTCTTATATGGGATGGAGT 59.634 40.000 0.00 0.00 0.00 3.85
4055 9968 5.215252 ACGTTCTTATATGGGATGGAGTG 57.785 43.478 0.00 0.00 0.00 3.51
4056 9969 4.654262 ACGTTCTTATATGGGATGGAGTGT 59.346 41.667 0.00 0.00 0.00 3.55
4057 9970 5.221461 ACGTTCTTATATGGGATGGAGTGTC 60.221 44.000 0.00 0.00 0.00 3.67
4058 9971 5.221441 CGTTCTTATATGGGATGGAGTGTCA 60.221 44.000 0.00 0.00 0.00 3.58
4059 9972 6.591935 GTTCTTATATGGGATGGAGTGTCAA 58.408 40.000 0.00 0.00 0.00 3.18
4060 9973 6.823286 TCTTATATGGGATGGAGTGTCAAA 57.177 37.500 0.00 0.00 0.00 2.69
4061 9974 7.206789 TCTTATATGGGATGGAGTGTCAAAA 57.793 36.000 0.00 0.00 0.00 2.44
4062 9975 7.638444 TCTTATATGGGATGGAGTGTCAAAAA 58.362 34.615 0.00 0.00 0.00 1.94
4063 9976 7.556275 TCTTATATGGGATGGAGTGTCAAAAAC 59.444 37.037 0.00 0.00 0.00 2.43
4064 9977 2.226330 TGGGATGGAGTGTCAAAAACG 58.774 47.619 0.00 0.00 0.00 3.60
4065 9978 2.227194 GGGATGGAGTGTCAAAAACGT 58.773 47.619 0.00 0.00 0.00 3.99
4066 9979 3.181453 TGGGATGGAGTGTCAAAAACGTA 60.181 43.478 0.00 0.00 0.00 3.57
4067 9980 4.007659 GGGATGGAGTGTCAAAAACGTAT 58.992 43.478 0.00 0.00 0.00 3.06
4068 9981 4.142687 GGGATGGAGTGTCAAAAACGTATG 60.143 45.833 0.00 0.00 0.00 2.39
4069 9982 4.454504 GGATGGAGTGTCAAAAACGTATGT 59.545 41.667 0.00 0.00 0.00 2.29
4070 9983 5.048991 GGATGGAGTGTCAAAAACGTATGTT 60.049 40.000 0.00 0.00 40.98 2.71
4071 9984 6.148150 GGATGGAGTGTCAAAAACGTATGTTA 59.852 38.462 0.00 0.00 37.31 2.41
4072 9985 7.148306 GGATGGAGTGTCAAAAACGTATGTTAT 60.148 37.037 0.00 0.00 37.31 1.89
4073 9986 6.893759 TGGAGTGTCAAAAACGTATGTTATG 58.106 36.000 0.00 4.18 37.31 1.90
4074 9987 6.072948 TGGAGTGTCAAAAACGTATGTTATGG 60.073 38.462 0.00 0.00 37.31 2.74
4075 9988 6.249035 AGTGTCAAAAACGTATGTTATGGG 57.751 37.500 0.00 0.00 37.31 4.00
4076 9989 5.998981 AGTGTCAAAAACGTATGTTATGGGA 59.001 36.000 0.00 0.00 37.31 4.37
4077 9990 6.072893 AGTGTCAAAAACGTATGTTATGGGAC 60.073 38.462 0.00 7.60 37.31 4.46
4078 9991 5.181622 TGTCAAAAACGTATGTTATGGGACC 59.818 40.000 0.00 0.00 37.31 4.46
4079 9992 4.392445 TCAAAAACGTATGTTATGGGACCG 59.608 41.667 0.00 0.00 37.31 4.79
4080 9993 2.607631 AACGTATGTTATGGGACCGG 57.392 50.000 0.00 0.00 36.28 5.28
4081 9994 0.754472 ACGTATGTTATGGGACCGGG 59.246 55.000 6.32 0.00 0.00 5.73
4082 9995 0.034337 CGTATGTTATGGGACCGGGG 59.966 60.000 6.32 0.00 0.00 5.73
4083 9996 0.399075 GTATGTTATGGGACCGGGGG 59.601 60.000 6.32 0.00 0.00 5.40
4084 9997 0.268263 TATGTTATGGGACCGGGGGA 59.732 55.000 6.32 0.00 0.00 4.81
4085 9998 1.060163 ATGTTATGGGACCGGGGGAG 61.060 60.000 6.32 0.00 0.00 4.30
4149 10062 1.113517 ACGTGCACCACCAGTCTACT 61.114 55.000 12.15 0.00 0.00 2.57
4159 10072 3.006967 CCACCAGTCTACTACAAGCAAGT 59.993 47.826 0.00 0.00 0.00 3.16
4174 10132 7.149202 ACAAGCAAGTATTTCCCCATATCTA 57.851 36.000 0.00 0.00 0.00 1.98
4175 10133 7.582719 ACAAGCAAGTATTTCCCCATATCTAA 58.417 34.615 0.00 0.00 0.00 2.10
4182 10140 3.439857 TTCCCCATATCTAAGCCATGC 57.560 47.619 0.00 0.00 0.00 4.06
4203 10161 1.679898 CCAAGTGAGTGAGGACCCC 59.320 63.158 0.00 0.00 0.00 4.95
4209 10167 1.906574 GTGAGTGAGGACCCCACATAA 59.093 52.381 9.04 0.00 37.01 1.90
4211 10169 3.054361 GTGAGTGAGGACCCCACATAAAT 60.054 47.826 9.04 0.00 37.01 1.40
4271 10233 2.867624 ACCACAACTTGATCTGCATGT 58.132 42.857 0.00 0.00 36.53 3.21
4312 10274 3.808466 TGCAAAATGCTAAACCACACA 57.192 38.095 3.78 0.00 45.31 3.72
4330 10292 1.229927 AGCAAACTTGTGGGCTGGA 59.770 52.632 0.00 0.00 34.83 3.86
4336 10298 1.270907 ACTTGTGGGCTGGAGTAGAG 58.729 55.000 0.00 0.00 0.00 2.43
4339 10301 0.335019 TGTGGGCTGGAGTAGAGCTA 59.665 55.000 0.00 0.00 36.63 3.32
4340 10302 0.747852 GTGGGCTGGAGTAGAGCTAC 59.252 60.000 0.00 0.00 36.63 3.58
4348 10310 2.651232 GTAGAGCTACGGCGTGCG 60.651 66.667 24.86 14.67 44.37 5.34
4409 10371 2.167693 TGCGACCCTGTGAACCTATTAG 59.832 50.000 0.00 0.00 0.00 1.73
4430 10412 3.691342 CGGGTTCTCTCGGGTGCA 61.691 66.667 0.00 0.00 0.00 4.57
4446 10428 2.501723 GGTGCAGAAGAAGATGGAGGTA 59.498 50.000 0.00 0.00 0.00 3.08
4450 10432 3.563390 GCAGAAGAAGATGGAGGTAATGC 59.437 47.826 0.00 0.00 0.00 3.56
4460 10442 4.574674 TGGAGGTAATGCTGTTGAGATT 57.425 40.909 0.00 0.00 0.00 2.40
4527 10520 6.870971 AATAGCGGTAAGTTTGTTGAAGAA 57.129 33.333 0.00 0.00 0.00 2.52
4565 10559 6.275335 AGAATTTGTGGAGTTTTGTGATGTG 58.725 36.000 0.00 0.00 0.00 3.21
4577 10571 5.420725 TTTGTGATGTGCTAGTCCTATGT 57.579 39.130 0.00 0.00 0.00 2.29
4589 10583 6.183361 TGCTAGTCCTATGTAATGCTGTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.209410 AGAGTCACTGTTTTGCTTCCAG 58.791 45.455 0.00 0.00 0.00 3.86
30 31 0.959553 TTCCTTTCGCGAGAGTCACT 59.040 50.000 23.28 0.00 43.69 3.41
208 236 2.607187 CACGAGAGGTATGGTTGTGTC 58.393 52.381 0.00 0.00 0.00 3.67
217 245 3.008049 AGTTTTGCTTCCACGAGAGGTAT 59.992 43.478 0.00 0.00 0.00 2.73
219 247 1.141053 AGTTTTGCTTCCACGAGAGGT 59.859 47.619 0.00 0.00 0.00 3.85
279 317 2.677979 GCCGTGCCTCTCGAAAACC 61.678 63.158 0.00 0.00 0.00 3.27
334 374 1.597663 CGAGAGTCACGGTTTTGCTTT 59.402 47.619 1.62 0.00 0.00 3.51
404 448 2.686956 TTTTCGCGAGAGTCACGGCA 62.687 55.000 9.59 0.00 43.69 5.69
454 523 8.026607 TCCCTAGCTTTTCAATACAAAAATTCG 58.973 33.333 0.00 0.00 0.00 3.34
538 610 3.984508 TTTTCCATACGCGTTTTTGGA 57.015 38.095 25.31 25.31 36.49 3.53
603 678 1.449246 GCGCTCTCAGCCATTCACT 60.449 57.895 0.00 0.00 38.18 3.41
636 711 2.702751 TTCGGAAGCCTCGCAACGAA 62.703 55.000 0.00 0.00 37.64 3.85
676 751 1.002087 CTGGTAGCCAAAACCGAGAGT 59.998 52.381 0.00 0.00 40.08 3.24
693 768 4.586841 TCCTGGTAAAATTTGTTCACCTGG 59.413 41.667 20.20 20.20 45.10 4.45
696 771 4.830600 TCCTCCTGGTAAAATTTGTTCACC 59.169 41.667 0.00 0.00 34.23 4.02
705 780 7.014808 TCGTTTTGAAATTCCTCCTGGTAAAAT 59.985 33.333 0.00 0.00 34.23 1.82
714 790 3.190744 GTCCCTCGTTTTGAAATTCCTCC 59.809 47.826 0.00 0.00 0.00 4.30
729 805 1.560923 CTATCGTTTGCAGTCCCTCG 58.439 55.000 0.00 0.00 0.00 4.63
787 863 4.109675 ATGTGGTAGGTGGGCCGC 62.110 66.667 9.05 9.05 40.50 6.53
798 874 0.690762 GTAGGGTGGTGTGATGTGGT 59.309 55.000 0.00 0.00 0.00 4.16
983 1074 2.416923 ATCCTCCTCCTCCTCCCCC 61.417 68.421 0.00 0.00 0.00 5.40
984 1075 1.152139 CATCCTCCTCCTCCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
985 1076 1.841103 GCATCCTCCTCCTCCTCCC 60.841 68.421 0.00 0.00 0.00 4.30
986 1077 1.841103 GGCATCCTCCTCCTCCTCC 60.841 68.421 0.00 0.00 0.00 4.30
987 1078 1.841103 GGGCATCCTCCTCCTCCTC 60.841 68.421 0.00 0.00 0.00 3.71
988 1079 2.288643 GGGCATCCTCCTCCTCCT 59.711 66.667 0.00 0.00 0.00 3.69
989 1080 3.237741 CGGGCATCCTCCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
990 1081 2.444895 ACGGGCATCCTCCTCCTC 60.445 66.667 0.00 0.00 0.00 3.71
991 1082 2.765807 CACGGGCATCCTCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
1020 1111 3.154473 TCCTCGCCCTTGATCCCG 61.154 66.667 0.00 0.00 0.00 5.14
1053 1144 0.830444 TGGTGGTAGGAGTTGTCGCT 60.830 55.000 0.00 0.00 0.00 4.93
1122 1213 2.356780 GGGTTCCGGACGGAGATGT 61.357 63.158 13.64 0.00 46.06 3.06
1168 1264 1.371183 CCAGCACGAGAAACCCTCA 59.629 57.895 0.00 0.00 42.06 3.86
1229 1325 0.546507 ACCGCCCAAAATCCCCAAAT 60.547 50.000 0.00 0.00 0.00 2.32
1230 1326 1.152226 ACCGCCCAAAATCCCCAAA 60.152 52.632 0.00 0.00 0.00 3.28
1247 1343 0.741221 GCTCCACGGTTCATCTCCAC 60.741 60.000 0.00 0.00 0.00 4.02
1248 1344 1.191489 TGCTCCACGGTTCATCTCCA 61.191 55.000 0.00 0.00 0.00 3.86
1264 1360 4.280494 ACACGACGCTCGGTTGCT 62.280 61.111 11.13 0.00 45.59 3.91
1265 1361 4.059459 CACACGACGCTCGGTTGC 62.059 66.667 11.13 0.00 45.59 4.17
1266 1362 2.235016 AACACACGACGCTCGGTTG 61.235 57.895 11.13 9.44 45.59 3.77
1267 1363 2.105528 AACACACGACGCTCGGTT 59.894 55.556 11.13 4.34 45.59 4.44
1268 1364 2.616786 TTCAACACACGACGCTCGGT 62.617 55.000 11.13 4.71 45.59 4.69
1269 1365 1.947146 TTCAACACACGACGCTCGG 60.947 57.895 11.13 4.22 45.59 4.63
1270 1366 1.198397 GTTCAACACACGACGCTCG 59.802 57.895 0.00 5.97 46.93 5.03
1275 1371 1.859080 GACCAGAGTTCAACACACGAC 59.141 52.381 0.00 0.00 0.00 4.34
1276 1372 1.535226 CGACCAGAGTTCAACACACGA 60.535 52.381 0.00 0.00 0.00 4.35
1277 1373 0.852777 CGACCAGAGTTCAACACACG 59.147 55.000 0.00 0.00 0.00 4.49
1278 1374 2.218953 TCGACCAGAGTTCAACACAC 57.781 50.000 0.00 0.00 0.00 3.82
1287 1383 0.976641 TGCCTGAAATCGACCAGAGT 59.023 50.000 11.50 0.00 32.37 3.24
1289 1385 1.066858 GTCTGCCTGAAATCGACCAGA 60.067 52.381 11.50 2.55 32.37 3.86
1290 1386 1.338105 TGTCTGCCTGAAATCGACCAG 60.338 52.381 0.00 0.00 0.00 4.00
1291 1387 0.684535 TGTCTGCCTGAAATCGACCA 59.315 50.000 0.00 0.00 0.00 4.02
1292 1388 1.808411 TTGTCTGCCTGAAATCGACC 58.192 50.000 0.00 0.00 0.00 4.79
1293 1389 2.744202 ACATTGTCTGCCTGAAATCGAC 59.256 45.455 0.00 0.00 0.00 4.20
1294 1390 3.057969 ACATTGTCTGCCTGAAATCGA 57.942 42.857 0.00 0.00 0.00 3.59
1296 1392 3.841643 CCAACATTGTCTGCCTGAAATC 58.158 45.455 0.00 0.00 0.00 2.17
1298 1394 1.340889 GCCAACATTGTCTGCCTGAAA 59.659 47.619 0.00 0.00 0.00 2.69
1299 1395 0.961019 GCCAACATTGTCTGCCTGAA 59.039 50.000 0.00 0.00 0.00 3.02
1301 1397 0.242825 CAGCCAACATTGTCTGCCTG 59.757 55.000 6.83 2.56 0.00 4.85
1302 1398 0.111061 TCAGCCAACATTGTCTGCCT 59.889 50.000 0.00 0.00 0.00 4.75
1305 1401 2.352651 CGGTATCAGCCAACATTGTCTG 59.647 50.000 0.00 0.00 0.00 3.51
1306 1402 2.027192 ACGGTATCAGCCAACATTGTCT 60.027 45.455 0.00 0.00 0.00 3.41
1308 1404 2.083774 CACGGTATCAGCCAACATTGT 58.916 47.619 0.00 0.00 0.00 2.71
1309 1405 1.202177 GCACGGTATCAGCCAACATTG 60.202 52.381 0.00 0.00 0.00 2.82
1310 1406 1.094785 GCACGGTATCAGCCAACATT 58.905 50.000 0.00 0.00 0.00 2.71
1311 1407 1.089481 CGCACGGTATCAGCCAACAT 61.089 55.000 0.00 0.00 0.00 2.71
1312 1408 1.739929 CGCACGGTATCAGCCAACA 60.740 57.895 0.00 0.00 0.00 3.33
1313 1409 1.017177 TTCGCACGGTATCAGCCAAC 61.017 55.000 0.00 0.00 0.00 3.77
1314 1410 0.107897 ATTCGCACGGTATCAGCCAA 60.108 50.000 0.00 0.00 0.00 4.52
1315 1411 0.107897 AATTCGCACGGTATCAGCCA 60.108 50.000 0.00 0.00 0.00 4.75
1316 1412 0.582005 GAATTCGCACGGTATCAGCC 59.418 55.000 0.00 0.00 0.00 4.85
1317 1413 1.258982 CAGAATTCGCACGGTATCAGC 59.741 52.381 0.00 0.00 0.00 4.26
1318 1414 2.540515 ACAGAATTCGCACGGTATCAG 58.459 47.619 0.00 0.00 0.00 2.90
1319 1415 2.665649 ACAGAATTCGCACGGTATCA 57.334 45.000 0.00 0.00 0.00 2.15
1321 1417 5.172934 TCTTAAACAGAATTCGCACGGTAT 58.827 37.500 0.00 0.00 0.00 2.73
1323 1419 3.395639 TCTTAAACAGAATTCGCACGGT 58.604 40.909 0.00 0.00 0.00 4.83
1325 1421 4.783036 CACATCTTAAACAGAATTCGCACG 59.217 41.667 0.00 0.00 34.16 5.34
1328 1424 4.098416 GCCACATCTTAAACAGAATTCGC 58.902 43.478 0.00 0.00 34.16 4.70
1341 1437 6.552445 AATTCAGTACTCTAGCCACATCTT 57.448 37.500 0.00 0.00 0.00 2.40
1342 1438 6.552445 AAATTCAGTACTCTAGCCACATCT 57.448 37.500 0.00 0.00 0.00 2.90
1355 1455 8.087982 TGACATTCTCAGACAAAATTCAGTAC 57.912 34.615 0.00 0.00 0.00 2.73
1370 1470 4.756642 GTGAGGAACATGTTGACATTCTCA 59.243 41.667 17.58 8.64 33.61 3.27
1400 1500 8.484214 TTGCATGTATAAAAATAGCCCCAATA 57.516 30.769 0.00 0.00 0.00 1.90
1434 1534 3.492482 CCCCAAATTTTCACGACAAAGCT 60.492 43.478 0.00 0.00 0.00 3.74
1475 1575 7.281774 ACTGCTGGAATCATTTGAATACTACAG 59.718 37.037 0.00 0.00 0.00 2.74
1511 1611 7.882179 ACTTACAAGTTCCAAACATGAATACC 58.118 34.615 0.00 0.00 35.21 2.73
1594 1694 8.171840 GCTCTGTTAAGCTACAAATTCAGTAAG 58.828 37.037 0.00 0.00 39.27 2.34
1603 1704 8.668353 CATTTATCTGCTCTGTTAAGCTACAAA 58.332 33.333 0.00 0.00 42.94 2.83
1606 1707 6.258727 TGCATTTATCTGCTCTGTTAAGCTAC 59.741 38.462 0.00 0.00 42.94 3.58
1638 1739 3.955650 TGTAGGCACTGTAAGAAGGAC 57.044 47.619 0.00 0.00 41.52 3.85
1669 1770 6.228616 ACTTGAATCTTAGGAGTTAGGAGC 57.771 41.667 0.00 0.00 0.00 4.70
1670 1771 9.974980 GAATACTTGAATCTTAGGAGTTAGGAG 57.025 37.037 0.00 0.00 0.00 3.69
1671 1772 9.488762 TGAATACTTGAATCTTAGGAGTTAGGA 57.511 33.333 0.00 0.00 0.00 2.94
1675 1776 9.793259 TTGTTGAATACTTGAATCTTAGGAGTT 57.207 29.630 0.00 0.00 0.00 3.01
1676 1777 9.220767 GTTGTTGAATACTTGAATCTTAGGAGT 57.779 33.333 0.00 0.00 0.00 3.85
1677 1778 9.442047 AGTTGTTGAATACTTGAATCTTAGGAG 57.558 33.333 0.00 0.00 0.00 3.69
1678 1779 9.219603 CAGTTGTTGAATACTTGAATCTTAGGA 57.780 33.333 0.00 0.00 0.00 2.94
1679 1780 9.219603 TCAGTTGTTGAATACTTGAATCTTAGG 57.780 33.333 0.00 0.00 31.34 2.69
1682 1783 9.125026 AGTTCAGTTGTTGAATACTTGAATCTT 57.875 29.630 0.00 0.00 46.85 2.40
1683 1784 8.682936 AGTTCAGTTGTTGAATACTTGAATCT 57.317 30.769 0.00 0.00 46.85 2.40
1684 1785 7.742089 CGAGTTCAGTTGTTGAATACTTGAATC 59.258 37.037 0.00 0.00 46.85 2.52
1685 1786 7.307989 CCGAGTTCAGTTGTTGAATACTTGAAT 60.308 37.037 0.00 0.00 46.85 2.57
1686 1787 6.018262 CCGAGTTCAGTTGTTGAATACTTGAA 60.018 38.462 0.00 0.00 46.85 2.69
1687 1788 5.465390 CCGAGTTCAGTTGTTGAATACTTGA 59.535 40.000 0.00 0.00 46.85 3.02
1688 1789 5.236478 ACCGAGTTCAGTTGTTGAATACTTG 59.764 40.000 0.00 0.00 46.85 3.16
1689 1790 5.365619 ACCGAGTTCAGTTGTTGAATACTT 58.634 37.500 0.00 0.00 46.85 2.24
1690 1791 4.957296 ACCGAGTTCAGTTGTTGAATACT 58.043 39.130 0.00 0.00 46.85 2.12
1691 1792 4.748102 TGACCGAGTTCAGTTGTTGAATAC 59.252 41.667 0.00 0.00 46.85 1.89
1692 1793 4.951254 TGACCGAGTTCAGTTGTTGAATA 58.049 39.130 0.00 0.00 46.85 1.75
1693 1794 3.804036 TGACCGAGTTCAGTTGTTGAAT 58.196 40.909 0.00 0.00 46.85 2.57
1694 1795 3.254470 TGACCGAGTTCAGTTGTTGAA 57.746 42.857 0.00 0.00 43.40 2.69
1695 1796 2.971660 TGACCGAGTTCAGTTGTTGA 57.028 45.000 0.00 0.00 0.00 3.18
1696 1797 3.058914 GGATTGACCGAGTTCAGTTGTTG 60.059 47.826 0.00 0.00 0.00 3.33
1697 1798 3.139077 GGATTGACCGAGTTCAGTTGTT 58.861 45.455 0.00 0.00 0.00 2.83
1698 1799 2.104111 TGGATTGACCGAGTTCAGTTGT 59.896 45.455 0.00 0.00 42.61 3.32
1699 1800 2.738846 CTGGATTGACCGAGTTCAGTTG 59.261 50.000 0.00 0.00 42.61 3.16
1700 1801 2.872038 GCTGGATTGACCGAGTTCAGTT 60.872 50.000 0.00 0.00 42.61 3.16
1701 1802 1.338200 GCTGGATTGACCGAGTTCAGT 60.338 52.381 0.00 0.00 42.61 3.41
1702 1803 1.363744 GCTGGATTGACCGAGTTCAG 58.636 55.000 0.00 0.00 42.61 3.02
1703 1804 0.389817 CGCTGGATTGACCGAGTTCA 60.390 55.000 0.00 0.00 42.61 3.18
1704 1805 0.108804 TCGCTGGATTGACCGAGTTC 60.109 55.000 0.00 0.00 42.61 3.01
1705 1806 0.108615 CTCGCTGGATTGACCGAGTT 60.109 55.000 0.00 0.00 41.47 3.01
1706 1807 1.513158 CTCGCTGGATTGACCGAGT 59.487 57.895 0.00 0.00 41.47 4.18
1707 1808 4.409342 CTCGCTGGATTGACCGAG 57.591 61.111 0.00 0.00 42.61 4.63
1708 1809 1.215382 CACTCGCTGGATTGACCGA 59.785 57.895 0.00 0.00 42.61 4.69
1709 1810 2.456119 GCACTCGCTGGATTGACCG 61.456 63.158 0.00 0.00 42.61 4.79
1710 1811 2.456119 CGCACTCGCTGGATTGACC 61.456 63.158 0.00 0.00 39.54 4.02
1711 1812 3.084579 CGCACTCGCTGGATTGAC 58.915 61.111 0.00 0.00 35.30 3.18
1733 1834 8.944029 TGGTTTGTTATTGGAAATGCATATTTG 58.056 29.630 0.00 0.00 36.66 2.32
1734 1835 8.945057 GTGGTTTGTTATTGGAAATGCATATTT 58.055 29.630 0.00 0.00 39.16 1.40
1735 1836 7.277539 CGTGGTTTGTTATTGGAAATGCATATT 59.722 33.333 0.00 0.00 0.00 1.28
1736 1837 6.756074 CGTGGTTTGTTATTGGAAATGCATAT 59.244 34.615 0.00 0.00 0.00 1.78
1737 1838 6.071896 TCGTGGTTTGTTATTGGAAATGCATA 60.072 34.615 0.00 0.00 0.00 3.14
1738 1839 4.928615 CGTGGTTTGTTATTGGAAATGCAT 59.071 37.500 0.00 0.00 0.00 3.96
1739 1840 4.038042 TCGTGGTTTGTTATTGGAAATGCA 59.962 37.500 0.00 0.00 0.00 3.96
1740 1841 4.384547 GTCGTGGTTTGTTATTGGAAATGC 59.615 41.667 0.00 0.00 0.00 3.56
1741 1842 5.768317 AGTCGTGGTTTGTTATTGGAAATG 58.232 37.500 0.00 0.00 0.00 2.32
1742 1843 6.713450 ACTAGTCGTGGTTTGTTATTGGAAAT 59.287 34.615 0.00 0.00 0.00 2.17
1743 1844 6.056884 ACTAGTCGTGGTTTGTTATTGGAAA 58.943 36.000 0.00 0.00 0.00 3.13
1744 1845 5.613329 ACTAGTCGTGGTTTGTTATTGGAA 58.387 37.500 0.00 0.00 0.00 3.53
1745 1846 5.217978 ACTAGTCGTGGTTTGTTATTGGA 57.782 39.130 0.00 0.00 0.00 3.53
1746 1847 5.467399 TCAACTAGTCGTGGTTTGTTATTGG 59.533 40.000 0.00 0.00 0.00 3.16
1747 1848 6.533819 TCAACTAGTCGTGGTTTGTTATTG 57.466 37.500 0.00 0.00 0.00 1.90
1748 1849 7.739498 ATTCAACTAGTCGTGGTTTGTTATT 57.261 32.000 0.00 0.00 0.00 1.40
1751 1852 8.879759 CATATATTCAACTAGTCGTGGTTTGTT 58.120 33.333 0.00 0.00 0.00 2.83
1752 1853 8.038944 ACATATATTCAACTAGTCGTGGTTTGT 58.961 33.333 0.00 0.00 0.00 2.83
1753 1854 8.420374 ACATATATTCAACTAGTCGTGGTTTG 57.580 34.615 0.00 0.00 0.00 2.93
1755 1856 9.692749 CATACATATATTCAACTAGTCGTGGTT 57.307 33.333 0.00 0.00 0.00 3.67
1756 1857 7.813148 GCATACATATATTCAACTAGTCGTGGT 59.187 37.037 0.00 0.00 0.00 4.16
1757 1858 7.812669 TGCATACATATATTCAACTAGTCGTGG 59.187 37.037 0.00 0.00 0.00 4.94
1758 1859 8.742554 TGCATACATATATTCAACTAGTCGTG 57.257 34.615 0.00 0.00 0.00 4.35
1759 1860 8.577296 ACTGCATACATATATTCAACTAGTCGT 58.423 33.333 0.00 0.00 0.00 4.34
1760 1861 8.972262 ACTGCATACATATATTCAACTAGTCG 57.028 34.615 0.00 0.00 0.00 4.18
1762 1863 9.411801 CGAACTGCATACATATATTCAACTAGT 57.588 33.333 0.00 0.00 0.00 2.57
1763 1864 9.626045 TCGAACTGCATACATATATTCAACTAG 57.374 33.333 0.00 0.00 0.00 2.57
1764 1865 9.406828 GTCGAACTGCATACATATATTCAACTA 57.593 33.333 0.00 0.00 0.00 2.24
1765 1866 8.144478 AGTCGAACTGCATACATATATTCAACT 58.856 33.333 0.00 0.00 0.00 3.16
1766 1867 8.217115 CAGTCGAACTGCATACATATATTCAAC 58.783 37.037 0.00 0.00 39.62 3.18
1767 1868 7.384932 CCAGTCGAACTGCATACATATATTCAA 59.615 37.037 8.85 0.00 44.63 2.69
1768 1869 6.868339 CCAGTCGAACTGCATACATATATTCA 59.132 38.462 8.85 0.00 44.63 2.57
1769 1870 6.183360 GCCAGTCGAACTGCATACATATATTC 60.183 42.308 8.85 0.00 44.63 1.75
1770 1871 5.639506 GCCAGTCGAACTGCATACATATATT 59.360 40.000 8.85 0.00 44.63 1.28
1771 1872 5.047021 AGCCAGTCGAACTGCATACATATAT 60.047 40.000 8.85 0.00 44.63 0.86
1772 1873 4.280929 AGCCAGTCGAACTGCATACATATA 59.719 41.667 8.85 0.00 44.63 0.86
1773 1874 3.070159 AGCCAGTCGAACTGCATACATAT 59.930 43.478 8.85 0.00 44.63 1.78
1774 1875 2.430694 AGCCAGTCGAACTGCATACATA 59.569 45.455 8.85 0.00 44.63 2.29
1775 1876 1.208052 AGCCAGTCGAACTGCATACAT 59.792 47.619 8.85 0.00 44.63 2.29
1784 1885 1.000506 TGAAGTGGTAGCCAGTCGAAC 59.999 52.381 0.00 0.00 35.94 3.95
1792 1893 2.933056 GCTGAGTTCTGAAGTGGTAGCC 60.933 54.545 1.76 0.00 0.00 3.93
1795 1896 3.641436 TGAAGCTGAGTTCTGAAGTGGTA 59.359 43.478 1.76 0.00 0.00 3.25
1805 1906 4.692625 TGTTCTATGCTTGAAGCTGAGTTC 59.307 41.667 18.94 11.89 42.97 3.01
1838 1939 5.231779 GCATGCATATGAGCTAGAAGATACG 59.768 44.000 14.21 0.00 36.36 3.06
1839 1940 6.256104 CAGCATGCATATGAGCTAGAAGATAC 59.744 42.308 21.98 0.00 36.36 2.24
1844 1946 4.612264 TCAGCATGCATATGAGCTAGAA 57.388 40.909 21.98 0.00 36.36 2.10
1846 1948 7.065923 ACAATTATCAGCATGCATATGAGCTAG 59.934 37.037 21.98 7.99 36.36 3.42
1857 1959 5.519927 GGTTAACCAACAATTATCAGCATGC 59.480 40.000 20.12 10.51 36.29 4.06
1875 1977 4.436986 GCCAGCGTTCTAGAAATGGTTAAC 60.437 45.833 23.50 0.00 0.00 2.01
1903 2005 2.499197 TGCAAGCCGTGATAAACAAGA 58.501 42.857 0.00 0.00 0.00 3.02
1918 2020 3.736759 CACATCTCAGATCTCGATGCAAG 59.263 47.826 22.51 13.70 38.42 4.01
1961 2063 5.073144 TCCTGTCAAACTTCCCAGAACTTAT 59.927 40.000 0.00 0.00 0.00 1.73
2213 2315 6.360370 TCTGAATTGGTAGCTAGTTGAACT 57.640 37.500 2.37 2.37 0.00 3.01
2435 4310 2.027745 GCCACTGGAGTCTTGATTCTCA 60.028 50.000 0.00 0.00 32.93 3.27
2436 4311 2.626840 GCCACTGGAGTCTTGATTCTC 58.373 52.381 0.00 0.00 0.00 2.87
2437 4312 1.066573 CGCCACTGGAGTCTTGATTCT 60.067 52.381 0.00 0.00 0.00 2.40
2438 4313 1.338200 ACGCCACTGGAGTCTTGATTC 60.338 52.381 0.00 0.00 26.99 2.52
2439 4314 0.687354 ACGCCACTGGAGTCTTGATT 59.313 50.000 0.00 0.00 26.99 2.57
2440 4315 0.247736 GACGCCACTGGAGTCTTGAT 59.752 55.000 21.29 0.00 46.43 2.57
2716 4591 1.258445 GCAGGAGAAGAAGACGGGGA 61.258 60.000 0.00 0.00 0.00 4.81
2719 4594 0.390472 GTGGCAGGAGAAGAAGACGG 60.390 60.000 0.00 0.00 0.00 4.79
2736 4611 0.610174 TAAGGACAGAGGCAGCAGTG 59.390 55.000 0.00 0.00 0.00 3.66
2737 4612 0.610687 GTAAGGACAGAGGCAGCAGT 59.389 55.000 0.00 0.00 0.00 4.40
2840 4763 1.324736 GCTTTACTTCACGCTCATCGG 59.675 52.381 0.00 0.00 43.86 4.18
2843 4766 2.472695 TGGCTTTACTTCACGCTCAT 57.527 45.000 0.00 0.00 0.00 2.90
2856 4779 1.181098 AAGCAGCGACCATTGGCTTT 61.181 50.000 1.54 0.00 41.67 3.51
2940 4863 1.610379 GGCAGGGACCATTGGCTTT 60.610 57.895 12.74 0.00 36.96 3.51
2981 4904 2.031012 CAGCGACCACTGGCTTCA 59.969 61.111 0.00 0.00 37.41 3.02
2982 4905 3.426568 GCAGCGACCACTGGCTTC 61.427 66.667 0.00 0.00 37.41 3.86
2983 4906 3.482232 AAGCAGCGACCACTGGCTT 62.482 57.895 0.00 0.00 37.41 4.35
2984 4907 3.890936 GAAGCAGCGACCACTGGCT 62.891 63.158 0.00 0.00 40.90 4.75
2985 4908 3.426568 GAAGCAGCGACCACTGGC 61.427 66.667 0.00 0.00 38.16 4.85
2986 4909 2.031516 CAGAAGCAGCGACCACTGG 61.032 63.158 0.00 0.00 38.16 4.00
2987 4910 1.287730 GACAGAAGCAGCGACCACTG 61.288 60.000 0.00 0.00 40.80 3.66
2988 4911 1.005630 GACAGAAGCAGCGACCACT 60.006 57.895 0.00 0.00 0.00 4.00
2989 4912 0.601311 AAGACAGAAGCAGCGACCAC 60.601 55.000 0.00 0.00 0.00 4.16
2990 4913 0.319900 GAAGACAGAAGCAGCGACCA 60.320 55.000 0.00 0.00 0.00 4.02
2991 4914 1.347817 CGAAGACAGAAGCAGCGACC 61.348 60.000 0.00 0.00 0.00 4.79
2992 4915 1.347817 CCGAAGACAGAAGCAGCGAC 61.348 60.000 0.00 0.00 0.00 5.19
2993 4916 1.080501 CCGAAGACAGAAGCAGCGA 60.081 57.895 0.00 0.00 0.00 4.93
2994 4917 1.373497 ACCGAAGACAGAAGCAGCG 60.373 57.895 0.00 0.00 0.00 5.18
2995 4918 0.319900 TCACCGAAGACAGAAGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
2996 4919 1.795286 GTTCACCGAAGACAGAAGCAG 59.205 52.381 0.00 0.00 0.00 4.24
2997 4920 1.865865 GTTCACCGAAGACAGAAGCA 58.134 50.000 0.00 0.00 0.00 3.91
2998 4921 0.784778 CGTTCACCGAAGACAGAAGC 59.215 55.000 0.00 0.00 39.56 3.86
2999 4922 0.784778 GCGTTCACCGAAGACAGAAG 59.215 55.000 0.00 0.00 39.56 2.85
3000 4923 0.937699 CGCGTTCACCGAAGACAGAA 60.938 55.000 0.00 0.00 39.56 3.02
3001 4924 1.371267 CGCGTTCACCGAAGACAGA 60.371 57.895 0.00 0.00 39.56 3.41
3002 4925 0.937699 TTCGCGTTCACCGAAGACAG 60.938 55.000 5.77 0.00 39.50 3.51
3003 4926 1.066093 TTCGCGTTCACCGAAGACA 59.934 52.632 5.77 0.00 39.50 3.41
3004 4927 3.926497 TTCGCGTTCACCGAAGAC 58.074 55.556 5.77 0.00 39.50 3.01
3007 4930 0.528033 TTCACTTCGCGTTCACCGAA 60.528 50.000 5.77 0.03 41.81 4.30
3008 4931 0.937699 CTTCACTTCGCGTTCACCGA 60.938 55.000 5.77 0.00 39.56 4.69
3009 4932 1.487231 CTTCACTTCGCGTTCACCG 59.513 57.895 5.77 0.00 40.40 4.94
3010 4933 1.204312 GCTTCACTTCGCGTTCACC 59.796 57.895 5.77 0.00 0.00 4.02
3011 4934 1.204312 GGCTTCACTTCGCGTTCAC 59.796 57.895 5.77 0.00 0.00 3.18
3012 4935 0.812014 TTGGCTTCACTTCGCGTTCA 60.812 50.000 5.77 0.00 0.00 3.18
3013 4936 0.517316 ATTGGCTTCACTTCGCGTTC 59.483 50.000 5.77 0.00 0.00 3.95
3014 4937 2.629002 ATTGGCTTCACTTCGCGTT 58.371 47.368 5.77 0.00 0.00 4.84
3015 4938 4.379174 ATTGGCTTCACTTCGCGT 57.621 50.000 5.77 0.00 0.00 6.01
3233 5156 1.548357 AAGACAGAGGCAGCGACCAT 61.548 55.000 0.69 0.00 0.00 3.55
3234 5157 2.159819 GAAGACAGAGGCAGCGACCA 62.160 60.000 0.69 0.00 0.00 4.02
3235 5158 1.446966 GAAGACAGAGGCAGCGACC 60.447 63.158 0.00 0.00 0.00 4.79
3236 5159 1.446966 GGAAGACAGAGGCAGCGAC 60.447 63.158 0.00 0.00 0.00 5.19
3237 5160 1.260538 ATGGAAGACAGAGGCAGCGA 61.261 55.000 0.00 0.00 0.00 4.93
3238 5161 1.088340 CATGGAAGACAGAGGCAGCG 61.088 60.000 0.00 0.00 0.00 5.18
3239 5162 0.251354 TCATGGAAGACAGAGGCAGC 59.749 55.000 0.00 0.00 0.00 5.25
3240 5163 1.743091 GCTCATGGAAGACAGAGGCAG 60.743 57.143 0.00 0.00 0.00 4.85
3241 5164 0.251354 GCTCATGGAAGACAGAGGCA 59.749 55.000 0.00 0.00 0.00 4.75
3242 5165 0.809241 CGCTCATGGAAGACAGAGGC 60.809 60.000 0.00 0.00 0.00 4.70
3243 5166 0.534412 ACGCTCATGGAAGACAGAGG 59.466 55.000 0.00 0.00 0.00 3.69
3244 5167 1.203287 TCACGCTCATGGAAGACAGAG 59.797 52.381 0.00 0.00 0.00 3.35
3245 5168 1.256812 TCACGCTCATGGAAGACAGA 58.743 50.000 0.00 0.00 0.00 3.41
3246 5169 1.998315 CTTCACGCTCATGGAAGACAG 59.002 52.381 3.35 0.00 40.28 3.51
3247 5170 1.344438 ACTTCACGCTCATGGAAGACA 59.656 47.619 13.52 0.00 40.28 3.41
3248 5171 1.728971 CACTTCACGCTCATGGAAGAC 59.271 52.381 13.52 0.00 40.28 3.01
3249 5172 1.618343 TCACTTCACGCTCATGGAAGA 59.382 47.619 13.52 0.00 40.28 2.87
3250 5173 2.084610 TCACTTCACGCTCATGGAAG 57.915 50.000 7.00 7.00 42.79 3.46
3251 5174 2.416747 CTTCACTTCACGCTCATGGAA 58.583 47.619 0.00 0.00 0.00 3.53
3252 5175 1.941209 GCTTCACTTCACGCTCATGGA 60.941 52.381 0.00 0.00 0.00 3.41
3253 5176 0.445436 GCTTCACTTCACGCTCATGG 59.555 55.000 0.00 0.00 0.00 3.66
3254 5177 0.445436 GGCTTCACTTCACGCTCATG 59.555 55.000 0.00 0.00 0.00 3.07
3255 5178 0.035317 TGGCTTCACTTCACGCTCAT 59.965 50.000 0.00 0.00 0.00 2.90
3256 5179 0.179059 TTGGCTTCACTTCACGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
3257 5180 1.135859 CATTGGCTTCACTTCACGCTC 60.136 52.381 0.00 0.00 0.00 5.03
3258 5181 0.877071 CATTGGCTTCACTTCACGCT 59.123 50.000 0.00 0.00 0.00 5.07
3259 5182 0.109597 CCATTGGCTTCACTTCACGC 60.110 55.000 0.00 0.00 0.00 5.34
3260 5183 1.197721 GACCATTGGCTTCACTTCACG 59.802 52.381 1.54 0.00 0.00 4.35
3261 5184 1.541588 GGACCATTGGCTTCACTTCAC 59.458 52.381 1.54 0.00 0.00 3.18
3262 5185 1.547675 GGGACCATTGGCTTCACTTCA 60.548 52.381 1.54 0.00 0.00 3.02
3263 5186 1.177401 GGGACCATTGGCTTCACTTC 58.823 55.000 1.54 0.00 0.00 3.01
3264 5187 0.779997 AGGGACCATTGGCTTCACTT 59.220 50.000 1.54 0.00 0.00 3.16
3265 5188 0.038744 CAGGGACCATTGGCTTCACT 59.961 55.000 1.54 0.00 0.00 3.41
3266 5189 1.598701 GCAGGGACCATTGGCTTCAC 61.599 60.000 1.54 0.00 0.00 3.18
3281 5204 1.079543 CACCGAAGACAGAGGCAGG 60.080 63.158 0.00 0.00 0.00 4.85
3307 5230 2.045926 GCGACCATTGGCCTCACT 60.046 61.111 3.32 0.00 0.00 3.41
3308 5231 2.045926 AGCGACCATTGGCCTCAC 60.046 61.111 3.32 0.00 0.00 3.51
3309 5232 2.046023 CAGCGACCATTGGCCTCA 60.046 61.111 3.32 0.00 0.00 3.86
3310 5233 3.512516 GCAGCGACCATTGGCCTC 61.513 66.667 3.32 0.00 0.00 4.70
3313 5236 3.512516 GAGGCAGCGACCATTGGC 61.513 66.667 1.54 0.00 39.90 4.52
3314 5237 2.110967 CAGAGGCAGCGACCATTGG 61.111 63.158 0.00 0.00 0.00 3.16
3315 5238 1.364626 GACAGAGGCAGCGACCATTG 61.365 60.000 0.69 1.43 0.00 2.82
3316 5239 1.078848 GACAGAGGCAGCGACCATT 60.079 57.895 0.69 0.00 0.00 3.16
3317 5240 1.954362 GAGACAGAGGCAGCGACCAT 61.954 60.000 0.69 0.00 0.00 3.55
3318 5241 2.601666 AGACAGAGGCAGCGACCA 60.602 61.111 0.69 0.00 0.00 4.02
3319 5242 2.183046 GAGACAGAGGCAGCGACC 59.817 66.667 0.00 0.00 0.00 4.79
3320 5243 2.183046 GGAGACAGAGGCAGCGAC 59.817 66.667 0.00 0.00 0.00 5.19
3321 5244 3.443925 CGGAGACAGAGGCAGCGA 61.444 66.667 0.00 0.00 0.00 4.93
3322 5245 4.504916 CCGGAGACAGAGGCAGCG 62.505 72.222 0.00 0.00 0.00 5.18
3323 5246 3.386237 ACCGGAGACAGAGGCAGC 61.386 66.667 9.46 0.00 0.00 5.25
3324 5247 1.943116 CTCACCGGAGACAGAGGCAG 61.943 65.000 9.46 0.00 44.26 4.85
3325 5248 1.979155 CTCACCGGAGACAGAGGCA 60.979 63.158 9.46 0.00 44.26 4.75
3326 5249 2.888863 CTCACCGGAGACAGAGGC 59.111 66.667 9.46 0.00 44.26 4.70
3327 5250 2.888863 GCTCACCGGAGACAGAGG 59.111 66.667 9.46 0.00 44.26 3.69
3328 5251 2.336478 ACGCTCACCGGAGACAGAG 61.336 63.158 9.46 8.31 44.26 3.35
3329 5252 2.282251 ACGCTCACCGGAGACAGA 60.282 61.111 9.46 0.00 44.26 3.41
3330 5253 2.126307 CACGCTCACCGGAGACAG 60.126 66.667 9.46 2.51 44.26 3.51
3331 5254 2.142357 CTTCACGCTCACCGGAGACA 62.142 60.000 9.46 0.00 44.26 3.41
3332 5255 1.444553 CTTCACGCTCACCGGAGAC 60.445 63.158 9.46 0.00 44.26 3.36
3333 5256 0.607217 TACTTCACGCTCACCGGAGA 60.607 55.000 9.46 4.36 44.26 3.71
3334 5257 0.242825 TTACTTCACGCTCACCGGAG 59.757 55.000 9.46 0.00 44.33 4.63
3335 5258 0.675083 TTTACTTCACGCTCACCGGA 59.325 50.000 9.46 0.00 42.52 5.14
3336 5259 1.068474 CTTTACTTCACGCTCACCGG 58.932 55.000 0.00 0.00 42.52 5.28
3337 5260 0.438830 GCTTTACTTCACGCTCACCG 59.561 55.000 0.00 0.00 44.21 4.94
3338 5261 0.796927 GGCTTTACTTCACGCTCACC 59.203 55.000 0.00 0.00 0.00 4.02
3339 5262 1.508632 TGGCTTTACTTCACGCTCAC 58.491 50.000 0.00 0.00 0.00 3.51
3340 5263 2.248280 TTGGCTTTACTTCACGCTCA 57.752 45.000 0.00 0.00 0.00 4.26
3341 5264 2.159517 CCATTGGCTTTACTTCACGCTC 60.160 50.000 0.00 0.00 0.00 5.03
3342 5265 1.812571 CCATTGGCTTTACTTCACGCT 59.187 47.619 0.00 0.00 0.00 5.07
3343 5266 1.539827 ACCATTGGCTTTACTTCACGC 59.460 47.619 1.54 0.00 0.00 5.34
3344 5267 3.564511 CAACCATTGGCTTTACTTCACG 58.435 45.455 1.54 0.00 0.00 4.35
3345 5268 3.005791 AGCAACCATTGGCTTTACTTCAC 59.994 43.478 1.54 0.00 36.92 3.18
3346 5269 3.005684 CAGCAACCATTGGCTTTACTTCA 59.994 43.478 1.54 0.00 38.56 3.02
3347 5270 3.578688 CAGCAACCATTGGCTTTACTTC 58.421 45.455 1.54 0.00 38.56 3.01
3348 5271 2.289010 GCAGCAACCATTGGCTTTACTT 60.289 45.455 1.54 0.00 38.56 2.24
3352 5275 1.123246 AGGCAGCAACCATTGGCTTT 61.123 50.000 1.54 0.00 46.63 3.51
3364 5287 0.535780 CACCAAAGACAGAGGCAGCA 60.536 55.000 0.00 0.00 0.00 4.41
3470 9378 0.463295 CAATGCTGAGCGATCCAGGT 60.463 55.000 0.00 0.00 32.51 4.00
3472 9380 1.164662 CCCAATGCTGAGCGATCCAG 61.165 60.000 0.00 0.00 34.88 3.86
3597 9505 6.534634 ACCTGGTAATCTTTACCATAGATGC 58.465 40.000 17.10 0.00 45.53 3.91
3711 9620 1.139058 CCAGCATAACGAAGCTACCCT 59.861 52.381 0.00 0.00 39.50 4.34
3741 9650 7.308450 TGTAATATGCTCAGCTAAAGGATCT 57.692 36.000 0.00 0.00 0.00 2.75
3802 9714 3.544048 CCAAACATAACGCTATGCAGACG 60.544 47.826 5.74 4.46 38.87 4.18
3890 9802 2.700371 ACATAGATTCTGACGCCCATCA 59.300 45.455 0.00 0.00 0.00 3.07
3935 9847 5.524284 ACTAGCAACGAACTATAGCATCAG 58.476 41.667 0.00 0.00 0.00 2.90
3936 9848 5.515797 ACTAGCAACGAACTATAGCATCA 57.484 39.130 0.00 0.00 0.00 3.07
4022 9935 5.867174 CCATATAAGAACGTTGACAGTGTCA 59.133 40.000 22.06 22.06 41.09 3.58
4023 9936 5.291128 CCCATATAAGAACGTTGACAGTGTC 59.709 44.000 16.68 16.68 0.00 3.67
4024 9937 5.046878 TCCCATATAAGAACGTTGACAGTGT 60.047 40.000 5.00 0.00 0.00 3.55
4025 9938 5.416083 TCCCATATAAGAACGTTGACAGTG 58.584 41.667 5.00 0.00 0.00 3.66
4026 9939 5.670792 TCCCATATAAGAACGTTGACAGT 57.329 39.130 5.00 0.00 0.00 3.55
4027 9940 5.466728 CCATCCCATATAAGAACGTTGACAG 59.533 44.000 5.00 0.00 0.00 3.51
4028 9941 5.129650 TCCATCCCATATAAGAACGTTGACA 59.870 40.000 5.00 0.00 0.00 3.58
4029 9942 5.607477 TCCATCCCATATAAGAACGTTGAC 58.393 41.667 5.00 0.00 0.00 3.18
4030 9943 5.365605 ACTCCATCCCATATAAGAACGTTGA 59.634 40.000 5.00 0.00 0.00 3.18
4031 9944 5.466728 CACTCCATCCCATATAAGAACGTTG 59.533 44.000 5.00 0.00 0.00 4.10
4032 9945 5.130477 ACACTCCATCCCATATAAGAACGTT 59.870 40.000 0.00 0.00 0.00 3.99
4033 9946 4.654262 ACACTCCATCCCATATAAGAACGT 59.346 41.667 0.00 0.00 0.00 3.99
4034 9947 5.215252 ACACTCCATCCCATATAAGAACG 57.785 43.478 0.00 0.00 0.00 3.95
4035 9948 6.174720 TGACACTCCATCCCATATAAGAAC 57.825 41.667 0.00 0.00 0.00 3.01
4036 9949 6.823286 TTGACACTCCATCCCATATAAGAA 57.177 37.500 0.00 0.00 0.00 2.52
4037 9950 6.823286 TTTGACACTCCATCCCATATAAGA 57.177 37.500 0.00 0.00 0.00 2.10
4038 9951 7.467267 CGTTTTTGACACTCCATCCCATATAAG 60.467 40.741 0.00 0.00 0.00 1.73
4039 9952 6.317642 CGTTTTTGACACTCCATCCCATATAA 59.682 38.462 0.00 0.00 0.00 0.98
4040 9953 5.820423 CGTTTTTGACACTCCATCCCATATA 59.180 40.000 0.00 0.00 0.00 0.86
4041 9954 4.640201 CGTTTTTGACACTCCATCCCATAT 59.360 41.667 0.00 0.00 0.00 1.78
4042 9955 4.006989 CGTTTTTGACACTCCATCCCATA 58.993 43.478 0.00 0.00 0.00 2.74
4043 9956 2.819608 CGTTTTTGACACTCCATCCCAT 59.180 45.455 0.00 0.00 0.00 4.00
4044 9957 2.226330 CGTTTTTGACACTCCATCCCA 58.774 47.619 0.00 0.00 0.00 4.37
4045 9958 2.227194 ACGTTTTTGACACTCCATCCC 58.773 47.619 0.00 0.00 0.00 3.85
4046 9959 4.454504 ACATACGTTTTTGACACTCCATCC 59.545 41.667 0.00 0.00 0.00 3.51
4047 9960 5.607119 ACATACGTTTTTGACACTCCATC 57.393 39.130 0.00 0.00 0.00 3.51
4048 9961 7.361713 CCATAACATACGTTTTTGACACTCCAT 60.362 37.037 0.00 0.00 36.52 3.41
4049 9962 6.072948 CCATAACATACGTTTTTGACACTCCA 60.073 38.462 0.00 0.00 36.52 3.86
4050 9963 6.311723 CCATAACATACGTTTTTGACACTCC 58.688 40.000 0.00 0.00 36.52 3.85
4051 9964 6.148150 TCCCATAACATACGTTTTTGACACTC 59.852 38.462 0.00 0.00 36.52 3.51
4052 9965 5.998981 TCCCATAACATACGTTTTTGACACT 59.001 36.000 0.00 0.00 36.52 3.55
4053 9966 6.081693 GTCCCATAACATACGTTTTTGACAC 58.918 40.000 0.00 0.00 36.52 3.67
4054 9967 5.181622 GGTCCCATAACATACGTTTTTGACA 59.818 40.000 0.00 0.00 36.52 3.58
4055 9968 5.633927 GGTCCCATAACATACGTTTTTGAC 58.366 41.667 0.00 0.00 36.52 3.18
4056 9969 4.392445 CGGTCCCATAACATACGTTTTTGA 59.608 41.667 0.00 0.00 36.52 2.69
4057 9970 4.437659 CCGGTCCCATAACATACGTTTTTG 60.438 45.833 0.00 0.00 36.52 2.44
4058 9971 3.690628 CCGGTCCCATAACATACGTTTTT 59.309 43.478 0.00 0.00 36.52 1.94
4059 9972 3.272581 CCGGTCCCATAACATACGTTTT 58.727 45.455 0.00 0.00 36.52 2.43
4060 9973 2.420408 CCCGGTCCCATAACATACGTTT 60.420 50.000 0.00 0.00 36.52 3.60
4061 9974 1.139455 CCCGGTCCCATAACATACGTT 59.861 52.381 0.00 0.00 39.24 3.99
4062 9975 0.754472 CCCGGTCCCATAACATACGT 59.246 55.000 0.00 0.00 0.00 3.57
4063 9976 0.034337 CCCCGGTCCCATAACATACG 59.966 60.000 0.00 0.00 0.00 3.06
4064 9977 0.399075 CCCCCGGTCCCATAACATAC 59.601 60.000 0.00 0.00 0.00 2.39
4065 9978 0.268263 TCCCCCGGTCCCATAACATA 59.732 55.000 0.00 0.00 0.00 2.29
4066 9979 1.005023 TCCCCCGGTCCCATAACAT 59.995 57.895 0.00 0.00 0.00 2.71
4067 9980 1.691337 CTCCCCCGGTCCCATAACA 60.691 63.158 0.00 0.00 0.00 2.41
4068 9981 0.398948 TACTCCCCCGGTCCCATAAC 60.399 60.000 0.00 0.00 0.00 1.89
4069 9982 0.569204 ATACTCCCCCGGTCCCATAA 59.431 55.000 0.00 0.00 0.00 1.90
4070 9983 1.470197 TATACTCCCCCGGTCCCATA 58.530 55.000 0.00 0.00 0.00 2.74
4071 9984 0.797579 ATATACTCCCCCGGTCCCAT 59.202 55.000 0.00 0.00 0.00 4.00
4072 9985 0.178915 CATATACTCCCCCGGTCCCA 60.179 60.000 0.00 0.00 0.00 4.37
4073 9986 0.178912 ACATATACTCCCCCGGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
4074 9987 1.725803 AACATATACTCCCCCGGTCC 58.274 55.000 0.00 0.00 0.00 4.46
4075 9988 3.233507 TGTAACATATACTCCCCCGGTC 58.766 50.000 0.00 0.00 0.00 4.79
4076 9989 3.333313 TGTAACATATACTCCCCCGGT 57.667 47.619 0.00 0.00 0.00 5.28
4077 9990 3.581332 ACATGTAACATATACTCCCCCGG 59.419 47.826 0.00 0.00 0.00 5.73
4078 9991 4.039973 ACACATGTAACATATACTCCCCCG 59.960 45.833 0.00 0.00 0.00 5.73
4079 9992 5.562298 ACACATGTAACATATACTCCCCC 57.438 43.478 0.00 0.00 0.00 5.40
4080 9993 8.208903 AGTAAACACATGTAACATATACTCCCC 58.791 37.037 0.00 0.00 0.00 4.81
4081 9994 9.609346 AAGTAAACACATGTAACATATACTCCC 57.391 33.333 0.00 0.00 0.00 4.30
4149 10062 7.149202 AGATATGGGGAAATACTTGCTTGTA 57.851 36.000 0.00 0.00 0.00 2.41
4159 10072 5.015072 TGCATGGCTTAGATATGGGGAAATA 59.985 40.000 0.00 0.00 0.00 1.40
4174 10132 1.228644 TCACTTGGCTGCATGGCTT 60.229 52.632 0.50 0.00 42.34 4.35
4175 10133 1.677966 CTCACTTGGCTGCATGGCT 60.678 57.895 0.50 0.00 42.34 4.75
4182 10140 0.321122 GGTCCTCACTCACTTGGCTG 60.321 60.000 0.00 0.00 0.00 4.85
4248 10210 4.397103 ACATGCAGATCAAGTTGTGGTATG 59.603 41.667 2.11 8.52 32.37 2.39
4253 10215 3.501062 ACTCACATGCAGATCAAGTTGTG 59.499 43.478 2.11 6.49 36.64 3.33
4271 10233 6.052360 TGCAACTTGTATGAAACTACACTCA 58.948 36.000 0.00 0.00 31.51 3.41
4312 10274 0.825010 CTCCAGCCCACAAGTTTGCT 60.825 55.000 0.00 0.00 33.52 3.91
4330 10292 2.799371 GCACGCCGTAGCTCTACT 59.201 61.111 0.00 0.00 36.60 2.57
4340 10302 2.706123 GCATGAAAAACGCACGCCG 61.706 57.895 0.00 0.00 44.21 6.46
4409 10371 2.107141 CCCGAGAGAACCCGATGC 59.893 66.667 0.00 0.00 0.00 3.91
4430 10412 4.472833 ACAGCATTACCTCCATCTTCTTCT 59.527 41.667 0.00 0.00 0.00 2.85
4446 10428 6.207221 TGTGTCATGTTAATCTCAACAGCATT 59.793 34.615 0.00 0.00 41.48 3.56
4450 10432 7.425577 TCTTGTGTCATGTTAATCTCAACAG 57.574 36.000 0.00 0.00 41.48 3.16
4460 10442 3.752747 CAGGTGCATCTTGTGTCATGTTA 59.247 43.478 0.00 0.00 0.00 2.41
4527 10520 7.898918 TCCACAAATTCTCATCATTTCAACAT 58.101 30.769 0.00 0.00 0.00 2.71
4565 10559 5.201713 TCACAGCATTACATAGGACTAGC 57.798 43.478 0.00 0.00 0.00 3.42
4577 10571 6.155827 GCACCTAAACAAATTCACAGCATTA 58.844 36.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.