Multiple sequence alignment - TraesCS1B01G306200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G306200 chr1B 100.000 2662 0 0 1 2662 529511158 529513819 0.000000e+00 4916.0
1 TraesCS1B01G306200 chr2B 94.572 1087 31 7 589 1649 300266555 300265471 0.000000e+00 1655.0
2 TraesCS1B01G306200 chr2B 94.669 544 29 0 2058 2601 676573032 676572489 0.000000e+00 845.0
3 TraesCS1B01G306200 chr1D 94.231 1092 34 9 586 1649 445381901 445380811 0.000000e+00 1640.0
4 TraesCS1B01G306200 chr1D 93.233 665 45 0 1937 2601 445369486 445368822 0.000000e+00 979.0
5 TraesCS1B01G306200 chr1D 94.444 324 18 0 265 588 393400734 393400411 1.420000e-137 499.0
6 TraesCS1B01G306200 chr1D 92.920 113 4 3 1 109 393433710 393433598 7.630000e-36 161.0
7 TraesCS1B01G306200 chr1D 81.871 171 25 6 416 583 471937702 471937535 3.570000e-29 139.0
8 TraesCS1B01G306200 chr1D 96.923 65 2 0 2598 2662 445368412 445368348 2.800000e-20 110.0
9 TraesCS1B01G306200 chr5B 94.296 1087 35 9 589 1649 708970873 708969788 0.000000e+00 1639.0
10 TraesCS1B01G306200 chr5B 93.287 581 39 0 2021 2601 708967291 708966711 0.000000e+00 857.0
11 TraesCS1B01G306200 chr5B 93.202 456 31 0 1645 2100 708967547 708967092 0.000000e+00 671.0
12 TraesCS1B01G306200 chr5D 94.020 1087 38 9 589 1649 475817964 475819049 0.000000e+00 1622.0
13 TraesCS1B01G306200 chr5D 93.478 690 45 0 1912 2601 475821720 475822409 0.000000e+00 1026.0
14 TraesCS1B01G306200 chr5D 91.887 567 40 1 1645 2211 475821419 475821979 0.000000e+00 787.0
15 TraesCS1B01G306200 chr5D 98.462 65 1 0 2598 2662 408255537 408255601 6.020000e-22 115.0
16 TraesCS1B01G306200 chr5D 96.923 65 2 0 2598 2662 475822819 475822883 2.800000e-20 110.0
17 TraesCS1B01G306200 chr6A 93.842 1088 39 9 589 1649 215009764 215010850 0.000000e+00 1613.0
18 TraesCS1B01G306200 chr6A 92.943 581 41 0 2015 2595 215013459 215014039 0.000000e+00 846.0
19 TraesCS1B01G306200 chr6A 95.885 486 20 0 589 1074 6332836 6332351 0.000000e+00 787.0
20 TraesCS1B01G306200 chr6A 93.289 447 30 0 1645 2091 215013209 215013655 0.000000e+00 660.0
21 TraesCS1B01G306200 chr6A 98.387 62 1 0 2598 2659 6331112 6331051 2.800000e-20 110.0
22 TraesCS1B01G306200 chr7A 93.664 1089 41 9 589 1649 151358719 151357631 0.000000e+00 1604.0
23 TraesCS1B01G306200 chr7B 93.578 1090 41 9 589 1649 474548367 474547278 0.000000e+00 1598.0
24 TraesCS1B01G306200 chr7B 92.982 456 32 0 1645 2100 474544975 474544520 0.000000e+00 665.0
25 TraesCS1B01G306200 chr3D 95.298 957 42 1 1645 2601 14410164 14411117 0.000000e+00 1515.0
26 TraesCS1B01G306200 chr3D 95.385 65 3 0 2598 2662 14411529 14411593 1.300000e-18 104.0
27 TraesCS1B01G306200 chr4B 93.320 1033 41 9 645 1649 442429675 442428643 0.000000e+00 1500.0
28 TraesCS1B01G306200 chr2A 92.872 954 68 0 1648 2601 70037814 70036861 0.000000e+00 1386.0
29 TraesCS1B01G306200 chr2A 93.015 587 41 0 2015 2601 689610455 689611041 0.000000e+00 857.0
30 TraesCS1B01G306200 chr2A 93.512 447 29 0 1645 2091 689610205 689610651 0.000000e+00 665.0
31 TraesCS1B01G306200 chr2A 98.333 60 1 0 2598 2657 70036451 70036392 3.620000e-19 106.0
32 TraesCS1B01G306200 chr6D 93.892 835 25 8 841 1649 289734835 289734001 0.000000e+00 1236.0
33 TraesCS1B01G306200 chr6D 93.322 584 39 0 2018 2601 289731389 289730806 0.000000e+00 863.0
34 TraesCS1B01G306200 chr6D 93.860 456 28 0 1645 2100 289731642 289731187 0.000000e+00 688.0
35 TraesCS1B01G306200 chr6D 96.923 65 2 0 2598 2662 289730396 289730332 2.800000e-20 110.0
36 TraesCS1B01G306200 chr3B 95.679 486 21 0 589 1074 60503784 60504269 0.000000e+00 782.0
37 TraesCS1B01G306200 chr3B 98.387 62 1 0 2598 2659 60507610 60507671 2.800000e-20 110.0
38 TraesCS1B01G306200 chr4A 95.062 486 21 2 589 1074 668452855 668452373 0.000000e+00 761.0
39 TraesCS1B01G306200 chr4A 92.373 472 32 2 1645 2115 20287540 20287072 0.000000e+00 669.0
40 TraesCS1B01G306200 chr4A 95.385 65 3 0 2598 2662 20270742 20270678 1.300000e-18 104.0
41 TraesCS1B01G306200 chr1A 87.960 299 27 3 297 588 492224696 492224992 7.060000e-91 344.0
42 TraesCS1B01G306200 chr1A 98.333 60 1 0 244 303 492215938 492215997 3.620000e-19 106.0
43 TraesCS1B01G306200 chr1A 94.545 55 1 1 55 109 492215844 492215896 1.700000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G306200 chr1B 529511158 529513819 2661 False 4916.000000 4916 100.00000 1 2662 1 chr1B.!!$F1 2661
1 TraesCS1B01G306200 chr2B 300265471 300266555 1084 True 1655.000000 1655 94.57200 589 1649 1 chr2B.!!$R1 1060
2 TraesCS1B01G306200 chr2B 676572489 676573032 543 True 845.000000 845 94.66900 2058 2601 1 chr2B.!!$R2 543
3 TraesCS1B01G306200 chr1D 445380811 445381901 1090 True 1640.000000 1640 94.23100 586 1649 1 chr1D.!!$R3 1063
4 TraesCS1B01G306200 chr1D 445368348 445369486 1138 True 544.500000 979 95.07800 1937 2662 2 chr1D.!!$R5 725
5 TraesCS1B01G306200 chr5B 708966711 708970873 4162 True 1055.666667 1639 93.59500 589 2601 3 chr5B.!!$R1 2012
6 TraesCS1B01G306200 chr5D 475817964 475822883 4919 False 886.250000 1622 94.07700 589 2662 4 chr5D.!!$F2 2073
7 TraesCS1B01G306200 chr6A 215009764 215014039 4275 False 1039.666667 1613 93.35800 589 2595 3 chr6A.!!$F1 2006
8 TraesCS1B01G306200 chr6A 6331051 6332836 1785 True 448.500000 787 97.13600 589 2659 2 chr6A.!!$R1 2070
9 TraesCS1B01G306200 chr7A 151357631 151358719 1088 True 1604.000000 1604 93.66400 589 1649 1 chr7A.!!$R1 1060
10 TraesCS1B01G306200 chr7B 474544520 474548367 3847 True 1131.500000 1598 93.28000 589 2100 2 chr7B.!!$R1 1511
11 TraesCS1B01G306200 chr3D 14410164 14411593 1429 False 809.500000 1515 95.34150 1645 2662 2 chr3D.!!$F1 1017
12 TraesCS1B01G306200 chr4B 442428643 442429675 1032 True 1500.000000 1500 93.32000 645 1649 1 chr4B.!!$R1 1004
13 TraesCS1B01G306200 chr2A 689610205 689611041 836 False 761.000000 857 93.26350 1645 2601 2 chr2A.!!$F1 956
14 TraesCS1B01G306200 chr2A 70036392 70037814 1422 True 746.000000 1386 95.60250 1648 2657 2 chr2A.!!$R1 1009
15 TraesCS1B01G306200 chr6D 289730332 289734835 4503 True 724.250000 1236 94.49925 841 2662 4 chr6D.!!$R1 1821
16 TraesCS1B01G306200 chr3B 60503784 60507671 3887 False 446.000000 782 97.03300 589 2659 2 chr3B.!!$F1 2070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.037975 AGGCGATTTGTAACGTCGGT 60.038 50.0 0.0 0.0 39.16 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 4479 0.188342 AGCCACAAGGTGAAATGGGT 59.812 50.0 0.0 0.0 38.11 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.324713 GTCCTACTGGGCTGGCAT 58.675 61.111 2.88 0.00 34.49 4.40
18 19 1.147153 GTCCTACTGGGCTGGCATC 59.853 63.158 2.88 0.00 34.49 3.91
19 20 2.072487 TCCTACTGGGCTGGCATCC 61.072 63.158 2.88 0.00 34.39 3.51
20 21 2.074948 CCTACTGGGCTGGCATCCT 61.075 63.158 7.39 0.00 0.00 3.24
21 22 1.147824 CTACTGGGCTGGCATCCTG 59.852 63.158 7.39 9.41 0.00 3.86
22 23 1.616327 TACTGGGCTGGCATCCTGT 60.616 57.895 18.29 18.29 38.47 4.00
23 24 0.326143 TACTGGGCTGGCATCCTGTA 60.326 55.000 16.82 16.82 36.73 2.74
24 25 1.147824 CTGGGCTGGCATCCTGTAG 59.852 63.158 7.39 0.41 0.00 2.74
25 26 2.335092 CTGGGCTGGCATCCTGTAGG 62.335 65.000 7.39 0.00 0.00 3.18
26 27 2.203266 GGCTGGCATCCTGTAGGC 60.203 66.667 0.00 0.00 34.44 3.93
27 28 2.590007 GCTGGCATCCTGTAGGCG 60.590 66.667 0.00 0.00 35.10 5.52
28 29 3.094062 GCTGGCATCCTGTAGGCGA 62.094 63.158 0.00 0.00 35.10 5.54
29 30 1.068753 CTGGCATCCTGTAGGCGAG 59.931 63.158 0.00 0.00 35.10 5.03
30 31 2.374830 CTGGCATCCTGTAGGCGAGG 62.375 65.000 0.00 0.00 37.11 4.63
31 32 2.134287 GGCATCCTGTAGGCGAGGA 61.134 63.158 5.57 5.57 43.92 3.71
33 34 1.257743 GCATCCTGTAGGCGAGGATA 58.742 55.000 13.35 0.00 46.80 2.59
34 35 1.203523 GCATCCTGTAGGCGAGGATAG 59.796 57.143 13.35 10.06 46.80 2.08
35 36 2.520069 CATCCTGTAGGCGAGGATAGT 58.480 52.381 13.35 0.00 46.80 2.12
36 37 3.687125 CATCCTGTAGGCGAGGATAGTA 58.313 50.000 13.35 0.00 46.80 1.82
37 38 3.420300 TCCTGTAGGCGAGGATAGTAG 57.580 52.381 0.00 0.00 34.49 2.57
38 39 2.709934 TCCTGTAGGCGAGGATAGTAGT 59.290 50.000 0.00 0.00 34.49 2.73
39 40 3.075884 CCTGTAGGCGAGGATAGTAGTC 58.924 54.545 0.00 0.00 31.48 2.59
40 41 3.244630 CCTGTAGGCGAGGATAGTAGTCT 60.245 52.174 0.00 0.00 31.48 3.24
41 42 3.741249 TGTAGGCGAGGATAGTAGTCTG 58.259 50.000 0.00 0.00 0.00 3.51
42 43 3.390311 TGTAGGCGAGGATAGTAGTCTGA 59.610 47.826 0.00 0.00 0.00 3.27
43 44 2.853705 AGGCGAGGATAGTAGTCTGAC 58.146 52.381 0.00 0.00 0.00 3.51
44 45 1.532007 GGCGAGGATAGTAGTCTGACG 59.468 57.143 1.52 0.00 0.00 4.35
45 46 1.532007 GCGAGGATAGTAGTCTGACGG 59.468 57.143 1.52 0.00 0.00 4.79
46 47 2.144730 CGAGGATAGTAGTCTGACGGG 58.855 57.143 1.52 0.00 0.00 5.28
47 48 1.881324 GAGGATAGTAGTCTGACGGGC 59.119 57.143 1.52 0.00 0.00 6.13
48 49 1.495574 AGGATAGTAGTCTGACGGGCT 59.504 52.381 1.52 0.00 0.00 5.19
49 50 2.709934 AGGATAGTAGTCTGACGGGCTA 59.290 50.000 1.52 6.79 0.00 3.93
50 51 3.075884 GGATAGTAGTCTGACGGGCTAG 58.924 54.545 1.52 0.00 32.21 3.42
51 52 3.244491 GGATAGTAGTCTGACGGGCTAGA 60.244 52.174 1.52 0.00 32.21 2.43
52 53 2.803030 AGTAGTCTGACGGGCTAGAA 57.197 50.000 1.52 0.00 32.21 2.10
53 54 3.300239 AGTAGTCTGACGGGCTAGAAT 57.700 47.619 1.52 0.00 32.21 2.40
54 55 4.434545 AGTAGTCTGACGGGCTAGAATA 57.565 45.455 1.52 0.00 32.21 1.75
55 56 4.391155 AGTAGTCTGACGGGCTAGAATAG 58.609 47.826 1.52 0.00 43.09 1.73
56 57 3.579534 AGTCTGACGGGCTAGAATAGA 57.420 47.619 1.52 0.00 42.77 1.98
57 58 3.482436 AGTCTGACGGGCTAGAATAGAG 58.518 50.000 1.52 0.00 42.77 2.43
58 59 2.030628 GTCTGACGGGCTAGAATAGAGC 60.031 54.545 0.00 0.00 42.77 4.09
59 60 1.957177 CTGACGGGCTAGAATAGAGCA 59.043 52.381 0.00 0.00 42.77 4.26
60 61 2.362397 CTGACGGGCTAGAATAGAGCAA 59.638 50.000 0.00 0.00 42.77 3.91
61 62 2.965831 TGACGGGCTAGAATAGAGCAAT 59.034 45.455 0.00 0.00 42.77 3.56
62 63 3.005897 TGACGGGCTAGAATAGAGCAATC 59.994 47.826 0.00 0.00 42.77 2.67
63 64 2.300437 ACGGGCTAGAATAGAGCAATCC 59.700 50.000 0.00 0.00 42.77 3.01
64 65 2.564947 CGGGCTAGAATAGAGCAATCCT 59.435 50.000 0.00 0.00 42.77 3.24
65 66 3.367910 CGGGCTAGAATAGAGCAATCCTC 60.368 52.174 0.00 0.00 42.77 3.71
66 67 3.367910 GGGCTAGAATAGAGCAATCCTCG 60.368 52.174 0.00 0.00 42.77 4.63
67 68 3.257127 GGCTAGAATAGAGCAATCCTCGT 59.743 47.826 0.00 0.00 42.77 4.18
68 69 4.262249 GGCTAGAATAGAGCAATCCTCGTT 60.262 45.833 0.00 0.00 42.77 3.85
69 70 4.683781 GCTAGAATAGAGCAATCCTCGTTG 59.316 45.833 0.00 0.00 42.77 4.10
70 71 4.065321 AGAATAGAGCAATCCTCGTTGG 57.935 45.455 0.00 0.00 45.54 3.77
71 72 2.918712 ATAGAGCAATCCTCGTTGGG 57.081 50.000 0.00 0.00 45.54 4.12
72 73 0.178068 TAGAGCAATCCTCGTTGGGC 59.822 55.000 0.00 0.00 45.54 5.36
73 74 1.078143 GAGCAATCCTCGTTGGGCT 60.078 57.895 0.00 0.00 34.30 5.19
74 75 1.372087 GAGCAATCCTCGTTGGGCTG 61.372 60.000 0.00 1.72 32.26 4.85
75 76 1.675641 GCAATCCTCGTTGGGCTGT 60.676 57.895 0.00 0.00 36.20 4.40
76 77 0.392461 GCAATCCTCGTTGGGCTGTA 60.392 55.000 0.00 0.00 36.20 2.74
77 78 1.948611 GCAATCCTCGTTGGGCTGTAA 60.949 52.381 0.00 0.00 36.20 2.41
78 79 2.009774 CAATCCTCGTTGGGCTGTAAG 58.990 52.381 0.00 0.00 36.20 2.34
98 99 4.236527 AGCCTGTATGGGTTTTTCTAGG 57.763 45.455 0.00 0.00 45.67 3.02
99 100 2.688446 GCCTGTATGGGTTTTTCTAGGC 59.312 50.000 0.00 0.00 42.12 3.93
100 101 3.624959 GCCTGTATGGGTTTTTCTAGGCT 60.625 47.826 0.00 0.00 44.51 4.58
101 102 3.947834 CCTGTATGGGTTTTTCTAGGCTG 59.052 47.826 0.00 0.00 0.00 4.85
102 103 3.947834 CTGTATGGGTTTTTCTAGGCTGG 59.052 47.826 0.00 0.00 0.00 4.85
103 104 1.852633 ATGGGTTTTTCTAGGCTGGC 58.147 50.000 0.00 0.00 0.00 4.85
104 105 0.777446 TGGGTTTTTCTAGGCTGGCT 59.223 50.000 9.28 9.28 0.00 4.75
105 106 1.146982 TGGGTTTTTCTAGGCTGGCTT 59.853 47.619 9.68 0.00 0.00 4.35
106 107 2.248248 GGGTTTTTCTAGGCTGGCTTT 58.752 47.619 9.68 0.00 0.00 3.51
107 108 2.632996 GGGTTTTTCTAGGCTGGCTTTT 59.367 45.455 9.68 0.00 0.00 2.27
108 109 3.071023 GGGTTTTTCTAGGCTGGCTTTTT 59.929 43.478 9.68 0.00 0.00 1.94
109 110 4.282449 GGGTTTTTCTAGGCTGGCTTTTTA 59.718 41.667 9.68 0.00 0.00 1.52
110 111 5.046591 GGGTTTTTCTAGGCTGGCTTTTTAT 60.047 40.000 9.68 0.00 0.00 1.40
111 112 6.153851 GGGTTTTTCTAGGCTGGCTTTTTATA 59.846 38.462 9.68 0.00 0.00 0.98
112 113 7.033791 GGTTTTTCTAGGCTGGCTTTTTATAC 58.966 38.462 9.68 2.18 0.00 1.47
113 114 7.309560 GGTTTTTCTAGGCTGGCTTTTTATACA 60.310 37.037 9.68 0.00 0.00 2.29
114 115 7.768807 TTTTCTAGGCTGGCTTTTTATACAA 57.231 32.000 9.68 0.00 0.00 2.41
115 116 7.391148 TTTCTAGGCTGGCTTTTTATACAAG 57.609 36.000 9.68 0.00 0.00 3.16
116 117 6.062258 TCTAGGCTGGCTTTTTATACAAGT 57.938 37.500 9.68 0.00 0.00 3.16
117 118 6.481643 TCTAGGCTGGCTTTTTATACAAGTT 58.518 36.000 9.68 0.00 0.00 2.66
118 119 6.946009 TCTAGGCTGGCTTTTTATACAAGTTT 59.054 34.615 9.68 0.00 0.00 2.66
119 120 6.419484 AGGCTGGCTTTTTATACAAGTTTT 57.581 33.333 0.00 0.00 0.00 2.43
120 121 6.826668 AGGCTGGCTTTTTATACAAGTTTTT 58.173 32.000 0.00 0.00 0.00 1.94
121 122 6.929049 AGGCTGGCTTTTTATACAAGTTTTTC 59.071 34.615 0.00 0.00 0.00 2.29
122 123 6.929049 GGCTGGCTTTTTATACAAGTTTTTCT 59.071 34.615 0.00 0.00 0.00 2.52
123 124 8.085909 GGCTGGCTTTTTATACAAGTTTTTCTA 58.914 33.333 0.00 0.00 0.00 2.10
124 125 9.129209 GCTGGCTTTTTATACAAGTTTTTCTAG 57.871 33.333 0.00 0.00 0.00 2.43
125 126 9.626045 CTGGCTTTTTATACAAGTTTTTCTAGG 57.374 33.333 0.00 0.00 0.00 3.02
126 127 8.085909 TGGCTTTTTATACAAGTTTTTCTAGGC 58.914 33.333 0.00 0.00 0.00 3.93
127 128 8.085909 GGCTTTTTATACAAGTTTTTCTAGGCA 58.914 33.333 0.00 0.00 0.00 4.75
128 129 9.471084 GCTTTTTATACAAGTTTTTCTAGGCAA 57.529 29.630 0.00 0.00 0.00 4.52
130 131 9.471084 TTTTTATACAAGTTTTTCTAGGCAAGC 57.529 29.630 0.00 0.00 0.00 4.01
131 132 7.996098 TTATACAAGTTTTTCTAGGCAAGCT 57.004 32.000 0.00 0.00 0.00 3.74
132 133 6.901081 ATACAAGTTTTTCTAGGCAAGCTT 57.099 33.333 0.00 0.00 0.00 3.74
133 134 7.996098 ATACAAGTTTTTCTAGGCAAGCTTA 57.004 32.000 0.00 0.00 0.00 3.09
134 135 6.901081 ACAAGTTTTTCTAGGCAAGCTTAT 57.099 33.333 0.00 0.00 0.00 1.73
135 136 7.996098 ACAAGTTTTTCTAGGCAAGCTTATA 57.004 32.000 0.00 0.00 0.00 0.98
136 137 8.581253 ACAAGTTTTTCTAGGCAAGCTTATAT 57.419 30.769 0.00 0.00 0.00 0.86
137 138 9.025041 ACAAGTTTTTCTAGGCAAGCTTATATT 57.975 29.630 0.00 0.00 0.00 1.28
145 146 9.856488 TTCTAGGCAAGCTTATATTATAAGACG 57.144 33.333 22.16 12.48 0.00 4.18
146 147 9.021807 TCTAGGCAAGCTTATATTATAAGACGT 57.978 33.333 22.16 11.66 0.00 4.34
147 148 9.640963 CTAGGCAAGCTTATATTATAAGACGTT 57.359 33.333 22.16 11.65 0.00 3.99
148 149 8.535690 AGGCAAGCTTATATTATAAGACGTTC 57.464 34.615 22.16 10.88 0.00 3.95
149 150 8.148351 AGGCAAGCTTATATTATAAGACGTTCA 58.852 33.333 22.16 0.00 0.00 3.18
150 151 8.221766 GGCAAGCTTATATTATAAGACGTTCAC 58.778 37.037 22.16 7.07 0.00 3.18
151 152 8.221766 GCAAGCTTATATTATAAGACGTTCACC 58.778 37.037 22.16 6.51 0.00 4.02
152 153 9.256477 CAAGCTTATATTATAAGACGTTCACCA 57.744 33.333 22.16 0.00 0.00 4.17
153 154 9.826574 AAGCTTATATTATAAGACGTTCACCAA 57.173 29.630 22.16 0.00 0.00 3.67
154 155 9.998106 AGCTTATATTATAAGACGTTCACCAAT 57.002 29.630 22.16 0.00 0.00 3.16
159 160 9.706691 ATATTATAAGACGTTCACCAATACAGG 57.293 33.333 0.00 0.00 0.00 4.00
160 161 5.670792 ATAAGACGTTCACCAATACAGGA 57.329 39.130 0.00 0.00 0.00 3.86
161 162 3.314541 AGACGTTCACCAATACAGGAC 57.685 47.619 0.00 0.00 0.00 3.85
162 163 2.631062 AGACGTTCACCAATACAGGACA 59.369 45.455 0.00 0.00 0.00 4.02
163 164 3.260884 AGACGTTCACCAATACAGGACAT 59.739 43.478 0.00 0.00 0.00 3.06
164 165 4.000988 GACGTTCACCAATACAGGACATT 58.999 43.478 0.00 0.00 0.00 2.71
165 166 4.394729 ACGTTCACCAATACAGGACATTT 58.605 39.130 0.00 0.00 0.00 2.32
166 167 4.825085 ACGTTCACCAATACAGGACATTTT 59.175 37.500 0.00 0.00 0.00 1.82
167 168 5.998981 ACGTTCACCAATACAGGACATTTTA 59.001 36.000 0.00 0.00 0.00 1.52
168 169 6.657541 ACGTTCACCAATACAGGACATTTTAT 59.342 34.615 0.00 0.00 0.00 1.40
169 170 7.825270 ACGTTCACCAATACAGGACATTTTATA 59.175 33.333 0.00 0.00 0.00 0.98
170 171 8.120465 CGTTCACCAATACAGGACATTTTATAC 58.880 37.037 0.00 0.00 0.00 1.47
171 172 8.952278 GTTCACCAATACAGGACATTTTATACA 58.048 33.333 0.00 0.00 0.00 2.29
172 173 8.731275 TCACCAATACAGGACATTTTATACAG 57.269 34.615 0.00 0.00 0.00 2.74
173 174 7.773224 TCACCAATACAGGACATTTTATACAGG 59.227 37.037 0.00 0.00 0.00 4.00
174 175 6.546034 ACCAATACAGGACATTTTATACAGGC 59.454 38.462 0.00 0.00 0.00 4.85
175 176 6.772716 CCAATACAGGACATTTTATACAGGCT 59.227 38.462 0.00 0.00 0.00 4.58
176 177 7.285401 CCAATACAGGACATTTTATACAGGCTT 59.715 37.037 0.00 0.00 0.00 4.35
177 178 9.337396 CAATACAGGACATTTTATACAGGCTTA 57.663 33.333 0.00 0.00 0.00 3.09
203 204 7.787725 ATTATAAGACGTTTTTCTAGGCTGG 57.212 36.000 0.00 0.00 0.00 4.85
204 205 1.809684 AGACGTTTTTCTAGGCTGGC 58.190 50.000 0.00 0.00 0.00 4.85
205 206 1.348036 AGACGTTTTTCTAGGCTGGCT 59.652 47.619 9.28 9.28 0.00 4.75
206 207 2.152016 GACGTTTTTCTAGGCTGGCTT 58.848 47.619 9.68 0.00 0.00 4.35
207 208 2.552743 GACGTTTTTCTAGGCTGGCTTT 59.447 45.455 9.68 0.00 0.00 3.51
208 209 2.956333 ACGTTTTTCTAGGCTGGCTTTT 59.044 40.909 9.68 0.00 0.00 2.27
209 210 4.139038 ACGTTTTTCTAGGCTGGCTTTTA 58.861 39.130 9.68 0.00 0.00 1.52
210 211 4.765339 ACGTTTTTCTAGGCTGGCTTTTAT 59.235 37.500 9.68 0.00 0.00 1.40
211 212 5.095490 CGTTTTTCTAGGCTGGCTTTTATG 58.905 41.667 9.68 0.00 0.00 1.90
212 213 5.335661 CGTTTTTCTAGGCTGGCTTTTATGT 60.336 40.000 9.68 0.00 0.00 2.29
213 214 6.455647 GTTTTTCTAGGCTGGCTTTTATGTT 58.544 36.000 9.68 0.00 0.00 2.71
214 215 5.643379 TTTCTAGGCTGGCTTTTATGTTG 57.357 39.130 9.68 0.00 0.00 3.33
215 216 4.568072 TCTAGGCTGGCTTTTATGTTGA 57.432 40.909 9.68 0.00 0.00 3.18
216 217 4.917385 TCTAGGCTGGCTTTTATGTTGAA 58.083 39.130 9.68 0.00 0.00 2.69
217 218 5.509498 TCTAGGCTGGCTTTTATGTTGAAT 58.491 37.500 9.68 0.00 0.00 2.57
218 219 4.725790 AGGCTGGCTTTTATGTTGAATC 57.274 40.909 0.00 0.00 0.00 2.52
219 220 4.347607 AGGCTGGCTTTTATGTTGAATCT 58.652 39.130 0.00 0.00 0.00 2.40
220 221 5.509498 AGGCTGGCTTTTATGTTGAATCTA 58.491 37.500 0.00 0.00 0.00 1.98
221 222 5.951747 AGGCTGGCTTTTATGTTGAATCTAA 59.048 36.000 0.00 0.00 0.00 2.10
222 223 6.437162 AGGCTGGCTTTTATGTTGAATCTAAA 59.563 34.615 0.00 0.00 0.00 1.85
223 224 7.039082 AGGCTGGCTTTTATGTTGAATCTAAAA 60.039 33.333 0.00 0.00 0.00 1.52
224 225 7.765819 GGCTGGCTTTTATGTTGAATCTAAAAT 59.234 33.333 0.00 0.00 0.00 1.82
225 226 8.598075 GCTGGCTTTTATGTTGAATCTAAAATG 58.402 33.333 0.00 0.00 0.00 2.32
226 227 9.643693 CTGGCTTTTATGTTGAATCTAAAATGT 57.356 29.630 0.00 0.00 0.00 2.71
227 228 9.638239 TGGCTTTTATGTTGAATCTAAAATGTC 57.362 29.630 0.00 0.00 0.00 3.06
228 229 9.087424 GGCTTTTATGTTGAATCTAAAATGTCC 57.913 33.333 0.00 0.00 0.00 4.02
229 230 9.860898 GCTTTTATGTTGAATCTAAAATGTCCT 57.139 29.630 0.00 0.00 0.00 3.85
236 237 9.613428 TGTTGAATCTAAAATGTCCTATACTGG 57.387 33.333 0.00 0.00 0.00 4.00
237 238 8.560374 GTTGAATCTAAAATGTCCTATACTGGC 58.440 37.037 0.00 0.00 0.00 4.85
238 239 8.034313 TGAATCTAAAATGTCCTATACTGGCT 57.966 34.615 0.00 0.00 0.00 4.75
239 240 8.494433 TGAATCTAAAATGTCCTATACTGGCTT 58.506 33.333 0.00 0.00 0.00 4.35
240 241 9.343539 GAATCTAAAATGTCCTATACTGGCTTT 57.656 33.333 0.00 0.00 0.00 3.51
241 242 9.700831 AATCTAAAATGTCCTATACTGGCTTTT 57.299 29.630 0.00 0.00 0.00 2.27
242 243 9.700831 ATCTAAAATGTCCTATACTGGCTTTTT 57.299 29.630 0.00 0.00 32.03 1.94
258 259 9.830975 ACTGGCTTTTTATTTTAAACTCAACAT 57.169 25.926 0.00 0.00 0.00 2.71
274 275 9.498307 AAACTCAACATACAAGTTTCTAAAACG 57.502 29.630 0.00 0.00 38.51 3.60
275 276 8.205131 ACTCAACATACAAGTTTCTAAAACGT 57.795 30.769 0.00 0.00 0.00 3.99
276 277 8.333186 ACTCAACATACAAGTTTCTAAAACGTC 58.667 33.333 0.00 0.00 0.00 4.34
277 278 8.428186 TCAACATACAAGTTTCTAAAACGTCT 57.572 30.769 0.00 0.00 0.00 4.18
278 279 8.885722 TCAACATACAAGTTTCTAAAACGTCTT 58.114 29.630 0.00 0.00 0.00 3.01
337 338 5.921962 ATCCCCAAAAATCTGAGTAAAGC 57.078 39.130 0.00 0.00 0.00 3.51
338 339 4.086457 TCCCCAAAAATCTGAGTAAAGCC 58.914 43.478 0.00 0.00 0.00 4.35
339 340 4.089361 CCCCAAAAATCTGAGTAAAGCCT 58.911 43.478 0.00 0.00 0.00 4.58
340 341 5.014755 TCCCCAAAAATCTGAGTAAAGCCTA 59.985 40.000 0.00 0.00 0.00 3.93
341 342 5.893824 CCCCAAAAATCTGAGTAAAGCCTAT 59.106 40.000 0.00 0.00 0.00 2.57
342 343 6.183360 CCCCAAAAATCTGAGTAAAGCCTATG 60.183 42.308 0.00 0.00 0.00 2.23
343 344 6.603201 CCCAAAAATCTGAGTAAAGCCTATGA 59.397 38.462 0.00 0.00 0.00 2.15
344 345 7.122650 CCCAAAAATCTGAGTAAAGCCTATGAA 59.877 37.037 0.00 0.00 0.00 2.57
345 346 8.522830 CCAAAAATCTGAGTAAAGCCTATGAAA 58.477 33.333 0.00 0.00 0.00 2.69
346 347 9.346725 CAAAAATCTGAGTAAAGCCTATGAAAC 57.653 33.333 0.00 0.00 0.00 2.78
347 348 7.631717 AAATCTGAGTAAAGCCTATGAAACC 57.368 36.000 0.00 0.00 0.00 3.27
348 349 5.099042 TCTGAGTAAAGCCTATGAAACCC 57.901 43.478 0.00 0.00 0.00 4.11
349 350 4.783227 TCTGAGTAAAGCCTATGAAACCCT 59.217 41.667 0.00 0.00 0.00 4.34
350 351 5.250774 TCTGAGTAAAGCCTATGAAACCCTT 59.749 40.000 0.00 0.00 0.00 3.95
351 352 5.887754 TGAGTAAAGCCTATGAAACCCTTT 58.112 37.500 0.00 0.00 0.00 3.11
352 353 6.311735 TGAGTAAAGCCTATGAAACCCTTTT 58.688 36.000 0.00 0.00 0.00 2.27
353 354 6.780522 TGAGTAAAGCCTATGAAACCCTTTTT 59.219 34.615 0.00 0.00 0.00 1.94
354 355 7.039993 TGAGTAAAGCCTATGAAACCCTTTTTC 60.040 37.037 0.00 0.00 0.00 2.29
355 356 7.010771 AGTAAAGCCTATGAAACCCTTTTTCT 58.989 34.615 0.00 0.00 0.00 2.52
356 357 5.728637 AAGCCTATGAAACCCTTTTTCTG 57.271 39.130 0.00 0.00 0.00 3.02
357 358 4.998051 AGCCTATGAAACCCTTTTTCTGA 58.002 39.130 0.00 0.00 0.00 3.27
358 359 5.583932 AGCCTATGAAACCCTTTTTCTGAT 58.416 37.500 0.00 0.00 0.00 2.90
359 360 6.019108 AGCCTATGAAACCCTTTTTCTGATT 58.981 36.000 0.00 0.00 0.00 2.57
360 361 7.182060 AGCCTATGAAACCCTTTTTCTGATTA 58.818 34.615 0.00 0.00 0.00 1.75
361 362 7.673926 AGCCTATGAAACCCTTTTTCTGATTAA 59.326 33.333 0.00 0.00 0.00 1.40
362 363 8.311109 GCCTATGAAACCCTTTTTCTGATTAAA 58.689 33.333 0.00 0.00 0.00 1.52
363 364 9.860898 CCTATGAAACCCTTTTTCTGATTAAAG 57.139 33.333 6.04 6.04 0.00 1.85
364 365 9.358872 CTATGAAACCCTTTTTCTGATTAAAGC 57.641 33.333 7.07 0.00 31.54 3.51
365 366 7.118496 TGAAACCCTTTTTCTGATTAAAGCA 57.882 32.000 7.07 0.00 31.54 3.91
366 367 7.560368 TGAAACCCTTTTTCTGATTAAAGCAA 58.440 30.769 7.07 0.00 31.54 3.91
367 368 7.710475 TGAAACCCTTTTTCTGATTAAAGCAAG 59.290 33.333 7.07 0.00 31.54 4.01
368 369 5.541845 ACCCTTTTTCTGATTAAAGCAAGC 58.458 37.500 7.07 0.00 31.54 4.01
369 370 5.305386 ACCCTTTTTCTGATTAAAGCAAGCT 59.695 36.000 7.07 0.00 31.54 3.74
370 371 6.493458 ACCCTTTTTCTGATTAAAGCAAGCTA 59.507 34.615 0.00 0.00 31.54 3.32
371 372 7.015195 ACCCTTTTTCTGATTAAAGCAAGCTAA 59.985 33.333 0.00 0.00 31.54 3.09
372 373 7.872483 CCCTTTTTCTGATTAAAGCAAGCTAAA 59.128 33.333 0.00 0.00 31.54 1.85
373 374 9.260002 CCTTTTTCTGATTAAAGCAAGCTAAAA 57.740 29.630 0.00 0.00 31.54 1.52
379 380 8.677300 TCTGATTAAAGCAAGCTAAAATACTGG 58.323 33.333 0.00 0.00 0.00 4.00
380 381 7.771183 TGATTAAAGCAAGCTAAAATACTGGG 58.229 34.615 0.00 0.00 0.00 4.45
381 382 7.613801 TGATTAAAGCAAGCTAAAATACTGGGA 59.386 33.333 0.00 0.00 0.00 4.37
382 383 5.904362 AAAGCAAGCTAAAATACTGGGAG 57.096 39.130 0.00 0.00 0.00 4.30
383 384 3.891049 AGCAAGCTAAAATACTGGGAGG 58.109 45.455 0.00 0.00 0.00 4.30
384 385 2.359214 GCAAGCTAAAATACTGGGAGGC 59.641 50.000 0.00 0.00 0.00 4.70
385 386 2.614057 CAAGCTAAAATACTGGGAGGCG 59.386 50.000 0.00 0.00 0.00 5.52
386 387 2.116238 AGCTAAAATACTGGGAGGCGA 58.884 47.619 0.00 0.00 0.00 5.54
387 388 2.706190 AGCTAAAATACTGGGAGGCGAT 59.294 45.455 0.00 0.00 0.00 4.58
388 389 3.136626 AGCTAAAATACTGGGAGGCGATT 59.863 43.478 0.00 0.00 0.00 3.34
389 390 3.883489 GCTAAAATACTGGGAGGCGATTT 59.117 43.478 0.00 0.00 0.00 2.17
390 391 4.261197 GCTAAAATACTGGGAGGCGATTTG 60.261 45.833 0.00 0.00 0.00 2.32
391 392 3.366052 AAATACTGGGAGGCGATTTGT 57.634 42.857 0.00 0.00 0.00 2.83
392 393 4.497291 AAATACTGGGAGGCGATTTGTA 57.503 40.909 0.00 0.00 0.00 2.41
393 394 4.497291 AATACTGGGAGGCGATTTGTAA 57.503 40.909 0.00 0.00 0.00 2.41
394 395 2.109425 ACTGGGAGGCGATTTGTAAC 57.891 50.000 0.00 0.00 0.00 2.50
395 396 1.006832 CTGGGAGGCGATTTGTAACG 58.993 55.000 0.00 0.00 0.00 3.18
396 397 0.322322 TGGGAGGCGATTTGTAACGT 59.678 50.000 0.00 0.00 0.00 3.99
397 398 1.004595 GGGAGGCGATTTGTAACGTC 58.995 55.000 0.00 0.00 0.00 4.34
398 399 0.643820 GGAGGCGATTTGTAACGTCG 59.356 55.000 0.00 0.00 39.16 5.12
399 400 0.643820 GAGGCGATTTGTAACGTCGG 59.356 55.000 0.00 0.00 39.16 4.79
400 401 0.037975 AGGCGATTTGTAACGTCGGT 60.038 50.000 0.00 0.00 39.16 4.69
401 402 0.094046 GGCGATTTGTAACGTCGGTG 59.906 55.000 0.00 0.00 36.00 4.94
402 403 0.517742 GCGATTTGTAACGTCGGTGC 60.518 55.000 0.00 0.00 36.00 5.01
403 404 0.785378 CGATTTGTAACGTCGGTGCA 59.215 50.000 0.00 0.00 0.00 4.57
404 405 1.201769 CGATTTGTAACGTCGGTGCAG 60.202 52.381 0.31 0.00 0.00 4.41
405 406 1.127951 GATTTGTAACGTCGGTGCAGG 59.872 52.381 0.31 0.00 0.00 4.85
406 407 0.881159 TTTGTAACGTCGGTGCAGGG 60.881 55.000 0.31 0.00 0.00 4.45
407 408 1.746322 TTGTAACGTCGGTGCAGGGA 61.746 55.000 0.31 0.00 0.00 4.20
408 409 1.735559 GTAACGTCGGTGCAGGGAC 60.736 63.158 6.94 6.94 0.00 4.46
409 410 2.201708 TAACGTCGGTGCAGGGACA 61.202 57.895 15.19 0.00 32.74 4.02
410 411 2.424705 TAACGTCGGTGCAGGGACAC 62.425 60.000 15.19 0.00 39.94 3.67
415 416 3.127533 GGTGCAGGGACACGCATC 61.128 66.667 0.00 0.00 41.65 3.91
416 417 3.127533 GTGCAGGGACACGCATCC 61.128 66.667 0.00 0.00 40.89 3.51
422 423 2.355115 GGACACGCATCCCCCTTT 59.645 61.111 0.00 0.00 31.94 3.11
423 424 1.749258 GGACACGCATCCCCCTTTC 60.749 63.158 0.00 0.00 31.94 2.62
424 425 1.749258 GACACGCATCCCCCTTTCC 60.749 63.158 0.00 0.00 0.00 3.13
425 426 2.440247 CACGCATCCCCCTTTCCC 60.440 66.667 0.00 0.00 0.00 3.97
426 427 2.614013 ACGCATCCCCCTTTCCCT 60.614 61.111 0.00 0.00 0.00 4.20
427 428 2.238701 ACGCATCCCCCTTTCCCTT 61.239 57.895 0.00 0.00 0.00 3.95
428 429 1.000359 CGCATCCCCCTTTCCCTTT 60.000 57.895 0.00 0.00 0.00 3.11
429 430 0.614697 CGCATCCCCCTTTCCCTTTT 60.615 55.000 0.00 0.00 0.00 2.27
430 431 0.904649 GCATCCCCCTTTCCCTTTTG 59.095 55.000 0.00 0.00 0.00 2.44
431 432 1.571955 CATCCCCCTTTCCCTTTTGG 58.428 55.000 0.00 0.00 39.97 3.28
432 433 0.252696 ATCCCCCTTTCCCTTTTGGC 60.253 55.000 0.00 0.00 38.58 4.52
433 434 1.158466 CCCCCTTTCCCTTTTGGCT 59.842 57.895 0.00 0.00 38.58 4.75
434 435 0.473694 CCCCCTTTCCCTTTTGGCTT 60.474 55.000 0.00 0.00 38.58 4.35
435 436 1.434188 CCCCTTTCCCTTTTGGCTTT 58.566 50.000 0.00 0.00 38.58 3.51
436 437 1.774254 CCCCTTTCCCTTTTGGCTTTT 59.226 47.619 0.00 0.00 38.58 2.27
437 438 2.487086 CCCCTTTCCCTTTTGGCTTTTG 60.487 50.000 0.00 0.00 38.58 2.44
438 439 2.437651 CCCTTTCCCTTTTGGCTTTTGA 59.562 45.455 0.00 0.00 38.58 2.69
439 440 3.072915 CCCTTTCCCTTTTGGCTTTTGAT 59.927 43.478 0.00 0.00 38.58 2.57
440 441 4.446167 CCCTTTCCCTTTTGGCTTTTGATT 60.446 41.667 0.00 0.00 38.58 2.57
441 442 5.132502 CCTTTCCCTTTTGGCTTTTGATTT 58.867 37.500 0.00 0.00 38.58 2.17
442 443 5.593909 CCTTTCCCTTTTGGCTTTTGATTTT 59.406 36.000 0.00 0.00 38.58 1.82
443 444 6.096705 CCTTTCCCTTTTGGCTTTTGATTTTT 59.903 34.615 0.00 0.00 38.58 1.94
444 445 7.284261 CCTTTCCCTTTTGGCTTTTGATTTTTA 59.716 33.333 0.00 0.00 38.58 1.52
445 446 8.581253 TTTCCCTTTTGGCTTTTGATTTTTAA 57.419 26.923 0.00 0.00 38.58 1.52
446 447 8.759481 TTCCCTTTTGGCTTTTGATTTTTAAT 57.241 26.923 0.00 0.00 38.58 1.40
447 448 9.853177 TTCCCTTTTGGCTTTTGATTTTTAATA 57.147 25.926 0.00 0.00 38.58 0.98
515 516 9.045223 TCATATCTTTGTTTCTGATAACGATGG 57.955 33.333 0.00 0.00 0.00 3.51
516 517 8.830580 CATATCTTTGTTTCTGATAACGATGGT 58.169 33.333 0.00 0.00 0.00 3.55
517 518 7.687941 ATCTTTGTTTCTGATAACGATGGTT 57.312 32.000 0.00 0.00 40.20 3.67
518 519 7.504924 TCTTTGTTTCTGATAACGATGGTTT 57.495 32.000 0.00 0.00 37.58 3.27
519 520 7.936584 TCTTTGTTTCTGATAACGATGGTTTT 58.063 30.769 0.00 0.00 37.58 2.43
520 521 8.073768 TCTTTGTTTCTGATAACGATGGTTTTC 58.926 33.333 0.00 1.16 37.58 2.29
521 522 6.869315 TGTTTCTGATAACGATGGTTTTCA 57.131 33.333 11.90 11.90 40.35 2.69
522 523 7.265647 TGTTTCTGATAACGATGGTTTTCAA 57.734 32.000 13.10 4.42 41.46 2.69
523 524 7.708051 TGTTTCTGATAACGATGGTTTTCAAA 58.292 30.769 13.10 8.77 41.46 2.69
524 525 8.356657 TGTTTCTGATAACGATGGTTTTCAAAT 58.643 29.630 13.10 0.00 41.46 2.32
525 526 8.638565 GTTTCTGATAACGATGGTTTTCAAATG 58.361 33.333 13.10 4.55 41.46 2.32
526 527 7.447374 TCTGATAACGATGGTTTTCAAATGT 57.553 32.000 13.10 0.00 41.46 2.71
527 528 7.304735 TCTGATAACGATGGTTTTCAAATGTG 58.695 34.615 13.10 3.99 41.46 3.21
528 529 6.385843 TGATAACGATGGTTTTCAAATGTGG 58.614 36.000 10.45 0.00 39.90 4.17
529 530 4.664150 AACGATGGTTTTCAAATGTGGT 57.336 36.364 0.00 0.00 30.42 4.16
530 531 4.237349 ACGATGGTTTTCAAATGTGGTC 57.763 40.909 0.00 0.00 0.00 4.02
531 532 3.005367 ACGATGGTTTTCAAATGTGGTCC 59.995 43.478 0.00 0.00 0.00 4.46
532 533 3.005261 CGATGGTTTTCAAATGTGGTCCA 59.995 43.478 0.00 0.00 0.00 4.02
533 534 4.321899 CGATGGTTTTCAAATGTGGTCCAT 60.322 41.667 0.00 0.00 37.18 3.41
534 535 5.550290 GATGGTTTTCAAATGTGGTCCATT 58.450 37.500 0.00 0.00 45.81 3.16
672 673 1.065358 AATCGCAAGTTACGGTCACG 58.935 50.000 0.00 0.00 42.52 4.35
782 783 1.153568 CTGGACATGGCACGTCGAT 60.154 57.895 7.69 0.00 34.04 3.59
802 803 4.086025 CGATAGAACTTAAAGAAGCGAGCG 60.086 45.833 0.00 0.00 35.06 5.03
1134 1167 7.523293 TCTTATTTGCCTTGAGATTTTGACA 57.477 32.000 0.00 0.00 0.00 3.58
1319 1352 8.686334 GGAGAAAACATGTGGTATGATTATGTT 58.314 33.333 0.00 0.00 42.03 2.71
1468 1501 7.443879 TGTGAAGATAACTTGCAATGACAACTA 59.556 33.333 0.00 0.00 36.39 2.24
1470 1503 9.665719 TGAAGATAACTTGCAATGACAACTATA 57.334 29.630 0.00 0.00 36.39 1.31
1701 4143 5.104485 GGAGGTAATAGCAAAGAAAGGAGGA 60.104 44.000 0.00 0.00 0.00 3.71
1876 4318 9.793259 TTGAAGAATAAGAACATGAACCTACTT 57.207 29.630 0.00 0.00 0.00 2.24
1899 4341 6.723298 TTGTCACAGGTAACATTTCCAAAT 57.277 33.333 0.00 0.00 41.41 2.32
1916 4358 6.844696 TCCAAATATTTCAGTGCTCGATAC 57.155 37.500 0.00 0.00 0.00 2.24
1926 4368 5.912892 TCAGTGCTCGATACATCCATTTTA 58.087 37.500 3.24 0.00 0.00 1.52
1927 4369 5.753438 TCAGTGCTCGATACATCCATTTTAC 59.247 40.000 3.24 0.00 0.00 2.01
1928 4370 5.050091 CAGTGCTCGATACATCCATTTTACC 60.050 44.000 3.24 0.00 0.00 2.85
1929 4371 5.057149 GTGCTCGATACATCCATTTTACCT 58.943 41.667 0.00 0.00 0.00 3.08
1930 4372 5.527582 GTGCTCGATACATCCATTTTACCTT 59.472 40.000 0.00 0.00 0.00 3.50
1931 4373 5.527214 TGCTCGATACATCCATTTTACCTTG 59.473 40.000 0.00 0.00 0.00 3.61
1932 4374 5.527582 GCTCGATACATCCATTTTACCTTGT 59.472 40.000 0.00 0.00 0.00 3.16
1933 4375 6.511767 GCTCGATACATCCATTTTACCTTGTG 60.512 42.308 0.00 0.00 0.00 3.33
1934 4376 5.820423 TCGATACATCCATTTTACCTTGTGG 59.180 40.000 0.00 0.00 39.83 4.17
1939 4381 7.790782 ACATCCATTTTACCTTGTGGTTAAT 57.209 32.000 0.00 0.00 46.05 1.40
1958 4400 7.223971 TGGTTAATATTTCAGTGCTCGATACAC 59.776 37.037 10.00 10.00 38.35 2.90
1967 4409 4.034048 CAGTGCTCGATACACCCATTTTAC 59.966 45.833 13.43 0.00 38.87 2.01
1996 4438 5.926542 TGGCTAATATTTCAGTGCTCGATAC 59.073 40.000 0.00 0.00 0.00 2.24
2007 4449 5.753438 TCAGTGCTCGATACATCCATTTTAC 59.247 40.000 3.24 0.00 0.00 2.01
2008 4450 5.050091 CAGTGCTCGATACATCCATTTTACC 60.050 44.000 3.24 0.00 0.00 2.85
2009 4451 5.057149 GTGCTCGATACATCCATTTTACCT 58.943 41.667 0.00 0.00 0.00 3.08
2010 4452 5.527582 GTGCTCGATACATCCATTTTACCTT 59.472 40.000 0.00 0.00 0.00 3.50
2011 4453 5.527214 TGCTCGATACATCCATTTTACCTTG 59.473 40.000 0.00 0.00 0.00 3.61
2012 4454 5.527582 GCTCGATACATCCATTTTACCTTGT 59.472 40.000 0.00 0.00 0.00 3.16
2013 4455 6.511767 GCTCGATACATCCATTTTACCTTGTG 60.512 42.308 0.00 0.00 0.00 3.33
2014 4456 5.820423 TCGATACATCCATTTTACCTTGTGG 59.180 40.000 0.00 0.00 39.83 4.17
2015 4457 5.505654 CGATACATCCATTTTACCTTGTGGC 60.506 44.000 0.00 0.00 36.63 5.01
2016 4458 3.778265 ACATCCATTTTACCTTGTGGCT 58.222 40.909 0.00 0.00 36.63 4.75
2017 4459 4.929479 ACATCCATTTTACCTTGTGGCTA 58.071 39.130 0.00 0.00 36.63 3.93
2018 4460 5.329399 ACATCCATTTTACCTTGTGGCTAA 58.671 37.500 0.00 0.00 36.63 3.09
2019 4461 5.957774 ACATCCATTTTACCTTGTGGCTAAT 59.042 36.000 0.00 0.00 36.63 1.73
2020 4462 7.122715 ACATCCATTTTACCTTGTGGCTAATA 58.877 34.615 0.00 0.00 36.63 0.98
2021 4463 7.784550 ACATCCATTTTACCTTGTGGCTAATAT 59.215 33.333 0.00 0.00 36.63 1.28
2022 4464 8.641541 CATCCATTTTACCTTGTGGCTAATATT 58.358 33.333 0.00 0.00 36.63 1.28
2023 4465 8.232913 TCCATTTTACCTTGTGGCTAATATTC 57.767 34.615 0.00 0.00 36.63 1.75
2024 4466 7.286775 TCCATTTTACCTTGTGGCTAATATTCC 59.713 37.037 0.00 0.00 36.63 3.01
2025 4467 7.069331 CCATTTTACCTTGTGGCTAATATTCCA 59.931 37.037 0.00 0.00 36.63 3.53
2026 4468 7.639113 TTTTACCTTGTGGCTAATATTCCAG 57.361 36.000 0.00 0.00 36.63 3.86
2027 4469 4.862641 ACCTTGTGGCTAATATTCCAGT 57.137 40.909 0.00 0.00 36.63 4.00
2028 4470 4.526970 ACCTTGTGGCTAATATTCCAGTG 58.473 43.478 0.00 0.00 36.63 3.66
2029 4471 3.316308 CCTTGTGGCTAATATTCCAGTGC 59.684 47.826 0.00 0.00 32.15 4.40
2030 4472 3.931907 TGTGGCTAATATTCCAGTGCT 57.068 42.857 0.00 0.00 32.15 4.40
2031 4473 4.235079 TGTGGCTAATATTCCAGTGCTT 57.765 40.909 0.00 0.00 32.15 3.91
2032 4474 3.947196 TGTGGCTAATATTCCAGTGCTTG 59.053 43.478 0.00 0.00 32.15 4.01
2033 4475 4.199310 GTGGCTAATATTCCAGTGCTTGA 58.801 43.478 0.00 0.00 32.15 3.02
2034 4476 4.823989 GTGGCTAATATTCCAGTGCTTGAT 59.176 41.667 0.00 0.00 32.15 2.57
2035 4477 5.997746 GTGGCTAATATTCCAGTGCTTGATA 59.002 40.000 0.00 0.00 32.15 2.15
2036 4478 5.997746 TGGCTAATATTCCAGTGCTTGATAC 59.002 40.000 0.00 0.00 0.00 2.24
2037 4479 5.997746 GGCTAATATTCCAGTGCTTGATACA 59.002 40.000 0.00 0.00 0.00 2.29
2038 4480 6.073003 GGCTAATATTCCAGTGCTTGATACAC 60.073 42.308 0.00 0.00 38.35 2.90
2039 4481 6.073003 GCTAATATTCCAGTGCTTGATACACC 60.073 42.308 0.00 0.00 38.87 4.16
2040 4482 2.489938 TTCCAGTGCTTGATACACCC 57.510 50.000 0.00 0.00 38.87 4.61
2041 4483 1.357137 TCCAGTGCTTGATACACCCA 58.643 50.000 0.00 0.00 38.87 4.51
2042 4484 1.915489 TCCAGTGCTTGATACACCCAT 59.085 47.619 0.00 0.00 38.87 4.00
2043 4485 2.308570 TCCAGTGCTTGATACACCCATT 59.691 45.455 0.00 0.00 38.87 3.16
2044 4486 3.091545 CCAGTGCTTGATACACCCATTT 58.908 45.455 0.00 0.00 38.87 2.32
2045 4487 3.129287 CCAGTGCTTGATACACCCATTTC 59.871 47.826 0.00 0.00 38.87 2.17
2046 4488 3.758023 CAGTGCTTGATACACCCATTTCA 59.242 43.478 0.00 0.00 38.87 2.69
2047 4489 3.758554 AGTGCTTGATACACCCATTTCAC 59.241 43.478 0.00 0.00 38.87 3.18
2048 4490 3.088532 TGCTTGATACACCCATTTCACC 58.911 45.455 0.00 0.00 0.00 4.02
2049 4491 3.245229 TGCTTGATACACCCATTTCACCT 60.245 43.478 0.00 0.00 0.00 4.00
2050 4492 3.763897 GCTTGATACACCCATTTCACCTT 59.236 43.478 0.00 0.00 0.00 3.50
2051 4493 4.380867 GCTTGATACACCCATTTCACCTTG 60.381 45.833 0.00 0.00 0.00 3.61
2052 4494 4.380843 TGATACACCCATTTCACCTTGT 57.619 40.909 0.00 0.00 0.00 3.16
2053 4495 4.078537 TGATACACCCATTTCACCTTGTG 58.921 43.478 0.00 0.00 34.45 3.33
2054 4496 1.703411 ACACCCATTTCACCTTGTGG 58.297 50.000 0.00 0.00 39.83 4.17
2055 4497 0.318120 CACCCATTTCACCTTGTGGC 59.682 55.000 0.00 0.00 36.63 5.01
2056 4498 0.188342 ACCCATTTCACCTTGTGGCT 59.812 50.000 0.00 0.00 36.63 4.75
2078 4560 6.128795 GGCTAATATTTCAGTGCTCGATACAC 60.129 42.308 10.00 10.00 38.35 2.90
2091 4573 5.104859 TGCTCGATACACCCATTTTACCTTA 60.105 40.000 0.00 0.00 0.00 2.69
2112 4594 6.712095 CCTTATGGCTAATATTTCAGTGCTCA 59.288 38.462 0.00 0.00 0.00 4.26
2161 4723 2.492019 TTCAGTGCTCGATACATCCG 57.508 50.000 3.24 0.00 0.00 4.18
2192 4994 4.842574 TGTGGCTAATATTTCAGTGCTCA 58.157 39.130 0.00 0.00 0.00 4.26
2405 5265 9.129209 GTTAAAAATAGGATCTTGCTGTGAAAC 57.871 33.333 0.00 0.00 37.35 2.78
2489 5349 2.664402 TGCCTGAAAGCTCTTTCCTT 57.336 45.000 16.93 0.00 46.15 3.36
2585 5445 1.004745 GAAGTGATGAGGGAGGCCAAA 59.995 52.381 5.01 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.072487 GGATGCCAGCCCAGTAGGA 61.072 63.158 0.00 0.00 38.24 2.94
2 3 2.074948 AGGATGCCAGCCCAGTAGG 61.075 63.158 0.00 0.00 39.47 3.18
3 4 1.147824 CAGGATGCCAGCCCAGTAG 59.852 63.158 0.00 0.00 0.00 2.57
4 5 0.326143 TACAGGATGCCAGCCCAGTA 60.326 55.000 0.00 0.00 42.53 2.74
5 6 1.616327 TACAGGATGCCAGCCCAGT 60.616 57.895 0.00 0.00 42.53 4.00
6 7 1.147824 CTACAGGATGCCAGCCCAG 59.852 63.158 0.00 0.00 42.53 4.45
7 8 2.377810 CCTACAGGATGCCAGCCCA 61.378 63.158 0.00 0.00 42.53 5.36
8 9 2.512896 CCTACAGGATGCCAGCCC 59.487 66.667 0.00 0.00 42.53 5.19
9 10 2.203266 GCCTACAGGATGCCAGCC 60.203 66.667 0.00 0.00 42.53 4.85
10 11 2.590007 CGCCTACAGGATGCCAGC 60.590 66.667 0.00 0.00 42.53 4.85
11 12 1.068753 CTCGCCTACAGGATGCCAG 59.931 63.158 0.00 0.00 42.53 4.85
12 13 2.434843 CCTCGCCTACAGGATGCCA 61.435 63.158 0.00 0.00 42.53 4.92
13 14 2.134287 TCCTCGCCTACAGGATGCC 61.134 63.158 0.00 0.00 42.53 4.40
14 15 3.538614 TCCTCGCCTACAGGATGC 58.461 61.111 0.00 0.00 42.53 3.91
17 18 2.709934 ACTACTATCCTCGCCTACAGGA 59.290 50.000 0.00 0.00 44.46 3.86
18 19 3.075884 GACTACTATCCTCGCCTACAGG 58.924 54.545 0.00 0.00 38.53 4.00
19 20 3.749088 CAGACTACTATCCTCGCCTACAG 59.251 52.174 0.00 0.00 0.00 2.74
20 21 3.390311 TCAGACTACTATCCTCGCCTACA 59.610 47.826 0.00 0.00 0.00 2.74
21 22 3.747529 GTCAGACTACTATCCTCGCCTAC 59.252 52.174 0.00 0.00 0.00 3.18
22 23 3.554544 CGTCAGACTACTATCCTCGCCTA 60.555 52.174 0.00 0.00 0.00 3.93
23 24 2.807472 CGTCAGACTACTATCCTCGCCT 60.807 54.545 0.00 0.00 0.00 5.52
24 25 1.532007 CGTCAGACTACTATCCTCGCC 59.468 57.143 0.00 0.00 0.00 5.54
25 26 1.532007 CCGTCAGACTACTATCCTCGC 59.468 57.143 0.00 0.00 0.00 5.03
26 27 2.144730 CCCGTCAGACTACTATCCTCG 58.855 57.143 0.00 0.00 0.00 4.63
27 28 1.881324 GCCCGTCAGACTACTATCCTC 59.119 57.143 0.00 0.00 0.00 3.71
28 29 1.495574 AGCCCGTCAGACTACTATCCT 59.504 52.381 0.00 0.00 0.00 3.24
29 30 1.984066 AGCCCGTCAGACTACTATCC 58.016 55.000 0.00 0.00 0.00 2.59
30 31 4.005487 TCTAGCCCGTCAGACTACTATC 57.995 50.000 0.00 0.00 0.00 2.08
31 32 4.434545 TTCTAGCCCGTCAGACTACTAT 57.565 45.455 0.00 0.00 0.00 2.12
32 33 3.920231 TTCTAGCCCGTCAGACTACTA 57.080 47.619 0.00 0.00 0.00 1.82
33 34 2.803030 TTCTAGCCCGTCAGACTACT 57.197 50.000 0.00 0.00 0.00 2.57
34 35 4.387598 TCTATTCTAGCCCGTCAGACTAC 58.612 47.826 0.00 0.00 0.00 2.73
35 36 4.643463 CTCTATTCTAGCCCGTCAGACTA 58.357 47.826 0.00 0.00 0.00 2.59
36 37 3.482436 CTCTATTCTAGCCCGTCAGACT 58.518 50.000 0.00 0.00 0.00 3.24
37 38 2.030628 GCTCTATTCTAGCCCGTCAGAC 60.031 54.545 0.00 0.00 33.73 3.51
38 39 2.231529 GCTCTATTCTAGCCCGTCAGA 58.768 52.381 0.00 0.00 33.73 3.27
39 40 1.957177 TGCTCTATTCTAGCCCGTCAG 59.043 52.381 0.00 0.00 39.30 3.51
40 41 2.067365 TGCTCTATTCTAGCCCGTCA 57.933 50.000 0.00 0.00 39.30 4.35
41 42 3.580731 GATTGCTCTATTCTAGCCCGTC 58.419 50.000 0.00 0.00 39.30 4.79
42 43 2.300437 GGATTGCTCTATTCTAGCCCGT 59.700 50.000 0.00 0.00 39.30 5.28
43 44 2.564947 AGGATTGCTCTATTCTAGCCCG 59.435 50.000 0.00 0.00 39.30 6.13
44 45 3.367910 CGAGGATTGCTCTATTCTAGCCC 60.368 52.174 3.58 0.00 39.30 5.19
45 46 3.257127 ACGAGGATTGCTCTATTCTAGCC 59.743 47.826 3.58 0.00 39.30 3.93
46 47 4.513198 ACGAGGATTGCTCTATTCTAGC 57.487 45.455 3.58 0.00 40.50 3.42
47 48 5.226396 CCAACGAGGATTGCTCTATTCTAG 58.774 45.833 3.58 0.00 41.22 2.43
48 49 4.039245 CCCAACGAGGATTGCTCTATTCTA 59.961 45.833 3.58 0.00 41.22 2.10
49 50 3.181461 CCCAACGAGGATTGCTCTATTCT 60.181 47.826 3.58 0.00 41.22 2.40
50 51 3.134458 CCCAACGAGGATTGCTCTATTC 58.866 50.000 3.58 0.00 41.22 1.75
51 52 2.746472 GCCCAACGAGGATTGCTCTATT 60.746 50.000 3.58 0.00 41.22 1.73
52 53 1.202698 GCCCAACGAGGATTGCTCTAT 60.203 52.381 3.58 0.00 41.22 1.98
53 54 0.178068 GCCCAACGAGGATTGCTCTA 59.822 55.000 3.58 0.00 41.22 2.43
54 55 1.078143 GCCCAACGAGGATTGCTCT 60.078 57.895 3.58 0.00 41.22 4.09
55 56 1.078143 AGCCCAACGAGGATTGCTC 60.078 57.895 0.00 0.00 41.22 4.26
56 57 1.377725 CAGCCCAACGAGGATTGCT 60.378 57.895 0.00 0.00 41.22 3.91
57 58 0.392461 TACAGCCCAACGAGGATTGC 60.392 55.000 0.00 0.00 41.22 3.56
58 59 2.009774 CTTACAGCCCAACGAGGATTG 58.990 52.381 0.00 0.00 41.22 2.67
59 60 1.679032 GCTTACAGCCCAACGAGGATT 60.679 52.381 0.00 0.00 41.22 3.01
60 61 0.107654 GCTTACAGCCCAACGAGGAT 60.108 55.000 0.00 0.00 41.22 3.24
61 62 1.295423 GCTTACAGCCCAACGAGGA 59.705 57.895 0.00 0.00 41.22 3.71
62 63 3.890674 GCTTACAGCCCAACGAGG 58.109 61.111 0.00 0.00 34.48 4.63
71 72 2.420058 AACCCATACAGGCTTACAGC 57.580 50.000 0.00 0.00 41.46 4.40
72 73 5.010282 AGAAAAACCCATACAGGCTTACAG 58.990 41.667 0.00 0.00 35.39 2.74
73 74 4.993028 AGAAAAACCCATACAGGCTTACA 58.007 39.130 0.00 0.00 35.39 2.41
74 75 5.589050 CCTAGAAAAACCCATACAGGCTTAC 59.411 44.000 0.00 0.00 35.39 2.34
75 76 5.751586 CCTAGAAAAACCCATACAGGCTTA 58.248 41.667 0.00 0.00 35.39 3.09
76 77 4.600062 CCTAGAAAAACCCATACAGGCTT 58.400 43.478 0.00 0.00 35.39 4.35
77 78 3.624959 GCCTAGAAAAACCCATACAGGCT 60.625 47.826 0.00 0.00 43.18 4.58
78 79 2.688446 GCCTAGAAAAACCCATACAGGC 59.312 50.000 0.00 0.00 40.43 4.85
79 80 3.947834 CAGCCTAGAAAAACCCATACAGG 59.052 47.826 0.00 0.00 37.03 4.00
80 81 3.947834 CCAGCCTAGAAAAACCCATACAG 59.052 47.826 0.00 0.00 0.00 2.74
81 82 3.876156 GCCAGCCTAGAAAAACCCATACA 60.876 47.826 0.00 0.00 0.00 2.29
82 83 2.688446 GCCAGCCTAGAAAAACCCATAC 59.312 50.000 0.00 0.00 0.00 2.39
83 84 2.580783 AGCCAGCCTAGAAAAACCCATA 59.419 45.455 0.00 0.00 0.00 2.74
84 85 1.359130 AGCCAGCCTAGAAAAACCCAT 59.641 47.619 0.00 0.00 0.00 4.00
85 86 0.777446 AGCCAGCCTAGAAAAACCCA 59.223 50.000 0.00 0.00 0.00 4.51
86 87 1.924731 AAGCCAGCCTAGAAAAACCC 58.075 50.000 0.00 0.00 0.00 4.11
87 88 4.336889 AAAAAGCCAGCCTAGAAAAACC 57.663 40.909 0.00 0.00 0.00 3.27
88 89 7.599171 TGTATAAAAAGCCAGCCTAGAAAAAC 58.401 34.615 0.00 0.00 0.00 2.43
89 90 7.768807 TGTATAAAAAGCCAGCCTAGAAAAA 57.231 32.000 0.00 0.00 0.00 1.94
90 91 7.450323 ACTTGTATAAAAAGCCAGCCTAGAAAA 59.550 33.333 0.00 0.00 0.00 2.29
91 92 6.946009 ACTTGTATAAAAAGCCAGCCTAGAAA 59.054 34.615 0.00 0.00 0.00 2.52
92 93 6.481643 ACTTGTATAAAAAGCCAGCCTAGAA 58.518 36.000 0.00 0.00 0.00 2.10
93 94 6.062258 ACTTGTATAAAAAGCCAGCCTAGA 57.938 37.500 0.00 0.00 0.00 2.43
94 95 6.759497 AACTTGTATAAAAAGCCAGCCTAG 57.241 37.500 0.00 0.00 0.00 3.02
95 96 7.533289 AAAACTTGTATAAAAAGCCAGCCTA 57.467 32.000 0.00 0.00 0.00 3.93
96 97 6.419484 AAAACTTGTATAAAAAGCCAGCCT 57.581 33.333 0.00 0.00 0.00 4.58
97 98 6.929049 AGAAAAACTTGTATAAAAAGCCAGCC 59.071 34.615 0.00 0.00 0.00 4.85
98 99 7.946655 AGAAAAACTTGTATAAAAAGCCAGC 57.053 32.000 0.00 0.00 0.00 4.85
99 100 9.626045 CCTAGAAAAACTTGTATAAAAAGCCAG 57.374 33.333 0.00 0.00 0.00 4.85
100 101 8.085909 GCCTAGAAAAACTTGTATAAAAAGCCA 58.914 33.333 0.00 0.00 0.00 4.75
101 102 8.085909 TGCCTAGAAAAACTTGTATAAAAAGCC 58.914 33.333 0.00 0.00 0.00 4.35
102 103 9.471084 TTGCCTAGAAAAACTTGTATAAAAAGC 57.529 29.630 0.00 0.00 0.00 3.51
104 105 9.471084 GCTTGCCTAGAAAAACTTGTATAAAAA 57.529 29.630 0.00 0.00 0.00 1.94
105 106 8.856103 AGCTTGCCTAGAAAAACTTGTATAAAA 58.144 29.630 0.00 0.00 0.00 1.52
106 107 8.404107 AGCTTGCCTAGAAAAACTTGTATAAA 57.596 30.769 0.00 0.00 0.00 1.40
107 108 7.996098 AGCTTGCCTAGAAAAACTTGTATAA 57.004 32.000 0.00 0.00 0.00 0.98
108 109 7.996098 AAGCTTGCCTAGAAAAACTTGTATA 57.004 32.000 0.00 0.00 0.00 1.47
109 110 6.901081 AAGCTTGCCTAGAAAAACTTGTAT 57.099 33.333 0.00 0.00 0.00 2.29
110 111 7.996098 ATAAGCTTGCCTAGAAAAACTTGTA 57.004 32.000 9.86 0.00 0.00 2.41
111 112 6.901081 ATAAGCTTGCCTAGAAAAACTTGT 57.099 33.333 9.86 0.00 0.00 3.16
119 120 9.856488 CGTCTTATAATATAAGCTTGCCTAGAA 57.144 33.333 9.86 0.00 0.00 2.10
120 121 9.021807 ACGTCTTATAATATAAGCTTGCCTAGA 57.978 33.333 9.86 0.00 0.00 2.43
121 122 9.640963 AACGTCTTATAATATAAGCTTGCCTAG 57.359 33.333 9.86 0.00 0.00 3.02
122 123 9.635520 GAACGTCTTATAATATAAGCTTGCCTA 57.364 33.333 9.86 0.00 0.00 3.93
123 124 8.148351 TGAACGTCTTATAATATAAGCTTGCCT 58.852 33.333 9.86 0.00 0.00 4.75
124 125 8.221766 GTGAACGTCTTATAATATAAGCTTGCC 58.778 37.037 9.86 5.37 0.00 4.52
125 126 8.221766 GGTGAACGTCTTATAATATAAGCTTGC 58.778 37.037 9.86 4.40 0.00 4.01
126 127 9.256477 TGGTGAACGTCTTATAATATAAGCTTG 57.744 33.333 9.86 8.92 0.00 4.01
127 128 9.826574 TTGGTGAACGTCTTATAATATAAGCTT 57.173 29.630 13.68 3.48 0.00 3.74
128 129 9.998106 ATTGGTGAACGTCTTATAATATAAGCT 57.002 29.630 13.68 0.87 0.00 3.74
133 134 9.706691 CCTGTATTGGTGAACGTCTTATAATAT 57.293 33.333 0.00 0.00 0.00 1.28
134 135 8.916062 TCCTGTATTGGTGAACGTCTTATAATA 58.084 33.333 0.00 0.00 0.00 0.98
135 136 7.709613 GTCCTGTATTGGTGAACGTCTTATAAT 59.290 37.037 0.00 0.00 0.00 1.28
136 137 7.037438 GTCCTGTATTGGTGAACGTCTTATAA 58.963 38.462 0.00 0.00 0.00 0.98
137 138 6.153170 TGTCCTGTATTGGTGAACGTCTTATA 59.847 38.462 0.00 0.00 0.00 0.98
138 139 5.046878 TGTCCTGTATTGGTGAACGTCTTAT 60.047 40.000 0.00 0.00 0.00 1.73
139 140 4.281435 TGTCCTGTATTGGTGAACGTCTTA 59.719 41.667 0.00 0.00 0.00 2.10
140 141 3.070446 TGTCCTGTATTGGTGAACGTCTT 59.930 43.478 0.00 0.00 0.00 3.01
141 142 2.631062 TGTCCTGTATTGGTGAACGTCT 59.369 45.455 0.00 0.00 0.00 4.18
142 143 3.034721 TGTCCTGTATTGGTGAACGTC 57.965 47.619 0.00 0.00 0.00 4.34
143 144 3.695830 ATGTCCTGTATTGGTGAACGT 57.304 42.857 0.00 0.00 0.00 3.99
144 145 5.371115 AAAATGTCCTGTATTGGTGAACG 57.629 39.130 0.00 0.00 0.00 3.95
145 146 8.952278 TGTATAAAATGTCCTGTATTGGTGAAC 58.048 33.333 0.00 0.00 0.00 3.18
146 147 9.173021 CTGTATAAAATGTCCTGTATTGGTGAA 57.827 33.333 0.00 0.00 0.00 3.18
147 148 7.773224 CCTGTATAAAATGTCCTGTATTGGTGA 59.227 37.037 0.00 0.00 0.00 4.02
148 149 7.468631 GCCTGTATAAAATGTCCTGTATTGGTG 60.469 40.741 0.00 0.00 0.00 4.17
149 150 6.546034 GCCTGTATAAAATGTCCTGTATTGGT 59.454 38.462 0.00 0.00 0.00 3.67
150 151 6.772716 AGCCTGTATAAAATGTCCTGTATTGG 59.227 38.462 0.00 0.00 0.00 3.16
151 152 7.807977 AGCCTGTATAAAATGTCCTGTATTG 57.192 36.000 0.00 0.00 0.00 1.90
177 178 9.490379 CCAGCCTAGAAAAACGTCTTATAATAT 57.510 33.333 0.00 0.00 0.00 1.28
178 179 7.440255 GCCAGCCTAGAAAAACGTCTTATAATA 59.560 37.037 0.00 0.00 0.00 0.98
179 180 6.260271 GCCAGCCTAGAAAAACGTCTTATAAT 59.740 38.462 0.00 0.00 0.00 1.28
180 181 5.583457 GCCAGCCTAGAAAAACGTCTTATAA 59.417 40.000 0.00 0.00 0.00 0.98
181 182 5.105064 AGCCAGCCTAGAAAAACGTCTTATA 60.105 40.000 0.00 0.00 0.00 0.98
182 183 3.939592 GCCAGCCTAGAAAAACGTCTTAT 59.060 43.478 0.00 0.00 0.00 1.73
183 184 3.007614 AGCCAGCCTAGAAAAACGTCTTA 59.992 43.478 0.00 0.00 0.00 2.10
184 185 2.152016 GCCAGCCTAGAAAAACGTCTT 58.848 47.619 0.00 0.00 0.00 3.01
185 186 1.348036 AGCCAGCCTAGAAAAACGTCT 59.652 47.619 0.00 0.00 0.00 4.18
186 187 1.809684 AGCCAGCCTAGAAAAACGTC 58.190 50.000 0.00 0.00 0.00 4.34
187 188 2.271944 AAGCCAGCCTAGAAAAACGT 57.728 45.000 0.00 0.00 0.00 3.99
188 189 3.643159 AAAAGCCAGCCTAGAAAAACG 57.357 42.857 0.00 0.00 0.00 3.60
189 190 6.025749 ACATAAAAGCCAGCCTAGAAAAAC 57.974 37.500 0.00 0.00 0.00 2.43
190 191 6.266558 TCAACATAAAAGCCAGCCTAGAAAAA 59.733 34.615 0.00 0.00 0.00 1.94
191 192 5.772672 TCAACATAAAAGCCAGCCTAGAAAA 59.227 36.000 0.00 0.00 0.00 2.29
192 193 5.321102 TCAACATAAAAGCCAGCCTAGAAA 58.679 37.500 0.00 0.00 0.00 2.52
193 194 4.917385 TCAACATAAAAGCCAGCCTAGAA 58.083 39.130 0.00 0.00 0.00 2.10
194 195 4.568072 TCAACATAAAAGCCAGCCTAGA 57.432 40.909 0.00 0.00 0.00 2.43
195 196 5.591877 AGATTCAACATAAAAGCCAGCCTAG 59.408 40.000 0.00 0.00 0.00 3.02
196 197 5.509498 AGATTCAACATAAAAGCCAGCCTA 58.491 37.500 0.00 0.00 0.00 3.93
197 198 4.347607 AGATTCAACATAAAAGCCAGCCT 58.652 39.130 0.00 0.00 0.00 4.58
198 199 4.725790 AGATTCAACATAAAAGCCAGCC 57.274 40.909 0.00 0.00 0.00 4.85
199 200 8.598075 CATTTTAGATTCAACATAAAAGCCAGC 58.402 33.333 0.00 0.00 33.32 4.85
200 201 9.643693 ACATTTTAGATTCAACATAAAAGCCAG 57.356 29.630 0.00 0.00 33.32 4.85
201 202 9.638239 GACATTTTAGATTCAACATAAAAGCCA 57.362 29.630 0.00 0.00 33.32 4.75
202 203 9.087424 GGACATTTTAGATTCAACATAAAAGCC 57.913 33.333 0.00 0.00 33.32 4.35
203 204 9.860898 AGGACATTTTAGATTCAACATAAAAGC 57.139 29.630 0.00 0.00 33.32 3.51
210 211 9.613428 CCAGTATAGGACATTTTAGATTCAACA 57.387 33.333 0.00 0.00 0.00 3.33
211 212 8.560374 GCCAGTATAGGACATTTTAGATTCAAC 58.440 37.037 0.00 0.00 0.00 3.18
212 213 8.494433 AGCCAGTATAGGACATTTTAGATTCAA 58.506 33.333 0.00 0.00 0.00 2.69
213 214 8.034313 AGCCAGTATAGGACATTTTAGATTCA 57.966 34.615 0.00 0.00 0.00 2.57
214 215 8.910351 AAGCCAGTATAGGACATTTTAGATTC 57.090 34.615 0.00 0.00 0.00 2.52
215 216 9.700831 AAAAGCCAGTATAGGACATTTTAGATT 57.299 29.630 0.00 0.00 0.00 2.40
216 217 9.700831 AAAAAGCCAGTATAGGACATTTTAGAT 57.299 29.630 0.00 0.00 0.00 1.98
232 233 9.830975 ATGTTGAGTTTAAAATAAAAAGCCAGT 57.169 25.926 0.00 0.00 0.00 4.00
248 249 9.498307 CGTTTTAGAAACTTGTATGTTGAGTTT 57.502 29.630 0.79 0.79 43.95 2.66
249 250 8.671028 ACGTTTTAGAAACTTGTATGTTGAGTT 58.329 29.630 2.53 0.00 35.27 3.01
250 251 8.205131 ACGTTTTAGAAACTTGTATGTTGAGT 57.795 30.769 2.53 0.00 0.00 3.41
251 252 8.548721 AGACGTTTTAGAAACTTGTATGTTGAG 58.451 33.333 0.00 0.00 0.00 3.02
252 253 8.428186 AGACGTTTTAGAAACTTGTATGTTGA 57.572 30.769 0.00 0.00 0.00 3.18
311 312 7.661437 GCTTTACTCAGATTTTTGGGGATTTTT 59.339 33.333 0.00 0.00 0.00 1.94
312 313 7.161404 GCTTTACTCAGATTTTTGGGGATTTT 58.839 34.615 0.00 0.00 0.00 1.82
313 314 6.295859 GGCTTTACTCAGATTTTTGGGGATTT 60.296 38.462 0.00 0.00 0.00 2.17
314 315 5.187772 GGCTTTACTCAGATTTTTGGGGATT 59.812 40.000 0.00 0.00 0.00 3.01
315 316 4.711846 GGCTTTACTCAGATTTTTGGGGAT 59.288 41.667 0.00 0.00 0.00 3.85
316 317 4.086457 GGCTTTACTCAGATTTTTGGGGA 58.914 43.478 0.00 0.00 0.00 4.81
317 318 4.089361 AGGCTTTACTCAGATTTTTGGGG 58.911 43.478 0.00 0.00 0.00 4.96
318 319 6.603201 TCATAGGCTTTACTCAGATTTTTGGG 59.397 38.462 0.00 0.00 0.00 4.12
319 320 7.630242 TCATAGGCTTTACTCAGATTTTTGG 57.370 36.000 0.00 0.00 0.00 3.28
320 321 9.346725 GTTTCATAGGCTTTACTCAGATTTTTG 57.653 33.333 0.00 0.00 0.00 2.44
321 322 8.523658 GGTTTCATAGGCTTTACTCAGATTTTT 58.476 33.333 0.00 0.00 0.00 1.94
322 323 7.122799 GGGTTTCATAGGCTTTACTCAGATTTT 59.877 37.037 0.00 0.00 0.00 1.82
323 324 6.603599 GGGTTTCATAGGCTTTACTCAGATTT 59.396 38.462 0.00 0.00 0.00 2.17
324 325 6.069381 AGGGTTTCATAGGCTTTACTCAGATT 60.069 38.462 0.00 0.00 0.00 2.40
325 326 5.430089 AGGGTTTCATAGGCTTTACTCAGAT 59.570 40.000 0.00 0.00 0.00 2.90
326 327 4.783227 AGGGTTTCATAGGCTTTACTCAGA 59.217 41.667 0.00 0.00 0.00 3.27
327 328 5.104259 AGGGTTTCATAGGCTTTACTCAG 57.896 43.478 0.00 0.00 0.00 3.35
328 329 5.514500 AAGGGTTTCATAGGCTTTACTCA 57.486 39.130 0.00 0.00 0.00 3.41
329 330 6.835819 AAAAGGGTTTCATAGGCTTTACTC 57.164 37.500 0.00 0.00 0.00 2.59
330 331 7.010771 AGAAAAAGGGTTTCATAGGCTTTACT 58.989 34.615 0.00 0.00 0.00 2.24
331 332 7.039993 TCAGAAAAAGGGTTTCATAGGCTTTAC 60.040 37.037 0.00 0.00 0.00 2.01
332 333 7.007723 TCAGAAAAAGGGTTTCATAGGCTTTA 58.992 34.615 0.00 0.00 0.00 1.85
333 334 5.838521 TCAGAAAAAGGGTTTCATAGGCTTT 59.161 36.000 0.00 0.00 0.00 3.51
334 335 5.393866 TCAGAAAAAGGGTTTCATAGGCTT 58.606 37.500 0.00 0.00 0.00 4.35
335 336 4.998051 TCAGAAAAAGGGTTTCATAGGCT 58.002 39.130 0.00 0.00 0.00 4.58
336 337 5.921962 ATCAGAAAAAGGGTTTCATAGGC 57.078 39.130 2.00 0.00 0.00 3.93
337 338 9.860898 CTTTAATCAGAAAAAGGGTTTCATAGG 57.139 33.333 2.00 0.00 0.00 2.57
338 339 9.358872 GCTTTAATCAGAAAAAGGGTTTCATAG 57.641 33.333 9.54 0.00 34.07 2.23
339 340 8.865090 TGCTTTAATCAGAAAAAGGGTTTCATA 58.135 29.630 9.54 0.00 34.07 2.15
340 341 7.734942 TGCTTTAATCAGAAAAAGGGTTTCAT 58.265 30.769 9.54 0.00 34.07 2.57
341 342 7.118496 TGCTTTAATCAGAAAAAGGGTTTCA 57.882 32.000 9.54 0.00 34.07 2.69
342 343 7.307396 GCTTGCTTTAATCAGAAAAAGGGTTTC 60.307 37.037 9.54 0.00 34.07 2.78
343 344 6.483307 GCTTGCTTTAATCAGAAAAAGGGTTT 59.517 34.615 9.54 0.00 34.07 3.27
344 345 5.991606 GCTTGCTTTAATCAGAAAAAGGGTT 59.008 36.000 9.54 0.00 34.07 4.11
345 346 5.305386 AGCTTGCTTTAATCAGAAAAAGGGT 59.695 36.000 9.54 0.00 34.07 4.34
346 347 5.787380 AGCTTGCTTTAATCAGAAAAAGGG 58.213 37.500 9.54 0.00 34.07 3.95
347 348 8.816640 TTTAGCTTGCTTTAATCAGAAAAAGG 57.183 30.769 0.00 0.00 34.07 3.11
353 354 8.677300 CCAGTATTTTAGCTTGCTTTAATCAGA 58.323 33.333 0.00 0.00 0.00 3.27
354 355 7.917505 CCCAGTATTTTAGCTTGCTTTAATCAG 59.082 37.037 0.00 0.00 0.00 2.90
355 356 7.613801 TCCCAGTATTTTAGCTTGCTTTAATCA 59.386 33.333 0.00 0.00 0.00 2.57
356 357 7.996385 TCCCAGTATTTTAGCTTGCTTTAATC 58.004 34.615 0.00 0.00 0.00 1.75
357 358 7.068716 CCTCCCAGTATTTTAGCTTGCTTTAAT 59.931 37.037 0.00 4.15 0.00 1.40
358 359 6.377146 CCTCCCAGTATTTTAGCTTGCTTTAA 59.623 38.462 0.00 0.00 0.00 1.52
359 360 5.885912 CCTCCCAGTATTTTAGCTTGCTTTA 59.114 40.000 0.00 0.00 0.00 1.85
360 361 4.706962 CCTCCCAGTATTTTAGCTTGCTTT 59.293 41.667 0.00 0.00 0.00 3.51
361 362 4.273318 CCTCCCAGTATTTTAGCTTGCTT 58.727 43.478 0.00 0.00 0.00 3.91
362 363 3.891049 CCTCCCAGTATTTTAGCTTGCT 58.109 45.455 0.00 0.00 0.00 3.91
363 364 2.359214 GCCTCCCAGTATTTTAGCTTGC 59.641 50.000 0.00 0.00 0.00 4.01
364 365 2.614057 CGCCTCCCAGTATTTTAGCTTG 59.386 50.000 0.00 0.00 0.00 4.01
365 366 2.504175 TCGCCTCCCAGTATTTTAGCTT 59.496 45.455 0.00 0.00 0.00 3.74
366 367 2.116238 TCGCCTCCCAGTATTTTAGCT 58.884 47.619 0.00 0.00 0.00 3.32
367 368 2.614829 TCGCCTCCCAGTATTTTAGC 57.385 50.000 0.00 0.00 0.00 3.09
368 369 4.881850 ACAAATCGCCTCCCAGTATTTTAG 59.118 41.667 0.00 0.00 0.00 1.85
369 370 4.850680 ACAAATCGCCTCCCAGTATTTTA 58.149 39.130 0.00 0.00 0.00 1.52
370 371 3.697166 ACAAATCGCCTCCCAGTATTTT 58.303 40.909 0.00 0.00 0.00 1.82
371 372 3.366052 ACAAATCGCCTCCCAGTATTT 57.634 42.857 0.00 0.00 0.00 1.40
372 373 4.196971 GTTACAAATCGCCTCCCAGTATT 58.803 43.478 0.00 0.00 0.00 1.89
373 374 3.740141 CGTTACAAATCGCCTCCCAGTAT 60.740 47.826 0.00 0.00 0.00 2.12
374 375 2.417651 CGTTACAAATCGCCTCCCAGTA 60.418 50.000 0.00 0.00 0.00 2.74
375 376 1.674817 CGTTACAAATCGCCTCCCAGT 60.675 52.381 0.00 0.00 0.00 4.00
376 377 1.006832 CGTTACAAATCGCCTCCCAG 58.993 55.000 0.00 0.00 0.00 4.45
377 378 0.322322 ACGTTACAAATCGCCTCCCA 59.678 50.000 0.00 0.00 0.00 4.37
378 379 1.004595 GACGTTACAAATCGCCTCCC 58.995 55.000 0.00 0.00 0.00 4.30
379 380 0.643820 CGACGTTACAAATCGCCTCC 59.356 55.000 0.00 0.00 0.00 4.30
380 381 0.643820 CCGACGTTACAAATCGCCTC 59.356 55.000 0.00 0.00 34.52 4.70
381 382 0.037975 ACCGACGTTACAAATCGCCT 60.038 50.000 0.00 0.00 34.52 5.52
382 383 0.094046 CACCGACGTTACAAATCGCC 59.906 55.000 0.00 0.00 34.52 5.54
383 384 0.517742 GCACCGACGTTACAAATCGC 60.518 55.000 0.00 0.00 34.52 4.58
384 385 0.785378 TGCACCGACGTTACAAATCG 59.215 50.000 0.00 0.00 35.62 3.34
385 386 1.127951 CCTGCACCGACGTTACAAATC 59.872 52.381 0.00 0.00 0.00 2.17
386 387 1.153353 CCTGCACCGACGTTACAAAT 58.847 50.000 0.00 0.00 0.00 2.32
387 388 0.881159 CCCTGCACCGACGTTACAAA 60.881 55.000 0.00 0.00 0.00 2.83
388 389 1.301087 CCCTGCACCGACGTTACAA 60.301 57.895 0.00 0.00 0.00 2.41
389 390 2.201708 TCCCTGCACCGACGTTACA 61.202 57.895 0.00 0.00 0.00 2.41
390 391 1.735559 GTCCCTGCACCGACGTTAC 60.736 63.158 0.00 0.00 0.00 2.50
391 392 2.201708 TGTCCCTGCACCGACGTTA 61.202 57.895 0.00 0.00 0.00 3.18
392 393 3.542676 TGTCCCTGCACCGACGTT 61.543 61.111 0.00 0.00 0.00 3.99
393 394 4.295119 GTGTCCCTGCACCGACGT 62.295 66.667 0.00 0.00 33.53 4.34
398 399 3.127533 GATGCGTGTCCCTGCACC 61.128 66.667 0.00 0.00 45.07 5.01
399 400 3.127533 GGATGCGTGTCCCTGCAC 61.128 66.667 0.00 0.00 45.07 4.57
405 406 1.749258 GAAAGGGGGATGCGTGTCC 60.749 63.158 0.16 0.16 37.56 4.02
406 407 1.749258 GGAAAGGGGGATGCGTGTC 60.749 63.158 0.00 0.00 0.00 3.67
407 408 2.355115 GGAAAGGGGGATGCGTGT 59.645 61.111 0.00 0.00 0.00 4.49
408 409 2.440247 GGGAAAGGGGGATGCGTG 60.440 66.667 0.00 0.00 0.00 5.34
409 410 1.800229 AAAGGGAAAGGGGGATGCGT 61.800 55.000 0.00 0.00 0.00 5.24
410 411 0.614697 AAAAGGGAAAGGGGGATGCG 60.615 55.000 0.00 0.00 0.00 4.73
411 412 0.904649 CAAAAGGGAAAGGGGGATGC 59.095 55.000 0.00 0.00 0.00 3.91
412 413 1.571955 CCAAAAGGGAAAGGGGGATG 58.428 55.000 0.00 0.00 40.01 3.51
413 414 0.252696 GCCAAAAGGGAAAGGGGGAT 60.253 55.000 0.00 0.00 40.01 3.85
414 415 1.157513 GCCAAAAGGGAAAGGGGGA 59.842 57.895 0.00 0.00 40.01 4.81
415 416 0.473694 AAGCCAAAAGGGAAAGGGGG 60.474 55.000 0.00 0.00 40.01 5.40
416 417 1.434188 AAAGCCAAAAGGGAAAGGGG 58.566 50.000 0.00 0.00 40.01 4.79
417 418 2.437651 TCAAAAGCCAAAAGGGAAAGGG 59.562 45.455 0.00 0.00 40.01 3.95
418 419 3.836365 TCAAAAGCCAAAAGGGAAAGG 57.164 42.857 0.00 0.00 40.01 3.11
419 420 6.698008 AAAATCAAAAGCCAAAAGGGAAAG 57.302 33.333 0.00 0.00 40.01 2.62
420 421 8.581253 TTAAAAATCAAAAGCCAAAAGGGAAA 57.419 26.923 0.00 0.00 40.01 3.13
421 422 8.759481 ATTAAAAATCAAAAGCCAAAAGGGAA 57.241 26.923 0.00 0.00 40.01 3.97
489 490 9.045223 CCATCGTTATCAGAAACAAAGATATGA 57.955 33.333 0.00 0.00 0.00 2.15
490 491 8.830580 ACCATCGTTATCAGAAACAAAGATATG 58.169 33.333 0.00 0.00 0.00 1.78
491 492 8.964476 ACCATCGTTATCAGAAACAAAGATAT 57.036 30.769 0.00 0.00 0.00 1.63
492 493 8.786826 AACCATCGTTATCAGAAACAAAGATA 57.213 30.769 0.00 0.00 0.00 1.98
493 494 7.687941 AACCATCGTTATCAGAAACAAAGAT 57.312 32.000 0.00 0.00 0.00 2.40
494 495 7.504924 AAACCATCGTTATCAGAAACAAAGA 57.495 32.000 0.00 0.00 0.00 2.52
495 496 7.860373 TGAAAACCATCGTTATCAGAAACAAAG 59.140 33.333 0.00 0.00 0.00 2.77
496 497 7.708051 TGAAAACCATCGTTATCAGAAACAAA 58.292 30.769 0.00 0.00 0.00 2.83
497 498 7.265647 TGAAAACCATCGTTATCAGAAACAA 57.734 32.000 0.00 0.00 0.00 2.83
498 499 6.869315 TGAAAACCATCGTTATCAGAAACA 57.131 33.333 0.00 0.00 0.00 2.83
499 500 8.638565 CATTTGAAAACCATCGTTATCAGAAAC 58.361 33.333 0.00 0.00 0.00 2.78
500 501 8.356657 ACATTTGAAAACCATCGTTATCAGAAA 58.643 29.630 0.00 0.00 0.00 2.52
501 502 7.807433 CACATTTGAAAACCATCGTTATCAGAA 59.193 33.333 0.00 0.00 0.00 3.02
502 503 7.304735 CACATTTGAAAACCATCGTTATCAGA 58.695 34.615 0.00 0.00 0.00 3.27
503 504 6.527722 CCACATTTGAAAACCATCGTTATCAG 59.472 38.462 0.00 0.00 0.00 2.90
504 505 6.015856 ACCACATTTGAAAACCATCGTTATCA 60.016 34.615 0.00 0.00 0.00 2.15
505 506 6.386654 ACCACATTTGAAAACCATCGTTATC 58.613 36.000 0.00 0.00 0.00 1.75
506 507 6.339587 ACCACATTTGAAAACCATCGTTAT 57.660 33.333 0.00 0.00 0.00 1.89
507 508 5.278561 GGACCACATTTGAAAACCATCGTTA 60.279 40.000 0.00 0.00 0.00 3.18
508 509 4.500716 GGACCACATTTGAAAACCATCGTT 60.501 41.667 0.00 0.00 0.00 3.85
509 510 3.005367 GGACCACATTTGAAAACCATCGT 59.995 43.478 0.00 0.00 0.00 3.73
510 511 3.005261 TGGACCACATTTGAAAACCATCG 59.995 43.478 0.00 0.00 0.00 3.84
511 512 4.599047 TGGACCACATTTGAAAACCATC 57.401 40.909 0.00 0.00 0.00 3.51
587 588 9.688091 TCAGTTACTGTAGATGTAATTCTCTCT 57.312 33.333 12.41 0.00 33.29 3.10
712 713 1.300697 GGCCGATACGAGCCGAAAT 60.301 57.895 1.50 0.00 39.87 2.17
782 783 3.508762 CCGCTCGCTTCTTTAAGTTCTA 58.491 45.455 0.00 0.00 34.99 2.10
802 803 1.352056 GCAAAATAGCTCGGTCGCC 59.648 57.895 0.00 0.00 0.00 5.54
1019 1023 0.252558 GGGTGGTGGGTCTCCTTCTA 60.253 60.000 0.00 0.00 0.00 2.10
1134 1167 5.048013 GCAGAACAAAAACCCTAGCAGTAAT 60.048 40.000 0.00 0.00 0.00 1.89
1319 1352 3.104512 CACAGTAAGTGTATCCCCCTCA 58.895 50.000 0.00 0.00 43.40 3.86
1370 1403 3.454858 TCTTCCCTTCACTTCATAGCCT 58.545 45.455 0.00 0.00 0.00 4.58
1876 4318 6.723298 ATTTGGAAATGTTACCTGTGACAA 57.277 33.333 0.00 0.00 32.76 3.18
1899 4341 5.529581 TGGATGTATCGAGCACTGAAATA 57.470 39.130 0.00 0.00 0.00 1.40
1927 4369 6.515272 AGCACTGAAATATTAACCACAAGG 57.485 37.500 0.00 0.00 42.21 3.61
1928 4370 6.092122 TCGAGCACTGAAATATTAACCACAAG 59.908 38.462 0.00 0.00 0.00 3.16
1929 4371 5.935206 TCGAGCACTGAAATATTAACCACAA 59.065 36.000 0.00 0.00 0.00 3.33
1930 4372 5.483811 TCGAGCACTGAAATATTAACCACA 58.516 37.500 0.00 0.00 0.00 4.17
1931 4373 6.604735 ATCGAGCACTGAAATATTAACCAC 57.395 37.500 0.00 0.00 0.00 4.16
1932 4374 7.223971 GTGTATCGAGCACTGAAATATTAACCA 59.776 37.037 13.58 0.00 34.30 3.67
1933 4375 7.307219 GGTGTATCGAGCACTGAAATATTAACC 60.307 40.741 18.31 3.90 37.07 2.85
1934 4376 7.307219 GGGTGTATCGAGCACTGAAATATTAAC 60.307 40.741 18.31 2.47 37.07 2.01
1935 4377 6.704493 GGGTGTATCGAGCACTGAAATATTAA 59.296 38.462 18.31 0.00 37.07 1.40
1939 4381 3.449377 TGGGTGTATCGAGCACTGAAATA 59.551 43.478 18.31 2.10 37.07 1.40
1958 4400 6.976934 ATATTAGCCACAAGGTAAAATGGG 57.023 37.500 0.00 0.00 41.55 4.00
1967 4409 4.641989 AGCACTGAAATATTAGCCACAAGG 59.358 41.667 0.00 0.00 38.23 3.61
1996 4438 5.913137 TTAGCCACAAGGTAAAATGGATG 57.087 39.130 0.00 0.00 35.53 3.51
2007 4449 3.316308 GCACTGGAATATTAGCCACAAGG 59.684 47.826 0.00 0.00 38.23 3.61
2008 4450 4.202441 AGCACTGGAATATTAGCCACAAG 58.798 43.478 0.00 0.00 0.00 3.16
2009 4451 4.235079 AGCACTGGAATATTAGCCACAA 57.765 40.909 0.00 0.00 0.00 3.33
2010 4452 3.931907 AGCACTGGAATATTAGCCACA 57.068 42.857 0.00 0.00 0.00 4.17
2011 4453 4.199310 TCAAGCACTGGAATATTAGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
2012 4454 4.502105 TCAAGCACTGGAATATTAGCCA 57.498 40.909 0.00 0.00 0.00 4.75
2013 4455 5.997746 TGTATCAAGCACTGGAATATTAGCC 59.002 40.000 0.00 0.00 0.00 3.93
2014 4456 6.073003 GGTGTATCAAGCACTGGAATATTAGC 60.073 42.308 0.00 0.00 37.07 3.09
2015 4457 6.428159 GGGTGTATCAAGCACTGGAATATTAG 59.572 42.308 0.00 0.00 37.07 1.73
2016 4458 6.126623 TGGGTGTATCAAGCACTGGAATATTA 60.127 38.462 0.00 0.00 37.07 0.98
2017 4459 5.133221 GGGTGTATCAAGCACTGGAATATT 58.867 41.667 0.00 0.00 37.07 1.28
2018 4460 4.165950 TGGGTGTATCAAGCACTGGAATAT 59.834 41.667 0.00 0.00 37.07 1.28
2019 4461 3.521531 TGGGTGTATCAAGCACTGGAATA 59.478 43.478 0.00 0.00 37.07 1.75
2020 4462 2.308570 TGGGTGTATCAAGCACTGGAAT 59.691 45.455 0.00 0.00 37.07 3.01
2021 4463 1.702401 TGGGTGTATCAAGCACTGGAA 59.298 47.619 0.00 0.00 37.07 3.53
2022 4464 1.357137 TGGGTGTATCAAGCACTGGA 58.643 50.000 0.00 0.00 37.07 3.86
2023 4465 2.425143 ATGGGTGTATCAAGCACTGG 57.575 50.000 0.00 0.00 37.07 4.00
2024 4466 3.758023 TGAAATGGGTGTATCAAGCACTG 59.242 43.478 0.00 0.00 37.07 3.66
2025 4467 3.758554 GTGAAATGGGTGTATCAAGCACT 59.241 43.478 0.00 0.00 37.07 4.40
2026 4468 3.119495 GGTGAAATGGGTGTATCAAGCAC 60.119 47.826 0.00 0.00 36.22 4.40
2027 4469 3.088532 GGTGAAATGGGTGTATCAAGCA 58.911 45.455 0.00 0.00 0.00 3.91
2028 4470 3.356290 AGGTGAAATGGGTGTATCAAGC 58.644 45.455 0.00 0.00 0.00 4.01
2029 4471 4.766891 ACAAGGTGAAATGGGTGTATCAAG 59.233 41.667 0.00 0.00 0.00 3.02
2030 4472 4.522405 CACAAGGTGAAATGGGTGTATCAA 59.478 41.667 0.00 0.00 35.23 2.57
2031 4473 4.078537 CACAAGGTGAAATGGGTGTATCA 58.921 43.478 0.00 0.00 35.23 2.15
2032 4474 3.443681 CCACAAGGTGAAATGGGTGTATC 59.556 47.826 0.00 0.00 35.23 2.24
2033 4475 3.430453 CCACAAGGTGAAATGGGTGTAT 58.570 45.455 0.00 0.00 35.23 2.29
2034 4476 2.870175 CCACAAGGTGAAATGGGTGTA 58.130 47.619 0.00 0.00 35.23 2.90
2035 4477 1.703411 CCACAAGGTGAAATGGGTGT 58.297 50.000 0.00 0.00 35.23 4.16
2036 4478 0.318120 GCCACAAGGTGAAATGGGTG 59.682 55.000 0.00 0.00 35.23 4.61
2037 4479 0.188342 AGCCACAAGGTGAAATGGGT 59.812 50.000 0.00 0.00 38.11 4.51
2038 4480 2.214376 TAGCCACAAGGTGAAATGGG 57.786 50.000 0.00 0.00 35.23 4.00
2039 4481 6.469782 AATATTAGCCACAAGGTGAAATGG 57.530 37.500 0.00 0.00 35.23 3.16
2040 4482 7.546358 TGAAATATTAGCCACAAGGTGAAATG 58.454 34.615 0.00 0.00 35.23 2.32
2041 4483 7.397192 ACTGAAATATTAGCCACAAGGTGAAAT 59.603 33.333 0.00 0.00 35.23 2.17
2042 4484 6.719370 ACTGAAATATTAGCCACAAGGTGAAA 59.281 34.615 0.00 0.00 35.23 2.69
2043 4485 6.150976 CACTGAAATATTAGCCACAAGGTGAA 59.849 38.462 0.00 0.00 35.23 3.18
2044 4486 5.647658 CACTGAAATATTAGCCACAAGGTGA 59.352 40.000 0.00 0.00 35.23 4.02
2045 4487 5.677091 GCACTGAAATATTAGCCACAAGGTG 60.677 44.000 0.00 0.00 37.19 4.00
2046 4488 4.399303 GCACTGAAATATTAGCCACAAGGT 59.601 41.667 0.00 0.00 37.19 3.50
2047 4489 4.641989 AGCACTGAAATATTAGCCACAAGG 59.358 41.667 0.00 0.00 38.23 3.61
2048 4490 5.503031 CGAGCACTGAAATATTAGCCACAAG 60.503 44.000 0.00 0.00 0.00 3.16
2049 4491 4.332543 CGAGCACTGAAATATTAGCCACAA 59.667 41.667 0.00 0.00 0.00 3.33
2050 4492 3.871006 CGAGCACTGAAATATTAGCCACA 59.129 43.478 0.00 0.00 0.00 4.17
2051 4493 4.119862 TCGAGCACTGAAATATTAGCCAC 58.880 43.478 0.00 0.00 0.00 5.01
2052 4494 4.400529 TCGAGCACTGAAATATTAGCCA 57.599 40.909 0.00 0.00 0.00 4.75
2053 4495 5.926542 TGTATCGAGCACTGAAATATTAGCC 59.073 40.000 0.00 0.00 0.00 3.93
2054 4496 6.128795 GGTGTATCGAGCACTGAAATATTAGC 60.129 42.308 18.31 0.00 37.07 3.09
2055 4497 6.366332 GGGTGTATCGAGCACTGAAATATTAG 59.634 42.308 18.31 0.00 37.07 1.73
2056 4498 6.183360 TGGGTGTATCGAGCACTGAAATATTA 60.183 38.462 18.31 0.00 37.07 0.98
2091 4573 7.720957 TGTATTGAGCACTGAAATATTAGCCAT 59.279 33.333 0.00 0.00 0.00 4.40
2112 4594 5.957774 AGCCACAAGGTAAAATGGATGTATT 59.042 36.000 0.00 0.00 37.19 1.89
2161 4723 8.520351 ACTGAAATATTAGCCACAAGGTAAAAC 58.480 33.333 0.00 0.00 41.55 2.43
2192 4994 7.238486 TGCAACAAGGTAAAATGGATGTATT 57.762 32.000 0.00 0.00 0.00 1.89
2405 5265 8.773645 TGTAACAGTAGTGAAACATGAGAAATG 58.226 33.333 4.09 0.00 41.43 2.32
2489 5349 4.818546 GGCATTGCATCTCTAGCTTCTTTA 59.181 41.667 11.39 0.00 0.00 1.85
2585 5445 1.708341 AAGGTTCATTGGCTTGCTGT 58.292 45.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.