Multiple sequence alignment - TraesCS1B01G305200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G305200 chr1B 100.000 6111 0 0 1 6111 527852376 527846266 0.000000e+00 11285.0
1 TraesCS1B01G305200 chr1B 86.957 161 16 4 1 160 411565372 411565528 6.300000e-40 176.0
2 TraesCS1B01G305200 chr1A 95.614 3944 133 23 2182 6111 491151675 491147758 0.000000e+00 6288.0
3 TraesCS1B01G305200 chr1A 87.301 1504 83 40 187 1624 491153713 491152252 0.000000e+00 1620.0
4 TraesCS1B01G305200 chr1A 89.748 634 47 10 5483 6111 386379938 386379318 0.000000e+00 795.0
5 TraesCS1B01G305200 chr1A 94.831 445 23 0 1741 2185 491152165 491151721 0.000000e+00 695.0
6 TraesCS1B01G305200 chr1A 93.220 118 6 2 1 117 116896241 116896125 8.140000e-39 172.0
7 TraesCS1B01G305200 chr1A 95.652 46 2 0 5437 5482 386380005 386379960 2.360000e-09 75.0
8 TraesCS1B01G305200 chr1D 95.597 3248 120 14 2182 5420 394255176 394258409 0.000000e+00 5184.0
9 TraesCS1B01G305200 chr1D 97.050 678 19 1 5434 6111 394258394 394259070 0.000000e+00 1140.0
10 TraesCS1B01G305200 chr1D 88.696 805 39 10 1408 2185 394254353 394255132 0.000000e+00 935.0
11 TraesCS1B01G305200 chr1D 90.179 672 36 21 707 1370 394253694 394254343 0.000000e+00 848.0
12 TraesCS1B01G305200 chr1D 86.727 550 21 18 187 701 394253127 394253659 1.150000e-156 564.0
13 TraesCS1B01G305200 chr1D 92.373 118 7 2 1 117 179041024 179041140 3.790000e-37 167.0
14 TraesCS1B01G305200 chr1D 89.062 64 6 1 104 167 462261798 462261736 1.830000e-10 78.7
15 TraesCS1B01G305200 chr4A 87.406 794 70 16 2288 3069 217351002 217351777 0.000000e+00 885.0
16 TraesCS1B01G305200 chr4A 93.333 60 3 1 104 163 600685310 600685252 3.030000e-13 87.9
17 TraesCS1B01G305200 chr3B 87.150 786 73 14 2295 3069 462591135 462590367 0.000000e+00 867.0
18 TraesCS1B01G305200 chr3B 87.400 500 55 8 1695 2190 462592161 462591666 8.890000e-158 568.0
19 TraesCS1B01G305200 chr7A 86.272 794 71 17 2288 3069 493603287 493604054 0.000000e+00 828.0
20 TraesCS1B01G305200 chr7A 87.952 498 53 7 1695 2189 493602615 493603108 1.140000e-161 580.0
21 TraesCS1B01G305200 chr4B 85.859 792 84 12 2288 3068 158107281 158108055 0.000000e+00 817.0
22 TraesCS1B01G305200 chr2D 86.003 793 68 19 2288 3069 127774828 127774068 0.000000e+00 809.0
23 TraesCS1B01G305200 chr2D 88.273 631 55 10 5483 6111 640611407 640612020 0.000000e+00 737.0
24 TraesCS1B01G305200 chr2D 88.153 498 52 7 1695 2189 127775500 127775007 2.450000e-163 586.0
25 TraesCS1B01G305200 chr2D 93.220 118 6 2 1 117 123607953 123608069 8.140000e-39 172.0
26 TraesCS1B01G305200 chr2D 92.373 118 7 2 1 117 373035910 373035794 3.790000e-37 167.0
27 TraesCS1B01G305200 chr2D 91.667 60 4 1 104 163 14033350 14033408 1.410000e-11 82.4
28 TraesCS1B01G305200 chr2D 91.667 60 4 1 104 163 581409534 581409476 1.410000e-11 82.4
29 TraesCS1B01G305200 chr7B 88.606 667 55 14 2415 3069 434769968 434769311 0.000000e+00 791.0
30 TraesCS1B01G305200 chr7B 82.386 721 87 15 1493 2189 434770809 434770105 5.270000e-165 592.0
31 TraesCS1B01G305200 chr5B 83.906 727 70 21 1493 2189 239307713 239307004 0.000000e+00 651.0
32 TraesCS1B01G305200 chr5B 85.794 359 43 6 1063 1416 239308088 239307733 2.080000e-99 374.0
33 TraesCS1B01G305200 chrUn 88.337 523 41 7 2288 2809 29337214 29337717 1.460000e-170 610.0
34 TraesCS1B01G305200 chr7D 87.776 499 53 8 1695 2189 636678939 636679433 1.480000e-160 577.0
35 TraesCS1B01G305200 chr7D 91.667 60 4 1 104 163 38661727 38661669 1.410000e-11 82.4
36 TraesCS1B01G305200 chr6A 87.375 499 55 8 1695 2189 321276460 321275966 3.200000e-157 566.0
37 TraesCS1B01G305200 chr6A 87.359 443 39 11 2637 3069 321275358 321274923 5.500000e-135 492.0
38 TraesCS1B01G305200 chr6A 88.068 352 30 3 2288 2639 321275803 321275464 2.050000e-109 407.0
39 TraesCS1B01G305200 chr2B 93.103 116 6 2 1 115 179256820 179256706 1.050000e-37 169.0
40 TraesCS1B01G305200 chr5D 92.373 118 7 2 1 117 261309302 261309418 3.790000e-37 167.0
41 TraesCS1B01G305200 chr5D 91.667 60 4 1 104 163 395951370 395951428 1.410000e-11 82.4
42 TraesCS1B01G305200 chr3D 92.373 118 7 2 1 117 167922152 167922268 3.790000e-37 167.0
43 TraesCS1B01G305200 chr3D 92.373 118 7 2 1 117 303528284 303528400 3.790000e-37 167.0
44 TraesCS1B01G305200 chr3D 89.394 66 5 2 106 169 228000241 228000176 1.410000e-11 82.4
45 TraesCS1B01G305200 chr3D 91.667 60 4 1 104 163 288675471 288675529 1.410000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G305200 chr1B 527846266 527852376 6110 True 11285.000000 11285 100.000000 1 6111 1 chr1B.!!$R1 6110
1 TraesCS1B01G305200 chr1A 491147758 491153713 5955 True 2867.666667 6288 92.582000 187 6111 3 chr1A.!!$R3 5924
2 TraesCS1B01G305200 chr1A 386379318 386380005 687 True 435.000000 795 92.700000 5437 6111 2 chr1A.!!$R2 674
3 TraesCS1B01G305200 chr1D 394253127 394259070 5943 False 1734.200000 5184 91.649800 187 6111 5 chr1D.!!$F2 5924
4 TraesCS1B01G305200 chr4A 217351002 217351777 775 False 885.000000 885 87.406000 2288 3069 1 chr4A.!!$F1 781
5 TraesCS1B01G305200 chr3B 462590367 462592161 1794 True 717.500000 867 87.275000 1695 3069 2 chr3B.!!$R1 1374
6 TraesCS1B01G305200 chr7A 493602615 493604054 1439 False 704.000000 828 87.112000 1695 3069 2 chr7A.!!$F1 1374
7 TraesCS1B01G305200 chr4B 158107281 158108055 774 False 817.000000 817 85.859000 2288 3068 1 chr4B.!!$F1 780
8 TraesCS1B01G305200 chr2D 640611407 640612020 613 False 737.000000 737 88.273000 5483 6111 1 chr2D.!!$F3 628
9 TraesCS1B01G305200 chr2D 127774068 127775500 1432 True 697.500000 809 87.078000 1695 3069 2 chr2D.!!$R3 1374
10 TraesCS1B01G305200 chr7B 434769311 434770809 1498 True 691.500000 791 85.496000 1493 3069 2 chr7B.!!$R1 1576
11 TraesCS1B01G305200 chr5B 239307004 239308088 1084 True 512.500000 651 84.850000 1063 2189 2 chr5B.!!$R1 1126
12 TraesCS1B01G305200 chrUn 29337214 29337717 503 False 610.000000 610 88.337000 2288 2809 1 chrUn.!!$F1 521
13 TraesCS1B01G305200 chr6A 321274923 321276460 1537 True 488.333333 566 87.600667 1695 3069 3 chr6A.!!$R1 1374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.036388 TTTCATCTCACGCCCTCCAC 60.036 55.000 0.00 0.00 0.00 4.02 F
361 374 0.038890 TCAATCACGCCCCAATTGGA 59.961 50.000 26.60 4.77 37.39 3.53 F
927 1025 0.179081 GACCGGAATTAGGAGCGCTT 60.179 55.000 13.26 0.00 0.00 4.68 F
928 1026 0.462047 ACCGGAATTAGGAGCGCTTG 60.462 55.000 13.26 0.00 0.00 4.01 F
2367 2946 0.480252 AGGCCTTCACCAAGAAAGCT 59.520 50.000 0.00 0.00 42.19 3.74 F
3088 3798 0.248289 TTCCGTAGCAGTGTAAGGCC 59.752 55.000 0.00 0.00 0.00 5.19 F
3658 4369 2.044551 CTGCTCCTTCCCTTGCCC 60.045 66.667 0.00 0.00 0.00 5.36 F
4867 5581 1.069090 GATTCTATGGGCGCACCGA 59.931 57.895 7.46 2.32 44.64 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1778 0.106015 AGGGCCCTATTTCCACATGC 60.106 55.000 27.42 0.0 0.00 4.06 R
1646 1779 2.459555 AAGGGCCCTATTTCCACATG 57.540 50.000 28.96 0.0 0.00 3.21 R
2606 3196 0.690762 ACGCACATAAACTCCAGGGT 59.309 50.000 0.00 0.0 0.00 4.34 R
2756 3456 3.510531 ACCTGAGACTCACACAGACTA 57.489 47.619 0.00 0.0 39.04 2.59 R
3689 4400 0.611896 GCCCTTGCTCCCTTTGCTTA 60.612 55.000 0.00 0.0 33.53 3.09 R
4705 5419 0.652592 CATCGCCGAAACTGATGTCC 59.347 55.000 0.00 0.0 35.81 4.02 R
4912 5626 0.835941 CCAAGGGGACTGATCTGAGG 59.164 60.000 6.60 0.0 42.68 3.86 R
5684 6429 2.123632 AGGAAGGCCCTGAGCAGA 59.876 61.111 0.00 0.0 45.61 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.761575 AATGCACCTTAAAATATGAACTTGTG 57.238 30.769 0.00 0.00 0.00 3.33
27 28 7.517614 TGCACCTTAAAATATGAACTTGTGA 57.482 32.000 0.00 0.00 0.00 3.58
28 29 8.121305 TGCACCTTAAAATATGAACTTGTGAT 57.879 30.769 0.00 0.00 0.00 3.06
29 30 8.028354 TGCACCTTAAAATATGAACTTGTGATG 58.972 33.333 0.00 0.00 0.00 3.07
30 31 7.489113 GCACCTTAAAATATGAACTTGTGATGG 59.511 37.037 0.00 0.00 0.00 3.51
31 32 7.975616 CACCTTAAAATATGAACTTGTGATGGG 59.024 37.037 0.00 0.00 0.00 4.00
32 33 7.124147 ACCTTAAAATATGAACTTGTGATGGGG 59.876 37.037 0.00 0.00 0.00 4.96
33 34 7.341769 CCTTAAAATATGAACTTGTGATGGGGA 59.658 37.037 0.00 0.00 0.00 4.81
34 35 8.657387 TTAAAATATGAACTTGTGATGGGGAA 57.343 30.769 0.00 0.00 0.00 3.97
35 36 6.530019 AAATATGAACTTGTGATGGGGAAC 57.470 37.500 0.00 0.00 0.00 3.62
36 37 3.524095 ATGAACTTGTGATGGGGAACA 57.476 42.857 0.00 0.00 0.00 3.18
37 38 3.304911 TGAACTTGTGATGGGGAACAA 57.695 42.857 0.00 0.00 0.00 2.83
38 39 2.955660 TGAACTTGTGATGGGGAACAAC 59.044 45.455 0.00 0.00 0.00 3.32
39 40 1.995376 ACTTGTGATGGGGAACAACC 58.005 50.000 0.00 0.00 38.08 3.77
40 41 1.216678 ACTTGTGATGGGGAACAACCA 59.783 47.619 0.00 0.00 43.22 3.67
41 42 2.315176 CTTGTGATGGGGAACAACCAA 58.685 47.619 0.00 0.00 42.17 3.67
42 43 2.461300 TGTGATGGGGAACAACCAAA 57.539 45.000 0.00 0.00 42.17 3.28
43 44 2.969628 TGTGATGGGGAACAACCAAAT 58.030 42.857 0.00 0.00 42.17 2.32
44 45 3.312890 TGTGATGGGGAACAACCAAATT 58.687 40.909 0.00 0.00 42.17 1.82
45 46 3.070734 TGTGATGGGGAACAACCAAATTG 59.929 43.478 0.00 0.00 42.17 2.32
46 47 3.323403 GTGATGGGGAACAACCAAATTGA 59.677 43.478 0.00 0.00 42.17 2.57
47 48 3.577848 TGATGGGGAACAACCAAATTGAG 59.422 43.478 0.00 0.00 42.17 3.02
48 49 1.691434 TGGGGAACAACCAAATTGAGC 59.309 47.619 0.00 0.00 41.23 4.26
49 50 1.001974 GGGGAACAACCAAATTGAGCC 59.998 52.381 0.00 0.00 41.23 4.70
50 51 1.970640 GGGAACAACCAAATTGAGCCT 59.029 47.619 0.00 0.00 41.23 4.58
51 52 2.368548 GGGAACAACCAAATTGAGCCTT 59.631 45.455 0.00 0.00 41.23 4.35
52 53 3.576550 GGGAACAACCAAATTGAGCCTTA 59.423 43.478 0.00 0.00 41.23 2.69
53 54 4.222810 GGGAACAACCAAATTGAGCCTTAT 59.777 41.667 0.00 0.00 41.23 1.73
54 55 5.420739 GGGAACAACCAAATTGAGCCTTATA 59.579 40.000 0.00 0.00 41.23 0.98
55 56 6.071051 GGGAACAACCAAATTGAGCCTTATAA 60.071 38.462 0.00 0.00 41.23 0.98
56 57 7.382898 GGAACAACCAAATTGAGCCTTATAAA 58.617 34.615 0.00 0.00 41.23 1.40
57 58 7.875554 GGAACAACCAAATTGAGCCTTATAAAA 59.124 33.333 0.00 0.00 41.23 1.52
58 59 9.435688 GAACAACCAAATTGAGCCTTATAAAAT 57.564 29.630 0.00 0.00 41.23 1.82
59 60 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
60 61 7.823799 ACAACCAAATTGAGCCTTATAAAATGG 59.176 33.333 0.00 0.00 41.23 3.16
61 62 7.732222 ACCAAATTGAGCCTTATAAAATGGA 57.268 32.000 0.00 0.00 0.00 3.41
62 63 8.144862 ACCAAATTGAGCCTTATAAAATGGAA 57.855 30.769 0.00 0.00 0.00 3.53
63 64 8.601546 ACCAAATTGAGCCTTATAAAATGGAAA 58.398 29.630 0.00 0.00 0.00 3.13
64 65 8.882736 CCAAATTGAGCCTTATAAAATGGAAAC 58.117 33.333 0.00 0.00 0.00 2.78
84 85 8.730680 TGGAAACACTAAGATTTTGAGATAAGC 58.269 33.333 0.00 0.00 33.40 3.09
85 86 8.184848 GGAAACACTAAGATTTTGAGATAAGCC 58.815 37.037 0.00 0.00 0.00 4.35
86 87 8.870075 AAACACTAAGATTTTGAGATAAGCCT 57.130 30.769 0.00 0.00 0.00 4.58
87 88 8.870075 AACACTAAGATTTTGAGATAAGCCTT 57.130 30.769 0.00 0.00 0.00 4.35
88 89 9.959721 AACACTAAGATTTTGAGATAAGCCTTA 57.040 29.630 0.00 0.00 0.00 2.69
95 96 9.057089 AGATTTTGAGATAAGCCTTATAAACCG 57.943 33.333 0.00 0.00 0.00 4.44
96 97 7.562454 TTTTGAGATAAGCCTTATAAACCGG 57.438 36.000 0.00 0.00 0.00 5.28
97 98 6.488769 TTGAGATAAGCCTTATAAACCGGA 57.511 37.500 9.46 0.00 0.00 5.14
98 99 6.488769 TGAGATAAGCCTTATAAACCGGAA 57.511 37.500 9.46 0.00 0.00 4.30
99 100 6.891388 TGAGATAAGCCTTATAAACCGGAAA 58.109 36.000 9.46 0.00 0.00 3.13
100 101 6.990349 TGAGATAAGCCTTATAAACCGGAAAG 59.010 38.462 9.46 3.38 0.00 2.62
102 103 4.579647 AAGCCTTATAAACCGGAAAGGA 57.420 40.909 9.46 0.00 45.00 3.36
103 104 4.579647 AGCCTTATAAACCGGAAAGGAA 57.420 40.909 9.46 0.00 45.00 3.36
104 105 4.524053 AGCCTTATAAACCGGAAAGGAAG 58.476 43.478 9.46 5.81 45.00 3.46
105 106 4.226620 AGCCTTATAAACCGGAAAGGAAGA 59.773 41.667 9.46 0.00 45.00 2.87
106 107 4.575236 GCCTTATAAACCGGAAAGGAAGAG 59.425 45.833 9.46 1.99 45.00 2.85
107 108 5.628433 GCCTTATAAACCGGAAAGGAAGAGA 60.628 44.000 9.46 0.00 45.00 3.10
108 109 6.592870 CCTTATAAACCGGAAAGGAAGAGAT 58.407 40.000 9.46 0.00 45.00 2.75
109 110 7.688574 GCCTTATAAACCGGAAAGGAAGAGATA 60.689 40.741 9.46 0.00 45.00 1.98
110 111 7.873505 CCTTATAAACCGGAAAGGAAGAGATAG 59.126 40.741 9.46 0.00 45.00 2.08
111 112 6.809976 ATAAACCGGAAAGGAAGAGATAGT 57.190 37.500 9.46 0.00 45.00 2.12
112 113 7.909485 ATAAACCGGAAAGGAAGAGATAGTA 57.091 36.000 9.46 0.00 45.00 1.82
113 114 6.616237 AAACCGGAAAGGAAGAGATAGTAA 57.384 37.500 9.46 0.00 45.00 2.24
114 115 5.595257 ACCGGAAAGGAAGAGATAGTAAC 57.405 43.478 9.46 0.00 45.00 2.50
115 116 5.021458 ACCGGAAAGGAAGAGATAGTAACA 58.979 41.667 9.46 0.00 45.00 2.41
116 117 5.661759 ACCGGAAAGGAAGAGATAGTAACAT 59.338 40.000 9.46 0.00 45.00 2.71
117 118 5.986135 CCGGAAAGGAAGAGATAGTAACATG 59.014 44.000 0.00 0.00 45.00 3.21
118 119 5.986135 CGGAAAGGAAGAGATAGTAACATGG 59.014 44.000 0.00 0.00 0.00 3.66
119 120 6.292150 GGAAAGGAAGAGATAGTAACATGGG 58.708 44.000 0.00 0.00 0.00 4.00
120 121 4.965200 AGGAAGAGATAGTAACATGGGC 57.035 45.455 0.00 0.00 0.00 5.36
121 122 4.298626 AGGAAGAGATAGTAACATGGGCA 58.701 43.478 0.00 0.00 0.00 5.36
122 123 4.910304 AGGAAGAGATAGTAACATGGGCAT 59.090 41.667 0.00 0.00 0.00 4.40
123 124 6.084738 AGGAAGAGATAGTAACATGGGCATA 58.915 40.000 0.00 0.00 0.00 3.14
124 125 6.732862 AGGAAGAGATAGTAACATGGGCATAT 59.267 38.462 0.00 0.00 0.00 1.78
125 126 7.238514 AGGAAGAGATAGTAACATGGGCATATT 59.761 37.037 0.00 0.00 0.00 1.28
126 127 8.540388 GGAAGAGATAGTAACATGGGCATATTA 58.460 37.037 0.00 0.00 0.00 0.98
127 128 9.372369 GAAGAGATAGTAACATGGGCATATTAC 57.628 37.037 0.00 0.00 32.41 1.89
128 129 8.671987 AGAGATAGTAACATGGGCATATTACT 57.328 34.615 0.00 0.00 42.00 2.24
129 130 9.769677 AGAGATAGTAACATGGGCATATTACTA 57.230 33.333 11.56 11.56 43.35 1.82
135 136 9.640952 AGTAACATGGGCATATTACTATTTTGT 57.359 29.630 0.00 0.00 38.74 2.83
136 137 9.677567 GTAACATGGGCATATTACTATTTTGTG 57.322 33.333 0.00 0.00 30.30 3.33
137 138 7.896383 ACATGGGCATATTACTATTTTGTGT 57.104 32.000 0.00 0.00 0.00 3.72
138 139 8.305046 ACATGGGCATATTACTATTTTGTGTT 57.695 30.769 0.00 0.00 0.00 3.32
139 140 9.415008 ACATGGGCATATTACTATTTTGTGTTA 57.585 29.630 0.00 0.00 0.00 2.41
140 141 9.677567 CATGGGCATATTACTATTTTGTGTTAC 57.322 33.333 0.00 0.00 0.00 2.50
141 142 9.640952 ATGGGCATATTACTATTTTGTGTTACT 57.359 29.630 0.00 0.00 0.00 2.24
150 151 9.796180 TTACTATTTTGTGTTACTACCCATTGT 57.204 29.630 0.00 0.00 0.00 2.71
151 152 8.106247 ACTATTTTGTGTTACTACCCATTGTG 57.894 34.615 0.00 0.00 0.00 3.33
152 153 5.776173 TTTTGTGTTACTACCCATTGTGG 57.224 39.130 0.00 0.00 37.25 4.17
153 154 2.785562 TGTGTTACTACCCATTGTGGC 58.214 47.619 0.00 0.00 35.79 5.01
154 155 2.373836 TGTGTTACTACCCATTGTGGCT 59.626 45.455 0.00 0.00 35.79 4.75
155 156 3.583526 TGTGTTACTACCCATTGTGGCTA 59.416 43.478 0.00 0.00 35.79 3.93
156 157 4.189231 GTGTTACTACCCATTGTGGCTAG 58.811 47.826 0.00 0.00 35.79 3.42
157 158 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
158 159 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
159 160 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
160 161 3.990369 ACTACCCATTGTGGCTAGTCTA 58.010 45.455 0.00 0.00 35.79 2.59
161 162 4.359105 ACTACCCATTGTGGCTAGTCTAA 58.641 43.478 0.00 0.00 35.79 2.10
162 163 3.914426 ACCCATTGTGGCTAGTCTAAG 57.086 47.619 0.00 0.00 35.79 2.18
163 164 2.092914 ACCCATTGTGGCTAGTCTAAGC 60.093 50.000 0.00 0.00 41.99 3.09
164 165 2.092968 CCCATTGTGGCTAGTCTAAGCA 60.093 50.000 0.00 0.00 44.64 3.91
165 166 2.939103 CCATTGTGGCTAGTCTAAGCAC 59.061 50.000 0.00 0.00 44.64 4.40
166 167 3.599343 CATTGTGGCTAGTCTAAGCACA 58.401 45.455 0.00 0.00 44.64 4.57
167 168 3.319137 TTGTGGCTAGTCTAAGCACAG 57.681 47.619 0.00 0.00 44.64 3.66
168 169 1.550524 TGTGGCTAGTCTAAGCACAGG 59.449 52.381 0.00 0.00 44.64 4.00
169 170 0.537188 TGGCTAGTCTAAGCACAGGC 59.463 55.000 0.00 0.00 44.64 4.85
179 180 2.191641 GCACAGGCTGATCTCCCC 59.808 66.667 23.66 0.00 36.96 4.81
180 181 2.503061 CACAGGCTGATCTCCCCG 59.497 66.667 23.66 0.00 0.00 5.73
181 182 2.765807 ACAGGCTGATCTCCCCGG 60.766 66.667 23.66 0.00 0.00 5.73
182 183 2.444706 CAGGCTGATCTCCCCGGA 60.445 66.667 9.42 0.00 0.00 5.14
183 184 2.066393 CAGGCTGATCTCCCCGGAA 61.066 63.158 9.42 0.00 0.00 4.30
184 185 2.066999 AGGCTGATCTCCCCGGAAC 61.067 63.158 0.73 0.00 0.00 3.62
185 186 2.367202 GGCTGATCTCCCCGGAACA 61.367 63.158 0.73 0.00 0.00 3.18
195 196 2.335712 CCCGGAACAAGGCTGCTTC 61.336 63.158 0.73 0.00 0.00 3.86
232 233 1.740380 CGTCATTTCATCTCACGCCCT 60.740 52.381 0.00 0.00 0.00 5.19
233 234 1.936547 GTCATTTCATCTCACGCCCTC 59.063 52.381 0.00 0.00 0.00 4.30
234 235 1.134401 TCATTTCATCTCACGCCCTCC 60.134 52.381 0.00 0.00 0.00 4.30
235 236 0.911769 ATTTCATCTCACGCCCTCCA 59.088 50.000 0.00 0.00 0.00 3.86
236 237 0.036388 TTTCATCTCACGCCCTCCAC 60.036 55.000 0.00 0.00 0.00 4.02
237 238 0.904865 TTCATCTCACGCCCTCCACT 60.905 55.000 0.00 0.00 0.00 4.00
238 239 1.153489 CATCTCACGCCCTCCACTG 60.153 63.158 0.00 0.00 0.00 3.66
239 240 3.023949 ATCTCACGCCCTCCACTGC 62.024 63.158 0.00 0.00 0.00 4.40
240 241 3.699894 CTCACGCCCTCCACTGCT 61.700 66.667 0.00 0.00 0.00 4.24
241 242 2.283604 TCACGCCCTCCACTGCTA 60.284 61.111 0.00 0.00 0.00 3.49
242 243 2.125512 CACGCCCTCCACTGCTAC 60.126 66.667 0.00 0.00 0.00 3.58
243 244 2.283966 ACGCCCTCCACTGCTACT 60.284 61.111 0.00 0.00 0.00 2.57
244 245 2.352032 ACGCCCTCCACTGCTACTC 61.352 63.158 0.00 0.00 0.00 2.59
251 252 0.817654 TCCACTGCTACTCATCCACG 59.182 55.000 0.00 0.00 0.00 4.94
287 288 2.316108 GTTCCAACCACCATTGACCTT 58.684 47.619 0.00 0.00 0.00 3.50
288 289 1.993956 TCCAACCACCATTGACCTTG 58.006 50.000 0.00 0.00 0.00 3.61
292 293 1.228831 CCACCATTGACCTTGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
322 335 5.068636 ACAAGCTCTGAACAAGTCAATCAT 58.931 37.500 0.00 0.00 35.22 2.45
323 336 6.233434 ACAAGCTCTGAACAAGTCAATCATA 58.767 36.000 0.00 0.00 35.22 2.15
333 346 7.671819 TGAACAAGTCAATCATACCCCAAATTA 59.328 33.333 0.00 0.00 31.51 1.40
339 352 7.843760 AGTCAATCATACCCCAAATTATTTCCA 59.156 33.333 0.00 0.00 0.00 3.53
361 374 0.038890 TCAATCACGCCCCAATTGGA 59.961 50.000 26.60 4.77 37.39 3.53
490 513 0.249911 CGATTCCATTCCGTCCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
491 514 1.132500 GATTCCATTCCGTCCTCCCT 58.868 55.000 0.00 0.00 0.00 4.20
492 515 1.070914 GATTCCATTCCGTCCTCCCTC 59.929 57.143 0.00 0.00 0.00 4.30
493 516 0.981277 TTCCATTCCGTCCTCCCTCC 60.981 60.000 0.00 0.00 0.00 4.30
530 553 0.997196 GCGTTTTCCAGGCTAGTACG 59.003 55.000 0.00 0.00 33.17 3.67
531 554 0.997196 CGTTTTCCAGGCTAGTACGC 59.003 55.000 0.00 0.00 0.00 4.42
665 700 2.245287 CCTCCCCTTCTCCAGTAGTAGT 59.755 54.545 0.00 0.00 0.00 2.73
676 720 8.572855 TTCTCCAGTAGTAGTAGTACTTTTCC 57.427 38.462 15.34 2.69 40.23 3.13
780 857 2.685380 CCCGCTGGTCTTCCTCCT 60.685 66.667 0.00 0.00 34.23 3.69
828 926 1.304962 TCCAGTCAGCCCGCTTCTA 60.305 57.895 0.00 0.00 0.00 2.10
836 934 1.040339 AGCCCGCTTCTACTCTCCAG 61.040 60.000 0.00 0.00 0.00 3.86
917 1015 0.822164 AAGATCGACGGACCGGAATT 59.178 50.000 20.00 0.00 0.00 2.17
926 1024 1.442148 GACCGGAATTAGGAGCGCT 59.558 57.895 11.27 11.27 0.00 5.92
927 1025 0.179081 GACCGGAATTAGGAGCGCTT 60.179 55.000 13.26 0.00 0.00 4.68
928 1026 0.462047 ACCGGAATTAGGAGCGCTTG 60.462 55.000 13.26 0.00 0.00 4.01
930 1028 1.369625 CGGAATTAGGAGCGCTTGTT 58.630 50.000 13.26 2.52 0.00 2.83
931 1029 1.327764 CGGAATTAGGAGCGCTTGTTC 59.672 52.381 13.26 11.50 0.00 3.18
933 1031 2.352960 GGAATTAGGAGCGCTTGTTCTG 59.647 50.000 13.26 0.00 0.00 3.02
934 1032 2.029838 ATTAGGAGCGCTTGTTCTGG 57.970 50.000 13.26 0.00 0.00 3.86
935 1033 0.685097 TTAGGAGCGCTTGTTCTGGT 59.315 50.000 13.26 0.00 0.00 4.00
937 1035 2.558313 GAGCGCTTGTTCTGGTGC 59.442 61.111 13.26 0.00 38.99 5.01
1107 1205 3.998672 GAAGGTGCCGGGTCGTGA 61.999 66.667 2.18 0.00 0.00 4.35
1179 1277 2.147150 GTTTGACTCTGTTCAGGGCTC 58.853 52.381 0.00 0.00 0.00 4.70
1244 1342 1.899142 GAGATGGTAGAGGCTGATCCC 59.101 57.143 0.00 0.00 34.51 3.85
1372 1478 2.585330 TGCACAGAAAAAGATGGAGCA 58.415 42.857 0.00 0.00 31.85 4.26
1388 1494 2.476185 GGAGCACGGATTTGTCATTTCG 60.476 50.000 0.00 0.00 0.00 3.46
1429 1538 7.209471 TCAACGCCTGAATTAAACTGTTAAT 57.791 32.000 0.00 0.00 40.88 1.40
1447 1556 9.154632 ACTGTTAATAAGAAAACCAAGGGATTT 57.845 29.630 0.00 0.00 30.42 2.17
1504 1616 3.067985 GGGGGTTTGTGGCCATTG 58.932 61.111 9.72 0.00 0.00 2.82
1578 1691 9.558396 AATGATTGGCATTTTCTTGTTCTAAAA 57.442 25.926 0.00 0.00 44.68 1.52
1646 1779 2.235570 AGGAGGGCCCTTATTCTGC 58.764 57.895 29.39 11.27 44.85 4.26
1647 1780 0.624500 AGGAGGGCCCTTATTCTGCA 60.625 55.000 29.39 0.00 44.85 4.41
1649 1782 1.613836 GAGGGCCCTTATTCTGCATG 58.386 55.000 29.39 0.00 0.00 4.06
1930 2069 3.569701 TCAAATCTTGGTCTGAAAGGCAC 59.430 43.478 0.00 0.00 43.51 5.01
2000 2139 7.661536 AGCATATTCTGTACTTCCTTCAGTA 57.338 36.000 0.00 0.00 0.00 2.74
2130 2273 8.201464 TGCACTTCGATCTAGGATTTTATGTTA 58.799 33.333 0.00 0.00 0.00 2.41
2134 2277 7.869016 TCGATCTAGGATTTTATGTTAAGCG 57.131 36.000 0.00 0.00 0.00 4.68
2163 2306 7.170320 GCAGTAAAGCTGTAACTTTGTAGTGTA 59.830 37.037 0.00 0.00 46.64 2.90
2185 2328 8.560374 GTGTATATGTTTTCCTTATGAGGCTTC 58.440 37.037 0.00 0.00 43.21 3.86
2367 2946 0.480252 AGGCCTTCACCAAGAAAGCT 59.520 50.000 0.00 0.00 42.19 3.74
2415 3003 9.672086 TTTTTGTATCTTATGCACTTGTGTTAC 57.328 29.630 0.00 0.00 0.00 2.50
2416 3004 8.615878 TTTGTATCTTATGCACTTGTGTTACT 57.384 30.769 0.00 0.00 0.00 2.24
2417 3005 8.615878 TTGTATCTTATGCACTTGTGTTACTT 57.384 30.769 0.00 0.00 0.00 2.24
2418 3006 8.028540 TGTATCTTATGCACTTGTGTTACTTG 57.971 34.615 0.00 0.00 0.00 3.16
2419 3007 7.659799 TGTATCTTATGCACTTGTGTTACTTGT 59.340 33.333 0.00 0.00 0.00 3.16
2420 3008 6.299023 TCTTATGCACTTGTGTTACTTGTG 57.701 37.500 0.00 0.00 0.00 3.33
2421 3009 6.052360 TCTTATGCACTTGTGTTACTTGTGA 58.948 36.000 0.00 0.00 0.00 3.58
2431 3019 7.915397 ACTTGTGTTACTTGTGAAAATGATGTC 59.085 33.333 0.00 0.00 0.00 3.06
2513 3103 8.652290 AGAACTTGTTCTATGGTATTATCCCTC 58.348 37.037 13.62 0.00 0.00 4.30
2579 3169 6.263168 GGGGTACAATAACTTCAATGGATCAG 59.737 42.308 0.00 0.00 0.00 2.90
2626 3216 1.903860 ACCCTGGAGTTTATGTGCGTA 59.096 47.619 0.00 0.00 0.00 4.42
2627 3217 2.504175 ACCCTGGAGTTTATGTGCGTAT 59.496 45.455 0.00 0.00 0.00 3.06
2648 3346 7.045612 GCGTATGAACTTCGATATGTGTTTTTG 60.046 37.037 0.00 0.00 0.00 2.44
2682 3382 6.920569 TTAACTTCAAACTTGACTGACCTC 57.079 37.500 0.00 0.00 36.83 3.85
2847 3547 4.934001 TCTGAGCTTTCTTCTACTTGCATG 59.066 41.667 0.00 0.00 0.00 4.06
2902 3603 5.581126 TGAGTGCAAGTTCAAATCAAACT 57.419 34.783 0.00 0.00 38.59 2.66
3088 3798 0.248289 TTCCGTAGCAGTGTAAGGCC 59.752 55.000 0.00 0.00 0.00 5.19
3163 3873 5.382618 ACACCAAGTAGGAAGTAACTACG 57.617 43.478 0.00 0.00 44.20 3.51
3209 3919 4.773742 GGAGAACTTCCTTTATAACGCG 57.226 45.455 3.53 3.53 43.16 6.01
3211 3921 4.267214 GGAGAACTTCCTTTATAACGCGTC 59.733 45.833 14.44 0.00 43.16 5.19
3333 4043 7.876896 TTTATTGAACATTTTTCCGTTAGGC 57.123 32.000 0.00 0.00 37.47 3.93
3350 4060 5.336055 CGTTAGGCTGATCTAGTAAGGATGG 60.336 48.000 0.00 0.00 0.00 3.51
3374 4084 7.102993 GGCTTGGAAATTTTATGGCTTCTTTA 58.897 34.615 0.00 0.00 0.00 1.85
3425 4136 5.347907 ACGATCGTTTGTTTCCTCTAACATC 59.652 40.000 16.60 0.00 37.81 3.06
3491 4202 4.916183 AGACTTCTAGCAGGCAAAGAAAT 58.084 39.130 0.00 1.64 0.00 2.17
3492 4203 4.940654 AGACTTCTAGCAGGCAAAGAAATC 59.059 41.667 0.00 8.75 0.00 2.17
3658 4369 2.044551 CTGCTCCTTCCCTTGCCC 60.045 66.667 0.00 0.00 0.00 5.36
3679 4390 4.265073 CCCTCTTGTATCTCCCAACAAAG 58.735 47.826 0.00 0.00 35.32 2.77
3686 4397 5.640147 TGTATCTCCCAACAAAGACCAAAT 58.360 37.500 0.00 0.00 0.00 2.32
3688 4399 4.453480 TCTCCCAACAAAGACCAAATCT 57.547 40.909 0.00 0.00 40.46 2.40
3706 4417 2.795329 TCTTAAGCAAAGGGAGCAAGG 58.205 47.619 0.00 0.00 35.75 3.61
3725 4436 2.105466 GCAAGAGCGGGAAGAGCAG 61.105 63.158 0.00 0.00 37.01 4.24
3772 4483 2.287547 GGAGCAGCGATTTGTTTTGTGA 60.288 45.455 0.00 0.00 0.00 3.58
3989 4703 2.554032 AGAAATTTGGAGTCAACTGCGG 59.446 45.455 0.00 0.00 37.10 5.69
4247 4961 4.245660 TCATTCTTCTCAACGCTGTAAGG 58.754 43.478 4.61 0.00 0.00 2.69
4433 5147 2.865079 TGCACGGTAAGAATTCCCAAA 58.135 42.857 0.65 0.00 0.00 3.28
4485 5199 4.125703 GACTCGTGCTACTAGCCTACTAA 58.874 47.826 5.58 0.00 41.51 2.24
4486 5200 4.128643 ACTCGTGCTACTAGCCTACTAAG 58.871 47.826 5.58 2.20 41.51 2.18
4487 5201 4.128643 CTCGTGCTACTAGCCTACTAAGT 58.871 47.826 5.58 0.00 41.51 2.24
4488 5202 5.163364 ACTCGTGCTACTAGCCTACTAAGTA 60.163 44.000 5.58 0.00 41.51 2.24
4489 5203 5.295950 TCGTGCTACTAGCCTACTAAGTAG 58.704 45.833 5.58 4.71 41.51 2.57
4490 5204 4.083908 CGTGCTACTAGCCTACTAAGTAGC 60.084 50.000 21.11 21.11 45.02 3.58
4654 5368 5.622346 ATCCTCCTGTGATCCTAAGAAAC 57.378 43.478 0.00 0.00 0.00 2.78
4696 5410 3.000080 GACCGAAGACAACGCTGCG 62.000 63.158 21.91 21.91 36.68 5.18
4840 5554 1.336887 CGTCCGTTCTCCAATGACACT 60.337 52.381 0.00 0.00 0.00 3.55
4855 5569 2.111384 GACACTGGCCTCCTGATTCTA 58.889 52.381 3.32 0.00 0.00 2.10
4867 5581 1.069090 GATTCTATGGGCGCACCGA 59.931 57.895 7.46 2.32 44.64 4.69
4882 5596 2.331805 CGATACCTCACCGGCGAG 59.668 66.667 12.75 12.75 35.61 5.03
5074 5788 1.887707 GACCCCAAGGAATAGCGCG 60.888 63.158 0.00 0.00 36.73 6.86
5118 5832 8.148351 TGAAATCCTAACGGTATAGAGAAATGG 58.852 37.037 0.00 0.00 0.00 3.16
5269 5983 6.260050 TGCTCACACTATTCTTTCGTTCTTTT 59.740 34.615 0.00 0.00 0.00 2.27
5271 5985 6.954944 TCACACTATTCTTTCGTTCTTTTGG 58.045 36.000 0.00 0.00 0.00 3.28
5272 5986 6.540914 TCACACTATTCTTTCGTTCTTTTGGT 59.459 34.615 0.00 0.00 0.00 3.67
5273 5987 7.711772 TCACACTATTCTTTCGTTCTTTTGGTA 59.288 33.333 0.00 0.00 0.00 3.25
5274 5988 8.009974 CACACTATTCTTTCGTTCTTTTGGTAG 58.990 37.037 0.00 0.00 0.00 3.18
5276 5990 8.936864 CACTATTCTTTCGTTCTTTTGGTAGAT 58.063 33.333 0.00 0.00 0.00 1.98
5277 5991 8.936864 ACTATTCTTTCGTTCTTTTGGTAGATG 58.063 33.333 0.00 0.00 0.00 2.90
5279 5993 5.001232 TCTTTCGTTCTTTTGGTAGATGGG 58.999 41.667 0.00 0.00 0.00 4.00
5280 5994 4.627284 TTCGTTCTTTTGGTAGATGGGA 57.373 40.909 0.00 0.00 0.00 4.37
5281 5995 4.837093 TCGTTCTTTTGGTAGATGGGAT 57.163 40.909 0.00 0.00 0.00 3.85
5282 5996 4.766375 TCGTTCTTTTGGTAGATGGGATC 58.234 43.478 0.00 0.00 0.00 3.36
5284 5998 4.572389 CGTTCTTTTGGTAGATGGGATCTG 59.428 45.833 0.00 0.00 40.51 2.90
5285 5999 5.501156 GTTCTTTTGGTAGATGGGATCTGT 58.499 41.667 0.00 0.00 40.51 3.41
5286 6000 5.779241 TCTTTTGGTAGATGGGATCTGTT 57.221 39.130 0.00 0.00 40.51 3.16
5287 6001 5.745227 TCTTTTGGTAGATGGGATCTGTTC 58.255 41.667 0.00 0.00 40.51 3.18
5326 6040 6.506500 AATTTGACTAGTGAAATCCTGCAG 57.493 37.500 18.80 6.78 0.00 4.41
5408 6125 3.006940 ACTTGTTTCAACAGTTCAGCGA 58.993 40.909 0.00 0.00 40.50 4.93
5413 6130 2.890808 TCAACAGTTCAGCGAAGACT 57.109 45.000 0.00 0.00 0.00 3.24
5415 6132 4.316205 TCAACAGTTCAGCGAAGACTTA 57.684 40.909 0.00 0.00 0.00 2.24
5419 6136 5.405331 ACAGTTCAGCGAAGACTTAAAAC 57.595 39.130 0.00 0.00 0.00 2.43
5996 6744 2.750637 GACCTCGGAGGCGTCTCA 60.751 66.667 23.84 0.00 39.63 3.27
6076 6824 0.105555 CTCTCCTCCTCCTGCTGGAT 60.106 60.000 13.33 0.00 42.29 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.584157 TCACAAGTTCATATTTTAAGGTGCATT 58.416 29.630 0.00 0.00 0.00 3.56
2 3 8.121305 TCACAAGTTCATATTTTAAGGTGCAT 57.879 30.769 0.00 0.00 0.00 3.96
4 5 7.489113 CCATCACAAGTTCATATTTTAAGGTGC 59.511 37.037 0.00 0.00 0.00 5.01
5 6 7.975616 CCCATCACAAGTTCATATTTTAAGGTG 59.024 37.037 0.00 0.00 0.00 4.00
6 7 7.124147 CCCCATCACAAGTTCATATTTTAAGGT 59.876 37.037 0.00 0.00 0.00 3.50
7 8 7.341769 TCCCCATCACAAGTTCATATTTTAAGG 59.658 37.037 0.00 0.00 0.00 2.69
8 9 8.292444 TCCCCATCACAAGTTCATATTTTAAG 57.708 34.615 0.00 0.00 0.00 1.85
9 10 8.527810 GTTCCCCATCACAAGTTCATATTTTAA 58.472 33.333 0.00 0.00 0.00 1.52
10 11 7.671819 TGTTCCCCATCACAAGTTCATATTTTA 59.328 33.333 0.00 0.00 0.00 1.52
11 12 6.496565 TGTTCCCCATCACAAGTTCATATTTT 59.503 34.615 0.00 0.00 0.00 1.82
12 13 6.015918 TGTTCCCCATCACAAGTTCATATTT 58.984 36.000 0.00 0.00 0.00 1.40
13 14 5.579047 TGTTCCCCATCACAAGTTCATATT 58.421 37.500 0.00 0.00 0.00 1.28
14 15 5.191727 TGTTCCCCATCACAAGTTCATAT 57.808 39.130 0.00 0.00 0.00 1.78
15 16 4.649267 TGTTCCCCATCACAAGTTCATA 57.351 40.909 0.00 0.00 0.00 2.15
16 17 3.524095 TGTTCCCCATCACAAGTTCAT 57.476 42.857 0.00 0.00 0.00 2.57
17 18 2.955660 GTTGTTCCCCATCACAAGTTCA 59.044 45.455 0.00 0.00 33.55 3.18
18 19 2.296190 GGTTGTTCCCCATCACAAGTTC 59.704 50.000 0.00 0.00 33.55 3.01
19 20 2.316108 GGTTGTTCCCCATCACAAGTT 58.684 47.619 0.00 0.00 33.55 2.66
20 21 1.216678 TGGTTGTTCCCCATCACAAGT 59.783 47.619 0.00 0.00 33.55 3.16
21 22 1.993956 TGGTTGTTCCCCATCACAAG 58.006 50.000 0.00 0.00 33.55 3.16
22 23 2.461300 TTGGTTGTTCCCCATCACAA 57.539 45.000 0.00 0.00 34.77 3.33
23 24 2.461300 TTTGGTTGTTCCCCATCACA 57.539 45.000 0.00 0.00 34.77 3.58
24 25 3.323403 TCAATTTGGTTGTTCCCCATCAC 59.677 43.478 0.00 0.00 38.95 3.06
25 26 3.577848 CTCAATTTGGTTGTTCCCCATCA 59.422 43.478 0.00 0.00 38.95 3.07
26 27 3.617288 GCTCAATTTGGTTGTTCCCCATC 60.617 47.826 0.00 0.00 38.95 3.51
27 28 2.302733 GCTCAATTTGGTTGTTCCCCAT 59.697 45.455 0.00 0.00 38.95 4.00
28 29 1.691434 GCTCAATTTGGTTGTTCCCCA 59.309 47.619 0.00 0.00 38.95 4.96
29 30 1.001974 GGCTCAATTTGGTTGTTCCCC 59.998 52.381 0.00 0.00 38.95 4.81
30 31 1.970640 AGGCTCAATTTGGTTGTTCCC 59.029 47.619 0.00 0.00 38.95 3.97
31 32 3.751479 AAGGCTCAATTTGGTTGTTCC 57.249 42.857 0.00 0.00 38.95 3.62
32 33 8.825667 TTTTATAAGGCTCAATTTGGTTGTTC 57.174 30.769 0.00 0.00 38.95 3.18
33 34 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
34 35 7.823799 CCATTTTATAAGGCTCAATTTGGTTGT 59.176 33.333 0.00 0.00 38.95 3.32
35 36 8.040132 TCCATTTTATAAGGCTCAATTTGGTTG 58.960 33.333 0.00 0.00 39.25 3.77
36 37 8.144862 TCCATTTTATAAGGCTCAATTTGGTT 57.855 30.769 0.00 0.00 0.00 3.67
37 38 7.732222 TCCATTTTATAAGGCTCAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
38 39 8.882736 GTTTCCATTTTATAAGGCTCAATTTGG 58.117 33.333 0.00 0.00 0.00 3.28
39 40 9.434420 TGTTTCCATTTTATAAGGCTCAATTTG 57.566 29.630 0.00 0.00 0.00 2.32
40 41 9.435688 GTGTTTCCATTTTATAAGGCTCAATTT 57.564 29.630 0.00 0.00 0.00 1.82
41 42 8.815912 AGTGTTTCCATTTTATAAGGCTCAATT 58.184 29.630 0.00 0.00 0.00 2.32
42 43 8.366359 AGTGTTTCCATTTTATAAGGCTCAAT 57.634 30.769 0.00 0.00 0.00 2.57
43 44 7.775053 AGTGTTTCCATTTTATAAGGCTCAA 57.225 32.000 0.00 0.00 0.00 3.02
44 45 8.871629 TTAGTGTTTCCATTTTATAAGGCTCA 57.128 30.769 0.00 0.00 0.00 4.26
45 46 9.174166 TCTTAGTGTTTCCATTTTATAAGGCTC 57.826 33.333 0.00 0.00 0.00 4.70
46 47 9.700831 ATCTTAGTGTTTCCATTTTATAAGGCT 57.299 29.630 0.00 0.00 0.00 4.58
58 59 8.730680 GCTTATCTCAAAATCTTAGTGTTTCCA 58.269 33.333 0.00 0.00 0.00 3.53
59 60 8.184848 GGCTTATCTCAAAATCTTAGTGTTTCC 58.815 37.037 0.00 0.00 0.00 3.13
60 61 8.951243 AGGCTTATCTCAAAATCTTAGTGTTTC 58.049 33.333 0.00 0.00 0.00 2.78
61 62 8.870075 AGGCTTATCTCAAAATCTTAGTGTTT 57.130 30.769 0.00 0.00 0.00 2.83
62 63 8.870075 AAGGCTTATCTCAAAATCTTAGTGTT 57.130 30.769 0.00 0.00 0.00 3.32
69 70 9.057089 CGGTTTATAAGGCTTATCTCAAAATCT 57.943 33.333 22.39 0.00 0.00 2.40
70 71 8.290325 CCGGTTTATAAGGCTTATCTCAAAATC 58.710 37.037 22.39 15.72 0.00 2.17
71 72 7.996644 TCCGGTTTATAAGGCTTATCTCAAAAT 59.003 33.333 22.39 1.61 0.00 1.82
72 73 7.340256 TCCGGTTTATAAGGCTTATCTCAAAA 58.660 34.615 22.39 14.37 0.00 2.44
73 74 6.891388 TCCGGTTTATAAGGCTTATCTCAAA 58.109 36.000 22.39 14.69 0.00 2.69
74 75 6.488769 TCCGGTTTATAAGGCTTATCTCAA 57.511 37.500 22.39 9.63 0.00 3.02
75 76 6.488769 TTCCGGTTTATAAGGCTTATCTCA 57.511 37.500 22.39 3.59 0.00 3.27
76 77 6.427242 CCTTTCCGGTTTATAAGGCTTATCTC 59.573 42.308 22.39 13.49 31.59 2.75
77 78 6.100714 TCCTTTCCGGTTTATAAGGCTTATCT 59.899 38.462 22.39 4.32 37.62 1.98
78 79 6.293698 TCCTTTCCGGTTTATAAGGCTTATC 58.706 40.000 22.39 9.18 37.62 1.75
79 80 6.256643 TCCTTTCCGGTTTATAAGGCTTAT 57.743 37.500 22.36 22.36 37.62 1.73
80 81 5.697082 TCCTTTCCGGTTTATAAGGCTTA 57.303 39.130 9.79 9.79 37.62 3.09
81 82 4.579647 TCCTTTCCGGTTTATAAGGCTT 57.420 40.909 4.58 4.58 37.62 4.35
82 83 4.226620 TCTTCCTTTCCGGTTTATAAGGCT 59.773 41.667 0.00 0.00 37.62 4.58
83 84 4.520179 TCTTCCTTTCCGGTTTATAAGGC 58.480 43.478 0.00 0.00 37.62 4.35
84 85 5.985911 TCTCTTCCTTTCCGGTTTATAAGG 58.014 41.667 0.00 8.36 38.78 2.69
85 86 8.422566 ACTATCTCTTCCTTTCCGGTTTATAAG 58.577 37.037 0.00 1.77 0.00 1.73
86 87 8.315220 ACTATCTCTTCCTTTCCGGTTTATAA 57.685 34.615 0.00 0.00 0.00 0.98
87 88 7.909485 ACTATCTCTTCCTTTCCGGTTTATA 57.091 36.000 0.00 0.00 0.00 0.98
88 89 6.809976 ACTATCTCTTCCTTTCCGGTTTAT 57.190 37.500 0.00 0.00 0.00 1.40
89 90 7.178983 TGTTACTATCTCTTCCTTTCCGGTTTA 59.821 37.037 0.00 0.00 0.00 2.01
90 91 6.013984 TGTTACTATCTCTTCCTTTCCGGTTT 60.014 38.462 0.00 0.00 0.00 3.27
91 92 5.482878 TGTTACTATCTCTTCCTTTCCGGTT 59.517 40.000 0.00 0.00 0.00 4.44
92 93 5.021458 TGTTACTATCTCTTCCTTTCCGGT 58.979 41.667 0.00 0.00 0.00 5.28
93 94 5.593679 TGTTACTATCTCTTCCTTTCCGG 57.406 43.478 0.00 0.00 0.00 5.14
94 95 5.986135 CCATGTTACTATCTCTTCCTTTCCG 59.014 44.000 0.00 0.00 0.00 4.30
95 96 6.292150 CCCATGTTACTATCTCTTCCTTTCC 58.708 44.000 0.00 0.00 0.00 3.13
96 97 5.760743 GCCCATGTTACTATCTCTTCCTTTC 59.239 44.000 0.00 0.00 0.00 2.62
97 98 5.191722 TGCCCATGTTACTATCTCTTCCTTT 59.808 40.000 0.00 0.00 0.00 3.11
98 99 4.721776 TGCCCATGTTACTATCTCTTCCTT 59.278 41.667 0.00 0.00 0.00 3.36
99 100 4.298626 TGCCCATGTTACTATCTCTTCCT 58.701 43.478 0.00 0.00 0.00 3.36
100 101 4.689612 TGCCCATGTTACTATCTCTTCC 57.310 45.455 0.00 0.00 0.00 3.46
101 102 9.372369 GTAATATGCCCATGTTACTATCTCTTC 57.628 37.037 16.05 0.00 40.21 2.87
102 103 9.105844 AGTAATATGCCCATGTTACTATCTCTT 57.894 33.333 21.36 4.21 46.68 2.85
103 104 8.671987 AGTAATATGCCCATGTTACTATCTCT 57.328 34.615 21.36 4.74 46.68 3.10
110 111 9.677567 CACAAAATAGTAATATGCCCATGTTAC 57.322 33.333 15.73 15.73 42.23 2.50
111 112 9.415008 ACACAAAATAGTAATATGCCCATGTTA 57.585 29.630 0.00 0.00 0.00 2.41
112 113 8.305046 ACACAAAATAGTAATATGCCCATGTT 57.695 30.769 0.00 0.00 0.00 2.71
113 114 7.896383 ACACAAAATAGTAATATGCCCATGT 57.104 32.000 0.00 0.00 0.00 3.21
114 115 9.677567 GTAACACAAAATAGTAATATGCCCATG 57.322 33.333 0.00 0.00 0.00 3.66
115 116 9.640952 AGTAACACAAAATAGTAATATGCCCAT 57.359 29.630 0.00 0.00 0.00 4.00
124 125 9.796180 ACAATGGGTAGTAACACAAAATAGTAA 57.204 29.630 0.00 0.00 43.81 2.24
125 126 9.221933 CACAATGGGTAGTAACACAAAATAGTA 57.778 33.333 0.00 0.00 43.81 1.82
126 127 7.175990 CCACAATGGGTAGTAACACAAAATAGT 59.824 37.037 0.00 0.00 43.81 2.12
127 128 7.535139 CCACAATGGGTAGTAACACAAAATAG 58.465 38.462 0.00 0.00 43.81 1.73
128 129 6.071840 GCCACAATGGGTAGTAACACAAAATA 60.072 38.462 0.00 0.00 43.81 1.40
129 130 5.279256 GCCACAATGGGTAGTAACACAAAAT 60.279 40.000 0.00 0.00 43.81 1.82
130 131 4.038162 GCCACAATGGGTAGTAACACAAAA 59.962 41.667 0.00 0.00 43.81 2.44
131 132 3.570550 GCCACAATGGGTAGTAACACAAA 59.429 43.478 0.00 0.00 43.81 2.83
132 133 3.150767 GCCACAATGGGTAGTAACACAA 58.849 45.455 0.00 0.00 43.81 3.33
133 134 2.785562 GCCACAATGGGTAGTAACACA 58.214 47.619 0.00 0.00 44.98 3.72
143 144 2.092968 TGCTTAGACTAGCCACAATGGG 60.093 50.000 0.00 0.00 40.49 4.00
144 145 2.939103 GTGCTTAGACTAGCCACAATGG 59.061 50.000 8.78 0.00 40.49 3.16
145 146 3.599343 TGTGCTTAGACTAGCCACAATG 58.401 45.455 12.30 0.00 40.49 2.82
146 147 3.369892 CCTGTGCTTAGACTAGCCACAAT 60.370 47.826 14.42 0.00 40.49 2.71
147 148 2.028112 CCTGTGCTTAGACTAGCCACAA 60.028 50.000 14.42 4.14 40.49 3.33
148 149 1.550524 CCTGTGCTTAGACTAGCCACA 59.449 52.381 13.41 13.41 40.49 4.17
149 150 1.740718 GCCTGTGCTTAGACTAGCCAC 60.741 57.143 7.34 7.34 40.49 5.01
150 151 0.537188 GCCTGTGCTTAGACTAGCCA 59.463 55.000 0.00 0.00 40.49 4.75
151 152 3.371087 GCCTGTGCTTAGACTAGCC 57.629 57.895 0.00 0.00 40.49 3.93
162 163 2.191641 GGGGAGATCAGCCTGTGC 59.808 66.667 0.00 0.00 37.95 4.57
163 164 2.503061 CGGGGAGATCAGCCTGTG 59.497 66.667 0.00 0.00 0.00 3.66
164 165 2.765807 CCGGGGAGATCAGCCTGT 60.766 66.667 0.00 0.00 0.00 4.00
165 166 2.066393 TTCCGGGGAGATCAGCCTG 61.066 63.158 0.00 0.00 0.00 4.85
166 167 2.066999 GTTCCGGGGAGATCAGCCT 61.067 63.158 0.00 0.00 0.00 4.58
167 168 1.910580 TTGTTCCGGGGAGATCAGCC 61.911 60.000 0.00 0.00 0.00 4.85
168 169 0.462759 CTTGTTCCGGGGAGATCAGC 60.463 60.000 0.00 0.00 0.00 4.26
169 170 0.179000 CCTTGTTCCGGGGAGATCAG 59.821 60.000 0.00 0.00 0.00 2.90
170 171 1.910580 GCCTTGTTCCGGGGAGATCA 61.911 60.000 0.00 0.00 0.00 2.92
171 172 1.153147 GCCTTGTTCCGGGGAGATC 60.153 63.158 0.00 0.00 0.00 2.75
172 173 1.616628 AGCCTTGTTCCGGGGAGAT 60.617 57.895 0.00 0.00 0.00 2.75
173 174 2.203938 AGCCTTGTTCCGGGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
174 175 2.045926 CAGCCTTGTTCCGGGGAG 60.046 66.667 0.00 0.00 0.00 4.30
175 176 4.344865 GCAGCCTTGTTCCGGGGA 62.345 66.667 0.00 0.00 0.00 4.81
176 177 3.868200 AAGCAGCCTTGTTCCGGGG 62.868 63.158 0.00 0.00 0.00 5.73
177 178 2.282462 AAGCAGCCTTGTTCCGGG 60.282 61.111 0.00 0.00 0.00 5.73
178 179 2.335712 GGAAGCAGCCTTGTTCCGG 61.336 63.158 0.00 0.00 30.84 5.14
179 180 3.267974 GGAAGCAGCCTTGTTCCG 58.732 61.111 0.00 0.00 30.84 4.30
180 181 1.600916 ACGGAAGCAGCCTTGTTCC 60.601 57.895 1.69 1.69 37.05 3.62
181 182 1.576421 CACGGAAGCAGCCTTGTTC 59.424 57.895 0.00 0.00 0.00 3.18
182 183 1.898574 CCACGGAAGCAGCCTTGTT 60.899 57.895 0.00 0.00 0.00 2.83
183 184 2.281761 CCACGGAAGCAGCCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
184 185 3.741476 GCCACGGAAGCAGCCTTG 61.741 66.667 0.00 0.00 0.00 3.61
203 204 1.139853 GATGAAATGACGGAGGAGCCT 59.860 52.381 0.00 0.00 0.00 4.58
204 205 1.139853 AGATGAAATGACGGAGGAGCC 59.860 52.381 0.00 0.00 0.00 4.70
205 206 2.159043 TGAGATGAAATGACGGAGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
232 233 0.817654 CGTGGATGAGTAGCAGTGGA 59.182 55.000 0.00 0.00 0.00 4.02
233 234 0.532573 ACGTGGATGAGTAGCAGTGG 59.467 55.000 0.00 0.00 0.00 4.00
234 235 1.469940 GGACGTGGATGAGTAGCAGTG 60.470 57.143 0.00 0.00 0.00 3.66
235 236 0.818296 GGACGTGGATGAGTAGCAGT 59.182 55.000 0.00 0.00 0.00 4.40
236 237 0.817654 TGGACGTGGATGAGTAGCAG 59.182 55.000 0.00 0.00 0.00 4.24
237 238 0.530744 GTGGACGTGGATGAGTAGCA 59.469 55.000 0.00 0.00 0.00 3.49
238 239 0.525668 CGTGGACGTGGATGAGTAGC 60.526 60.000 0.00 0.00 34.11 3.58
239 240 3.624305 CGTGGACGTGGATGAGTAG 57.376 57.895 0.00 0.00 34.11 2.57
263 264 1.134068 TCAATGGTGGTTGGAACGTCA 60.134 47.619 0.00 0.00 0.00 4.35
287 288 1.039856 GAGCTTGTTTTTCCTGGGCA 58.960 50.000 0.00 0.00 0.00 5.36
288 289 1.000171 CAGAGCTTGTTTTTCCTGGGC 60.000 52.381 0.00 0.00 0.00 5.36
292 293 4.706962 ACTTGTTCAGAGCTTGTTTTTCCT 59.293 37.500 0.00 0.00 0.00 3.36
294 295 5.640732 TGACTTGTTCAGAGCTTGTTTTTC 58.359 37.500 0.00 0.00 0.00 2.29
299 312 4.454678 TGATTGACTTGTTCAGAGCTTGT 58.545 39.130 0.00 0.00 34.94 3.16
300 313 5.624344 ATGATTGACTTGTTCAGAGCTTG 57.376 39.130 0.00 0.00 34.94 4.01
322 335 8.064389 TGATTGATCTGGAAATAATTTGGGGTA 58.936 33.333 0.00 0.00 0.00 3.69
323 336 6.902416 TGATTGATCTGGAAATAATTTGGGGT 59.098 34.615 0.00 0.00 0.00 4.95
333 346 2.301346 GGGCGTGATTGATCTGGAAAT 58.699 47.619 0.00 0.00 0.00 2.17
339 352 2.026641 CAATTGGGGCGTGATTGATCT 58.973 47.619 0.00 0.00 33.67 2.75
378 391 0.243636 GGTCTGGCGTGGAAAAATGG 59.756 55.000 0.00 0.00 0.00 3.16
380 393 1.241315 CCGGTCTGGCGTGGAAAAAT 61.241 55.000 0.00 0.00 0.00 1.82
530 553 2.098298 CACTAATGGCGTGCGTGC 59.902 61.111 0.00 0.00 0.00 5.34
531 554 2.098298 GCACTAATGGCGTGCGTG 59.902 61.111 0.00 2.41 46.81 5.34
582 614 1.819928 CGGTGTGAATGGTGGAATGA 58.180 50.000 0.00 0.00 0.00 2.57
657 692 5.044846 TCCGGGGAAAAGTACTACTACTACT 60.045 44.000 0.00 0.00 32.46 2.57
665 700 2.767960 GTGGATCCGGGGAAAAGTACTA 59.232 50.000 7.39 0.00 0.00 1.82
691 735 2.399356 GGCCGCTTGGTCTGCTAAC 61.399 63.158 0.00 0.00 33.30 2.34
757 834 3.240134 GAAGACCAGCGGGACAGCA 62.240 63.158 10.86 0.00 40.15 4.41
821 914 0.248296 GCGACTGGAGAGTAGAAGCG 60.248 60.000 0.00 0.00 30.16 4.68
917 1015 0.037326 CACCAGAACAAGCGCTCCTA 60.037 55.000 12.06 0.00 0.00 2.94
933 1031 2.281484 TCCAAGAACTGGCGCACC 60.281 61.111 10.83 0.00 45.98 5.01
934 1032 3.257933 CTCCAAGAACTGGCGCAC 58.742 61.111 10.83 0.00 45.98 5.34
937 1035 2.684843 GCTGCTCCAAGAACTGGCG 61.685 63.158 0.00 0.00 45.98 5.69
956 1054 1.079057 GAGCGACCTCCCAAGAACC 60.079 63.158 0.00 0.00 31.68 3.62
1077 1175 1.941209 GCACCTTCGTGATTCAGAGCA 60.941 52.381 0.00 0.00 43.14 4.26
1080 1178 0.389817 CGGCACCTTCGTGATTCAGA 60.390 55.000 0.00 0.00 43.14 3.27
1107 1205 2.544267 CGAAAGAAGAAGCAACCGAAGT 59.456 45.455 0.00 0.00 0.00 3.01
1179 1277 4.170292 CTGCAAAGAATCCAGGAAACAG 57.830 45.455 0.00 0.00 0.00 3.16
1261 1359 2.700773 GCGTGCCCTTCATCCCAAC 61.701 63.158 0.00 0.00 0.00 3.77
1286 1384 1.569493 CACGCCGAACCAAGAACAG 59.431 57.895 0.00 0.00 0.00 3.16
1370 1476 1.895051 CCGAAATGACAAATCCGTGC 58.105 50.000 0.00 0.00 0.00 5.34
1372 1478 1.821216 AGCCGAAATGACAAATCCGT 58.179 45.000 0.00 0.00 0.00 4.69
1388 1494 4.091365 GCGTTGATTTGTTCCAAATAAGCC 59.909 41.667 2.40 0.00 0.00 4.35
1429 1538 7.726291 TGTGATGTAAATCCCTTGGTTTTCTTA 59.274 33.333 0.00 0.00 0.00 2.10
1438 1547 9.357652 CAAGTAAAATGTGATGTAAATCCCTTG 57.642 33.333 0.00 0.00 0.00 3.61
1447 1556 8.511321 CAGCCTAAACAAGTAAAATGTGATGTA 58.489 33.333 0.00 0.00 0.00 2.29
1450 1559 7.759489 TCAGCCTAAACAAGTAAAATGTGAT 57.241 32.000 0.00 0.00 0.00 3.06
1452 1561 8.816640 AAATCAGCCTAAACAAGTAAAATGTG 57.183 30.769 0.00 0.00 0.00 3.21
1487 1599 2.592032 CCAATGGCCACAAACCCCC 61.592 63.158 8.16 0.00 0.00 5.40
1488 1600 3.067985 CCAATGGCCACAAACCCC 58.932 61.111 8.16 0.00 0.00 4.95
1489 1601 2.347114 GCCAATGGCCACAAACCC 59.653 61.111 14.47 0.00 44.06 4.11
1504 1616 5.762218 ACTAATATGATTCTGCAGTTCTGCC 59.238 40.000 19.91 6.68 0.00 4.85
1578 1691 6.736110 AAATGCAGTTGGAATGCCTTATAT 57.264 33.333 0.00 0.00 43.18 0.86
1643 1776 1.035139 GGCCCTATTTCCACATGCAG 58.965 55.000 0.00 0.00 0.00 4.41
1644 1777 0.396974 GGGCCCTATTTCCACATGCA 60.397 55.000 17.04 0.00 0.00 3.96
1645 1778 0.106015 AGGGCCCTATTTCCACATGC 60.106 55.000 27.42 0.00 0.00 4.06
1646 1779 2.459555 AAGGGCCCTATTTCCACATG 57.540 50.000 28.96 0.00 0.00 3.21
1647 1780 3.270960 TGTAAAGGGCCCTATTTCCACAT 59.729 43.478 28.96 1.84 0.00 3.21
1649 1782 3.375647 TGTAAAGGGCCCTATTTCCAC 57.624 47.619 28.96 16.51 0.00 4.02
1861 2000 8.265998 GCACACACAAATTAGTCAAAAACATAC 58.734 33.333 0.00 0.00 0.00 2.39
1862 2001 7.436673 GGCACACACAAATTAGTCAAAAACATA 59.563 33.333 0.00 0.00 0.00 2.29
1930 2069 4.615949 CTGTCCAATCTCAGGAGATAACG 58.384 47.826 11.93 4.69 46.75 3.18
2130 2273 4.386413 AGCTTTACTGCTGCGCTT 57.614 50.000 9.73 0.00 42.33 4.68
2163 2306 7.232127 CCATGAAGCCTCATAAGGAAAACATAT 59.768 37.037 0.00 0.00 46.67 1.78
2185 2328 2.837498 TCATGCAGACGGTATTCCATG 58.163 47.619 0.00 6.77 33.29 3.66
2412 3000 4.083003 GGCGGACATCATTTTCACAAGTAA 60.083 41.667 0.00 0.00 0.00 2.24
2413 3001 3.438781 GGCGGACATCATTTTCACAAGTA 59.561 43.478 0.00 0.00 0.00 2.24
2414 3002 2.228822 GGCGGACATCATTTTCACAAGT 59.771 45.455 0.00 0.00 0.00 3.16
2415 3003 2.415893 GGGCGGACATCATTTTCACAAG 60.416 50.000 0.00 0.00 0.00 3.16
2416 3004 1.543802 GGGCGGACATCATTTTCACAA 59.456 47.619 0.00 0.00 0.00 3.33
2417 3005 1.173043 GGGCGGACATCATTTTCACA 58.827 50.000 0.00 0.00 0.00 3.58
2418 3006 1.463674 AGGGCGGACATCATTTTCAC 58.536 50.000 0.00 0.00 0.00 3.18
2419 3007 2.091541 GAAGGGCGGACATCATTTTCA 58.908 47.619 0.00 0.00 0.00 2.69
2420 3008 2.091541 TGAAGGGCGGACATCATTTTC 58.908 47.619 0.00 0.00 0.00 2.29
2421 3009 2.214376 TGAAGGGCGGACATCATTTT 57.786 45.000 0.00 0.00 0.00 1.82
2431 3019 1.953686 TCAGAAAAGTTTGAAGGGCGG 59.046 47.619 0.00 0.00 0.00 6.13
2513 3103 4.325119 TCCCGTAAATCTCCTATCTCTCG 58.675 47.826 0.00 0.00 0.00 4.04
2606 3196 0.690762 ACGCACATAAACTCCAGGGT 59.309 50.000 0.00 0.00 0.00 4.34
2626 3216 6.092748 GGCAAAAACACATATCGAAGTTCAT 58.907 36.000 3.32 0.00 0.00 2.57
2627 3217 5.009110 TGGCAAAAACACATATCGAAGTTCA 59.991 36.000 3.32 0.00 0.00 3.18
2648 3346 7.491048 TCAAGTTTGAAGTTAAACTGAAATGGC 59.509 33.333 4.83 0.00 46.96 4.40
2682 3382 5.368256 AGAAAGCTGCAATTCAAGTAGTG 57.632 39.130 16.89 0.00 0.00 2.74
2756 3456 3.510531 ACCTGAGACTCACACAGACTA 57.489 47.619 0.00 0.00 39.04 2.59
2847 3547 8.171840 GCATAATCACAAGTTTAACTCTCAGAC 58.828 37.037 0.00 0.00 0.00 3.51
2902 3603 3.939740 ATCAAGCTTGCTCTAATCCCA 57.060 42.857 21.99 0.29 0.00 4.37
3071 3781 0.739813 GTGGCCTTACACTGCTACGG 60.740 60.000 3.32 0.00 38.32 4.02
3088 3798 4.647853 ACATCCATTTGATCCATTGAGGTG 59.352 41.667 0.00 0.00 39.02 4.00
3197 3907 3.181489 ACTCCAGAGACGCGTTATAAAGG 60.181 47.826 15.53 11.51 0.00 3.11
3207 3917 1.813786 AGTACTGAACTCCAGAGACGC 59.186 52.381 0.70 0.00 45.78 5.19
3209 3919 4.762765 TCTGAAGTACTGAACTCCAGAGAC 59.237 45.833 0.00 0.00 45.78 3.36
3211 3921 4.764823 AGTCTGAAGTACTGAACTCCAGAG 59.235 45.833 0.00 0.00 45.78 3.35
3333 4043 4.590647 TCCAAGCCATCCTTACTAGATCAG 59.409 45.833 0.00 0.00 31.00 2.90
3350 4060 7.201556 GCTAAAGAAGCCATAAAATTTCCAAGC 60.202 37.037 0.00 0.00 46.25 4.01
3388 4098 4.539509 AACGATCGTGTTTGCAGTAAAA 57.460 36.364 23.51 0.00 0.00 1.52
3402 4112 5.220416 GGATGTTAGAGGAAACAAACGATCG 60.220 44.000 14.88 14.88 42.33 3.69
3425 4136 5.888982 ACCCCTACATAGTGAATAACTGG 57.111 43.478 0.00 0.00 40.26 4.00
3491 4202 4.507710 CATCTCGTTCTTTGGAGAATGGA 58.492 43.478 8.13 5.66 45.14 3.41
3492 4203 3.064545 GCATCTCGTTCTTTGGAGAATGG 59.935 47.826 8.13 1.38 45.14 3.16
3658 4369 4.938226 GTCTTTGTTGGGAGATACAAGAGG 59.062 45.833 0.00 0.00 35.83 3.69
3679 4390 4.380973 GCTCCCTTTGCTTAAGATTTGGTC 60.381 45.833 6.67 0.00 35.80 4.02
3686 4397 2.555227 CCCTTGCTCCCTTTGCTTAAGA 60.555 50.000 6.67 0.00 35.80 2.10
3688 4399 1.923356 CCCTTGCTCCCTTTGCTTAA 58.077 50.000 0.00 0.00 0.00 1.85
3689 4400 0.611896 GCCCTTGCTCCCTTTGCTTA 60.612 55.000 0.00 0.00 33.53 3.09
3706 4417 2.821810 GCTCTTCCCGCTCTTGCC 60.822 66.667 0.00 0.00 35.36 4.52
3772 4483 3.920231 TGCAGCTGACAAGGATAGAAT 57.080 42.857 20.43 0.00 0.00 2.40
3905 4616 7.609760 TCGTAGAAATGCATCTTAACATGTT 57.390 32.000 16.68 16.68 0.00 2.71
3906 4617 7.495606 TGATCGTAGAAATGCATCTTAACATGT 59.504 33.333 0.00 0.00 43.58 3.21
3989 4703 6.032717 GCCTGCAAAATAGAAGTCAGAATTC 58.967 40.000 2.17 2.17 0.00 2.17
4247 4961 9.703892 ATCATATCTATGTTAGAAACTCAGCAC 57.296 33.333 0.00 0.00 38.50 4.40
4433 5147 5.928264 GGCAAGAAGAATAACAAAATGTGCT 59.072 36.000 0.00 0.00 0.00 4.40
4518 5232 6.754209 TGCAACAAAAATGTTTCGATGTTAGT 59.246 30.769 0.00 0.00 30.48 2.24
4536 5250 3.485394 TCTGCCTCATTAACTGCAACAA 58.515 40.909 0.00 0.00 32.58 2.83
4654 5368 2.209838 ATATGCACGACGAGTTCAGG 57.790 50.000 0.00 0.00 27.74 3.86
4696 5410 4.201724 CCGAAACTGATGTCCGAAATCTTC 60.202 45.833 0.20 0.00 0.00 2.87
4705 5419 0.652592 CATCGCCGAAACTGATGTCC 59.347 55.000 0.00 0.00 35.81 4.02
4840 5554 1.438469 CCCATAGAATCAGGAGGCCA 58.562 55.000 5.01 0.00 0.00 5.36
4855 5569 3.161450 AGGTATCGGTGCGCCCAT 61.161 61.111 11.56 6.11 0.00 4.00
4867 5581 2.017559 GCTTCTCGCCGGTGAGGTAT 62.018 60.000 37.63 0.00 43.70 2.73
4912 5626 0.835941 CCAAGGGGACTGATCTGAGG 59.164 60.000 6.60 0.00 42.68 3.86
5002 5716 2.039951 CTCCGGGTTACCTCCCCA 59.960 66.667 0.00 0.00 44.32 4.96
5074 5788 1.529244 AAGCTCAGCCCACCACAAC 60.529 57.895 0.00 0.00 0.00 3.32
5118 5832 1.136891 GGCAATTCCACAATGGGCTAC 59.863 52.381 0.00 0.00 38.32 3.58
5269 5983 5.779241 AAAAGAACAGATCCCATCTACCA 57.221 39.130 0.00 0.00 37.58 3.25
5299 6013 8.514594 TGCAGGATTTCACTAGTCAAATTTAAG 58.485 33.333 6.17 0.00 0.00 1.85
5326 6040 2.636768 ATTTGCGCCTTACAAGCTTC 57.363 45.000 4.18 0.00 0.00 3.86
5441 6159 6.960468 TGCACATAGTACATTTCGTTTCAAA 58.040 32.000 0.00 0.00 0.00 2.69
5684 6429 2.123632 AGGAAGGCCCTGAGCAGA 59.876 61.111 0.00 0.00 45.61 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.