Multiple sequence alignment - TraesCS1B01G305000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G305000 chr1B 100.000 5681 0 0 1 5681 527837372 527831692 0.000000e+00 10491.0
1 TraesCS1B01G305000 chr1B 92.308 338 12 3 543 876 637014665 637014992 8.620000e-128 468.0
2 TraesCS1B01G305000 chr1D 93.876 3478 114 32 1872 5283 394269926 394273370 0.000000e+00 5151.0
3 TraesCS1B01G305000 chr1D 93.937 1534 42 12 261 1745 394268336 394269867 0.000000e+00 2270.0
4 TraesCS1B01G305000 chr1D 92.574 202 5 4 2 198 394268122 394268318 1.210000e-71 281.0
5 TraesCS1B01G305000 chr1D 91.589 107 9 0 5354 5460 394273607 394273713 1.280000e-31 148.0
6 TraesCS1B01G305000 chr1D 95.918 49 2 0 5306 5354 394273521 394273569 4.720000e-11 80.5
7 TraesCS1B01G305000 chr1A 95.104 2165 61 19 1727 3867 491138473 491136330 0.000000e+00 3369.0
8 TraesCS1B01G305000 chr1A 92.047 1446 51 16 3869 5284 491136166 491134755 0.000000e+00 1975.0
9 TraesCS1B01G305000 chr1A 93.043 805 22 12 968 1745 491139299 491138502 0.000000e+00 1146.0
10 TraesCS1B01G305000 chr1A 83.913 230 17 3 2 216 491139535 491139311 9.650000e-48 202.0
11 TraesCS1B01G305000 chr2D 92.486 1850 94 19 3115 4923 55142118 55140273 0.000000e+00 2604.0
12 TraesCS1B01G305000 chr2D 92.734 523 14 5 385 893 567940905 567941417 0.000000e+00 734.0
13 TraesCS1B01G305000 chr2D 89.725 545 29 3 991 1511 55142957 55142416 0.000000e+00 671.0
14 TraesCS1B01G305000 chr2D 87.565 579 53 9 261 824 621360221 621360795 0.000000e+00 652.0
15 TraesCS1B01G305000 chr2D 90.123 486 32 10 266 748 358182394 358181922 8.090000e-173 617.0
16 TraesCS1B01G305000 chr2D 93.016 315 15 1 2742 3049 55142418 55142104 2.410000e-123 453.0
17 TraesCS1B01G305000 chr2D 96.629 89 3 0 3045 3133 382455937 382456025 1.280000e-31 148.0
18 TraesCS1B01G305000 chr2D 95.652 46 2 0 166 211 55143032 55142987 2.200000e-09 75.0
19 TraesCS1B01G305000 chr2A 93.820 1618 76 16 3131 4730 55864910 55863299 0.000000e+00 2412.0
20 TraesCS1B01G305000 chr2A 89.493 533 42 8 266 784 480698244 480697712 0.000000e+00 662.0
21 TraesCS1B01G305000 chr2A 95.455 308 14 0 2742 3049 55865218 55864911 5.110000e-135 492.0
22 TraesCS1B01G305000 chr2A 85.326 368 34 15 4722 5076 55863278 55862918 4.180000e-96 363.0
23 TraesCS1B01G305000 chr2A 96.591 88 3 0 3046 3133 632952907 632952994 4.590000e-31 147.0
24 TraesCS1B01G305000 chr2A 100.000 34 0 0 5276 5309 729543425 729543392 4.750000e-06 63.9
25 TraesCS1B01G305000 chr2B 93.399 1621 83 18 3131 4730 86688695 86690312 0.000000e+00 2379.0
26 TraesCS1B01G305000 chr2B 93.059 389 26 1 1124 1511 86688001 86688389 8.260000e-158 568.0
27 TraesCS1B01G305000 chr2B 95.455 308 14 0 2742 3049 86688387 86688694 5.110000e-135 492.0
28 TraesCS1B01G305000 chr2B 94.531 128 7 0 4722 4849 86690332 86690459 1.250000e-46 198.0
29 TraesCS1B01G305000 chr2B 100.000 34 0 0 5276 5309 55713605 55713572 4.750000e-06 63.9
30 TraesCS1B01G305000 chr6D 91.475 610 22 8 303 893 427840825 427840227 0.000000e+00 811.0
31 TraesCS1B01G305000 chr6D 91.326 611 23 7 303 893 10213238 10212638 0.000000e+00 808.0
32 TraesCS1B01G305000 chr6D 93.684 95 5 1 3047 3141 199210413 199210320 2.130000e-29 141.0
33 TraesCS1B01G305000 chr7D 91.419 606 22 9 308 893 114196137 114196732 0.000000e+00 804.0
34 TraesCS1B01G305000 chr7D 89.308 318 33 1 3347 3663 382365404 382365087 1.150000e-106 398.0
35 TraesCS1B01G305000 chr7B 90.038 532 40 4 262 780 131903350 131902819 0.000000e+00 676.0
36 TraesCS1B01G305000 chr7B 91.948 385 25 4 261 639 152070394 152070778 8.380000e-148 534.0
37 TraesCS1B01G305000 chr7B 100.000 34 0 0 5276 5309 573328277 573328310 4.750000e-06 63.9
38 TraesCS1B01G305000 chr7B 100.000 34 0 0 5276 5309 638181611 638181578 4.750000e-06 63.9
39 TraesCS1B01G305000 chr7A 89.981 519 34 9 261 761 683511516 683510998 0.000000e+00 654.0
40 TraesCS1B01G305000 chr7A 92.105 418 19 2 478 891 190647544 190647951 1.370000e-160 577.0
41 TraesCS1B01G305000 chr7A 87.958 191 23 0 3350 3540 121334423 121334233 5.730000e-55 226.0
42 TraesCS1B01G305000 chr3D 87.241 580 54 10 260 824 49962571 49963145 1.330000e-180 643.0
43 TraesCS1B01G305000 chr3D 79.054 296 56 5 1129 1421 455853504 455853796 1.250000e-46 198.0
44 TraesCS1B01G305000 chr3D 94.624 93 5 0 3045 3137 302930474 302930382 1.650000e-30 145.0
45 TraesCS1B01G305000 chr5A 90.826 436 21 3 467 893 539438748 539439173 2.970000e-157 566.0
46 TraesCS1B01G305000 chr5A 89.286 112 6 5 3027 3133 533835215 533835105 9.930000e-28 135.0
47 TraesCS1B01G305000 chr5D 96.043 278 7 2 604 877 442743505 442743228 3.120000e-122 449.0
48 TraesCS1B01G305000 chr5D 88.365 318 36 1 3347 3663 32410507 32410824 1.160000e-101 381.0
49 TraesCS1B01G305000 chr5D 95.556 90 4 0 3046 3135 310705352 310705263 1.650000e-30 145.0
50 TraesCS1B01G305000 chr5B 86.598 194 25 1 3347 3539 577886431 577886624 4.460000e-51 213.0
51 TraesCS1B01G305000 chr5B 93.243 74 3 2 3985 4058 577886636 577886707 2.160000e-19 108.0
52 TraesCS1B01G305000 chr3B 78.041 296 59 5 1129 1421 602295972 602296264 1.260000e-41 182.0
53 TraesCS1B01G305000 chr3B 88.889 81 9 0 5192 5272 652463350 652463430 3.620000e-17 100.0
54 TraesCS1B01G305000 chr3A 77.703 296 60 5 1129 1421 598542892 598543184 5.850000e-40 176.0
55 TraesCS1B01G305000 chr4D 84.524 168 17 4 5119 5284 215393864 215393704 2.120000e-34 158.0
56 TraesCS1B01G305000 chr6B 94.681 94 5 0 3048 3141 233032498 233032405 4.590000e-31 147.0
57 TraesCS1B01G305000 chr6B 100.000 34 0 0 5276 5309 518056672 518056639 4.750000e-06 63.9
58 TraesCS1B01G305000 chr4A 87.805 82 8 2 5192 5272 637399419 637399499 1.690000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G305000 chr1B 527831692 527837372 5680 True 10491.00 10491 100.000000 1 5681 1 chr1B.!!$R1 5680
1 TraesCS1B01G305000 chr1D 394268122 394273713 5591 False 1586.10 5151 93.578800 2 5460 5 chr1D.!!$F1 5458
2 TraesCS1B01G305000 chr1A 491134755 491139535 4780 True 1673.00 3369 91.026750 2 5284 4 chr1A.!!$R1 5282
3 TraesCS1B01G305000 chr2D 55140273 55143032 2759 True 950.75 2604 92.719750 166 4923 4 chr2D.!!$R2 4757
4 TraesCS1B01G305000 chr2D 567940905 567941417 512 False 734.00 734 92.734000 385 893 1 chr2D.!!$F2 508
5 TraesCS1B01G305000 chr2D 621360221 621360795 574 False 652.00 652 87.565000 261 824 1 chr2D.!!$F3 563
6 TraesCS1B01G305000 chr2A 55862918 55865218 2300 True 1089.00 2412 91.533667 2742 5076 3 chr2A.!!$R3 2334
7 TraesCS1B01G305000 chr2A 480697712 480698244 532 True 662.00 662 89.493000 266 784 1 chr2A.!!$R1 518
8 TraesCS1B01G305000 chr2B 86688001 86690459 2458 False 909.25 2379 94.111000 1124 4849 4 chr2B.!!$F1 3725
9 TraesCS1B01G305000 chr6D 427840227 427840825 598 True 811.00 811 91.475000 303 893 1 chr6D.!!$R3 590
10 TraesCS1B01G305000 chr6D 10212638 10213238 600 True 808.00 808 91.326000 303 893 1 chr6D.!!$R1 590
11 TraesCS1B01G305000 chr7D 114196137 114196732 595 False 804.00 804 91.419000 308 893 1 chr7D.!!$F1 585
12 TraesCS1B01G305000 chr7B 131902819 131903350 531 True 676.00 676 90.038000 262 780 1 chr7B.!!$R1 518
13 TraesCS1B01G305000 chr7A 683510998 683511516 518 True 654.00 654 89.981000 261 761 1 chr7A.!!$R2 500
14 TraesCS1B01G305000 chr3D 49962571 49963145 574 False 643.00 643 87.241000 260 824 1 chr3D.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 341 0.176910 CCCTTCTCCTTCTTCTCCGC 59.823 60.0 0.0 0.0 0.00 5.54 F
1118 1198 0.181824 GAGTACGAGGAGGAGGAGCT 59.818 60.0 0.0 0.0 0.00 4.09 F
1701 1806 0.246635 GGACGCACATCAGTAGTGGT 59.753 55.0 0.0 0.0 37.46 4.16 F
2190 2353 1.378882 CCCCTGATGGACGCACAATG 61.379 60.0 0.0 0.0 35.39 2.82 F
3587 3795 0.469705 TGCTTTCAACCAGGCACCAT 60.470 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1326 1.591059 CGCCTCAATGAGCTCCTCG 60.591 63.158 12.15 0.0 32.35 4.63 R
2330 2493 0.543749 GAGCTGCACCCAAGACCTAT 59.456 55.000 1.02 0.0 0.00 2.57 R
3380 3588 2.149578 GCATCCCAGATGTCTGCATAC 58.850 52.381 4.48 0.0 42.47 2.39 R
3758 3966 1.694696 AGACCACCAACTTGAGAGGAC 59.305 52.381 0.00 0.0 0.00 3.85 R
5503 6164 0.038744 CCAACCAATGCTCACCCTCT 59.961 55.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 7.734865 AGGGAAAATAAGAAAAAGGAGGAATGT 59.265 33.333 0.00 0.00 0.00 2.71
65 67 5.860941 TGTGGAAATAAAAGGAAAGCACA 57.139 34.783 0.00 0.00 0.00 4.57
66 68 5.596845 TGTGGAAATAAAAGGAAAGCACAC 58.403 37.500 0.00 0.00 0.00 3.82
67 69 5.127845 TGTGGAAATAAAAGGAAAGCACACA 59.872 36.000 0.00 0.00 0.00 3.72
68 70 5.462068 GTGGAAATAAAAGGAAAGCACACAC 59.538 40.000 0.00 0.00 0.00 3.82
69 71 4.679654 GGAAATAAAAGGAAAGCACACACG 59.320 41.667 0.00 0.00 0.00 4.49
125 142 7.553044 AGGAAACAAGGAAATAACCGAGAATAG 59.447 37.037 0.00 0.00 34.73 1.73
216 237 1.063031 GCCGCATCTGAAAAAGCAAC 58.937 50.000 0.00 0.00 0.00 4.17
217 238 1.330306 CCGCATCTGAAAAAGCAACG 58.670 50.000 0.00 0.00 0.00 4.10
219 240 1.334960 CGCATCTGAAAAAGCAACGGT 60.335 47.619 0.00 0.00 0.00 4.83
221 242 3.426159 CGCATCTGAAAAAGCAACGGTAT 60.426 43.478 0.00 0.00 0.00 2.73
223 244 4.615912 GCATCTGAAAAAGCAACGGTATGT 60.616 41.667 0.00 0.00 0.00 2.29
224 245 5.460646 CATCTGAAAAAGCAACGGTATGTT 58.539 37.500 0.00 0.00 43.09 2.71
225 246 5.508200 TCTGAAAAAGCAACGGTATGTTT 57.492 34.783 0.00 0.00 39.29 2.83
226 247 5.277825 TCTGAAAAAGCAACGGTATGTTTG 58.722 37.500 0.00 0.00 39.29 2.93
227 248 4.363999 TGAAAAAGCAACGGTATGTTTGG 58.636 39.130 0.00 0.00 39.29 3.28
228 249 4.098044 TGAAAAAGCAACGGTATGTTTGGA 59.902 37.500 0.00 0.00 39.29 3.53
229 250 4.864704 AAAAGCAACGGTATGTTTGGAT 57.135 36.364 0.00 0.00 39.29 3.41
230 251 3.848272 AAGCAACGGTATGTTTGGATG 57.152 42.857 0.00 0.00 39.29 3.51
231 252 2.790433 AGCAACGGTATGTTTGGATGT 58.210 42.857 0.00 0.00 39.29 3.06
232 253 3.153919 AGCAACGGTATGTTTGGATGTT 58.846 40.909 0.00 0.00 39.29 2.71
233 254 3.057596 AGCAACGGTATGTTTGGATGTTG 60.058 43.478 0.00 0.00 39.29 3.33
234 255 3.057876 GCAACGGTATGTTTGGATGTTGA 60.058 43.478 6.39 0.00 39.29 3.18
235 256 4.380444 GCAACGGTATGTTTGGATGTTGAT 60.380 41.667 6.39 0.00 39.29 2.57
236 257 5.163703 GCAACGGTATGTTTGGATGTTGATA 60.164 40.000 6.39 0.00 39.29 2.15
237 258 6.459573 GCAACGGTATGTTTGGATGTTGATAT 60.460 38.462 6.39 0.00 39.29 1.63
238 259 7.479980 CAACGGTATGTTTGGATGTTGATATT 58.520 34.615 0.00 0.00 39.29 1.28
239 260 7.259290 ACGGTATGTTTGGATGTTGATATTC 57.741 36.000 0.00 0.00 0.00 1.75
240 261 6.826231 ACGGTATGTTTGGATGTTGATATTCA 59.174 34.615 0.00 0.00 0.00 2.57
241 262 7.012327 ACGGTATGTTTGGATGTTGATATTCAG 59.988 37.037 0.00 0.00 0.00 3.02
242 263 7.520453 CGGTATGTTTGGATGTTGATATTCAGG 60.520 40.741 0.00 0.00 0.00 3.86
243 264 5.581126 TGTTTGGATGTTGATATTCAGGC 57.419 39.130 0.00 0.00 0.00 4.85
244 265 4.402155 TGTTTGGATGTTGATATTCAGGCC 59.598 41.667 0.00 0.00 0.00 5.19
245 266 2.849942 TGGATGTTGATATTCAGGCCG 58.150 47.619 0.00 0.00 0.00 6.13
246 267 2.437651 TGGATGTTGATATTCAGGCCGA 59.562 45.455 0.00 0.00 0.00 5.54
247 268 3.070018 GGATGTTGATATTCAGGCCGAG 58.930 50.000 0.00 0.00 0.00 4.63
248 269 3.244215 GGATGTTGATATTCAGGCCGAGA 60.244 47.826 0.00 0.00 0.00 4.04
249 270 4.564406 GGATGTTGATATTCAGGCCGAGAT 60.564 45.833 0.00 0.00 0.00 2.75
250 271 5.337571 GGATGTTGATATTCAGGCCGAGATA 60.338 44.000 0.00 0.00 0.00 1.98
251 272 5.745312 TGTTGATATTCAGGCCGAGATAT 57.255 39.130 0.00 2.13 0.00 1.63
252 273 6.114187 TGTTGATATTCAGGCCGAGATATT 57.886 37.500 0.00 0.00 0.00 1.28
253 274 5.934043 TGTTGATATTCAGGCCGAGATATTG 59.066 40.000 0.00 0.00 0.00 1.90
254 275 6.166279 GTTGATATTCAGGCCGAGATATTGA 58.834 40.000 0.00 0.00 0.00 2.57
255 276 6.550938 TGATATTCAGGCCGAGATATTGAT 57.449 37.500 0.00 0.00 0.00 2.57
256 277 7.660030 TGATATTCAGGCCGAGATATTGATA 57.340 36.000 0.00 0.00 0.00 2.15
257 278 8.255111 TGATATTCAGGCCGAGATATTGATAT 57.745 34.615 0.00 0.00 0.00 1.63
258 279 8.363390 TGATATTCAGGCCGAGATATTGATATC 58.637 37.037 15.64 15.64 39.50 1.63
320 341 0.176910 CCCTTCTCCTTCTTCTCCGC 59.823 60.000 0.00 0.00 0.00 5.54
749 810 2.501316 TGTGATGGTCTGATGGTGTAGG 59.499 50.000 0.00 0.00 0.00 3.18
862 923 7.851228 TGATACTTGTGATGGTCTGATAGTTT 58.149 34.615 0.00 0.00 0.00 2.66
897 958 3.306917 TTGATGCTTGCTTGAATGTGG 57.693 42.857 0.00 0.00 0.00 4.17
900 961 3.512329 TGATGCTTGCTTGAATGTGGAAT 59.488 39.130 0.00 0.00 0.00 3.01
977 1047 3.389329 TCCATAACATCAGAAGGCTCTCC 59.611 47.826 0.00 0.00 0.00 3.71
1092 1172 0.757188 ATGGAGAAGTCGCCGAGGAT 60.757 55.000 0.00 0.00 38.78 3.24
1117 1197 1.161563 CGAGTACGAGGAGGAGGAGC 61.162 65.000 0.00 0.00 42.66 4.70
1118 1198 0.181824 GAGTACGAGGAGGAGGAGCT 59.818 60.000 0.00 0.00 0.00 4.09
1120 1200 1.104577 GTACGAGGAGGAGGAGCTGG 61.105 65.000 0.00 0.00 0.00 4.85
1121 1201 1.279749 TACGAGGAGGAGGAGCTGGA 61.280 60.000 0.00 0.00 0.00 3.86
1233 1338 4.135153 ACGCGCGAGGAGCTCATT 62.135 61.111 39.36 6.60 45.59 2.57
1507 1612 1.480212 TTGGTGACTCCGCTGGATGT 61.480 55.000 0.00 0.00 39.52 3.06
1611 1716 5.183228 ACCCATTGTTAGAATAGTTGGTCG 58.817 41.667 0.00 0.00 0.00 4.79
1617 1722 8.504005 CATTGTTAGAATAGTTGGTCGTCTTTT 58.496 33.333 0.00 0.00 0.00 2.27
1701 1806 0.246635 GGACGCACATCAGTAGTGGT 59.753 55.000 0.00 0.00 37.46 4.16
1731 1836 2.356125 CCCTGCAACTGTAAGCCTGTAT 60.356 50.000 0.00 0.00 37.60 2.29
1733 1838 4.513442 CCTGCAACTGTAAGCCTGTATTA 58.487 43.478 0.00 0.00 37.60 0.98
1738 1890 6.263392 TGCAACTGTAAGCCTGTATTAAAACA 59.737 34.615 3.19 0.00 37.60 2.83
1739 1891 6.801862 GCAACTGTAAGCCTGTATTAAAACAG 59.198 38.462 0.00 0.00 41.46 3.16
1749 1901 8.100791 AGCCTGTATTAAAACAGTACAATCAGA 58.899 33.333 0.00 0.00 44.45 3.27
1769 1921 4.811557 CAGAATGTAGCCACCTTAAGTAGC 59.188 45.833 0.97 1.25 32.62 3.58
1788 1940 1.755380 GCCCAGATAGTAACACGAGGT 59.245 52.381 0.00 0.00 0.00 3.85
1789 1941 2.954318 GCCCAGATAGTAACACGAGGTA 59.046 50.000 0.00 0.00 0.00 3.08
1790 1942 3.004524 GCCCAGATAGTAACACGAGGTAG 59.995 52.174 0.00 0.00 0.00 3.18
1791 1943 4.458397 CCCAGATAGTAACACGAGGTAGA 58.542 47.826 0.00 0.00 0.00 2.59
1792 1944 4.275443 CCCAGATAGTAACACGAGGTAGAC 59.725 50.000 0.00 0.00 0.00 2.59
1793 1945 5.124645 CCAGATAGTAACACGAGGTAGACT 58.875 45.833 0.00 0.00 32.33 3.24
1794 1946 5.589452 CCAGATAGTAACACGAGGTAGACTT 59.411 44.000 0.00 0.00 30.69 3.01
1796 1948 7.041916 CCAGATAGTAACACGAGGTAGACTTAG 60.042 44.444 0.00 0.00 30.69 2.18
1797 1949 4.961435 AGTAACACGAGGTAGACTTAGC 57.039 45.455 0.00 0.00 0.00 3.09
1799 1951 3.851976 AACACGAGGTAGACTTAGCTG 57.148 47.619 0.00 0.00 37.73 4.24
1800 1952 2.093106 ACACGAGGTAGACTTAGCTGG 58.907 52.381 0.00 0.00 37.73 4.85
1801 1953 2.290768 ACACGAGGTAGACTTAGCTGGA 60.291 50.000 0.00 0.00 37.73 3.86
1802 1954 2.952978 CACGAGGTAGACTTAGCTGGAT 59.047 50.000 0.00 0.00 37.73 3.41
1803 1955 2.952978 ACGAGGTAGACTTAGCTGGATG 59.047 50.000 0.00 0.00 37.73 3.51
1970 2125 6.620877 ACACTTAGATTGTCCTTGGACATA 57.379 37.500 21.39 13.31 34.76 2.29
2012 2175 8.346300 CGATCTCAACTCATTAGAGCTAAACTA 58.654 37.037 0.00 0.00 46.09 2.24
2190 2353 1.378882 CCCCTGATGGACGCACAATG 61.379 60.000 0.00 0.00 35.39 2.82
2232 2395 9.780186 AATTAAGCTTTCTACATCCTACATACC 57.220 33.333 3.20 0.00 0.00 2.73
2236 2399 8.128322 AGCTTTCTACATCCTACATACCATAG 57.872 38.462 0.00 0.00 0.00 2.23
2237 2400 7.730784 AGCTTTCTACATCCTACATACCATAGT 59.269 37.037 0.00 0.00 0.00 2.12
2238 2401 9.021807 GCTTTCTACATCCTACATACCATAGTA 57.978 37.037 0.00 0.00 0.00 1.82
2287 2450 1.970640 GGACTGAATTTTGTGGCCCTT 59.029 47.619 0.00 0.00 0.00 3.95
2330 2493 6.215431 CAGGAATAGACAATGGGGATATGGTA 59.785 42.308 0.00 0.00 0.00 3.25
2620 2796 4.671831 TGCCCATAAGAAAATTGACCTGA 58.328 39.130 0.00 0.00 0.00 3.86
2793 2970 8.109705 TCAACATGCAACTTTCACAACTATAT 57.890 30.769 0.00 0.00 0.00 0.86
2916 3107 6.916440 ACTTTTTCAGTACGGAACAAAAAGT 58.084 32.000 21.33 21.33 43.01 2.66
2936 3127 5.629079 AGTTGCATTTACTAAGGTTCAGC 57.371 39.130 0.00 0.00 0.00 4.26
3016 3207 3.542712 AAGTGAACGCATTGTCATGTC 57.457 42.857 0.00 0.00 32.28 3.06
3057 3248 3.165875 CTGTTGAGAAGTACTCCCTCCA 58.834 50.000 17.51 10.96 44.34 3.86
3078 3273 7.169982 CCTCCATAAAGAAGTATAAGAGCGTTG 59.830 40.741 0.00 0.00 0.00 4.10
3380 3588 1.928868 AGTGGAAGAATTTGGCTGGG 58.071 50.000 0.00 0.00 0.00 4.45
3587 3795 0.469705 TGCTTTCAACCAGGCACCAT 60.470 50.000 0.00 0.00 0.00 3.55
3638 3846 1.215647 GACTGATCCGTCACGCCTT 59.784 57.895 11.95 0.00 34.11 4.35
3758 3966 6.369059 ACAAAAGGATATGCATTTCTCTCG 57.631 37.500 15.48 5.27 28.89 4.04
3826 4034 0.886490 CGCCAGGTCTGTTTTCAGCT 60.886 55.000 0.00 0.00 46.59 4.24
3867 4238 5.122239 TCACGATTTCTTTAGCACCAATCTG 59.878 40.000 0.00 0.00 0.00 2.90
3925 4296 9.265901 CTCACAATAATGGAGAAGTATACTTGG 57.734 37.037 22.68 0.00 36.11 3.61
3927 4298 6.706270 ACAATAATGGAGAAGTATACTTGGCG 59.294 38.462 22.68 3.10 36.11 5.69
3933 4304 3.722147 AGAAGTATACTTGGCGCATCTG 58.278 45.455 22.68 0.00 36.11 2.90
4035 4409 0.319900 TCTGGAACGCTGCTCTCAAC 60.320 55.000 0.00 0.00 0.00 3.18
4251 4625 1.736681 GAAGATGGTTCTGCTGCTGTC 59.263 52.381 0.00 0.00 30.72 3.51
4491 4865 1.877443 CCAACTAAACTGTTCCGGGTG 59.123 52.381 0.00 0.00 0.00 4.61
4501 4875 2.118076 TCCGGGTGGAGGTACGTT 59.882 61.111 0.00 0.00 40.17 3.99
4502 4876 1.533753 TCCGGGTGGAGGTACGTTT 60.534 57.895 0.00 0.00 40.17 3.60
4503 4877 1.079612 CCGGGTGGAGGTACGTTTC 60.080 63.158 0.00 0.00 37.49 2.78
4504 4878 1.444895 CGGGTGGAGGTACGTTTCG 60.445 63.158 0.00 0.00 0.00 3.46
4505 4879 1.865788 CGGGTGGAGGTACGTTTCGA 61.866 60.000 0.00 0.00 0.00 3.71
4506 4880 0.533951 GGGTGGAGGTACGTTTCGAT 59.466 55.000 0.00 0.00 0.00 3.59
4507 4881 1.636988 GGTGGAGGTACGTTTCGATG 58.363 55.000 0.00 0.00 0.00 3.84
4508 4882 1.636988 GTGGAGGTACGTTTCGATGG 58.363 55.000 0.00 0.00 0.00 3.51
4509 4883 1.067354 GTGGAGGTACGTTTCGATGGT 60.067 52.381 0.00 0.00 0.00 3.55
4510 4884 1.203052 TGGAGGTACGTTTCGATGGTC 59.797 52.381 0.00 0.00 0.00 4.02
4511 4885 1.470458 GGAGGTACGTTTCGATGGTCC 60.470 57.143 0.00 0.00 0.00 4.46
4512 4886 1.475682 GAGGTACGTTTCGATGGTCCT 59.524 52.381 0.00 0.00 0.00 3.85
4513 4887 1.475682 AGGTACGTTTCGATGGTCCTC 59.524 52.381 0.00 0.00 0.00 3.71
4541 4931 3.071874 TCCTTTGCACCAGATTACAGG 57.928 47.619 0.00 0.00 0.00 4.00
4546 4936 3.719268 TGCACCAGATTACAGGTCATT 57.281 42.857 0.00 0.00 33.63 2.57
4549 4939 3.758554 GCACCAGATTACAGGTCATTTGT 59.241 43.478 0.00 0.00 33.63 2.83
4574 4970 1.946283 GCCTGCCTCCTGACTAACAAC 60.946 57.143 0.00 0.00 0.00 3.32
4575 4971 1.347707 CCTGCCTCCTGACTAACAACA 59.652 52.381 0.00 0.00 0.00 3.33
4576 4972 2.224523 CCTGCCTCCTGACTAACAACAA 60.225 50.000 0.00 0.00 0.00 2.83
4577 4973 3.476552 CTGCCTCCTGACTAACAACAAA 58.523 45.455 0.00 0.00 0.00 2.83
4578 4974 3.211045 TGCCTCCTGACTAACAACAAAC 58.789 45.455 0.00 0.00 0.00 2.93
4580 4976 3.883489 GCCTCCTGACTAACAACAAACTT 59.117 43.478 0.00 0.00 0.00 2.66
4581 4977 4.261197 GCCTCCTGACTAACAACAAACTTG 60.261 45.833 0.00 0.00 0.00 3.16
4708 5109 2.263741 GCCACCAAGTGTCCTGCAG 61.264 63.158 6.78 6.78 0.00 4.41
4711 5112 1.069765 ACCAAGTGTCCTGCAGTCG 59.930 57.895 13.81 0.00 0.00 4.18
4741 5179 4.437682 TCCCTTCTGCTCTTTTCTTTCA 57.562 40.909 0.00 0.00 0.00 2.69
4829 5274 3.795623 ATATCTTACGTGCTGTTCGGT 57.204 42.857 0.00 0.00 0.00 4.69
4830 5275 2.450609 ATCTTACGTGCTGTTCGGTT 57.549 45.000 0.00 0.00 0.00 4.44
4902 5347 1.552792 TGATTGTCGTGGACATGCCTA 59.447 47.619 0.00 0.00 42.40 3.93
5037 5508 0.179166 CAAGCGTTTGTGTGTGCTGT 60.179 50.000 3.53 0.00 37.81 4.40
5079 5550 4.759516 TTCAAACGCAGAAAATACCTCC 57.240 40.909 0.00 0.00 0.00 4.30
5100 5571 4.540735 GGTACCCGGGCATGGACG 62.541 72.222 24.08 0.00 0.00 4.79
5213 5708 2.519622 GGCTGGGCTTTTGGGCTTT 61.520 57.895 0.00 0.00 40.65 3.51
5229 5724 1.812235 CTTTGGGCTTGATTTTGGGC 58.188 50.000 0.00 0.00 0.00 5.36
5230 5725 0.399833 TTTGGGCTTGATTTTGGGCC 59.600 50.000 0.00 0.00 44.50 5.80
5263 5758 5.682943 TTGAAAACAGTGAGTATTTCGGG 57.317 39.130 0.00 0.00 33.65 5.14
5267 5762 2.973945 ACAGTGAGTATTTCGGGCTTC 58.026 47.619 0.00 0.00 0.00 3.86
5301 5816 0.250381 TTTTACAAGCTCGGCCCGAA 60.250 50.000 7.50 0.00 34.74 4.30
5302 5817 0.250381 TTTACAAGCTCGGCCCGAAA 60.250 50.000 7.50 0.00 34.74 3.46
5303 5818 0.952010 TTACAAGCTCGGCCCGAAAC 60.952 55.000 7.50 1.94 34.74 2.78
5304 5819 2.791501 TACAAGCTCGGCCCGAAACC 62.792 60.000 7.50 0.00 34.74 3.27
5305 5820 4.717313 AAGCTCGGCCCGAAACCC 62.717 66.667 7.50 0.00 34.74 4.11
5325 5948 2.262915 CTTCTCTGGCGCGTCCTT 59.737 61.111 8.89 0.00 35.26 3.36
5360 6021 3.901797 CTGTGGGGGTTGCGTCCTC 62.902 68.421 0.00 0.00 0.00 3.71
5373 6034 3.331150 TGCGTCCTCGTGAAACATAAAT 58.669 40.909 0.00 0.00 39.49 1.40
5392 6053 1.971149 TGGTGATGGAGAAGATGGGT 58.029 50.000 0.00 0.00 0.00 4.51
5425 6086 0.754957 CACAGTGGCAAAAGGGGACA 60.755 55.000 0.00 0.00 0.00 4.02
5428 6089 1.527380 GTGGCAAAAGGGGACACGA 60.527 57.895 0.00 0.00 34.04 4.35
5439 6100 1.596934 GGACACGAGGGCTCATTGA 59.403 57.895 0.00 0.00 0.00 2.57
5445 6106 0.179100 CGAGGGCTCATTGACGACAT 60.179 55.000 0.00 0.00 0.00 3.06
5450 6111 2.083774 GGCTCATTGACGACATTGGAA 58.916 47.619 9.29 0.00 0.00 3.53
5456 6117 1.075542 TGACGACATTGGAATCGCAC 58.924 50.000 0.00 0.00 42.12 5.34
5460 6121 1.643868 GACATTGGAATCGCACGCCA 61.644 55.000 0.00 0.00 0.00 5.69
5461 6122 1.063006 CATTGGAATCGCACGCCAG 59.937 57.895 0.00 0.00 32.47 4.85
5462 6123 1.078497 ATTGGAATCGCACGCCAGA 60.078 52.632 0.00 0.00 32.47 3.86
5463 6124 1.091771 ATTGGAATCGCACGCCAGAG 61.092 55.000 0.00 0.00 32.47 3.35
5464 6125 3.567797 GGAATCGCACGCCAGAGC 61.568 66.667 0.00 0.00 0.00 4.09
5465 6126 2.510238 GAATCGCACGCCAGAGCT 60.510 61.111 0.00 0.00 36.60 4.09
5466 6127 2.806856 GAATCGCACGCCAGAGCTG 61.807 63.158 0.00 0.00 36.60 4.24
5475 6136 2.360852 CCAGAGCTGGGGCAGTTG 60.361 66.667 8.69 0.00 46.81 3.16
5476 6137 2.752358 CAGAGCTGGGGCAGTTGA 59.248 61.111 0.00 0.00 41.70 3.18
5477 6138 1.376942 CAGAGCTGGGGCAGTTGAG 60.377 63.158 0.00 0.00 41.70 3.02
5478 6139 2.749441 GAGCTGGGGCAGTTGAGC 60.749 66.667 0.00 0.00 41.70 4.26
5479 6140 3.255397 AGCTGGGGCAGTTGAGCT 61.255 61.111 0.00 0.00 41.70 4.09
5480 6141 2.282745 GCTGGGGCAGTTGAGCTT 60.283 61.111 0.00 0.00 38.54 3.74
5481 6142 1.002134 GCTGGGGCAGTTGAGCTTA 60.002 57.895 0.00 0.00 38.54 3.09
5482 6143 0.609131 GCTGGGGCAGTTGAGCTTAA 60.609 55.000 0.00 0.00 38.54 1.85
5483 6144 1.957113 GCTGGGGCAGTTGAGCTTAAT 60.957 52.381 0.00 0.00 38.54 1.40
5484 6145 2.450476 CTGGGGCAGTTGAGCTTAATT 58.550 47.619 0.00 0.00 34.17 1.40
5485 6146 2.424956 CTGGGGCAGTTGAGCTTAATTC 59.575 50.000 0.00 0.00 34.17 2.17
5486 6147 1.401905 GGGGCAGTTGAGCTTAATTCG 59.598 52.381 0.00 0.00 34.17 3.34
5487 6148 2.356135 GGGCAGTTGAGCTTAATTCGA 58.644 47.619 0.00 0.00 34.17 3.71
5488 6149 2.352960 GGGCAGTTGAGCTTAATTCGAG 59.647 50.000 0.00 0.00 34.17 4.04
5489 6150 3.003480 GGCAGTTGAGCTTAATTCGAGT 58.997 45.455 0.00 0.00 34.17 4.18
5490 6151 3.181516 GGCAGTTGAGCTTAATTCGAGTG 60.182 47.826 0.00 7.41 34.06 3.51
5491 6152 3.181516 GCAGTTGAGCTTAATTCGAGTGG 60.182 47.826 0.00 0.00 32.35 4.00
5492 6153 3.003480 AGTTGAGCTTAATTCGAGTGGC 58.997 45.455 0.00 0.00 0.00 5.01
5493 6154 2.024176 TGAGCTTAATTCGAGTGGCC 57.976 50.000 0.00 0.00 0.00 5.36
5494 6155 1.555075 TGAGCTTAATTCGAGTGGCCT 59.445 47.619 3.32 0.00 0.00 5.19
5495 6156 1.936547 GAGCTTAATTCGAGTGGCCTG 59.063 52.381 3.32 0.00 0.00 4.85
5496 6157 1.017387 GCTTAATTCGAGTGGCCTGG 58.983 55.000 3.32 0.00 0.00 4.45
5497 6158 1.017387 CTTAATTCGAGTGGCCTGGC 58.983 55.000 11.05 11.05 0.00 4.85
5498 6159 0.742990 TTAATTCGAGTGGCCTGGCG 60.743 55.000 13.40 4.69 0.00 5.69
5499 6160 2.587322 TAATTCGAGTGGCCTGGCGG 62.587 60.000 13.40 0.00 0.00 6.13
5510 6171 4.087892 CTGGCGGTGGAGAGGGTG 62.088 72.222 0.00 0.00 0.00 4.61
5511 6172 4.631740 TGGCGGTGGAGAGGGTGA 62.632 66.667 0.00 0.00 0.00 4.02
5512 6173 3.775654 GGCGGTGGAGAGGGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
5513 6174 4.459089 GCGGTGGAGAGGGTGAGC 62.459 72.222 0.00 0.00 0.00 4.26
5514 6175 2.997315 CGGTGGAGAGGGTGAGCA 60.997 66.667 0.00 0.00 0.00 4.26
5515 6176 2.362369 CGGTGGAGAGGGTGAGCAT 61.362 63.158 0.00 0.00 0.00 3.79
5516 6177 1.903877 CGGTGGAGAGGGTGAGCATT 61.904 60.000 0.00 0.00 0.00 3.56
5517 6178 0.393537 GGTGGAGAGGGTGAGCATTG 60.394 60.000 0.00 0.00 0.00 2.82
5518 6179 0.393537 GTGGAGAGGGTGAGCATTGG 60.394 60.000 0.00 0.00 0.00 3.16
5519 6180 0.842030 TGGAGAGGGTGAGCATTGGT 60.842 55.000 0.00 0.00 0.00 3.67
5520 6181 0.329596 GGAGAGGGTGAGCATTGGTT 59.670 55.000 0.00 0.00 0.00 3.67
5521 6182 1.457346 GAGAGGGTGAGCATTGGTTG 58.543 55.000 0.00 0.00 0.00 3.77
5522 6183 0.038744 AGAGGGTGAGCATTGGTTGG 59.961 55.000 0.00 0.00 0.00 3.77
5523 6184 0.967380 GAGGGTGAGCATTGGTTGGG 60.967 60.000 0.00 0.00 0.00 4.12
5524 6185 1.076549 GGGTGAGCATTGGTTGGGA 59.923 57.895 0.00 0.00 0.00 4.37
5525 6186 0.967380 GGGTGAGCATTGGTTGGGAG 60.967 60.000 0.00 0.00 0.00 4.30
5526 6187 0.251341 GGTGAGCATTGGTTGGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
5527 6188 1.168714 GTGAGCATTGGTTGGGAGTC 58.831 55.000 0.00 0.00 0.00 3.36
5528 6189 0.321564 TGAGCATTGGTTGGGAGTCG 60.322 55.000 0.00 0.00 0.00 4.18
5529 6190 1.002134 AGCATTGGTTGGGAGTCGG 60.002 57.895 0.00 0.00 0.00 4.79
5530 6191 1.002624 GCATTGGTTGGGAGTCGGA 60.003 57.895 0.00 0.00 0.00 4.55
5531 6192 1.026718 GCATTGGTTGGGAGTCGGAG 61.027 60.000 0.00 0.00 0.00 4.63
5532 6193 0.613260 CATTGGTTGGGAGTCGGAGA 59.387 55.000 0.00 0.00 0.00 3.71
5533 6194 0.905357 ATTGGTTGGGAGTCGGAGAG 59.095 55.000 0.00 0.00 36.95 3.20
5534 6195 1.192146 TTGGTTGGGAGTCGGAGAGG 61.192 60.000 0.00 0.00 36.95 3.69
5535 6196 2.359967 GGTTGGGAGTCGGAGAGGG 61.360 68.421 0.00 0.00 36.95 4.30
5536 6197 2.038975 TTGGGAGTCGGAGAGGGG 59.961 66.667 0.00 0.00 36.95 4.79
5537 6198 2.865147 TTGGGAGTCGGAGAGGGGT 61.865 63.158 0.00 0.00 36.95 4.95
5538 6199 2.760385 GGGAGTCGGAGAGGGGTG 60.760 72.222 0.00 0.00 36.95 4.61
5539 6200 2.037527 GGAGTCGGAGAGGGGTGT 59.962 66.667 0.00 0.00 36.95 4.16
5540 6201 1.609794 GGAGTCGGAGAGGGGTGTT 60.610 63.158 0.00 0.00 36.95 3.32
5541 6202 0.324091 GGAGTCGGAGAGGGGTGTTA 60.324 60.000 0.00 0.00 36.95 2.41
5542 6203 1.104630 GAGTCGGAGAGGGGTGTTAG 58.895 60.000 0.00 0.00 36.95 2.34
5543 6204 0.324460 AGTCGGAGAGGGGTGTTAGG 60.324 60.000 0.00 0.00 36.95 2.69
5544 6205 1.001248 TCGGAGAGGGGTGTTAGGG 59.999 63.158 0.00 0.00 0.00 3.53
5545 6206 2.064581 CGGAGAGGGGTGTTAGGGG 61.065 68.421 0.00 0.00 0.00 4.79
5546 6207 1.693103 GGAGAGGGGTGTTAGGGGG 60.693 68.421 0.00 0.00 0.00 5.40
5547 6208 1.082392 GAGAGGGGTGTTAGGGGGT 59.918 63.158 0.00 0.00 0.00 4.95
5548 6209 0.549413 GAGAGGGGTGTTAGGGGGTT 60.549 60.000 0.00 0.00 0.00 4.11
5549 6210 0.549413 AGAGGGGTGTTAGGGGGTTC 60.549 60.000 0.00 0.00 0.00 3.62
5550 6211 0.549413 GAGGGGTGTTAGGGGGTTCT 60.549 60.000 0.00 0.00 0.00 3.01
5551 6212 0.801574 AGGGGTGTTAGGGGGTTCTA 59.198 55.000 0.00 0.00 0.00 2.10
5552 6213 1.210538 GGGGTGTTAGGGGGTTCTAG 58.789 60.000 0.00 0.00 0.00 2.43
5553 6214 1.556475 GGGGTGTTAGGGGGTTCTAGT 60.556 57.143 0.00 0.00 0.00 2.57
5554 6215 2.293118 GGGGTGTTAGGGGGTTCTAGTA 60.293 54.545 0.00 0.00 0.00 1.82
5555 6216 3.036819 GGGTGTTAGGGGGTTCTAGTAG 58.963 54.545 0.00 0.00 0.00 2.57
5556 6217 3.036819 GGTGTTAGGGGGTTCTAGTAGG 58.963 54.545 0.00 0.00 0.00 3.18
5557 6218 3.036819 GTGTTAGGGGGTTCTAGTAGGG 58.963 54.545 0.00 0.00 0.00 3.53
5558 6219 2.022722 TGTTAGGGGGTTCTAGTAGGGG 60.023 54.545 0.00 0.00 0.00 4.79
5559 6220 1.248227 TAGGGGGTTCTAGTAGGGGG 58.752 60.000 0.00 0.00 0.00 5.40
5599 6260 4.272100 TCGTGGCCGACTTTAAGC 57.728 55.556 0.00 0.00 38.40 3.09
5600 6261 1.735198 TCGTGGCCGACTTTAAGCG 60.735 57.895 0.00 0.00 38.40 4.68
5601 6262 2.025418 CGTGGCCGACTTTAAGCGT 61.025 57.895 0.00 0.00 35.63 5.07
5602 6263 0.733566 CGTGGCCGACTTTAAGCGTA 60.734 55.000 0.00 0.00 35.63 4.42
5603 6264 1.648504 GTGGCCGACTTTAAGCGTAT 58.351 50.000 0.00 0.00 0.00 3.06
5604 6265 1.591619 GTGGCCGACTTTAAGCGTATC 59.408 52.381 0.00 0.00 0.00 2.24
5605 6266 1.479323 TGGCCGACTTTAAGCGTATCT 59.521 47.619 0.00 0.00 0.00 1.98
5606 6267 2.125685 GGCCGACTTTAAGCGTATCTC 58.874 52.381 0.00 0.00 0.00 2.75
5607 6268 2.223758 GGCCGACTTTAAGCGTATCTCT 60.224 50.000 0.00 0.00 0.00 3.10
5608 6269 2.789893 GCCGACTTTAAGCGTATCTCTG 59.210 50.000 7.68 0.00 0.00 3.35
5609 6270 3.372954 CCGACTTTAAGCGTATCTCTGG 58.627 50.000 7.68 0.00 0.00 3.86
5610 6271 3.066342 CCGACTTTAAGCGTATCTCTGGA 59.934 47.826 7.68 0.00 0.00 3.86
5611 6272 4.261656 CCGACTTTAAGCGTATCTCTGGAT 60.262 45.833 7.68 0.00 36.07 3.41
5612 6273 4.912766 CGACTTTAAGCGTATCTCTGGATC 59.087 45.833 0.00 0.00 33.71 3.36
5613 6274 4.861210 ACTTTAAGCGTATCTCTGGATCG 58.139 43.478 0.00 0.00 33.71 3.69
5614 6275 4.579340 ACTTTAAGCGTATCTCTGGATCGA 59.421 41.667 0.00 0.00 33.71 3.59
5615 6276 4.485024 TTAAGCGTATCTCTGGATCGAC 57.515 45.455 0.00 0.00 33.71 4.20
5616 6277 2.264005 AGCGTATCTCTGGATCGACT 57.736 50.000 0.00 0.00 33.71 4.18
5617 6278 1.876799 AGCGTATCTCTGGATCGACTG 59.123 52.381 0.00 0.00 33.71 3.51
5618 6279 1.874231 GCGTATCTCTGGATCGACTGA 59.126 52.381 0.00 0.00 33.71 3.41
5619 6280 2.290916 GCGTATCTCTGGATCGACTGAA 59.709 50.000 0.00 0.00 33.71 3.02
5620 6281 3.057876 GCGTATCTCTGGATCGACTGAAT 60.058 47.826 0.00 0.00 33.71 2.57
5621 6282 4.154375 GCGTATCTCTGGATCGACTGAATA 59.846 45.833 0.00 0.00 33.71 1.75
5622 6283 5.163703 GCGTATCTCTGGATCGACTGAATAT 60.164 44.000 0.00 0.00 33.71 1.28
5623 6284 6.037281 GCGTATCTCTGGATCGACTGAATATA 59.963 42.308 0.00 0.00 33.71 0.86
5624 6285 7.414208 GCGTATCTCTGGATCGACTGAATATAA 60.414 40.741 0.00 0.00 33.71 0.98
5625 6286 7.906010 CGTATCTCTGGATCGACTGAATATAAC 59.094 40.741 0.00 0.00 33.71 1.89
5626 6287 8.952278 GTATCTCTGGATCGACTGAATATAACT 58.048 37.037 0.00 0.00 33.71 2.24
5627 6288 7.441890 TCTCTGGATCGACTGAATATAACTC 57.558 40.000 0.00 0.00 0.00 3.01
5628 6289 7.227873 TCTCTGGATCGACTGAATATAACTCT 58.772 38.462 0.00 0.00 0.00 3.24
5629 6290 7.721842 TCTCTGGATCGACTGAATATAACTCTT 59.278 37.037 0.00 0.00 0.00 2.85
5630 6291 8.239038 TCTGGATCGACTGAATATAACTCTTT 57.761 34.615 0.00 0.00 0.00 2.52
5631 6292 8.696374 TCTGGATCGACTGAATATAACTCTTTT 58.304 33.333 0.00 0.00 0.00 2.27
5632 6293 9.967346 CTGGATCGACTGAATATAACTCTTTTA 57.033 33.333 0.00 0.00 0.00 1.52
5636 6297 9.765795 ATCGACTGAATATAACTCTTTTAAGGG 57.234 33.333 0.00 0.00 0.00 3.95
5637 6298 8.755977 TCGACTGAATATAACTCTTTTAAGGGT 58.244 33.333 0.00 0.00 42.85 4.34
5638 6299 8.818057 CGACTGAATATAACTCTTTTAAGGGTG 58.182 37.037 0.00 0.00 39.26 4.61
5639 6300 9.886132 GACTGAATATAACTCTTTTAAGGGTGA 57.114 33.333 0.00 0.00 39.26 4.02
5644 6305 9.628500 AATATAACTCTTTTAAGGGTGATGTCC 57.372 33.333 3.03 0.00 39.26 4.02
5645 6306 5.584551 AACTCTTTTAAGGGTGATGTCCT 57.415 39.130 0.00 0.00 39.26 3.85
5646 6307 5.167303 ACTCTTTTAAGGGTGATGTCCTC 57.833 43.478 0.00 0.00 38.59 3.71
5647 6308 4.184629 CTCTTTTAAGGGTGATGTCCTCG 58.815 47.826 0.00 0.00 32.59 4.63
5648 6309 3.055385 TCTTTTAAGGGTGATGTCCTCGG 60.055 47.826 0.00 0.00 32.59 4.63
5649 6310 2.241281 TTAAGGGTGATGTCCTCGGA 57.759 50.000 0.00 0.00 32.59 4.55
5650 6311 2.241281 TAAGGGTGATGTCCTCGGAA 57.759 50.000 0.00 0.00 32.59 4.30
5651 6312 0.613777 AAGGGTGATGTCCTCGGAAC 59.386 55.000 0.00 0.00 32.59 3.62
5652 6313 1.221021 GGGTGATGTCCTCGGAACC 59.779 63.158 0.00 0.00 0.00 3.62
5653 6314 1.550130 GGGTGATGTCCTCGGAACCA 61.550 60.000 6.82 0.00 0.00 3.67
5654 6315 0.391263 GGTGATGTCCTCGGAACCAC 60.391 60.000 0.69 3.38 0.00 4.16
5655 6316 0.608640 GTGATGTCCTCGGAACCACT 59.391 55.000 0.00 0.00 0.00 4.00
5656 6317 0.608130 TGATGTCCTCGGAACCACTG 59.392 55.000 0.00 0.00 0.00 3.66
5657 6318 0.895530 GATGTCCTCGGAACCACTGA 59.104 55.000 0.00 0.00 0.00 3.41
5658 6319 1.275291 GATGTCCTCGGAACCACTGAA 59.725 52.381 0.00 0.00 33.09 3.02
5659 6320 0.391597 TGTCCTCGGAACCACTGAAC 59.608 55.000 0.00 0.00 33.09 3.18
5660 6321 0.320508 GTCCTCGGAACCACTGAACC 60.321 60.000 0.00 0.00 33.09 3.62
5661 6322 0.761323 TCCTCGGAACCACTGAACCA 60.761 55.000 0.00 0.00 33.09 3.67
5662 6323 0.602905 CCTCGGAACCACTGAACCAC 60.603 60.000 0.00 0.00 33.09 4.16
5663 6324 0.105964 CTCGGAACCACTGAACCACA 59.894 55.000 0.00 0.00 33.09 4.17
5664 6325 0.762418 TCGGAACCACTGAACCACAT 59.238 50.000 0.00 0.00 0.00 3.21
5665 6326 0.874390 CGGAACCACTGAACCACATG 59.126 55.000 0.00 0.00 0.00 3.21
5666 6327 1.542328 CGGAACCACTGAACCACATGA 60.542 52.381 0.00 0.00 0.00 3.07
5667 6328 2.154462 GGAACCACTGAACCACATGAG 58.846 52.381 0.00 0.00 0.00 2.90
5668 6329 2.487265 GGAACCACTGAACCACATGAGT 60.487 50.000 0.00 0.00 0.00 3.41
5669 6330 3.214328 GAACCACTGAACCACATGAGTT 58.786 45.455 0.00 2.20 0.00 3.01
5670 6331 2.575532 ACCACTGAACCACATGAGTTG 58.424 47.619 0.00 0.00 0.00 3.16
5671 6332 1.881973 CCACTGAACCACATGAGTTGG 59.118 52.381 0.00 0.00 0.00 3.77
5672 6333 2.575532 CACTGAACCACATGAGTTGGT 58.424 47.619 0.00 0.00 37.57 3.67
5674 6335 4.133820 CACTGAACCACATGAGTTGGTTA 58.866 43.478 16.77 7.20 44.94 2.85
5675 6336 4.214119 CACTGAACCACATGAGTTGGTTAG 59.786 45.833 16.77 15.46 44.94 2.34
5676 6337 4.102524 ACTGAACCACATGAGTTGGTTAGA 59.897 41.667 16.77 7.98 44.94 2.10
5677 6338 5.221925 ACTGAACCACATGAGTTGGTTAGAT 60.222 40.000 16.77 5.18 44.94 1.98
5678 6339 5.003160 TGAACCACATGAGTTGGTTAGATG 58.997 41.667 16.77 0.00 44.94 2.90
5679 6340 3.347216 ACCACATGAGTTGGTTAGATGC 58.653 45.455 0.00 0.00 30.72 3.91
5680 6341 2.352651 CCACATGAGTTGGTTAGATGCG 59.647 50.000 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 5.596845 GTGTGTGCTTTCCTTTTATTTCCA 58.403 37.500 0.00 0.00 0.00 3.53
65 67 0.458669 AAGTCTTCACCGTGTCGTGT 59.541 50.000 0.00 0.00 35.18 4.49
66 68 0.852777 CAAGTCTTCACCGTGTCGTG 59.147 55.000 0.00 0.00 34.93 4.35
67 69 0.458669 ACAAGTCTTCACCGTGTCGT 59.541 50.000 0.00 0.00 0.00 4.34
68 70 2.031420 TCTACAAGTCTTCACCGTGTCG 60.031 50.000 0.00 0.00 0.00 4.35
69 71 3.004524 ACTCTACAAGTCTTCACCGTGTC 59.995 47.826 0.00 0.00 30.02 3.67
125 142 6.113411 CGGAACCCCAATATATATGGTCTTC 58.887 44.000 4.21 10.12 36.14 2.87
216 237 7.258022 TGAATATCAACATCCAAACATACCG 57.742 36.000 0.00 0.00 0.00 4.02
217 238 7.651808 CCTGAATATCAACATCCAAACATACC 58.348 38.462 0.00 0.00 0.00 2.73
219 240 6.265196 GGCCTGAATATCAACATCCAAACATA 59.735 38.462 0.00 0.00 0.00 2.29
221 242 4.402155 GGCCTGAATATCAACATCCAAACA 59.598 41.667 0.00 0.00 0.00 2.83
223 244 3.631686 CGGCCTGAATATCAACATCCAAA 59.368 43.478 0.00 0.00 0.00 3.28
224 245 3.118075 TCGGCCTGAATATCAACATCCAA 60.118 43.478 0.00 0.00 0.00 3.53
225 246 2.437651 TCGGCCTGAATATCAACATCCA 59.562 45.455 0.00 0.00 0.00 3.41
226 247 3.070018 CTCGGCCTGAATATCAACATCC 58.930 50.000 0.00 0.00 0.00 3.51
227 248 3.995199 TCTCGGCCTGAATATCAACATC 58.005 45.455 0.00 0.00 0.00 3.06
228 249 4.630644 ATCTCGGCCTGAATATCAACAT 57.369 40.909 0.00 0.00 0.00 2.71
229 250 5.745312 ATATCTCGGCCTGAATATCAACA 57.255 39.130 0.00 0.00 0.00 3.33
230 251 6.166279 TCAATATCTCGGCCTGAATATCAAC 58.834 40.000 0.00 0.00 0.00 3.18
231 252 6.358974 TCAATATCTCGGCCTGAATATCAA 57.641 37.500 0.00 0.00 0.00 2.57
232 253 6.550938 ATCAATATCTCGGCCTGAATATCA 57.449 37.500 0.00 0.00 0.00 2.15
233 254 8.584157 AGATATCAATATCTCGGCCTGAATATC 58.416 37.037 5.32 8.27 44.58 1.63
234 255 8.366401 CAGATATCAATATCTCGGCCTGAATAT 58.634 37.037 9.14 0.00 45.70 1.28
235 256 7.685398 GCAGATATCAATATCTCGGCCTGAATA 60.685 40.741 9.14 0.00 45.70 1.75
236 257 6.580788 CAGATATCAATATCTCGGCCTGAAT 58.419 40.000 9.14 0.00 45.70 2.57
237 258 5.625426 GCAGATATCAATATCTCGGCCTGAA 60.625 44.000 9.14 0.00 45.70 3.02
238 259 4.142071 GCAGATATCAATATCTCGGCCTGA 60.142 45.833 9.14 0.00 45.70 3.86
239 260 4.118410 GCAGATATCAATATCTCGGCCTG 58.882 47.826 9.14 0.00 45.70 4.85
240 261 3.181482 CGCAGATATCAATATCTCGGCCT 60.181 47.826 9.14 0.00 45.70 5.19
241 262 3.119291 CGCAGATATCAATATCTCGGCC 58.881 50.000 9.14 0.00 45.70 6.13
242 263 3.794028 GTCGCAGATATCAATATCTCGGC 59.206 47.826 19.74 17.27 45.70 5.54
243 264 4.031691 CGTCGCAGATATCAATATCTCGG 58.968 47.826 19.74 12.23 45.70 4.63
244 265 3.480308 GCGTCGCAGATATCAATATCTCG 59.520 47.826 13.44 13.89 45.70 4.04
245 266 4.415735 TGCGTCGCAGATATCAATATCTC 58.584 43.478 17.58 5.07 45.70 2.75
320 341 1.791103 GATCTGTCGGCCGGAGAGAG 61.791 65.000 27.83 14.47 46.93 3.20
690 746 6.635030 ATGGTGTTTTCTTCAGTTACCTTC 57.365 37.500 0.00 0.00 0.00 3.46
749 810 7.442062 ACCATCACAAAAATCAAAAGAACATCC 59.558 33.333 0.00 0.00 0.00 3.51
862 923 7.040201 AGCAAGCATCAAAAAGAACATCTCTAA 60.040 33.333 0.00 0.00 32.46 2.10
977 1047 2.770827 GGGTTTGGGGGAAGAGGG 59.229 66.667 0.00 0.00 0.00 4.30
1092 1172 1.827344 TCCTCCTCGTACTCGTACTCA 59.173 52.381 5.76 0.00 38.33 3.41
1117 1197 2.492090 CTTCTCCCGCTCGTCCAG 59.508 66.667 0.00 0.00 0.00 3.86
1118 1198 3.068691 CCTTCTCCCGCTCGTCCA 61.069 66.667 0.00 0.00 0.00 4.02
1120 1200 2.182030 CACCTTCTCCCGCTCGTC 59.818 66.667 0.00 0.00 0.00 4.20
1121 1201 4.070552 GCACCTTCTCCCGCTCGT 62.071 66.667 0.00 0.00 0.00 4.18
1221 1326 1.591059 CGCCTCAATGAGCTCCTCG 60.591 63.158 12.15 0.00 32.35 4.63
1507 1612 5.171476 GTCTCTAGCTACAAGCAATGTGAA 58.829 41.667 5.51 0.00 45.56 3.18
1655 1760 6.989169 ACTAGCAGGAACTCATGATGATTAAC 59.011 38.462 0.00 0.00 34.60 2.01
1701 1806 3.719268 ACAGTTGCAGGGATACAATCA 57.281 42.857 0.00 0.00 39.74 2.57
1731 1836 8.726988 GGCTACATTCTGATTGTACTGTTTTAA 58.273 33.333 8.01 0.00 0.00 1.52
1733 1838 6.714810 TGGCTACATTCTGATTGTACTGTTTT 59.285 34.615 8.01 0.00 0.00 2.43
1738 1890 4.471386 AGGTGGCTACATTCTGATTGTACT 59.529 41.667 1.52 2.49 0.00 2.73
1739 1891 4.770795 AGGTGGCTACATTCTGATTGTAC 58.229 43.478 1.52 2.67 0.00 2.90
1769 1921 4.275443 GTCTACCTCGTGTTACTATCTGGG 59.725 50.000 0.00 0.00 0.00 4.45
1800 1952 6.264067 AGCATCCTAAGTTAATTTGGAGCATC 59.736 38.462 14.63 1.73 44.48 3.91
1801 1953 6.131961 AGCATCCTAAGTTAATTTGGAGCAT 58.868 36.000 14.63 0.00 44.48 3.79
1802 1954 5.509498 AGCATCCTAAGTTAATTTGGAGCA 58.491 37.500 14.63 0.00 44.48 4.26
1803 1955 6.456795 AAGCATCCTAAGTTAATTTGGAGC 57.543 37.500 2.05 5.74 44.48 4.70
1884 2039 4.935352 TTGCTTCACTTATGCAAACCTT 57.065 36.364 0.00 0.00 43.16 3.50
1941 2096 4.559862 AGGACAATCTAAGTGTTCCAGG 57.440 45.455 0.00 0.00 0.00 4.45
1970 2125 8.584157 AGTTGAGATCGATTATCAGCTAAGATT 58.416 33.333 21.36 5.13 37.03 2.40
2012 2175 8.731275 TTCATTGTCCAACAATCGAATAGTAT 57.269 30.769 2.42 0.00 44.91 2.12
2238 2401 9.947669 GAAAGAGTGATGTGTAATATAGTACGT 57.052 33.333 5.92 0.00 0.00 3.57
2287 2450 2.301870 CCTGCTGTTACCTAGGTTGTGA 59.698 50.000 22.11 0.00 0.00 3.58
2330 2493 0.543749 GAGCTGCACCCAAGACCTAT 59.456 55.000 1.02 0.00 0.00 2.57
2437 2613 8.815141 TCAGTTTTTCATAAACATGTTCCATG 57.185 30.769 12.39 17.13 32.81 3.66
2439 2615 9.829507 AAATCAGTTTTTCATAAACATGTTCCA 57.170 25.926 12.39 3.30 32.81 3.53
2555 2731 9.755804 GTATATCAGTTGATCAAGATTGACTCA 57.244 33.333 8.80 3.76 40.49 3.41
2706 2883 7.630242 TGCCCTCTTAATCAGACAAATAAAG 57.370 36.000 0.00 0.00 0.00 1.85
2745 2922 5.263968 ACACCGATAACTGAACTCATAGG 57.736 43.478 0.00 0.00 0.00 2.57
2793 2970 8.296713 GCTGAAGATCAAACAAACAAGGTAATA 58.703 33.333 0.00 0.00 0.00 0.98
2865 3055 8.110970 ACTGTTAAAAACGTTGAAACATTAGC 57.889 30.769 18.14 8.15 30.33 3.09
2916 3107 4.069304 ACGCTGAACCTTAGTAAATGCAA 58.931 39.130 0.00 0.00 0.00 4.08
2936 3127 5.580691 TGATTAGAGCACAATGAAACCTACG 59.419 40.000 0.00 0.00 0.00 3.51
3057 3248 9.685828 GATCTCAACGCTCTTATACTTCTTTAT 57.314 33.333 0.00 0.00 0.00 1.40
3202 3401 4.141981 TGCCGACAATATAGGTTCGGTAAA 60.142 41.667 16.05 4.62 42.09 2.01
3252 3452 4.813027 AGATTGCCATGCAGTAAAAACAG 58.187 39.130 0.00 0.00 40.61 3.16
3380 3588 2.149578 GCATCCCAGATGTCTGCATAC 58.850 52.381 4.48 0.00 42.47 2.39
3587 3795 7.011950 CGCCATGTAAGGTTGTAAGATAAATCA 59.988 37.037 0.00 0.00 0.00 2.57
3638 3846 2.333926 CTTCTTATGGACGTTGACGCA 58.666 47.619 3.05 0.00 44.43 5.24
3758 3966 1.694696 AGACCACCAACTTGAGAGGAC 59.305 52.381 0.00 0.00 0.00 3.85
3826 4034 2.691011 CGTGAAAAGGGGGACAGAAAAA 59.309 45.455 0.00 0.00 0.00 1.94
3890 4261 6.830912 TCTCCATTATTGTGAGGAACCATAG 58.169 40.000 0.00 0.00 0.00 2.23
3925 4296 8.877779 AGATAATAATAATGAGAACAGATGCGC 58.122 33.333 0.00 0.00 0.00 6.09
4035 4409 2.125673 CCCGCTCCTACACCAACG 60.126 66.667 0.00 0.00 0.00 4.10
4491 4865 1.470458 GGACCATCGAAACGTACCTCC 60.470 57.143 0.00 0.00 0.00 4.30
4498 4872 1.135489 TCGAAGAGGACCATCGAAACG 60.135 52.381 12.80 0.00 42.07 3.60
4503 4877 2.101582 AGGAAATCGAAGAGGACCATCG 59.898 50.000 7.75 7.75 43.63 3.84
4504 4878 3.828875 AGGAAATCGAAGAGGACCATC 57.171 47.619 0.00 0.00 43.63 3.51
4505 4879 4.265073 CAAAGGAAATCGAAGAGGACCAT 58.735 43.478 0.00 0.00 43.63 3.55
4506 4880 3.674997 CAAAGGAAATCGAAGAGGACCA 58.325 45.455 0.00 0.00 43.63 4.02
4507 4881 2.420372 GCAAAGGAAATCGAAGAGGACC 59.580 50.000 0.00 0.00 43.63 4.46
4508 4882 3.074412 TGCAAAGGAAATCGAAGAGGAC 58.926 45.455 0.00 0.00 43.63 3.85
4509 4883 3.074412 GTGCAAAGGAAATCGAAGAGGA 58.926 45.455 0.00 0.00 43.63 3.71
4510 4884 2.162408 GGTGCAAAGGAAATCGAAGAGG 59.838 50.000 0.00 0.00 43.63 3.69
4511 4885 2.813754 TGGTGCAAAGGAAATCGAAGAG 59.186 45.455 0.00 0.00 43.63 2.85
4512 4886 2.813754 CTGGTGCAAAGGAAATCGAAGA 59.186 45.455 0.00 0.00 45.75 2.87
4513 4887 2.813754 TCTGGTGCAAAGGAAATCGAAG 59.186 45.455 0.00 0.00 0.00 3.79
4541 4931 1.069049 AGGCAGGCACAAACAAATGAC 59.931 47.619 0.00 0.00 0.00 3.06
4546 4936 1.108727 CAGGAGGCAGGCACAAACAA 61.109 55.000 0.00 0.00 0.00 2.83
4549 4939 1.228245 GTCAGGAGGCAGGCACAAA 60.228 57.895 0.00 0.00 0.00 2.83
4574 4970 6.321717 TGAACAGAAGCAGTAAACAAGTTTG 58.678 36.000 8.37 0.00 34.23 2.93
4575 4971 6.404734 CCTGAACAGAAGCAGTAAACAAGTTT 60.405 38.462 3.19 3.47 36.63 2.66
4576 4972 5.066505 CCTGAACAGAAGCAGTAAACAAGTT 59.933 40.000 3.19 0.00 0.00 2.66
4577 4973 4.576463 CCTGAACAGAAGCAGTAAACAAGT 59.424 41.667 3.19 0.00 0.00 3.16
4578 4974 4.576463 ACCTGAACAGAAGCAGTAAACAAG 59.424 41.667 3.19 0.00 0.00 3.16
4580 4976 3.876914 CACCTGAACAGAAGCAGTAAACA 59.123 43.478 3.19 0.00 0.00 2.83
4581 4977 4.127171 TCACCTGAACAGAAGCAGTAAAC 58.873 43.478 3.19 0.00 0.00 2.01
4708 5109 1.810030 GAAGGGATGCCACGTCGAC 60.810 63.158 5.86 5.18 0.00 4.20
4711 5112 2.109126 GCAGAAGGGATGCCACGTC 61.109 63.158 5.86 0.00 37.73 4.34
4741 5179 1.303074 TCCAGCAGGTACTCGTCGT 60.303 57.895 0.00 0.00 34.60 4.34
4902 5347 4.273480 GCAGCATCGGTATTTCAGTTACAT 59.727 41.667 0.00 0.00 0.00 2.29
5037 5508 3.080300 ACGGGCAGTATTTGATCCAAA 57.920 42.857 0.00 0.00 37.75 3.28
5213 5708 2.282039 CGGCCCAAAATCAAGCCCA 61.282 57.895 0.00 0.00 42.66 5.36
5274 5769 0.442699 GAGCTTGTAAAAGCCCGACG 59.557 55.000 14.25 0.00 46.61 5.12
5301 5816 4.394712 CGCCAGAGAAGCCGGGTT 62.395 66.667 20.91 20.91 0.00 4.11
5307 5822 3.941657 AAGGACGCGCCAGAGAAGC 62.942 63.158 19.30 0.00 40.02 3.86
5309 5824 1.667830 CAAAGGACGCGCCAGAGAA 60.668 57.895 19.30 0.00 40.02 2.87
5310 5825 2.048222 CAAAGGACGCGCCAGAGA 60.048 61.111 19.30 0.00 40.02 3.10
5311 5826 3.121030 CCAAAGGACGCGCCAGAG 61.121 66.667 19.30 9.35 40.02 3.35
5312 5827 3.936203 ACCAAAGGACGCGCCAGA 61.936 61.111 19.30 0.00 40.02 3.86
5313 5828 3.726517 CACCAAAGGACGCGCCAG 61.727 66.667 19.30 9.93 40.02 4.85
5360 6021 5.353956 TCTCCATCACCATTTATGTTTCACG 59.646 40.000 0.00 0.00 0.00 4.35
5373 6034 1.971149 ACCCATCTTCTCCATCACCA 58.029 50.000 0.00 0.00 0.00 4.17
5392 6053 1.080501 CTGTGAGCTTCGCCTCGAA 60.081 57.895 1.63 1.63 43.75 3.71
5425 6086 1.215647 GTCGTCAATGAGCCCTCGT 59.784 57.895 0.00 0.00 0.00 4.18
5428 6089 1.679944 CCAATGTCGTCAATGAGCCCT 60.680 52.381 0.00 0.00 0.00 5.19
5439 6100 1.966493 GCGTGCGATTCCAATGTCGT 61.966 55.000 0.00 0.00 39.87 4.34
5445 6106 1.741401 CTCTGGCGTGCGATTCCAA 60.741 57.895 0.00 0.00 0.00 3.53
5450 6111 4.827087 CCAGCTCTGGCGTGCGAT 62.827 66.667 2.59 0.00 44.73 4.58
5460 6121 3.076092 CTCAACTGCCCCAGCTCT 58.924 61.111 0.00 0.00 40.80 4.09
5461 6122 2.749441 GCTCAACTGCCCCAGCTC 60.749 66.667 0.00 0.00 40.80 4.09
5462 6123 1.492133 TAAGCTCAACTGCCCCAGCT 61.492 55.000 0.00 0.00 44.28 4.24
5463 6124 0.609131 TTAAGCTCAACTGCCCCAGC 60.609 55.000 0.00 0.00 34.37 4.85
5464 6125 2.134789 ATTAAGCTCAACTGCCCCAG 57.865 50.000 0.00 0.00 37.52 4.45
5465 6126 2.446435 GAATTAAGCTCAACTGCCCCA 58.554 47.619 0.00 0.00 0.00 4.96
5466 6127 1.401905 CGAATTAAGCTCAACTGCCCC 59.598 52.381 0.00 0.00 0.00 5.80
5467 6128 2.352960 CTCGAATTAAGCTCAACTGCCC 59.647 50.000 0.00 0.00 0.00 5.36
5468 6129 3.003480 ACTCGAATTAAGCTCAACTGCC 58.997 45.455 0.00 0.00 0.00 4.85
5469 6130 3.181516 CCACTCGAATTAAGCTCAACTGC 60.182 47.826 0.00 0.00 0.00 4.40
5470 6131 3.181516 GCCACTCGAATTAAGCTCAACTG 60.182 47.826 0.00 0.00 0.00 3.16
5471 6132 3.003480 GCCACTCGAATTAAGCTCAACT 58.997 45.455 0.00 0.00 0.00 3.16
5472 6133 2.096013 GGCCACTCGAATTAAGCTCAAC 59.904 50.000 0.00 0.00 0.00 3.18
5473 6134 2.027192 AGGCCACTCGAATTAAGCTCAA 60.027 45.455 5.01 0.00 0.00 3.02
5474 6135 1.555075 AGGCCACTCGAATTAAGCTCA 59.445 47.619 5.01 0.00 0.00 4.26
5475 6136 1.936547 CAGGCCACTCGAATTAAGCTC 59.063 52.381 5.01 0.00 0.00 4.09
5476 6137 1.407437 CCAGGCCACTCGAATTAAGCT 60.407 52.381 5.01 0.00 0.00 3.74
5477 6138 1.017387 CCAGGCCACTCGAATTAAGC 58.983 55.000 5.01 0.00 0.00 3.09
5478 6139 1.017387 GCCAGGCCACTCGAATTAAG 58.983 55.000 5.01 0.00 0.00 1.85
5479 6140 0.742990 CGCCAGGCCACTCGAATTAA 60.743 55.000 5.01 0.00 0.00 1.40
5480 6141 1.153449 CGCCAGGCCACTCGAATTA 60.153 57.895 5.01 0.00 0.00 1.40
5481 6142 2.436646 CGCCAGGCCACTCGAATT 60.437 61.111 5.01 0.00 0.00 2.17
5482 6143 4.473520 CCGCCAGGCCACTCGAAT 62.474 66.667 5.01 0.00 0.00 3.34
5493 6154 4.087892 CACCCTCTCCACCGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
5494 6155 4.631740 TCACCCTCTCCACCGCCA 62.632 66.667 0.00 0.00 0.00 5.69
5495 6156 3.775654 CTCACCCTCTCCACCGCC 61.776 72.222 0.00 0.00 0.00 6.13
5496 6157 4.459089 GCTCACCCTCTCCACCGC 62.459 72.222 0.00 0.00 0.00 5.68
5497 6158 1.903877 AATGCTCACCCTCTCCACCG 61.904 60.000 0.00 0.00 0.00 4.94
5498 6159 0.393537 CAATGCTCACCCTCTCCACC 60.394 60.000 0.00 0.00 0.00 4.61
5499 6160 0.393537 CCAATGCTCACCCTCTCCAC 60.394 60.000 0.00 0.00 0.00 4.02
5500 6161 0.842030 ACCAATGCTCACCCTCTCCA 60.842 55.000 0.00 0.00 0.00 3.86
5501 6162 0.329596 AACCAATGCTCACCCTCTCC 59.670 55.000 0.00 0.00 0.00 3.71
5502 6163 1.457346 CAACCAATGCTCACCCTCTC 58.543 55.000 0.00 0.00 0.00 3.20
5503 6164 0.038744 CCAACCAATGCTCACCCTCT 59.961 55.000 0.00 0.00 0.00 3.69
5504 6165 0.967380 CCCAACCAATGCTCACCCTC 60.967 60.000 0.00 0.00 0.00 4.30
5505 6166 1.077265 CCCAACCAATGCTCACCCT 59.923 57.895 0.00 0.00 0.00 4.34
5506 6167 0.967380 CTCCCAACCAATGCTCACCC 60.967 60.000 0.00 0.00 0.00 4.61
5507 6168 0.251341 ACTCCCAACCAATGCTCACC 60.251 55.000 0.00 0.00 0.00 4.02
5508 6169 1.168714 GACTCCCAACCAATGCTCAC 58.831 55.000 0.00 0.00 0.00 3.51
5509 6170 0.321564 CGACTCCCAACCAATGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
5510 6171 1.026718 CCGACTCCCAACCAATGCTC 61.027 60.000 0.00 0.00 0.00 4.26
5511 6172 1.002134 CCGACTCCCAACCAATGCT 60.002 57.895 0.00 0.00 0.00 3.79
5512 6173 1.002624 TCCGACTCCCAACCAATGC 60.003 57.895 0.00 0.00 0.00 3.56
5513 6174 0.613260 TCTCCGACTCCCAACCAATG 59.387 55.000 0.00 0.00 0.00 2.82
5514 6175 0.905357 CTCTCCGACTCCCAACCAAT 59.095 55.000 0.00 0.00 0.00 3.16
5515 6176 1.192146 CCTCTCCGACTCCCAACCAA 61.192 60.000 0.00 0.00 0.00 3.67
5516 6177 1.609501 CCTCTCCGACTCCCAACCA 60.610 63.158 0.00 0.00 0.00 3.67
5517 6178 2.359967 CCCTCTCCGACTCCCAACC 61.360 68.421 0.00 0.00 0.00 3.77
5518 6179 2.359967 CCCCTCTCCGACTCCCAAC 61.360 68.421 0.00 0.00 0.00 3.77
5519 6180 2.038975 CCCCTCTCCGACTCCCAA 59.961 66.667 0.00 0.00 0.00 4.12
5520 6181 3.273654 ACCCCTCTCCGACTCCCA 61.274 66.667 0.00 0.00 0.00 4.37
5521 6182 2.760385 CACCCCTCTCCGACTCCC 60.760 72.222 0.00 0.00 0.00 4.30
5522 6183 0.324091 TAACACCCCTCTCCGACTCC 60.324 60.000 0.00 0.00 0.00 3.85
5523 6184 1.104630 CTAACACCCCTCTCCGACTC 58.895 60.000 0.00 0.00 0.00 3.36
5524 6185 0.324460 CCTAACACCCCTCTCCGACT 60.324 60.000 0.00 0.00 0.00 4.18
5525 6186 1.328430 CCCTAACACCCCTCTCCGAC 61.328 65.000 0.00 0.00 0.00 4.79
5526 6187 1.001248 CCCTAACACCCCTCTCCGA 59.999 63.158 0.00 0.00 0.00 4.55
5527 6188 2.064581 CCCCTAACACCCCTCTCCG 61.065 68.421 0.00 0.00 0.00 4.63
5528 6189 1.693103 CCCCCTAACACCCCTCTCC 60.693 68.421 0.00 0.00 0.00 3.71
5529 6190 0.549413 AACCCCCTAACACCCCTCTC 60.549 60.000 0.00 0.00 0.00 3.20
5530 6191 0.549413 GAACCCCCTAACACCCCTCT 60.549 60.000 0.00 0.00 0.00 3.69
5531 6192 0.549413 AGAACCCCCTAACACCCCTC 60.549 60.000 0.00 0.00 0.00 4.30
5532 6193 0.801574 TAGAACCCCCTAACACCCCT 59.198 55.000 0.00 0.00 0.00 4.79
5533 6194 1.210538 CTAGAACCCCCTAACACCCC 58.789 60.000 0.00 0.00 0.00 4.95
5534 6195 1.962558 ACTAGAACCCCCTAACACCC 58.037 55.000 0.00 0.00 0.00 4.61
5535 6196 3.036819 CCTACTAGAACCCCCTAACACC 58.963 54.545 0.00 0.00 0.00 4.16
5536 6197 3.036819 CCCTACTAGAACCCCCTAACAC 58.963 54.545 0.00 0.00 0.00 3.32
5537 6198 2.022722 CCCCTACTAGAACCCCCTAACA 60.023 54.545 0.00 0.00 0.00 2.41
5538 6199 2.687297 CCCCTACTAGAACCCCCTAAC 58.313 57.143 0.00 0.00 0.00 2.34
5539 6200 1.582132 CCCCCTACTAGAACCCCCTAA 59.418 57.143 0.00 0.00 0.00 2.69
5540 6201 1.248227 CCCCCTACTAGAACCCCCTA 58.752 60.000 0.00 0.00 0.00 3.53
5541 6202 2.033831 CCCCCTACTAGAACCCCCT 58.966 63.158 0.00 0.00 0.00 4.79
5542 6203 4.743803 CCCCCTACTAGAACCCCC 57.256 66.667 0.00 0.00 0.00 5.40
5583 6244 0.733566 TACGCTTAAAGTCGGCCACG 60.734 55.000 2.24 0.00 42.74 4.94
5584 6245 1.591619 GATACGCTTAAAGTCGGCCAC 59.408 52.381 2.24 0.00 0.00 5.01
5585 6246 1.479323 AGATACGCTTAAAGTCGGCCA 59.521 47.619 2.24 0.00 0.00 5.36
5586 6247 2.125685 GAGATACGCTTAAAGTCGGCC 58.874 52.381 0.00 0.00 0.00 6.13
5587 6248 2.789893 CAGAGATACGCTTAAAGTCGGC 59.210 50.000 0.00 0.00 0.00 5.54
5588 6249 3.066342 TCCAGAGATACGCTTAAAGTCGG 59.934 47.826 0.00 0.00 0.00 4.79
5589 6250 4.288670 TCCAGAGATACGCTTAAAGTCG 57.711 45.455 0.00 0.00 0.00 4.18
5590 6251 4.912766 CGATCCAGAGATACGCTTAAAGTC 59.087 45.833 0.00 0.00 30.90 3.01
5591 6252 4.579340 TCGATCCAGAGATACGCTTAAAGT 59.421 41.667 0.00 0.00 30.90 2.66
5592 6253 4.912766 GTCGATCCAGAGATACGCTTAAAG 59.087 45.833 0.00 0.00 30.90 1.85
5593 6254 4.579340 AGTCGATCCAGAGATACGCTTAAA 59.421 41.667 0.00 0.00 30.90 1.52
5594 6255 4.023963 CAGTCGATCCAGAGATACGCTTAA 60.024 45.833 0.00 0.00 30.90 1.85
5595 6256 3.498777 CAGTCGATCCAGAGATACGCTTA 59.501 47.826 0.00 0.00 30.90 3.09
5596 6257 2.292016 CAGTCGATCCAGAGATACGCTT 59.708 50.000 0.00 0.00 30.90 4.68
5597 6258 1.876799 CAGTCGATCCAGAGATACGCT 59.123 52.381 0.00 0.00 30.90 5.07
5598 6259 1.874231 TCAGTCGATCCAGAGATACGC 59.126 52.381 0.00 0.00 30.90 4.42
5599 6260 4.757799 ATTCAGTCGATCCAGAGATACG 57.242 45.455 0.00 0.00 30.90 3.06
5600 6261 8.952278 AGTTATATTCAGTCGATCCAGAGATAC 58.048 37.037 0.00 0.00 30.90 2.24
5601 6262 9.168451 GAGTTATATTCAGTCGATCCAGAGATA 57.832 37.037 0.00 0.00 30.90 1.98
5602 6263 7.888021 AGAGTTATATTCAGTCGATCCAGAGAT 59.112 37.037 0.00 0.00 34.57 2.75
5603 6264 7.227873 AGAGTTATATTCAGTCGATCCAGAGA 58.772 38.462 0.00 0.00 0.00 3.10
5604 6265 7.447374 AGAGTTATATTCAGTCGATCCAGAG 57.553 40.000 0.00 0.00 0.00 3.35
5605 6266 7.825331 AAGAGTTATATTCAGTCGATCCAGA 57.175 36.000 0.00 0.00 0.00 3.86
5606 6267 8.879342 AAAAGAGTTATATTCAGTCGATCCAG 57.121 34.615 0.00 0.00 0.00 3.86
5610 6271 9.765795 CCCTTAAAAGAGTTATATTCAGTCGAT 57.234 33.333 0.00 0.00 0.00 3.59
5611 6272 8.755977 ACCCTTAAAAGAGTTATATTCAGTCGA 58.244 33.333 0.00 0.00 0.00 4.20
5612 6273 8.818057 CACCCTTAAAAGAGTTATATTCAGTCG 58.182 37.037 0.00 0.00 0.00 4.18
5613 6274 9.886132 TCACCCTTAAAAGAGTTATATTCAGTC 57.114 33.333 0.00 0.00 0.00 3.51
5618 6279 9.628500 GGACATCACCCTTAAAAGAGTTATATT 57.372 33.333 0.00 0.00 0.00 1.28
5619 6280 9.004231 AGGACATCACCCTTAAAAGAGTTATAT 57.996 33.333 0.00 0.00 0.00 0.86
5620 6281 8.388656 AGGACATCACCCTTAAAAGAGTTATA 57.611 34.615 0.00 0.00 0.00 0.98
5621 6282 7.272144 AGGACATCACCCTTAAAAGAGTTAT 57.728 36.000 0.00 0.00 0.00 1.89
5622 6283 6.573680 CGAGGACATCACCCTTAAAAGAGTTA 60.574 42.308 0.00 0.00 33.36 2.24
5623 6284 5.561679 GAGGACATCACCCTTAAAAGAGTT 58.438 41.667 0.00 0.00 33.36 3.01
5624 6285 4.322801 CGAGGACATCACCCTTAAAAGAGT 60.323 45.833 0.00 0.00 33.36 3.24
5625 6286 4.184629 CGAGGACATCACCCTTAAAAGAG 58.815 47.826 0.00 0.00 33.36 2.85
5626 6287 3.055385 CCGAGGACATCACCCTTAAAAGA 60.055 47.826 0.00 0.00 33.36 2.52
5627 6288 3.055385 TCCGAGGACATCACCCTTAAAAG 60.055 47.826 0.00 0.00 33.36 2.27
5628 6289 2.907696 TCCGAGGACATCACCCTTAAAA 59.092 45.455 0.00 0.00 33.36 1.52
5629 6290 2.542550 TCCGAGGACATCACCCTTAAA 58.457 47.619 0.00 0.00 33.36 1.52
5630 6291 2.235402 GTTCCGAGGACATCACCCTTAA 59.765 50.000 0.00 0.00 33.36 1.85
5631 6292 1.829222 GTTCCGAGGACATCACCCTTA 59.171 52.381 0.00 0.00 33.36 2.69
5632 6293 0.613777 GTTCCGAGGACATCACCCTT 59.386 55.000 0.00 0.00 33.36 3.95
5633 6294 1.265454 GGTTCCGAGGACATCACCCT 61.265 60.000 0.00 0.00 36.57 4.34
5634 6295 1.221021 GGTTCCGAGGACATCACCC 59.779 63.158 0.00 0.00 0.00 4.61
5635 6296 0.391263 GTGGTTCCGAGGACATCACC 60.391 60.000 4.23 4.23 0.00 4.02
5636 6297 0.608640 AGTGGTTCCGAGGACATCAC 59.391 55.000 8.61 8.61 0.00 3.06
5637 6298 0.608130 CAGTGGTTCCGAGGACATCA 59.392 55.000 0.00 0.00 0.00 3.07
5638 6299 0.895530 TCAGTGGTTCCGAGGACATC 59.104 55.000 0.00 0.00 0.00 3.06
5639 6300 1.002087 GTTCAGTGGTTCCGAGGACAT 59.998 52.381 0.00 0.00 0.00 3.06
5640 6301 0.391597 GTTCAGTGGTTCCGAGGACA 59.608 55.000 0.00 0.00 0.00 4.02
5641 6302 0.320508 GGTTCAGTGGTTCCGAGGAC 60.321 60.000 0.00 0.00 0.00 3.85
5642 6303 0.761323 TGGTTCAGTGGTTCCGAGGA 60.761 55.000 0.00 0.00 0.00 3.71
5643 6304 0.602905 GTGGTTCAGTGGTTCCGAGG 60.603 60.000 0.00 0.00 0.00 4.63
5644 6305 0.105964 TGTGGTTCAGTGGTTCCGAG 59.894 55.000 0.00 0.00 0.00 4.63
5645 6306 0.762418 ATGTGGTTCAGTGGTTCCGA 59.238 50.000 0.00 0.00 0.00 4.55
5646 6307 0.874390 CATGTGGTTCAGTGGTTCCG 59.126 55.000 0.00 0.00 0.00 4.30
5647 6308 2.154462 CTCATGTGGTTCAGTGGTTCC 58.846 52.381 0.00 0.00 0.00 3.62
5648 6309 2.851195 ACTCATGTGGTTCAGTGGTTC 58.149 47.619 0.00 0.00 0.00 3.62
5649 6310 2.951642 CAACTCATGTGGTTCAGTGGTT 59.048 45.455 0.00 0.00 0.00 3.67
5650 6311 2.575532 CAACTCATGTGGTTCAGTGGT 58.424 47.619 0.00 0.00 0.00 4.16
5651 6312 1.881973 CCAACTCATGTGGTTCAGTGG 59.118 52.381 0.00 0.00 0.00 4.00
5652 6313 2.575532 ACCAACTCATGTGGTTCAGTG 58.424 47.619 0.69 0.00 30.72 3.66
5653 6314 3.297134 AACCAACTCATGTGGTTCAGT 57.703 42.857 12.27 6.92 41.60 3.41
5654 6315 4.641396 TCTAACCAACTCATGTGGTTCAG 58.359 43.478 19.39 15.11 43.96 3.02
5655 6316 4.698201 TCTAACCAACTCATGTGGTTCA 57.302 40.909 19.39 7.93 43.96 3.18
5656 6317 4.142600 GCATCTAACCAACTCATGTGGTTC 60.143 45.833 19.39 4.98 43.96 3.62
5657 6318 3.758554 GCATCTAACCAACTCATGTGGTT 59.241 43.478 19.64 19.64 46.39 3.67
5658 6319 3.347216 GCATCTAACCAACTCATGTGGT 58.653 45.455 0.69 0.69 37.57 4.16
5659 6320 2.352651 CGCATCTAACCAACTCATGTGG 59.647 50.000 0.00 0.00 0.00 4.17
5660 6321 3.663464 CGCATCTAACCAACTCATGTG 57.337 47.619 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.