Multiple sequence alignment - TraesCS1B01G304100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G304100 chr1B 100.000 2908 0 0 1 2908 526349892 526346985 0.000000e+00 5371.0
1 TraesCS1B01G304100 chr1B 96.804 219 7 0 2092 2310 654508410 654508628 1.650000e-97 366.0
2 TraesCS1B01G304100 chr1B 95.890 219 9 0 2092 2310 22663782 22663564 3.560000e-94 355.0
3 TraesCS1B01G304100 chr1D 95.536 1277 35 8 817 2093 395559765 395558511 0.000000e+00 2023.0
4 TraesCS1B01G304100 chr1D 95.364 604 20 4 2309 2908 395558512 395557913 0.000000e+00 953.0
5 TraesCS1B01G304100 chr1D 93.590 234 13 2 2085 2318 46331041 46330810 5.960000e-92 348.0
6 TraesCS1B01G304100 chr1A 95.866 1161 26 7 797 1957 489601391 489600253 0.000000e+00 1858.0
7 TraesCS1B01G304100 chr1A 95.659 599 24 1 2309 2907 489600151 489599555 0.000000e+00 961.0
8 TraesCS1B01G304100 chr1A 95.238 105 5 0 1989 2093 489600254 489600150 1.790000e-37 167.0
9 TraesCS1B01G304100 chr2B 96.750 800 22 3 1 797 432972241 432973039 0.000000e+00 1330.0
10 TraesCS1B01G304100 chr2B 96.366 798 28 1 1 797 750111478 750112275 0.000000e+00 1312.0
11 TraesCS1B01G304100 chr2B 96.130 801 30 1 1 801 55151223 55152022 0.000000e+00 1306.0
12 TraesCS1B01G304100 chr2B 95.890 219 9 0 2092 2310 509158256 509158038 3.560000e-94 355.0
13 TraesCS1B01G304100 chr2B 95.890 219 9 0 2092 2310 782101369 782101587 3.560000e-94 355.0
14 TraesCS1B01G304100 chr2B 83.333 72 8 4 1959 2027 759273380 759273310 2.420000e-06 63.9
15 TraesCS1B01G304100 chr6B 96.738 797 26 0 1 797 712338636 712339432 0.000000e+00 1328.0
16 TraesCS1B01G304100 chr6B 96.491 798 27 1 1 797 711656996 711657793 0.000000e+00 1317.0
17 TraesCS1B01G304100 chr6B 95.880 801 28 3 1 797 478463636 478464435 0.000000e+00 1291.0
18 TraesCS1B01G304100 chr6B 95.890 219 9 0 2092 2310 174534768 174534986 3.560000e-94 355.0
19 TraesCS1B01G304100 chrUn 96.245 799 28 2 1 797 49777002 49777800 0.000000e+00 1308.0
20 TraesCS1B01G304100 chr7B 85.801 1324 81 44 797 2089 632684470 632685717 0.000000e+00 1304.0
21 TraesCS1B01G304100 chr7B 83.981 206 19 9 2624 2816 632685975 632686179 4.950000e-43 185.0
22 TraesCS1B01G304100 chr7B 87.395 119 15 0 1644 1762 19975506 19975388 1.410000e-28 137.0
23 TraesCS1B01G304100 chr7B 81.967 122 9 7 2310 2422 19955740 19955623 1.110000e-14 91.6
24 TraesCS1B01G304100 chr7B 100.000 34 0 0 1840 1873 632688538 632688571 2.420000e-06 63.9
25 TraesCS1B01G304100 chr3B 95.776 805 29 4 1 801 765596910 765597713 0.000000e+00 1293.0
26 TraesCS1B01G304100 chr3B 85.435 817 81 20 967 1760 733574000 733574801 0.000000e+00 815.0
27 TraesCS1B01G304100 chr3B 82.007 917 113 27 997 1886 733628624 733629515 0.000000e+00 732.0
28 TraesCS1B01G304100 chr3B 95.175 228 10 1 2092 2319 813188516 813188290 2.760000e-95 359.0
29 TraesCS1B01G304100 chr3B 100.000 44 0 0 1840 1883 733574870 733574913 6.680000e-12 82.4
30 TraesCS1B01G304100 chr3B 87.931 58 5 2 1989 2045 733575029 733575085 1.870000e-07 67.6
31 TraesCS1B01G304100 chr5B 95.761 802 28 3 1 800 65249232 65248435 0.000000e+00 1288.0
32 TraesCS1B01G304100 chr7D 87.873 1138 60 29 969 2089 573898032 573899108 0.000000e+00 1266.0
33 TraesCS1B01G304100 chr7D 83.056 301 34 9 2624 2908 573899383 573899682 1.030000e-64 257.0
34 TraesCS1B01G304100 chr7D 78.930 299 28 15 2311 2598 573899113 573899387 1.390000e-38 171.0
35 TraesCS1B01G304100 chr7D 100.000 34 0 0 1840 1873 573905557 573905590 2.420000e-06 63.9
36 TraesCS1B01G304100 chr3D 83.567 785 95 20 997 1762 552782381 552783150 0.000000e+00 704.0
37 TraesCS1B01G304100 chr3D 83.000 500 68 15 969 1459 552755130 552755621 1.240000e-118 436.0
38 TraesCS1B01G304100 chr3D 96.380 221 8 0 2091 2311 313307673 313307893 5.920000e-97 364.0
39 TraesCS1B01G304100 chr3D 95.745 47 2 0 1840 1886 552783231 552783277 3.110000e-10 76.8
40 TraesCS1B01G304100 chr3A 80.837 908 112 27 996 1886 689111918 689112780 0.000000e+00 656.0
41 TraesCS1B01G304100 chr2D 77.465 710 110 21 1049 1722 489009828 489009133 2.110000e-101 379.0
42 TraesCS1B01G304100 chr2D 93.562 233 14 1 2081 2313 452402055 452401824 2.150000e-91 346.0
43 TraesCS1B01G304100 chr2D 87.745 204 18 2 1566 1762 488872720 488872923 6.270000e-57 231.0
44 TraesCS1B01G304100 chr2D 97.436 39 1 0 1990 2028 488994434 488994396 1.870000e-07 67.6
45 TraesCS1B01G304100 chr2A 89.320 103 11 0 1644 1746 751197303 751197201 2.350000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G304100 chr1B 526346985 526349892 2907 True 5371.000000 5371 100.000000 1 2908 1 chr1B.!!$R2 2907
1 TraesCS1B01G304100 chr1D 395557913 395559765 1852 True 1488.000000 2023 95.450000 817 2908 2 chr1D.!!$R2 2091
2 TraesCS1B01G304100 chr1A 489599555 489601391 1836 True 995.333333 1858 95.587667 797 2907 3 chr1A.!!$R1 2110
3 TraesCS1B01G304100 chr2B 432972241 432973039 798 False 1330.000000 1330 96.750000 1 797 1 chr2B.!!$F2 796
4 TraesCS1B01G304100 chr2B 750111478 750112275 797 False 1312.000000 1312 96.366000 1 797 1 chr2B.!!$F3 796
5 TraesCS1B01G304100 chr2B 55151223 55152022 799 False 1306.000000 1306 96.130000 1 801 1 chr2B.!!$F1 800
6 TraesCS1B01G304100 chr6B 712338636 712339432 796 False 1328.000000 1328 96.738000 1 797 1 chr6B.!!$F4 796
7 TraesCS1B01G304100 chr6B 711656996 711657793 797 False 1317.000000 1317 96.491000 1 797 1 chr6B.!!$F3 796
8 TraesCS1B01G304100 chr6B 478463636 478464435 799 False 1291.000000 1291 95.880000 1 797 1 chr6B.!!$F2 796
9 TraesCS1B01G304100 chrUn 49777002 49777800 798 False 1308.000000 1308 96.245000 1 797 1 chrUn.!!$F1 796
10 TraesCS1B01G304100 chr7B 632684470 632688571 4101 False 517.633333 1304 89.927333 797 2816 3 chr7B.!!$F1 2019
11 TraesCS1B01G304100 chr3B 765596910 765597713 803 False 1293.000000 1293 95.776000 1 801 1 chr3B.!!$F2 800
12 TraesCS1B01G304100 chr3B 733628624 733629515 891 False 732.000000 732 82.007000 997 1886 1 chr3B.!!$F1 889
13 TraesCS1B01G304100 chr3B 733574000 733575085 1085 False 321.666667 815 91.122000 967 2045 3 chr3B.!!$F3 1078
14 TraesCS1B01G304100 chr5B 65248435 65249232 797 True 1288.000000 1288 95.761000 1 800 1 chr5B.!!$R1 799
15 TraesCS1B01G304100 chr7D 573898032 573899682 1650 False 564.666667 1266 83.286333 969 2908 3 chr7D.!!$F2 1939
16 TraesCS1B01G304100 chr3D 552782381 552783277 896 False 390.400000 704 89.656000 997 1886 2 chr3D.!!$F3 889
17 TraesCS1B01G304100 chr3A 689111918 689112780 862 False 656.000000 656 80.837000 996 1886 1 chr3A.!!$F1 890
18 TraesCS1B01G304100 chr2D 489009133 489009828 695 True 379.000000 379 77.465000 1049 1722 1 chr2D.!!$R3 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 790 0.52847 GCGAGACTACCAACTGCTCT 59.472 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 2549 0.106918 AGCTACTCCCTCCGTCTCAG 60.107 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
469 472 4.632153 TCTCTGCTACCAAACAGTTTCTC 58.368 43.478 0.00 0.00 35.37 2.87
497 500 5.319043 ACAAGGAAGGAAAGTTATGGACA 57.681 39.130 0.00 0.00 0.00 4.02
626 629 7.667043 TGCGACAGTATAAAAAGTTCTGATT 57.333 32.000 0.00 0.00 0.00 2.57
690 693 0.689745 CCGATGAAGTGGGGGAGGTA 60.690 60.000 0.00 0.00 0.00 3.08
749 755 3.727146 ACGAAAGTGGTGGAACGC 58.273 55.556 0.00 0.00 46.97 4.84
782 790 0.528470 GCGAGACTACCAACTGCTCT 59.472 55.000 0.00 0.00 0.00 4.09
788 796 5.527951 CGAGACTACCAACTGCTCTATTAGA 59.472 44.000 0.00 0.00 0.00 2.10
815 823 1.067250 CTAGAGCGAGAAGGGCTGC 59.933 63.158 0.00 0.00 41.72 5.25
823 831 1.871126 GAGAAGGGCTGCCTTGTTGC 61.871 60.000 19.68 0.00 0.00 4.17
1236 1309 4.166888 GGCGCCAGGATGCTCTCA 62.167 66.667 24.80 0.00 31.97 3.27
1730 1875 2.664851 CGCCTCGCCAAGTTGACA 60.665 61.111 3.87 0.00 0.00 3.58
1776 1925 0.903236 GGTCCGCTACCTTCCTCTTT 59.097 55.000 0.00 0.00 45.75 2.52
1786 1935 4.374689 ACCTTCCTCTTTTCTTCCTTCC 57.625 45.455 0.00 0.00 0.00 3.46
1787 1936 3.984090 ACCTTCCTCTTTTCTTCCTTCCT 59.016 43.478 0.00 0.00 0.00 3.36
1788 1937 4.042311 ACCTTCCTCTTTTCTTCCTTCCTC 59.958 45.833 0.00 0.00 0.00 3.71
1789 1938 4.566697 CCTTCCTCTTTTCTTCCTTCCTCC 60.567 50.000 0.00 0.00 0.00 4.30
1790 1939 2.913617 TCCTCTTTTCTTCCTTCCTCCC 59.086 50.000 0.00 0.00 0.00 4.30
1791 1940 2.916269 CCTCTTTTCTTCCTTCCTCCCT 59.084 50.000 0.00 0.00 0.00 4.20
1792 1941 4.104831 CCTCTTTTCTTCCTTCCTCCCTA 58.895 47.826 0.00 0.00 0.00 3.53
1793 1942 4.080807 CCTCTTTTCTTCCTTCCTCCCTAC 60.081 50.000 0.00 0.00 0.00 3.18
1794 1943 4.764491 TCTTTTCTTCCTTCCTCCCTACT 58.236 43.478 0.00 0.00 0.00 2.57
1891 2118 1.592669 CACCTGATCCATCGACGCC 60.593 63.158 0.00 0.00 0.00 5.68
1955 2211 4.202440 CCATGCTCCTCCTATCACTCATTT 60.202 45.833 0.00 0.00 0.00 2.32
1956 2212 5.012458 CCATGCTCCTCCTATCACTCATTTA 59.988 44.000 0.00 0.00 0.00 1.40
1957 2213 6.464892 CCATGCTCCTCCTATCACTCATTTAA 60.465 42.308 0.00 0.00 0.00 1.52
1958 2214 6.753913 TGCTCCTCCTATCACTCATTTAAT 57.246 37.500 0.00 0.00 0.00 1.40
1959 2215 7.141758 TGCTCCTCCTATCACTCATTTAATT 57.858 36.000 0.00 0.00 0.00 1.40
1960 2216 8.262601 TGCTCCTCCTATCACTCATTTAATTA 57.737 34.615 0.00 0.00 0.00 1.40
1961 2217 8.150945 TGCTCCTCCTATCACTCATTTAATTAC 58.849 37.037 0.00 0.00 0.00 1.89
1962 2218 8.371699 GCTCCTCCTATCACTCATTTAATTACT 58.628 37.037 0.00 0.00 0.00 2.24
2017 2273 5.476945 AGACTTGTGGTTTCAGTTCAGTTTT 59.523 36.000 0.00 0.00 0.00 2.43
2072 2328 6.442541 TCTGTGTTTAACTAAATCCTGGGA 57.557 37.500 0.00 0.00 0.00 4.37
2089 2345 0.385390 GGAGGCCGTGGCAATTTATG 59.615 55.000 13.76 0.00 44.11 1.90
2091 2347 1.476488 GAGGCCGTGGCAATTTATGTT 59.524 47.619 13.76 0.00 44.11 2.71
2092 2348 2.685897 GAGGCCGTGGCAATTTATGTTA 59.314 45.455 13.76 0.00 44.11 2.41
2093 2349 2.425668 AGGCCGTGGCAATTTATGTTAC 59.574 45.455 13.76 0.00 44.11 2.50
2094 2350 2.425668 GGCCGTGGCAATTTATGTTACT 59.574 45.455 13.76 0.00 44.11 2.24
2095 2351 3.628487 GGCCGTGGCAATTTATGTTACTA 59.372 43.478 13.76 0.00 44.11 1.82
2096 2352 4.496840 GGCCGTGGCAATTTATGTTACTAC 60.497 45.833 13.76 0.00 44.11 2.73
2097 2353 4.496840 GCCGTGGCAATTTATGTTACTACC 60.497 45.833 5.89 0.00 41.49 3.18
2098 2354 4.879545 CCGTGGCAATTTATGTTACTACCT 59.120 41.667 0.00 0.00 0.00 3.08
2099 2355 5.007332 CCGTGGCAATTTATGTTACTACCTC 59.993 44.000 0.00 0.00 0.00 3.85
2100 2356 5.815740 CGTGGCAATTTATGTTACTACCTCT 59.184 40.000 0.00 0.00 0.00 3.69
2101 2357 6.018994 CGTGGCAATTTATGTTACTACCTCTC 60.019 42.308 0.00 0.00 0.00 3.20
2102 2358 7.048512 GTGGCAATTTATGTTACTACCTCTCT 58.951 38.462 0.00 0.00 0.00 3.10
2103 2359 7.224949 GTGGCAATTTATGTTACTACCTCTCTC 59.775 40.741 0.00 0.00 0.00 3.20
2104 2360 7.125811 TGGCAATTTATGTTACTACCTCTCTCT 59.874 37.037 0.00 0.00 0.00 3.10
2105 2361 7.988028 GGCAATTTATGTTACTACCTCTCTCTT 59.012 37.037 0.00 0.00 0.00 2.85
2113 2369 9.750783 ATGTTACTACCTCTCTCTTAGTTTACA 57.249 33.333 0.00 0.00 0.00 2.41
2114 2370 9.228949 TGTTACTACCTCTCTCTTAGTTTACAG 57.771 37.037 0.00 0.00 0.00 2.74
2115 2371 8.676401 GTTACTACCTCTCTCTTAGTTTACAGG 58.324 40.741 0.00 0.00 0.00 4.00
2116 2372 6.189133 ACTACCTCTCTCTTAGTTTACAGGG 58.811 44.000 0.00 0.00 0.00 4.45
2117 2373 3.770388 ACCTCTCTCTTAGTTTACAGGGC 59.230 47.826 0.00 0.00 0.00 5.19
2118 2374 3.181485 CCTCTCTCTTAGTTTACAGGGCG 60.181 52.174 0.00 0.00 0.00 6.13
2119 2375 3.428532 TCTCTCTTAGTTTACAGGGCGT 58.571 45.455 0.00 0.00 0.00 5.68
2120 2376 3.192844 TCTCTCTTAGTTTACAGGGCGTG 59.807 47.826 5.50 5.50 0.00 5.34
2121 2377 2.000447 CTCTTAGTTTACAGGGCGTGC 59.000 52.381 7.17 0.00 0.00 5.34
2122 2378 1.345089 TCTTAGTTTACAGGGCGTGCA 59.655 47.619 7.17 0.00 0.00 4.57
2123 2379 2.027561 TCTTAGTTTACAGGGCGTGCAT 60.028 45.455 7.17 0.00 0.00 3.96
2124 2380 1.732941 TAGTTTACAGGGCGTGCATG 58.267 50.000 7.17 0.09 0.00 4.06
2125 2381 0.250727 AGTTTACAGGGCGTGCATGT 60.251 50.000 7.93 1.04 0.00 3.21
2126 2382 1.002659 AGTTTACAGGGCGTGCATGTA 59.997 47.619 7.93 0.00 0.00 2.29
2127 2383 1.129811 GTTTACAGGGCGTGCATGTAC 59.870 52.381 7.93 3.51 0.00 2.90
2128 2384 0.391927 TTACAGGGCGTGCATGTACC 60.392 55.000 8.45 10.47 0.00 3.34
2129 2385 2.246761 TACAGGGCGTGCATGTACCC 62.247 60.000 12.48 12.48 43.17 3.69
2130 2386 4.109675 AGGGCGTGCATGTACCCC 62.110 66.667 23.78 23.78 43.96 4.95
2131 2387 4.109675 GGGCGTGCATGTACCCCT 62.110 66.667 23.86 0.00 36.24 4.79
2132 2388 2.737881 GGGCGTGCATGTACCCCTA 61.738 63.158 23.86 0.00 36.24 3.53
2133 2389 1.222387 GGCGTGCATGTACCCCTAA 59.778 57.895 10.11 0.00 0.00 2.69
2134 2390 0.814010 GGCGTGCATGTACCCCTAAG 60.814 60.000 10.11 0.00 0.00 2.18
2135 2391 0.107848 GCGTGCATGTACCCCTAAGT 60.108 55.000 8.45 0.00 0.00 2.24
2136 2392 1.935933 CGTGCATGTACCCCTAAGTC 58.064 55.000 8.45 0.00 0.00 3.01
2137 2393 1.801395 CGTGCATGTACCCCTAAGTCG 60.801 57.143 8.45 0.00 0.00 4.18
2138 2394 1.206371 GTGCATGTACCCCTAAGTCGT 59.794 52.381 1.96 0.00 0.00 4.34
2139 2395 1.479323 TGCATGTACCCCTAAGTCGTC 59.521 52.381 0.00 0.00 0.00 4.20
2140 2396 1.479323 GCATGTACCCCTAAGTCGTCA 59.521 52.381 0.00 0.00 0.00 4.35
2141 2397 2.093869 GCATGTACCCCTAAGTCGTCAA 60.094 50.000 0.00 0.00 0.00 3.18
2142 2398 3.431766 GCATGTACCCCTAAGTCGTCAAT 60.432 47.826 0.00 0.00 0.00 2.57
2143 2399 4.766375 CATGTACCCCTAAGTCGTCAATT 58.234 43.478 0.00 0.00 0.00 2.32
2144 2400 4.895668 TGTACCCCTAAGTCGTCAATTT 57.104 40.909 0.00 0.00 0.00 1.82
2145 2401 4.571919 TGTACCCCTAAGTCGTCAATTTG 58.428 43.478 0.00 0.00 0.00 2.32
2146 2402 4.283978 TGTACCCCTAAGTCGTCAATTTGA 59.716 41.667 0.00 0.00 0.00 2.69
2147 2403 3.671716 ACCCCTAAGTCGTCAATTTGAC 58.328 45.455 17.76 17.76 43.65 3.18
2148 2404 3.007635 CCCCTAAGTCGTCAATTTGACC 58.992 50.000 20.87 10.06 44.20 4.02
2149 2405 3.558321 CCCCTAAGTCGTCAATTTGACCA 60.558 47.826 20.87 8.24 44.20 4.02
2150 2406 4.069304 CCCTAAGTCGTCAATTTGACCAA 58.931 43.478 20.87 9.06 44.20 3.67
2151 2407 4.083484 CCCTAAGTCGTCAATTTGACCAAC 60.083 45.833 20.87 18.36 44.20 3.77
2152 2408 3.982576 AAGTCGTCAATTTGACCAACC 57.017 42.857 20.87 8.54 44.20 3.77
2153 2409 3.208747 AGTCGTCAATTTGACCAACCT 57.791 42.857 20.87 10.32 44.20 3.50
2154 2410 4.345859 AGTCGTCAATTTGACCAACCTA 57.654 40.909 20.87 0.96 44.20 3.08
2155 2411 4.710324 AGTCGTCAATTTGACCAACCTAA 58.290 39.130 20.87 0.00 44.20 2.69
2156 2412 5.313712 AGTCGTCAATTTGACCAACCTAAT 58.686 37.500 20.87 4.38 44.20 1.73
2157 2413 6.469410 AGTCGTCAATTTGACCAACCTAATA 58.531 36.000 20.87 0.00 44.20 0.98
2158 2414 6.370718 AGTCGTCAATTTGACCAACCTAATAC 59.629 38.462 20.87 7.76 44.20 1.89
2159 2415 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
2160 2416 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
2161 2417 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
2162 2418 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
2163 2419 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
2164 2420 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
2165 2421 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
2166 2422 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
2167 2423 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
2267 2523 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
2268 2524 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
2269 2525 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
2270 2526 5.337788 AGGGTGATAAAATTGGCAACCTAA 58.662 37.500 0.00 0.00 46.13 2.69
2271 2527 5.422012 AGGGTGATAAAATTGGCAACCTAAG 59.578 40.000 0.00 0.00 46.13 2.18
2272 2528 5.186992 GGGTGATAAAATTGGCAACCTAAGT 59.813 40.000 0.00 0.00 35.26 2.24
2273 2529 6.378848 GGGTGATAAAATTGGCAACCTAAGTA 59.621 38.462 0.00 0.00 35.26 2.24
2274 2530 7.069455 GGGTGATAAAATTGGCAACCTAAGTAT 59.931 37.037 0.00 0.00 35.26 2.12
2275 2531 9.127277 GGTGATAAAATTGGCAACCTAAGTATA 57.873 33.333 0.00 0.00 0.00 1.47
2276 2532 9.946165 GTGATAAAATTGGCAACCTAAGTATAC 57.054 33.333 0.00 0.00 0.00 1.47
2277 2533 8.832521 TGATAAAATTGGCAACCTAAGTATACG 58.167 33.333 0.00 0.00 0.00 3.06
2278 2534 5.494632 AAATTGGCAACCTAAGTATACGC 57.505 39.130 0.00 0.00 0.00 4.42
2279 2535 2.212869 TGGCAACCTAAGTATACGCG 57.787 50.000 3.53 3.53 0.00 6.01
2280 2536 1.477700 TGGCAACCTAAGTATACGCGT 59.522 47.619 19.17 19.17 0.00 6.01
2281 2537 2.687425 TGGCAACCTAAGTATACGCGTA 59.313 45.455 22.94 22.94 0.00 4.42
2282 2538 3.243168 TGGCAACCTAAGTATACGCGTAG 60.243 47.826 24.78 11.28 0.00 3.51
2283 2539 3.303406 GCAACCTAAGTATACGCGTAGG 58.697 50.000 24.78 21.85 43.26 3.18
2284 2540 3.003689 GCAACCTAAGTATACGCGTAGGA 59.996 47.826 25.95 14.03 41.19 2.94
2285 2541 4.531332 CAACCTAAGTATACGCGTAGGAC 58.469 47.826 25.95 23.20 41.19 3.85
2286 2542 4.078639 ACCTAAGTATACGCGTAGGACT 57.921 45.455 25.95 24.76 41.19 3.85
2287 2543 4.455606 ACCTAAGTATACGCGTAGGACTT 58.544 43.478 33.62 33.62 41.19 3.01
2288 2544 4.274459 ACCTAAGTATACGCGTAGGACTTG 59.726 45.833 35.95 28.30 41.19 3.16
2289 2545 4.274459 CCTAAGTATACGCGTAGGACTTGT 59.726 45.833 35.95 24.46 41.19 3.16
2290 2546 5.466728 CCTAAGTATACGCGTAGGACTTGTA 59.533 44.000 35.95 25.38 41.19 2.41
2291 2547 5.818136 AAGTATACGCGTAGGACTTGTAA 57.182 39.130 32.23 10.34 0.00 2.41
2292 2548 5.818136 AGTATACGCGTAGGACTTGTAAA 57.182 39.130 24.78 0.00 0.00 2.01
2293 2549 5.573146 AGTATACGCGTAGGACTTGTAAAC 58.427 41.667 24.78 8.94 0.00 2.01
2294 2550 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
2295 2551 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
2296 2552 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
2297 2553 2.915463 CGCGTAGGACTTGTAAACTGAG 59.085 50.000 0.00 0.00 0.00 3.35
2298 2554 3.365666 CGCGTAGGACTTGTAAACTGAGA 60.366 47.826 0.00 0.00 0.00 3.27
2299 2555 3.919197 GCGTAGGACTTGTAAACTGAGAC 59.081 47.826 0.00 0.00 0.00 3.36
2300 2556 4.156915 CGTAGGACTTGTAAACTGAGACG 58.843 47.826 0.00 0.00 0.00 4.18
2301 2557 3.662247 AGGACTTGTAAACTGAGACGG 57.338 47.619 0.00 0.00 0.00 4.79
2302 2558 3.228453 AGGACTTGTAAACTGAGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
2303 2559 3.256136 AGGACTTGTAAACTGAGACGGAG 59.744 47.826 0.00 0.00 0.00 4.63
2304 2560 3.576648 GACTTGTAAACTGAGACGGAGG 58.423 50.000 0.00 0.00 0.00 4.30
2305 2561 2.299297 ACTTGTAAACTGAGACGGAGGG 59.701 50.000 0.00 0.00 0.00 4.30
2306 2562 2.297698 TGTAAACTGAGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
2307 2563 2.168496 TGTAAACTGAGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
2378 2643 4.772100 TGCATCTTATCTATGGGACGATCA 59.228 41.667 0.00 0.00 0.00 2.92
2593 2870 2.216782 TTAATGGCGTGCATCCCCCA 62.217 55.000 5.63 3.28 0.00 4.96
2613 2890 4.881920 CCATTTGGGAATCGTGTTTTCTT 58.118 39.130 0.00 0.00 40.01 2.52
2614 2891 4.923281 CCATTTGGGAATCGTGTTTTCTTC 59.077 41.667 0.00 0.00 40.01 2.87
2690 2999 2.632377 ACATGCTGGTTATCTTGGACG 58.368 47.619 0.00 0.00 0.00 4.79
2710 3019 1.503542 GAAGCATTGACCAGGCACG 59.496 57.895 0.00 0.00 0.00 5.34
2828 4466 0.250467 GTGTGGTGTGCTGATGTCCT 60.250 55.000 0.00 0.00 0.00 3.85
2835 4478 5.065218 GTGGTGTGCTGATGTCCTTAATTAG 59.935 44.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 7.734942 TCTTTCCTTGCAAACCAATAATTTCT 58.265 30.769 0.00 0.00 31.91 2.52
247 248 1.582937 CGCTAAGTCGTCGTCGCAT 60.583 57.895 0.00 0.00 36.96 4.73
469 472 2.677914 ACTTTCCTTCCTTGTTTGGGG 58.322 47.619 0.00 0.00 0.00 4.96
497 500 5.432885 ACGTTTGTTTCCTTTCGAATCAT 57.567 34.783 0.00 0.00 31.73 2.45
606 609 9.268268 TGAACGAATCAGAACTTTTTATACTGT 57.732 29.630 0.00 0.00 33.04 3.55
782 790 8.180706 TCTCGCTCTAGTCTCTACTTCTAATA 57.819 38.462 0.00 0.00 37.15 0.98
788 796 4.448210 CCTTCTCGCTCTAGTCTCTACTT 58.552 47.826 0.00 0.00 37.15 2.24
815 823 2.047655 TCCGCTACCGCAACAAGG 60.048 61.111 0.00 0.00 35.30 3.61
823 831 4.208686 GTGCTCCCTCCGCTACCG 62.209 72.222 0.00 0.00 0.00 4.02
900 911 2.817396 GTTGGAGGAGCAGCGAGC 60.817 66.667 0.00 0.00 46.19 5.03
1176 1249 1.289066 CTTGAAGACGTCCGAGGCA 59.711 57.895 13.01 0.50 0.00 4.75
1236 1309 4.057428 GCGGTGTCGAGGCAGACT 62.057 66.667 12.97 0.00 41.47 3.24
1730 1875 3.650298 TAGGTAGGCGCCACGGTCT 62.650 63.158 31.54 19.44 0.00 3.85
1776 1925 3.451890 GGAAGTAGGGAGGAAGGAAGAA 58.548 50.000 0.00 0.00 0.00 2.52
1786 1935 2.850695 ACACCTAGGGAAGTAGGGAG 57.149 55.000 14.81 0.00 43.67 4.30
1787 1936 2.245806 GGTACACCTAGGGAAGTAGGGA 59.754 54.545 14.81 0.00 43.67 4.20
1788 1937 2.675583 GGTACACCTAGGGAAGTAGGG 58.324 57.143 14.81 0.00 43.67 3.53
1789 1938 2.305009 CGGTACACCTAGGGAAGTAGG 58.695 57.143 14.81 4.68 44.77 3.18
1790 1939 2.305009 CCGGTACACCTAGGGAAGTAG 58.695 57.143 14.81 0.06 0.00 2.57
1791 1940 1.686115 GCCGGTACACCTAGGGAAGTA 60.686 57.143 14.81 10.09 0.00 2.24
1792 1941 0.974525 GCCGGTACACCTAGGGAAGT 60.975 60.000 14.81 11.12 0.00 3.01
1793 1942 1.821258 GCCGGTACACCTAGGGAAG 59.179 63.158 14.81 5.12 0.00 3.46
1794 1943 2.053865 CGCCGGTACACCTAGGGAA 61.054 63.158 14.81 0.00 0.00 3.97
1891 2118 0.458543 CCTTCAGTCCCATGTCGACG 60.459 60.000 11.62 0.00 35.33 5.12
1970 2226 9.828039 GTCTGCATATATATGGATTGAAGATGA 57.172 33.333 21.50 9.01 33.51 2.92
1971 2227 9.833917 AGTCTGCATATATATGGATTGAAGATG 57.166 33.333 21.50 7.07 33.51 2.90
1973 2229 9.662947 CAAGTCTGCATATATATGGATTGAAGA 57.337 33.333 21.50 10.84 33.51 2.87
1974 2230 9.445878 ACAAGTCTGCATATATATGGATTGAAG 57.554 33.333 24.31 15.14 33.51 3.02
1975 2231 9.223099 CACAAGTCTGCATATATATGGATTGAA 57.777 33.333 24.31 9.13 33.51 2.69
1976 2232 7.825761 CCACAAGTCTGCATATATATGGATTGA 59.174 37.037 24.31 15.07 33.51 2.57
1977 2233 7.609146 ACCACAAGTCTGCATATATATGGATTG 59.391 37.037 21.50 20.32 33.51 2.67
1978 2234 7.693132 ACCACAAGTCTGCATATATATGGATT 58.307 34.615 21.50 9.61 33.51 3.01
1979 2235 7.262990 ACCACAAGTCTGCATATATATGGAT 57.737 36.000 21.50 4.24 33.51 3.41
1980 2236 6.686484 ACCACAAGTCTGCATATATATGGA 57.314 37.500 21.50 18.45 34.32 3.41
1981 2237 7.445096 TGAAACCACAAGTCTGCATATATATGG 59.555 37.037 21.50 8.38 34.32 2.74
1982 2238 8.382030 TGAAACCACAAGTCTGCATATATATG 57.618 34.615 17.01 17.01 36.78 1.78
1983 2239 8.213679 ACTGAAACCACAAGTCTGCATATATAT 58.786 33.333 0.00 0.00 0.00 0.86
2017 2273 6.351711 AGCATAGCACTGAATAAATCTGACA 58.648 36.000 0.00 0.00 0.00 3.58
2072 2328 1.555967 AACATAAATTGCCACGGCCT 58.444 45.000 5.42 0.00 41.09 5.19
2089 2345 8.676401 CCTGTAAACTAAGAGAGAGGTAGTAAC 58.324 40.741 0.00 0.00 0.00 2.50
2091 2347 7.344913 CCCTGTAAACTAAGAGAGAGGTAGTA 58.655 42.308 0.00 0.00 0.00 1.82
2092 2348 6.189133 CCCTGTAAACTAAGAGAGAGGTAGT 58.811 44.000 0.00 0.00 0.00 2.73
2093 2349 5.068067 GCCCTGTAAACTAAGAGAGAGGTAG 59.932 48.000 0.00 0.00 0.00 3.18
2094 2350 4.954826 GCCCTGTAAACTAAGAGAGAGGTA 59.045 45.833 0.00 0.00 0.00 3.08
2095 2351 3.770388 GCCCTGTAAACTAAGAGAGAGGT 59.230 47.826 0.00 0.00 0.00 3.85
2096 2352 3.181485 CGCCCTGTAAACTAAGAGAGAGG 60.181 52.174 0.00 0.00 0.00 3.69
2097 2353 3.444388 ACGCCCTGTAAACTAAGAGAGAG 59.556 47.826 0.00 0.00 0.00 3.20
2098 2354 3.192844 CACGCCCTGTAAACTAAGAGAGA 59.807 47.826 0.00 0.00 0.00 3.10
2099 2355 3.512680 CACGCCCTGTAAACTAAGAGAG 58.487 50.000 0.00 0.00 0.00 3.20
2100 2356 2.353406 GCACGCCCTGTAAACTAAGAGA 60.353 50.000 0.00 0.00 0.00 3.10
2101 2357 2.000447 GCACGCCCTGTAAACTAAGAG 59.000 52.381 0.00 0.00 0.00 2.85
2102 2358 1.345089 TGCACGCCCTGTAAACTAAGA 59.655 47.619 0.00 0.00 0.00 2.10
2103 2359 1.803334 TGCACGCCCTGTAAACTAAG 58.197 50.000 0.00 0.00 0.00 2.18
2104 2360 2.080693 CATGCACGCCCTGTAAACTAA 58.919 47.619 0.00 0.00 0.00 2.24
2105 2361 1.002659 ACATGCACGCCCTGTAAACTA 59.997 47.619 0.00 0.00 0.00 2.24
2106 2362 0.250727 ACATGCACGCCCTGTAAACT 60.251 50.000 0.00 0.00 0.00 2.66
2107 2363 1.129811 GTACATGCACGCCCTGTAAAC 59.870 52.381 0.00 0.00 0.00 2.01
2108 2364 1.444836 GTACATGCACGCCCTGTAAA 58.555 50.000 0.00 0.00 0.00 2.01
2109 2365 0.391927 GGTACATGCACGCCCTGTAA 60.392 55.000 0.00 0.00 0.00 2.41
2110 2366 1.219664 GGTACATGCACGCCCTGTA 59.780 57.895 0.00 0.00 0.00 2.74
2111 2367 2.046314 GGTACATGCACGCCCTGT 60.046 61.111 0.00 0.00 0.00 4.00
2112 2368 2.824041 GGGTACATGCACGCCCTG 60.824 66.667 1.68 0.00 38.12 4.45
2113 2369 4.109675 GGGGTACATGCACGCCCT 62.110 66.667 19.19 0.00 43.82 5.19
2116 2372 0.107848 ACTTAGGGGTACATGCACGC 60.108 55.000 4.56 4.56 0.00 5.34
2117 2373 1.801395 CGACTTAGGGGTACATGCACG 60.801 57.143 0.00 0.00 0.00 5.34
2118 2374 1.206371 ACGACTTAGGGGTACATGCAC 59.794 52.381 0.00 0.00 0.00 4.57
2119 2375 1.479323 GACGACTTAGGGGTACATGCA 59.521 52.381 0.00 0.00 0.00 3.96
2120 2376 1.479323 TGACGACTTAGGGGTACATGC 59.521 52.381 0.00 0.00 0.00 4.06
2121 2377 3.880047 TTGACGACTTAGGGGTACATG 57.120 47.619 0.00 0.00 0.00 3.21
2122 2378 5.046159 TCAAATTGACGACTTAGGGGTACAT 60.046 40.000 0.00 0.00 0.00 2.29
2123 2379 4.283978 TCAAATTGACGACTTAGGGGTACA 59.716 41.667 0.00 0.00 0.00 2.90
2124 2380 4.628766 GTCAAATTGACGACTTAGGGGTAC 59.371 45.833 10.58 0.00 37.67 3.34
2125 2381 4.824289 GTCAAATTGACGACTTAGGGGTA 58.176 43.478 10.58 0.00 37.67 3.69
2126 2382 3.671716 GTCAAATTGACGACTTAGGGGT 58.328 45.455 10.58 0.00 37.67 4.95
2137 2393 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
2138 2394 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
2139 2395 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
2140 2396 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
2141 2397 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
2241 2497 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
2242 2498 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
2243 2499 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
2244 2500 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
2245 2501 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
2246 2502 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
2247 2503 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
2248 2504 5.186992 ACTTAGGTTGCCAATTTTATCACCC 59.813 40.000 0.00 0.00 0.00 4.61
2249 2505 6.280855 ACTTAGGTTGCCAATTTTATCACC 57.719 37.500 0.00 0.00 0.00 4.02
2250 2506 9.946165 GTATACTTAGGTTGCCAATTTTATCAC 57.054 33.333 0.00 0.00 0.00 3.06
2251 2507 8.832521 CGTATACTTAGGTTGCCAATTTTATCA 58.167 33.333 0.56 0.00 0.00 2.15
2252 2508 7.801783 GCGTATACTTAGGTTGCCAATTTTATC 59.198 37.037 0.56 0.00 0.00 1.75
2253 2509 7.519328 CGCGTATACTTAGGTTGCCAATTTTAT 60.519 37.037 0.00 0.00 0.00 1.40
2254 2510 6.238157 CGCGTATACTTAGGTTGCCAATTTTA 60.238 38.462 0.00 0.00 0.00 1.52
2255 2511 5.448089 CGCGTATACTTAGGTTGCCAATTTT 60.448 40.000 0.00 0.00 0.00 1.82
2256 2512 4.034742 CGCGTATACTTAGGTTGCCAATTT 59.965 41.667 0.00 0.00 0.00 1.82
2257 2513 3.558418 CGCGTATACTTAGGTTGCCAATT 59.442 43.478 0.00 0.00 0.00 2.32
2258 2514 3.128349 CGCGTATACTTAGGTTGCCAAT 58.872 45.455 0.00 0.00 0.00 3.16
2259 2515 2.094078 ACGCGTATACTTAGGTTGCCAA 60.094 45.455 11.67 0.00 0.00 4.52
2260 2516 1.477700 ACGCGTATACTTAGGTTGCCA 59.522 47.619 11.67 0.00 0.00 4.92
2261 2517 2.214387 ACGCGTATACTTAGGTTGCC 57.786 50.000 11.67 0.00 0.00 4.52
2262 2518 3.003689 TCCTACGCGTATACTTAGGTTGC 59.996 47.826 20.91 4.87 33.93 4.17
2263 2519 4.274459 AGTCCTACGCGTATACTTAGGTTG 59.726 45.833 20.91 3.59 33.93 3.77
2264 2520 4.455606 AGTCCTACGCGTATACTTAGGTT 58.544 43.478 20.91 8.23 33.93 3.50
2265 2521 4.078639 AGTCCTACGCGTATACTTAGGT 57.921 45.455 20.91 0.00 33.93 3.08
2266 2522 4.274459 ACAAGTCCTACGCGTATACTTAGG 59.726 45.833 30.65 24.59 33.57 2.69
2267 2523 5.415415 ACAAGTCCTACGCGTATACTTAG 57.585 43.478 30.65 26.61 0.00 2.18
2268 2524 6.918892 TTACAAGTCCTACGCGTATACTTA 57.081 37.500 30.65 20.89 0.00 2.24
2269 2525 5.818136 TTACAAGTCCTACGCGTATACTT 57.182 39.130 28.00 28.00 0.00 2.24
2270 2526 5.355350 AGTTTACAAGTCCTACGCGTATACT 59.645 40.000 20.91 21.57 0.00 2.12
2271 2527 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
2272 2528 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
2273 2529 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
2274 2530 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
2275 2531 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
2276 2532 2.915463 CTCAGTTTACAAGTCCTACGCG 59.085 50.000 3.53 3.53 0.00 6.01
2277 2533 3.919197 GTCTCAGTTTACAAGTCCTACGC 59.081 47.826 0.00 0.00 0.00 4.42
2278 2534 4.156915 CGTCTCAGTTTACAAGTCCTACG 58.843 47.826 0.00 0.00 0.00 3.51
2279 2535 4.217118 TCCGTCTCAGTTTACAAGTCCTAC 59.783 45.833 0.00 0.00 0.00 3.18
2280 2536 4.401022 TCCGTCTCAGTTTACAAGTCCTA 58.599 43.478 0.00 0.00 0.00 2.94
2281 2537 3.228453 TCCGTCTCAGTTTACAAGTCCT 58.772 45.455 0.00 0.00 0.00 3.85
2282 2538 3.576648 CTCCGTCTCAGTTTACAAGTCC 58.423 50.000 0.00 0.00 0.00 3.85
2283 2539 3.576648 CCTCCGTCTCAGTTTACAAGTC 58.423 50.000 0.00 0.00 0.00 3.01
2284 2540 2.299297 CCCTCCGTCTCAGTTTACAAGT 59.701 50.000 0.00 0.00 0.00 3.16
2285 2541 2.561419 TCCCTCCGTCTCAGTTTACAAG 59.439 50.000 0.00 0.00 0.00 3.16
2286 2542 2.561419 CTCCCTCCGTCTCAGTTTACAA 59.439 50.000 0.00 0.00 0.00 2.41
2287 2543 2.168496 CTCCCTCCGTCTCAGTTTACA 58.832 52.381 0.00 0.00 0.00 2.41
2288 2544 2.169330 ACTCCCTCCGTCTCAGTTTAC 58.831 52.381 0.00 0.00 0.00 2.01
2289 2545 2.599408 ACTCCCTCCGTCTCAGTTTA 57.401 50.000 0.00 0.00 0.00 2.01
2290 2546 2.448453 CTACTCCCTCCGTCTCAGTTT 58.552 52.381 0.00 0.00 0.00 2.66
2291 2547 1.956159 GCTACTCCCTCCGTCTCAGTT 60.956 57.143 0.00 0.00 0.00 3.16
2292 2548 0.394625 GCTACTCCCTCCGTCTCAGT 60.395 60.000 0.00 0.00 0.00 3.41
2293 2549 0.106918 AGCTACTCCCTCCGTCTCAG 60.107 60.000 0.00 0.00 0.00 3.35
2294 2550 0.331954 AAGCTACTCCCTCCGTCTCA 59.668 55.000 0.00 0.00 0.00 3.27
2295 2551 1.026584 GAAGCTACTCCCTCCGTCTC 58.973 60.000 0.00 0.00 0.00 3.36
2296 2552 0.331954 TGAAGCTACTCCCTCCGTCT 59.668 55.000 0.00 0.00 0.00 4.18
2297 2553 1.338655 GATGAAGCTACTCCCTCCGTC 59.661 57.143 0.00 0.00 0.00 4.79
2298 2554 1.063567 AGATGAAGCTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
2299 2555 1.698506 AGATGAAGCTACTCCCTCCG 58.301 55.000 0.00 0.00 0.00 4.63
2300 2556 5.420739 CCTAATAGATGAAGCTACTCCCTCC 59.579 48.000 0.00 0.00 0.00 4.30
2301 2557 5.420739 CCCTAATAGATGAAGCTACTCCCTC 59.579 48.000 0.00 0.00 0.00 4.30
2302 2558 5.337788 CCCTAATAGATGAAGCTACTCCCT 58.662 45.833 0.00 0.00 0.00 4.20
2303 2559 4.468153 CCCCTAATAGATGAAGCTACTCCC 59.532 50.000 0.00 0.00 0.00 4.30
2304 2560 5.088026 ACCCCTAATAGATGAAGCTACTCC 58.912 45.833 0.00 0.00 0.00 3.85
2305 2561 7.778185 TTACCCCTAATAGATGAAGCTACTC 57.222 40.000 0.00 0.00 0.00 2.59
2306 2562 7.956315 TGATTACCCCTAATAGATGAAGCTACT 59.044 37.037 0.00 0.00 0.00 2.57
2307 2563 8.135382 TGATTACCCCTAATAGATGAAGCTAC 57.865 38.462 0.00 0.00 0.00 3.58
2378 2643 0.748450 TACCTCCCGCGATTCGATTT 59.252 50.000 8.23 0.00 41.67 2.17
2390 2655 8.157476 TGAAGCTGATTAATTAAGATACCTCCC 58.843 37.037 3.94 0.00 0.00 4.30
2593 2870 5.772521 CAGAAGAAAACACGATTCCCAAAT 58.227 37.500 0.00 0.00 0.00 2.32
2613 2890 2.861274 TCATCACAAACACCATGCAGA 58.139 42.857 0.00 0.00 0.00 4.26
2614 2891 3.428452 GGATCATCACAAACACCATGCAG 60.428 47.826 0.00 0.00 0.00 4.41
2664 2972 5.045213 TCCAAGATAACCAGCATGTAGGAAA 60.045 40.000 11.80 1.12 0.00 3.13
2690 2999 1.304381 TGCCTGGTCAATGCTTCCC 60.304 57.895 0.00 0.00 0.00 3.97
2710 3019 3.592898 AACGGGGAAATCAAGCAAATC 57.407 42.857 0.00 0.00 0.00 2.17
2835 4478 5.105752 AGCGACTGATAGAGTGATTCAAAC 58.894 41.667 0.00 0.00 33.83 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.