Multiple sequence alignment - TraesCS1B01G302800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G302800 chr1B 100.000 3077 0 0 1 3077 523216501 523213425 0.000000e+00 5683.0
1 TraesCS1B01G302800 chr1B 92.727 1320 62 17 1787 3077 523240159 523238845 0.000000e+00 1875.0
2 TraesCS1B01G302800 chr1B 89.937 477 21 14 1 454 523246302 523245830 9.500000e-165 590.0
3 TraesCS1B01G302800 chr1B 85.546 339 33 11 1787 2111 523245546 523245210 1.060000e-89 340.0
4 TraesCS1B01G302800 chr1B 87.241 290 20 5 504 792 523245817 523245544 6.400000e-82 315.0
5 TraesCS1B01G302800 chr1D 83.341 2215 246 71 1 2152 396331399 396333553 0.000000e+00 1932.0
6 TraesCS1B01G302800 chr1D 81.277 940 132 27 2174 3074 390399350 390400284 0.000000e+00 721.0
7 TraesCS1B01G302800 chr1A 86.741 626 44 20 505 1124 489165761 489165169 0.000000e+00 660.0
8 TraesCS1B01G302800 chr1A 82.581 620 85 15 1552 2150 489164802 489164185 2.720000e-145 525.0
9 TraesCS1B01G302800 chr1A 83.850 452 48 16 1 437 489167317 489166876 1.030000e-109 407.0
10 TraesCS1B01G302800 chr1A 80.606 330 60 4 1167 1494 489165158 489164831 5.090000e-63 252.0
11 TraesCS1B01G302800 chr1A 79.570 93 14 5 138 228 49964123 49964212 9.210000e-06 62.1
12 TraesCS1B01G302800 chr2D 81.897 116 19 2 23 138 613335721 613335608 2.530000e-16 97.1
13 TraesCS1B01G302800 chr4A 79.167 96 18 2 138 232 612109668 612109762 7.120000e-07 65.8
14 TraesCS1B01G302800 chr3D 83.077 65 11 0 185 249 611258524 611258460 3.310000e-05 60.2
15 TraesCS1B01G302800 chr7A 83.077 65 8 2 149 213 261888362 261888301 4.290000e-04 56.5
16 TraesCS1B01G302800 chr6A 79.487 78 16 0 135 212 609318915 609318992 4.290000e-04 56.5
17 TraesCS1B01G302800 chr5D 81.429 70 12 1 184 253 549305056 549304988 4.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G302800 chr1B 523213425 523216501 3076 True 5683 5683 100.000000 1 3077 1 chr1B.!!$R1 3076
1 TraesCS1B01G302800 chr1B 523238845 523240159 1314 True 1875 1875 92.727000 1787 3077 1 chr1B.!!$R2 1290
2 TraesCS1B01G302800 chr1B 523245210 523246302 1092 True 415 590 87.574667 1 2111 3 chr1B.!!$R3 2110
3 TraesCS1B01G302800 chr1D 396331399 396333553 2154 False 1932 1932 83.341000 1 2152 1 chr1D.!!$F2 2151
4 TraesCS1B01G302800 chr1D 390399350 390400284 934 False 721 721 81.277000 2174 3074 1 chr1D.!!$F1 900
5 TraesCS1B01G302800 chr1A 489164185 489167317 3132 True 461 660 83.444500 1 2150 4 chr1A.!!$R1 2149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 1974 0.546988 AACCCCACTCCTCAGGTACC 60.547 60.0 2.73 2.73 30.63 3.34 F
1240 2371 0.032815 CCGCACCGGGAACAATTTTT 59.967 50.0 6.32 0.00 44.15 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 2944 0.318441 CTGACCACGTCTGTCCACAT 59.682 55.0 11.19 0.0 33.15 3.21 R
3004 4196 0.473755 TGACCCTGAAAAGCAGCTGA 59.526 50.0 20.43 0.0 43.50 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.141088 TGTCCGGTATAGTAGTTGAGGGAT 60.141 45.833 0.00 0.00 0.00 3.85
94 95 7.177921 CCGGTATAGTAGTTGAGGGATGAAATA 59.822 40.741 0.00 0.00 0.00 1.40
110 111 8.378565 GGGATGAAATATAGACTCCATGAAGAA 58.621 37.037 0.00 0.00 0.00 2.52
278 304 9.959775 TGTTTTAAAATTGTTCGTGACATTTTC 57.040 25.926 3.52 4.42 39.58 2.29
475 1580 9.953697 AAATGTTTCCAATGTTCATGAAAAATG 57.046 25.926 10.35 8.27 27.90 2.32
476 1581 8.680039 ATGTTTCCAATGTTCATGAAAAATGT 57.320 26.923 10.35 0.00 0.00 2.71
477 1582 9.775854 ATGTTTCCAATGTTCATGAAAAATGTA 57.224 25.926 10.35 0.00 0.00 2.29
478 1583 9.039870 TGTTTCCAATGTTCATGAAAAATGTAC 57.960 29.630 10.35 6.77 0.00 2.90
479 1584 9.039870 GTTTCCAATGTTCATGAAAAATGTACA 57.960 29.630 10.35 2.93 34.65 2.90
480 1585 9.605275 TTTCCAATGTTCATGAAAAATGTACAA 57.395 25.926 10.35 0.00 34.04 2.41
481 1586 8.586570 TCCAATGTTCATGAAAAATGTACAAC 57.413 30.769 10.35 0.00 34.04 3.32
482 1587 7.380870 TCCAATGTTCATGAAAAATGTACAACG 59.619 33.333 10.35 0.00 34.04 4.10
483 1588 7.359097 CCAATGTTCATGAAAAATGTACAACGG 60.359 37.037 10.35 4.23 34.04 4.44
484 1589 6.137794 TGTTCATGAAAAATGTACAACGGT 57.862 33.333 10.35 0.00 0.00 4.83
485 1590 6.202937 TGTTCATGAAAAATGTACAACGGTC 58.797 36.000 10.35 0.00 0.00 4.79
486 1591 6.038825 TGTTCATGAAAAATGTACAACGGTCT 59.961 34.615 10.35 0.00 0.00 3.85
487 1592 5.996219 TCATGAAAAATGTACAACGGTCTG 58.004 37.500 0.00 0.00 0.00 3.51
488 1593 5.529430 TCATGAAAAATGTACAACGGTCTGT 59.471 36.000 0.00 0.00 0.00 3.41
489 1594 5.821516 TGAAAAATGTACAACGGTCTGTT 57.178 34.783 0.00 0.00 43.09 3.16
490 1595 6.197364 TGAAAAATGTACAACGGTCTGTTT 57.803 33.333 0.00 0.00 39.29 2.83
491 1596 6.622549 TGAAAAATGTACAACGGTCTGTTTT 58.377 32.000 0.00 0.00 39.29 2.43
492 1597 7.091443 TGAAAAATGTACAACGGTCTGTTTTT 58.909 30.769 0.00 5.85 39.29 1.94
641 1752 1.505151 TATCTGGCCCAGCAACCCAA 61.505 55.000 5.66 0.00 0.00 4.12
678 1789 1.068741 GTAGGAATCGCACCGGATCTT 59.931 52.381 9.46 0.00 0.00 2.40
684 1798 1.066587 CGCACCGGATCTTCCTCTC 59.933 63.158 9.46 0.00 33.30 3.20
720 1834 2.361119 CCGCCACTAGTATAAGACAGCA 59.639 50.000 0.00 0.00 0.00 4.41
722 1836 3.718815 GCCACTAGTATAAGACAGCACC 58.281 50.000 0.00 0.00 0.00 5.01
723 1837 3.795826 GCCACTAGTATAAGACAGCACCG 60.796 52.174 0.00 0.00 0.00 4.94
724 1838 3.243434 CCACTAGTATAAGACAGCACCGG 60.243 52.174 0.00 0.00 0.00 5.28
725 1839 3.630769 CACTAGTATAAGACAGCACCGGA 59.369 47.826 9.46 0.00 0.00 5.14
726 1840 4.278669 CACTAGTATAAGACAGCACCGGAT 59.721 45.833 9.46 0.00 0.00 4.18
737 1851 1.077716 CACCGGATCTCCCCAAACC 60.078 63.158 9.46 0.00 0.00 3.27
742 1856 0.624795 GGATCTCCCCAAACCTCCCT 60.625 60.000 0.00 0.00 0.00 4.20
820 1934 6.058183 CCGATAGTCTCCATTCCAGAAATTT 58.942 40.000 0.00 0.00 0.00 1.82
828 1942 4.021544 TCCATTCCAGAAATTTTCGGGTTG 60.022 41.667 22.40 19.86 44.18 3.77
860 1974 0.546988 AACCCCACTCCTCAGGTACC 60.547 60.000 2.73 2.73 30.63 3.34
938 2057 6.183360 CCAAGAGAAGAAACGAGAATCATCAC 60.183 42.308 0.00 0.00 33.17 3.06
941 2060 5.174395 AGAAGAAACGAGAATCATCACCAG 58.826 41.667 0.00 0.00 33.17 4.00
954 2076 1.795768 TCACCAGCATTCAACGAGTC 58.204 50.000 0.00 0.00 0.00 3.36
968 2090 3.388345 ACGAGTCCCTTGTTCTTTCTC 57.612 47.619 0.00 0.00 0.00 2.87
969 2091 2.966516 ACGAGTCCCTTGTTCTTTCTCT 59.033 45.455 0.00 0.00 0.00 3.10
990 2112 1.068588 TGATTATCAGGAAGTCCGCCG 59.931 52.381 0.00 0.00 42.08 6.46
1065 2187 1.002868 CCCCAGACACTTCAGCCTG 60.003 63.158 0.00 0.00 0.00 4.85
1069 2191 1.072159 AGACACTTCAGCCTGCACC 59.928 57.895 0.00 0.00 0.00 5.01
1071 2193 2.281070 CACTTCAGCCTGCACCGT 60.281 61.111 0.00 0.00 0.00 4.83
1072 2194 1.005037 CACTTCAGCCTGCACCGTA 60.005 57.895 0.00 0.00 0.00 4.02
1077 2199 0.541392 TCAGCCTGCACCGTATGAAT 59.459 50.000 0.00 0.00 0.00 2.57
1080 2202 1.166531 GCCTGCACCGTATGAATCCC 61.167 60.000 0.00 0.00 0.00 3.85
1086 2208 1.946768 CACCGTATGAATCCCGCAAAT 59.053 47.619 0.00 0.00 0.00 2.32
1089 2211 3.181491 ACCGTATGAATCCCGCAAATTTG 60.181 43.478 14.03 14.03 0.00 2.32
1099 2221 2.555199 CCGCAAATTTGTTTCACCCAA 58.445 42.857 19.03 0.00 0.00 4.12
1102 2224 3.274288 GCAAATTTGTTTCACCCAACCA 58.726 40.909 19.03 0.00 0.00 3.67
1115 2243 1.966451 CAACCAGGTCAGCGGTTCC 60.966 63.158 0.00 0.00 43.72 3.62
1119 2247 4.379243 AGGTCAGCGGTTCCAGCG 62.379 66.667 8.07 0.00 42.73 5.18
1127 2258 2.613506 CGGTTCCAGCGGTTCAACC 61.614 63.158 12.58 12.58 35.16 3.77
1169 2300 1.476007 CCCCCTGCTCTATCCTTCGG 61.476 65.000 0.00 0.00 0.00 4.30
1194 2325 3.579685 GGCAAGAAGGGCGAACTC 58.420 61.111 0.00 0.00 0.00 3.01
1239 2370 1.663173 CCGCACCGGGAACAATTTT 59.337 52.632 6.32 0.00 44.15 1.82
1240 2371 0.032815 CCGCACCGGGAACAATTTTT 59.967 50.000 6.32 0.00 44.15 1.94
1254 2385 3.849064 TTTTTGGCCGTGGACCAG 58.151 55.556 0.00 0.00 38.73 4.00
1257 2388 0.693622 TTTTGGCCGTGGACCAGATA 59.306 50.000 0.00 0.00 38.73 1.98
1265 2396 0.466124 GTGGACCAGATAGGCAGGAC 59.534 60.000 0.00 0.00 43.14 3.85
1279 2410 2.549349 GGCAGGACCTTCTTTTACGACA 60.549 50.000 0.00 0.00 34.51 4.35
1280 2411 2.479275 GCAGGACCTTCTTTTACGACAC 59.521 50.000 0.00 0.00 0.00 3.67
1281 2412 3.802675 GCAGGACCTTCTTTTACGACACT 60.803 47.826 0.00 0.00 0.00 3.55
1290 2421 0.308684 TTTACGACACTGACTCGCGT 59.691 50.000 5.77 0.00 38.81 6.01
1292 2423 0.110509 TACGACACTGACTCGCGTTC 60.111 55.000 5.77 4.62 36.51 3.95
1313 2444 2.440796 CCGCACTGGAATGCCCAT 60.441 61.111 0.00 0.00 45.57 4.00
1318 2449 1.771565 CACTGGAATGCCCATGATGT 58.228 50.000 0.00 0.00 45.57 3.06
1329 2460 0.387929 CCATGATGTGCAAGCCCATC 59.612 55.000 10.05 10.05 38.34 3.51
1332 2463 1.107945 TGATGTGCAAGCCCATCATG 58.892 50.000 14.72 0.00 41.77 3.07
1338 2469 1.825191 CAAGCCCATCATGGACCCG 60.825 63.158 4.75 0.00 40.96 5.28
1345 2476 1.051008 CATCATGGACCCGATCTCCA 58.949 55.000 4.76 4.76 42.17 3.86
1353 2484 1.153168 CCCGATCTCCATTGCCGTT 60.153 57.895 0.00 0.00 0.00 4.44
1356 2487 0.744414 CGATCTCCATTGCCGTTGGT 60.744 55.000 0.00 0.00 35.64 3.67
1365 2496 3.050275 GCCGTTGGTGACAGCCTC 61.050 66.667 1.47 0.00 44.54 4.70
1380 2511 2.005960 GCCTCTACGTCATGAGCGGT 62.006 60.000 17.75 9.91 0.00 5.68
1391 2522 4.484872 GAGCGGTAACCCTGGCCC 62.485 72.222 0.00 0.00 0.00 5.80
1394 2525 4.462280 CGGTAACCCTGGCCCGTC 62.462 72.222 0.00 0.00 35.78 4.79
1407 2538 4.473520 CCGTCGCCTGGGAAGCAT 62.474 66.667 0.00 0.00 0.00 3.79
1423 2554 0.679002 GCATTGCTTCCAGGCTCTCA 60.679 55.000 0.16 0.00 0.00 3.27
1429 2560 0.179089 CTTCCAGGCTCTCATCCACG 60.179 60.000 0.00 0.00 0.00 4.94
1430 2561 1.617018 TTCCAGGCTCTCATCCACGG 61.617 60.000 0.00 0.00 0.00 4.94
1437 2568 4.473520 CTCATCCACGGCCGCCTT 62.474 66.667 28.58 1.81 0.00 4.35
1450 2581 2.669569 GCCTTCCTGCAAGCGACA 60.670 61.111 0.00 0.00 0.00 4.35
1453 2584 1.597854 CTTCCTGCAAGCGACACCA 60.598 57.895 0.00 0.00 0.00 4.17
1455 2586 0.537143 TTCCTGCAAGCGACACCAAT 60.537 50.000 0.00 0.00 0.00 3.16
1458 2589 0.806868 CTGCAAGCGACACCAATGAT 59.193 50.000 0.00 0.00 0.00 2.45
1473 2604 3.565482 CCAATGATTGGTCCTGGTATTCG 59.435 47.826 15.99 0.00 45.93 3.34
1476 2607 2.238646 TGATTGGTCCTGGTATTCGCTT 59.761 45.455 0.00 0.00 0.00 4.68
1482 2613 1.154205 CCTGGTATTCGCTTCAGCCG 61.154 60.000 0.00 0.00 37.91 5.52
1485 2616 1.813753 GTATTCGCTTCAGCCGCCA 60.814 57.895 0.00 0.00 37.91 5.69
1494 2625 4.785453 CAGCCGCCACCTCCCTTC 62.785 72.222 0.00 0.00 0.00 3.46
1497 2628 4.760047 CCGCCACCTCCCTTCGTG 62.760 72.222 0.00 0.00 0.00 4.35
1498 2629 3.691342 CGCCACCTCCCTTCGTGA 61.691 66.667 0.00 0.00 31.36 4.35
1511 2642 1.080366 TCGTGAACGACATTCCCCG 60.080 57.895 0.50 0.00 44.22 5.73
1512 2643 2.736682 CGTGAACGACATTCCCCGC 61.737 63.158 0.00 0.00 43.02 6.13
1513 2644 1.375523 GTGAACGACATTCCCCGCT 60.376 57.895 0.00 0.00 36.36 5.52
1514 2645 0.953960 GTGAACGACATTCCCCGCTT 60.954 55.000 0.00 0.00 36.36 4.68
1516 2647 1.366854 GAACGACATTCCCCGCTTCC 61.367 60.000 0.00 0.00 0.00 3.46
1521 2652 0.331278 ACATTCCCCGCTTCCATGAA 59.669 50.000 0.00 0.00 0.00 2.57
1523 2654 0.918983 ATTCCCCGCTTCCATGAAGA 59.081 50.000 7.98 0.00 41.71 2.87
1524 2655 0.918983 TTCCCCGCTTCCATGAAGAT 59.081 50.000 7.98 0.00 41.71 2.40
1526 2657 0.181114 CCCCGCTTCCATGAAGATGA 59.819 55.000 7.98 0.00 41.71 2.92
1529 2660 1.134280 CCGCTTCCATGAAGATGAGGT 60.134 52.381 7.98 0.00 41.71 3.85
1530 2661 2.208431 CGCTTCCATGAAGATGAGGTC 58.792 52.381 7.98 0.00 41.71 3.85
1531 2662 2.419159 CGCTTCCATGAAGATGAGGTCA 60.419 50.000 7.98 0.00 41.71 4.02
1532 2663 3.614092 GCTTCCATGAAGATGAGGTCAA 58.386 45.455 7.98 0.00 41.71 3.18
1539 2670 4.916041 TGAAGATGAGGTCAAATCCAGT 57.084 40.909 0.00 0.00 0.00 4.00
1543 2674 1.522668 TGAGGTCAAATCCAGTTGCG 58.477 50.000 0.00 0.00 0.00 4.85
1545 2676 0.110486 AGGTCAAATCCAGTTGCGGT 59.890 50.000 0.00 0.00 0.00 5.68
1548 2679 1.069227 GTCAAATCCAGTTGCGGTGAC 60.069 52.381 0.00 0.00 0.00 3.67
1562 2693 2.120940 TGACGTTCCAGCCCCCTA 59.879 61.111 0.00 0.00 0.00 3.53
1579 2710 2.104111 CCCTATGAAATCGGTGCCTACA 59.896 50.000 0.00 0.00 0.00 2.74
1581 2712 3.181465 CCTATGAAATCGGTGCCTACACT 60.181 47.826 0.00 0.00 46.57 3.55
1589 2720 0.889186 GGTGCCTACACTGTGGTTGG 60.889 60.000 13.09 11.43 46.57 3.77
1593 2724 0.250124 CCTACACTGTGGTTGGCGAA 60.250 55.000 13.09 0.00 0.00 4.70
1606 2737 0.178767 TGGCGAATCACAGATCTGGG 59.821 55.000 26.08 23.04 34.69 4.45
1615 2746 3.033909 TCACAGATCTGGGTATCCACAG 58.966 50.000 24.11 0.00 38.32 3.66
1617 2748 1.764723 CAGATCTGGGTATCCACAGCA 59.235 52.381 15.38 0.00 38.32 4.41
1620 2751 0.252696 TCTGGGTATCCACAGCAGGT 60.253 55.000 0.00 0.00 38.32 4.00
1643 2774 2.117137 CGGCACATACTCGTATGACAC 58.883 52.381 20.52 10.55 44.22 3.67
1644 2775 2.223502 CGGCACATACTCGTATGACACT 60.224 50.000 20.52 0.00 44.22 3.55
1646 2777 3.428999 GGCACATACTCGTATGACACTGT 60.429 47.826 20.52 0.00 44.22 3.55
1653 2784 8.278409 CATACTCGTATGACACTGTGAGTGGT 62.278 46.154 15.86 4.89 44.22 4.16
1744 2875 0.754957 CTGGTTTGGCTTCACACCCA 60.755 55.000 0.00 0.00 39.77 4.51
1747 2878 0.820871 GTTTGGCTTCACACCCAACA 59.179 50.000 0.00 0.00 40.60 3.33
1758 2889 1.202557 ACACCCAACAATTTGCAGCTG 60.203 47.619 10.11 10.11 0.00 4.24
1782 2913 1.305297 ATCGGACCTCACTGCCTCA 60.305 57.895 0.00 0.00 0.00 3.86
1784 2915 1.142748 CGGACCTCACTGCCTCATC 59.857 63.158 0.00 0.00 0.00 2.92
1813 2944 1.153449 CCGCCCGTTCTGCAGAATA 60.153 57.895 30.65 8.35 36.33 1.75
1828 2959 3.190079 CAGAATATGTGGACAGACGTGG 58.810 50.000 0.00 0.00 0.00 4.94
1829 2960 2.832129 AGAATATGTGGACAGACGTGGT 59.168 45.455 0.00 0.00 0.00 4.16
1864 2995 2.322638 GACCCTGAGAGATGCCAGCC 62.323 65.000 0.00 0.00 0.00 4.85
1866 2997 1.446791 CCTGAGAGATGCCAGCCTC 59.553 63.158 0.00 0.00 0.00 4.70
1908 3039 1.200948 GTCTGCATTGCCAGGTTCTTC 59.799 52.381 6.12 0.00 33.64 2.87
1909 3040 0.169672 CTGCATTGCCAGGTTCTTCG 59.830 55.000 6.12 0.00 0.00 3.79
1911 3042 1.271108 TGCATTGCCAGGTTCTTCGTA 60.271 47.619 6.12 0.00 0.00 3.43
1914 3045 2.922740 TTGCCAGGTTCTTCGTAACT 57.077 45.000 0.00 0.00 0.00 2.24
1915 3046 2.450609 TGCCAGGTTCTTCGTAACTC 57.549 50.000 0.00 0.00 0.00 3.01
1916 3047 1.689813 TGCCAGGTTCTTCGTAACTCA 59.310 47.619 0.00 0.00 0.00 3.41
1917 3048 2.301870 TGCCAGGTTCTTCGTAACTCAT 59.698 45.455 0.00 0.00 0.00 2.90
1918 3049 3.244422 TGCCAGGTTCTTCGTAACTCATT 60.244 43.478 0.00 0.00 0.00 2.57
1923 3057 5.346281 CAGGTTCTTCGTAACTCATTCAGAC 59.654 44.000 0.00 0.00 0.00 3.51
1925 3059 5.694910 GGTTCTTCGTAACTCATTCAGACAA 59.305 40.000 0.00 0.00 0.00 3.18
1927 3061 6.085555 TCTTCGTAACTCATTCAGACAACT 57.914 37.500 0.00 0.00 0.00 3.16
1936 3070 7.009179 ACTCATTCAGACAACTTTGAGGATA 57.991 36.000 0.00 0.00 35.93 2.59
1940 3074 7.550551 TCATTCAGACAACTTTGAGGATATGTC 59.449 37.037 0.00 0.00 37.91 3.06
1941 3075 6.358974 TCAGACAACTTTGAGGATATGTCA 57.641 37.500 6.50 0.00 39.60 3.58
1943 3077 5.064452 CAGACAACTTTGAGGATATGTCAGC 59.936 44.000 6.50 0.00 39.60 4.26
1948 3082 7.071196 ACAACTTTGAGGATATGTCAGCCTATA 59.929 37.037 0.00 0.00 45.46 1.31
1980 3120 2.568623 ATTTTGCTGTTCTCGAGGGT 57.431 45.000 13.56 0.00 0.00 4.34
1984 3124 1.374758 GCTGTTCTCGAGGGTGTGG 60.375 63.158 13.56 0.00 0.00 4.17
1987 3127 0.679505 TGTTCTCGAGGGTGTGGAAG 59.320 55.000 13.56 0.00 0.00 3.46
2092 3246 7.952671 ACCGCTCTGATAATTTCTACTTCATA 58.047 34.615 0.00 0.00 0.00 2.15
2126 3280 7.155328 GTGAGTTCTCTTAGATCAAAGACCAA 58.845 38.462 0.00 0.00 32.18 3.67
2179 3333 0.254178 CCCAGTGACCAGCAGCTAAT 59.746 55.000 0.00 0.00 0.00 1.73
2222 3376 3.599704 GCCCATCGCCCATGCTTC 61.600 66.667 0.00 0.00 34.43 3.86
2288 3458 5.886960 ACATCACATGAAACTTCTTAGCC 57.113 39.130 0.00 0.00 0.00 3.93
2332 3504 6.815089 ACAGGATCTAGATTGTAGAGCAAAG 58.185 40.000 6.70 0.79 40.91 2.77
2344 3516 6.109156 TGTAGAGCAAAGACCTGTAAATCA 57.891 37.500 0.00 0.00 0.00 2.57
2356 3528 7.175104 AGACCTGTAAATCATTCCAAGCTTTA 58.825 34.615 0.00 0.00 0.00 1.85
2405 3577 1.846007 ATTTATGTTGGCGGCAGGAA 58.154 45.000 12.87 1.90 0.00 3.36
2500 3672 8.429237 TGATTATTTTGGACCATACCTTGTTT 57.571 30.769 0.00 0.00 0.00 2.83
2526 3698 4.773013 TGAGCTATGTGAATGATTCTGCA 58.227 39.130 6.73 6.16 0.00 4.41
2529 3701 5.434408 AGCTATGTGAATGATTCTGCAGAA 58.566 37.500 30.23 30.23 38.56 3.02
2530 3702 6.062749 AGCTATGTGAATGATTCTGCAGAAT 58.937 36.000 36.15 36.15 46.54 2.40
2555 3727 0.742281 CTGTGCACTCAAGATCCGGG 60.742 60.000 19.41 0.00 0.00 5.73
2704 3894 6.478016 TCTGTTCTGAATTCTATGAGCGATTG 59.522 38.462 7.05 0.00 0.00 2.67
2761 3952 4.042809 TGCTCTTTCCTTGGACTCCATTAA 59.957 41.667 0.00 0.00 31.53 1.40
2819 4010 1.620819 ACAACAGGCTCCTCTACACAG 59.379 52.381 0.00 0.00 0.00 3.66
3004 4196 8.114331 TGACATTCTGAATTTCTGCAGTAAAT 57.886 30.769 14.67 14.59 33.90 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.042559 ACAACTTGCACCCCCAACTG 61.043 55.000 0.00 0.00 0.00 3.16
94 95 7.271511 GTCTGTCAATTCTTCATGGAGTCTAT 58.728 38.462 0.00 0.00 0.00 1.98
110 111 6.560253 AAAGTATGCTTTTCGTCTGTCAAT 57.440 33.333 2.58 0.00 41.78 2.57
250 252 9.913451 AAATGTCACGAACAATTTTAAAACATG 57.087 25.926 1.97 8.22 42.37 3.21
252 254 9.959775 GAAAATGTCACGAACAATTTTAAAACA 57.040 25.926 1.97 0.00 40.31 2.83
451 1556 8.680039 ACATTTTTCATGAACATTGGAAACAT 57.320 26.923 7.89 0.00 42.32 2.71
454 1559 9.605275 TTGTACATTTTTCATGAACATTGGAAA 57.395 25.926 7.89 5.44 0.00 3.13
459 1564 7.206687 ACCGTTGTACATTTTTCATGAACATT 58.793 30.769 7.89 0.00 0.00 2.71
464 1569 5.529430 ACAGACCGTTGTACATTTTTCATGA 59.471 36.000 0.00 0.00 0.00 3.07
490 1595 7.039923 ACAGACCGTTGTATCTCTCTCTAAAAA 60.040 37.037 0.00 0.00 0.00 1.94
491 1596 6.433404 ACAGACCGTTGTATCTCTCTCTAAAA 59.567 38.462 0.00 0.00 0.00 1.52
492 1597 5.944599 ACAGACCGTTGTATCTCTCTCTAAA 59.055 40.000 0.00 0.00 0.00 1.85
493 1598 5.498393 ACAGACCGTTGTATCTCTCTCTAA 58.502 41.667 0.00 0.00 0.00 2.10
494 1599 5.100344 ACAGACCGTTGTATCTCTCTCTA 57.900 43.478 0.00 0.00 0.00 2.43
495 1600 3.958018 ACAGACCGTTGTATCTCTCTCT 58.042 45.455 0.00 0.00 0.00 3.10
496 1601 4.705337 AACAGACCGTTGTATCTCTCTC 57.295 45.455 0.00 0.00 36.12 3.20
641 1752 2.664015 CTACCCTAACGCCTTCTACCT 58.336 52.381 0.00 0.00 0.00 3.08
720 1834 1.229853 AGGTTTGGGGAGATCCGGT 60.230 57.895 0.00 0.00 36.71 5.28
722 1836 1.527370 GGAGGTTTGGGGAGATCCG 59.473 63.158 0.00 0.00 36.71 4.18
723 1837 0.624795 AGGGAGGTTTGGGGAGATCC 60.625 60.000 0.00 0.00 0.00 3.36
724 1838 2.191981 TAGGGAGGTTTGGGGAGATC 57.808 55.000 0.00 0.00 0.00 2.75
725 1839 2.680439 TTAGGGAGGTTTGGGGAGAT 57.320 50.000 0.00 0.00 0.00 2.75
726 1840 2.680439 ATTAGGGAGGTTTGGGGAGA 57.320 50.000 0.00 0.00 0.00 3.71
758 1872 3.812053 AGCCAAGAACAAGATCGATATGC 59.188 43.478 0.00 0.00 0.00 3.14
820 1934 1.356059 TGGGATCCAATTCAACCCGAA 59.644 47.619 15.23 0.00 43.04 4.30
828 1942 1.831106 GTGGGGTTTGGGATCCAATTC 59.169 52.381 15.23 0.86 43.55 2.17
842 1956 1.080538 GGTACCTGAGGAGTGGGGT 59.919 63.158 4.99 0.00 36.02 4.95
860 1974 3.303881 TTATCATCAGAGATTCGCGGG 57.696 47.619 6.13 0.00 0.00 6.13
938 2057 0.036010 AGGGACTCGTTGAATGCTGG 60.036 55.000 0.00 0.00 0.00 4.85
941 2060 1.523758 ACAAGGGACTCGTTGAATGC 58.476 50.000 5.93 0.00 38.49 3.56
954 2076 7.066766 CCTGATAATCAAGAGAAAGAACAAGGG 59.933 40.741 0.00 0.00 0.00 3.95
968 2090 3.134458 GGCGGACTTCCTGATAATCAAG 58.866 50.000 0.00 0.00 0.00 3.02
969 2091 2.483013 CGGCGGACTTCCTGATAATCAA 60.483 50.000 0.00 0.00 0.00 2.57
1065 2187 1.092921 TTGCGGGATTCATACGGTGC 61.093 55.000 0.00 0.00 0.00 5.01
1069 2191 4.027572 ACAAATTTGCGGGATTCATACG 57.972 40.909 18.12 0.00 0.00 3.06
1071 2193 5.866633 GTGAAACAAATTTGCGGGATTCATA 59.133 36.000 18.12 0.00 36.32 2.15
1072 2194 4.690280 GTGAAACAAATTTGCGGGATTCAT 59.310 37.500 18.12 0.00 36.32 2.57
1077 2199 1.069358 GGGTGAAACAAATTTGCGGGA 59.931 47.619 18.12 0.00 39.98 5.14
1080 2202 2.286563 GGTTGGGTGAAACAAATTTGCG 59.713 45.455 18.12 0.00 39.98 4.85
1086 2208 2.104170 GACCTGGTTGGGTGAAACAAA 58.896 47.619 0.00 0.00 40.06 2.83
1089 2211 1.318576 CTGACCTGGTTGGGTGAAAC 58.681 55.000 0.00 0.00 40.06 2.78
1099 2221 2.847234 TGGAACCGCTGACCTGGT 60.847 61.111 0.00 0.00 41.20 4.00
1102 2224 4.379243 CGCTGGAACCGCTGACCT 62.379 66.667 0.00 0.00 0.00 3.85
1119 2247 1.130561 GCATCTGCTAACGGTTGAACC 59.869 52.381 3.76 3.76 38.21 3.62
1134 2265 2.771762 GGGGGCAGAGGAGCATCT 60.772 66.667 0.00 0.00 35.83 2.90
1177 2308 2.391389 CGAGTTCGCCCTTCTTGCC 61.391 63.158 0.00 0.00 0.00 4.52
1192 2323 2.286595 CCATGAAATTCATCCACGCGAG 60.287 50.000 15.93 4.16 34.28 5.03
1193 2324 1.670295 CCATGAAATTCATCCACGCGA 59.330 47.619 15.93 0.00 34.28 5.87
1194 2325 1.861202 GCCATGAAATTCATCCACGCG 60.861 52.381 3.53 3.53 34.28 6.01
1237 2368 0.178975 ATCTGGTCCACGGCCAAAAA 60.179 50.000 2.24 0.00 35.32 1.94
1239 2370 0.251916 CTATCTGGTCCACGGCCAAA 59.748 55.000 2.24 0.00 35.32 3.28
1240 2371 1.622607 CCTATCTGGTCCACGGCCAA 61.623 60.000 2.24 0.00 35.32 4.52
1242 2373 2.822399 CCTATCTGGTCCACGGCC 59.178 66.667 0.00 0.00 0.00 6.13
1265 2396 3.669122 CGAGTCAGTGTCGTAAAAGAAGG 59.331 47.826 0.00 0.00 32.62 3.46
1272 2403 1.944035 ACGCGAGTCAGTGTCGTAA 59.056 52.632 15.93 0.00 44.19 3.18
1318 2449 1.380246 GGTCCATGATGGGCTTGCA 60.380 57.895 16.61 0.00 43.05 4.08
1332 2463 1.227973 GGCAATGGAGATCGGGTCC 60.228 63.158 0.00 0.00 34.31 4.46
1338 2469 0.734889 CACCAACGGCAATGGAGATC 59.265 55.000 12.09 0.00 40.56 2.75
1353 2484 0.538746 TGACGTAGAGGCTGTCACCA 60.539 55.000 0.00 0.00 37.69 4.17
1356 2487 1.745653 CTCATGACGTAGAGGCTGTCA 59.254 52.381 7.72 7.72 45.71 3.58
1365 2496 1.535437 GGGTTACCGCTCATGACGTAG 60.535 57.143 13.90 5.25 0.00 3.51
1391 2522 2.436646 AATGCTTCCCAGGCGACG 60.437 61.111 0.00 0.00 0.00 5.12
1393 2524 2.751436 GCAATGCTTCCCAGGCGA 60.751 61.111 0.00 0.00 0.00 5.54
1394 2525 2.345760 AAGCAATGCTTCCCAGGCG 61.346 57.895 15.60 0.00 46.77 5.52
1405 2536 1.948145 GATGAGAGCCTGGAAGCAATG 59.052 52.381 0.00 0.00 34.23 2.82
1406 2537 1.133853 GGATGAGAGCCTGGAAGCAAT 60.134 52.381 0.00 0.00 34.23 3.56
1407 2538 0.254178 GGATGAGAGCCTGGAAGCAA 59.746 55.000 0.00 0.00 34.23 3.91
1437 2568 1.073025 ATTGGTGTCGCTTGCAGGA 59.927 52.632 0.00 0.00 0.00 3.86
1453 2584 3.117888 AGCGAATACCAGGACCAATCATT 60.118 43.478 0.00 0.00 0.00 2.57
1455 2586 1.837439 AGCGAATACCAGGACCAATCA 59.163 47.619 0.00 0.00 0.00 2.57
1458 2589 1.626321 TGAAGCGAATACCAGGACCAA 59.374 47.619 0.00 0.00 0.00 3.67
1463 2594 1.154205 CGGCTGAAGCGAATACCAGG 61.154 60.000 0.00 0.00 43.26 4.45
1482 2613 1.671379 GTTCACGAAGGGAGGTGGC 60.671 63.158 0.00 0.00 34.93 5.01
1485 2616 4.186136 TCGTTCACGAAGGGAGGT 57.814 55.556 0.00 0.00 46.30 3.85
1494 2625 2.736682 GCGGGGAATGTCGTTCACG 61.737 63.158 13.62 13.62 41.36 4.35
1496 2627 0.672401 GAAGCGGGGAATGTCGTTCA 60.672 55.000 7.10 0.00 38.64 3.18
1497 2628 1.366854 GGAAGCGGGGAATGTCGTTC 61.367 60.000 0.00 0.00 36.04 3.95
1498 2629 1.376812 GGAAGCGGGGAATGTCGTT 60.377 57.895 0.00 0.00 0.00 3.85
1503 2634 1.027357 CTTCATGGAAGCGGGGAATG 58.973 55.000 0.00 0.00 32.78 2.67
1504 2635 0.918983 TCTTCATGGAAGCGGGGAAT 59.081 50.000 1.14 0.00 39.29 3.01
1505 2636 0.918983 ATCTTCATGGAAGCGGGGAA 59.081 50.000 1.14 0.00 39.29 3.97
1506 2637 0.181114 CATCTTCATGGAAGCGGGGA 59.819 55.000 1.14 0.00 39.29 4.81
1507 2638 0.181114 TCATCTTCATGGAAGCGGGG 59.819 55.000 1.14 0.00 39.29 5.73
1508 2639 1.590932 CTCATCTTCATGGAAGCGGG 58.409 55.000 1.14 0.00 39.29 6.13
1509 2640 1.134280 ACCTCATCTTCATGGAAGCGG 60.134 52.381 1.14 2.62 39.29 5.52
1510 2641 2.208431 GACCTCATCTTCATGGAAGCG 58.792 52.381 1.14 0.00 39.29 4.68
1511 2642 3.272574 TGACCTCATCTTCATGGAAGC 57.727 47.619 1.14 0.00 39.29 3.86
1512 2643 5.298777 GGATTTGACCTCATCTTCATGGAAG 59.701 44.000 0.00 0.00 40.65 3.46
1513 2644 5.195940 GGATTTGACCTCATCTTCATGGAA 58.804 41.667 0.00 0.00 0.00 3.53
1514 2645 4.227982 TGGATTTGACCTCATCTTCATGGA 59.772 41.667 0.00 0.00 0.00 3.41
1516 2647 5.191426 ACTGGATTTGACCTCATCTTCATG 58.809 41.667 0.00 0.00 0.00 3.07
1521 2652 3.350833 GCAACTGGATTTGACCTCATCT 58.649 45.455 0.00 0.00 0.00 2.90
1523 2654 2.086869 CGCAACTGGATTTGACCTCAT 58.913 47.619 0.00 0.00 0.00 2.90
1524 2655 1.522668 CGCAACTGGATTTGACCTCA 58.477 50.000 0.00 0.00 0.00 3.86
1526 2657 0.110486 ACCGCAACTGGATTTGACCT 59.890 50.000 0.00 0.00 0.00 3.85
1529 2660 1.234821 GTCACCGCAACTGGATTTGA 58.765 50.000 0.00 0.00 0.00 2.69
1530 2661 0.110238 CGTCACCGCAACTGGATTTG 60.110 55.000 0.00 0.00 0.00 2.32
1531 2662 0.534203 ACGTCACCGCAACTGGATTT 60.534 50.000 0.00 0.00 37.70 2.17
1532 2663 0.534203 AACGTCACCGCAACTGGATT 60.534 50.000 0.00 0.00 37.70 3.01
1539 2670 2.970324 GCTGGAACGTCACCGCAA 60.970 61.111 16.58 0.00 37.70 4.85
1543 2674 4.717313 GGGGGCTGGAACGTCACC 62.717 72.222 5.01 5.01 0.00 4.02
1545 2676 1.306654 ATAGGGGGCTGGAACGTCA 60.307 57.895 0.00 0.00 0.00 4.35
1548 2679 0.254747 TTTCATAGGGGGCTGGAACG 59.745 55.000 0.00 0.00 0.00 3.95
1550 2681 1.142870 CGATTTCATAGGGGGCTGGAA 59.857 52.381 0.00 0.00 0.00 3.53
1551 2682 0.764890 CGATTTCATAGGGGGCTGGA 59.235 55.000 0.00 0.00 0.00 3.86
1555 2686 1.172812 GCACCGATTTCATAGGGGGC 61.173 60.000 0.00 0.00 0.00 5.80
1556 2687 0.537371 GGCACCGATTTCATAGGGGG 60.537 60.000 0.00 0.00 0.00 5.40
1557 2688 0.474184 AGGCACCGATTTCATAGGGG 59.526 55.000 0.00 0.00 0.00 4.79
1562 2693 2.027192 ACAGTGTAGGCACCGATTTCAT 60.027 45.455 0.00 0.00 46.35 2.57
1579 2710 0.179032 TGTGATTCGCCAACCACAGT 60.179 50.000 0.00 0.00 34.96 3.55
1581 2712 0.107643 TCTGTGATTCGCCAACCACA 59.892 50.000 0.00 0.00 37.84 4.17
1589 2720 2.890808 TACCCAGATCTGTGATTCGC 57.109 50.000 21.11 0.00 0.00 4.70
1593 2724 3.645212 CTGTGGATACCCAGATCTGTGAT 59.355 47.826 21.11 10.90 44.55 3.06
1606 2737 1.815421 CGGCACCTGCTGTGGATAC 60.815 63.158 8.66 0.00 45.55 2.24
1615 2746 3.508840 GTATGTGCCGGCACCTGC 61.509 66.667 46.85 38.39 45.63 4.85
1617 2748 2.584608 GAGTATGTGCCGGCACCT 59.415 61.111 46.85 40.69 45.63 4.00
1620 2751 0.249280 CATACGAGTATGTGCCGGCA 60.249 55.000 29.03 29.03 38.42 5.69
1643 2774 1.303799 GCTCCATGCACCACTCACAG 61.304 60.000 0.00 0.00 42.31 3.66
1644 2775 1.302752 GCTCCATGCACCACTCACA 60.303 57.895 0.00 0.00 42.31 3.58
1656 2787 0.995024 AGTTGCCTACCTTGCTCCAT 59.005 50.000 0.00 0.00 0.00 3.41
1665 2796 0.955919 GCAGTGACCAGTTGCCTACC 60.956 60.000 0.00 0.00 31.79 3.18
1666 2797 2.544726 GCAGTGACCAGTTGCCTAC 58.455 57.895 0.00 0.00 31.79 3.18
1678 2809 2.343758 GCCTCTGAACGGCAGTGA 59.656 61.111 10.08 0.00 46.77 3.41
1698 2829 1.676678 GCTCAGGGATGTACTCGGCA 61.677 60.000 0.00 0.00 0.00 5.69
1758 2889 1.016130 CAGTGAGGTCCGATGTGCAC 61.016 60.000 10.75 10.75 0.00 4.57
1782 2913 3.474570 GGCGGCCTCACCTCAGAT 61.475 66.667 12.87 0.00 35.61 2.90
1803 2934 3.429410 CGTCTGTCCACATATTCTGCAGA 60.429 47.826 13.74 13.74 0.00 4.26
1810 2941 2.565391 TGACCACGTCTGTCCACATATT 59.435 45.455 11.19 0.00 33.15 1.28
1813 2944 0.318441 CTGACCACGTCTGTCCACAT 59.682 55.000 11.19 0.00 33.15 3.21
1837 2968 3.766051 GCATCTCTCAGGGTCCAATTTTT 59.234 43.478 0.00 0.00 0.00 1.94
1840 2971 1.213926 GGCATCTCTCAGGGTCCAATT 59.786 52.381 0.00 0.00 0.00 2.32
1853 2984 2.894387 GCACGAGGCTGGCATCTC 60.894 66.667 3.38 7.64 40.25 2.75
1875 3006 3.993535 CAGACTTTGCCAGAGCCC 58.006 61.111 0.00 0.00 38.69 5.19
1884 3015 0.963962 ACCTGGCAATGCAGACTTTG 59.036 50.000 7.79 0.00 34.80 2.77
1885 3016 1.615392 GAACCTGGCAATGCAGACTTT 59.385 47.619 7.79 0.00 0.00 2.66
1894 3025 3.244422 TGAGTTACGAAGAACCTGGCAAT 60.244 43.478 0.00 0.00 0.00 3.56
1908 3039 6.346919 CCTCAAAGTTGTCTGAATGAGTTACG 60.347 42.308 0.00 0.00 32.60 3.18
1909 3040 6.706270 TCCTCAAAGTTGTCTGAATGAGTTAC 59.294 38.462 0.00 0.00 32.60 2.50
1911 3042 5.684704 TCCTCAAAGTTGTCTGAATGAGTT 58.315 37.500 0.00 0.00 32.60 3.01
1914 3045 7.397221 ACATATCCTCAAAGTTGTCTGAATGA 58.603 34.615 0.00 0.00 0.00 2.57
1915 3046 7.335171 TGACATATCCTCAAAGTTGTCTGAATG 59.665 37.037 0.00 0.00 35.63 2.67
1916 3047 7.397221 TGACATATCCTCAAAGTTGTCTGAAT 58.603 34.615 0.00 0.00 35.63 2.57
1917 3048 6.768483 TGACATATCCTCAAAGTTGTCTGAA 58.232 36.000 0.00 0.00 35.63 3.02
1918 3049 6.358974 TGACATATCCTCAAAGTTGTCTGA 57.641 37.500 0.00 0.00 35.63 3.27
1923 3057 4.521146 AGGCTGACATATCCTCAAAGTTG 58.479 43.478 0.00 0.00 0.00 3.16
1925 3059 7.510685 TCTTATAGGCTGACATATCCTCAAAGT 59.489 37.037 0.00 0.00 0.00 2.66
1927 3061 7.855784 TCTTATAGGCTGACATATCCTCAAA 57.144 36.000 0.00 0.00 0.00 2.69
1936 3070 7.667575 TCTCTCTTTTCTTATAGGCTGACAT 57.332 36.000 0.00 0.00 0.00 3.06
1941 3075 8.681806 GCAAAATTCTCTCTTTTCTTATAGGCT 58.318 33.333 0.00 0.00 0.00 4.58
1948 3082 8.005192 AGAACAGCAAAATTCTCTCTTTTCTT 57.995 30.769 0.00 0.00 28.79 2.52
1980 3120 1.679139 CAGCCTTCAACACTTCCACA 58.321 50.000 0.00 0.00 0.00 4.17
1984 3124 0.954452 CACCCAGCCTTCAACACTTC 59.046 55.000 0.00 0.00 0.00 3.01
1987 3127 1.903404 CCCACCCAGCCTTCAACAC 60.903 63.158 0.00 0.00 0.00 3.32
2092 3246 5.211973 TCTAAGAGAACTCACCTGCCATAT 58.788 41.667 4.64 0.00 0.00 1.78
2100 3254 6.103330 GGTCTTTGATCTAAGAGAACTCACC 58.897 44.000 18.19 11.53 34.95 4.02
2126 3280 0.750850 ACAATATACAGGCGAGCCGT 59.249 50.000 8.63 11.82 41.95 5.68
2179 3333 4.320023 TGTAAGTATCGCTTTTCTTGCCA 58.680 39.130 0.00 0.00 38.57 4.92
2235 3389 1.239347 GTGACCAAAGGTGAGCTTCC 58.761 55.000 0.00 0.00 35.25 3.46
2288 3458 4.641396 TGTTTCAGGTGGACATAGACTTG 58.359 43.478 0.00 0.00 0.00 3.16
2315 3487 5.971763 ACAGGTCTTTGCTCTACAATCTAG 58.028 41.667 0.00 0.00 38.31 2.43
2327 3499 5.643379 TGGAATGATTTACAGGTCTTTGC 57.357 39.130 0.00 0.00 0.00 3.68
2332 3504 5.904362 AAGCTTGGAATGATTTACAGGTC 57.096 39.130 0.00 0.00 0.00 3.85
2344 3516 6.311735 TCCCTACAGTTTTAAAGCTTGGAAT 58.688 36.000 0.00 0.00 0.00 3.01
2356 3528 4.640771 TCTTGATGCTCCCTACAGTTTT 57.359 40.909 0.00 0.00 0.00 2.43
2500 3672 5.587443 CAGAATCATTCACATAGCTCAACCA 59.413 40.000 0.00 0.00 0.00 3.67
2526 3698 4.222366 TCTTGAGTGCACAGAGATCATTCT 59.778 41.667 21.04 0.00 33.88 2.40
2529 3701 4.443175 GGATCTTGAGTGCACAGAGATCAT 60.443 45.833 33.63 17.33 42.72 2.45
2530 3702 3.118847 GGATCTTGAGTGCACAGAGATCA 60.119 47.826 33.63 22.55 42.72 2.92
2555 3727 1.224592 ACAGGATGGGATTGGCGAC 59.775 57.895 0.00 0.00 43.62 5.19
2704 3894 6.174720 TGAATGGGGAGATACATGTCTAAC 57.825 41.667 0.00 0.00 0.00 2.34
2761 3952 1.417517 TGTGAGACACATGTGCTTCCT 59.582 47.619 25.68 16.49 39.62 3.36
2819 4010 2.289565 GGATCAAACCCGAAGATCACC 58.710 52.381 0.00 0.00 39.85 4.02
3004 4196 0.473755 TGACCCTGAAAAGCAGCTGA 59.526 50.000 20.43 0.00 43.50 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.