Multiple sequence alignment - TraesCS1B01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G301800 chr1B 100.000 5096 0 0 1 5096 522361806 522366901 0.000000e+00 9411.0
1 TraesCS1B01G301800 chr1B 82.056 1527 162 60 925 2428 522626379 522627816 0.000000e+00 1199.0
2 TraesCS1B01G301800 chr1B 86.824 296 31 6 3597 3887 522628991 522629283 1.770000e-84 324.0
3 TraesCS1B01G301800 chr1B 75.193 778 136 36 1066 1819 522840979 522840235 1.070000e-81 315.0
4 TraesCS1B01G301800 chr1B 73.291 951 151 66 933 1816 523338158 523339072 2.350000e-63 254.0
5 TraesCS1B01G301800 chr1B 73.250 957 147 71 933 1816 523207874 523208794 1.100000e-61 248.0
6 TraesCS1B01G301800 chr1B 75.155 322 62 12 2547 2863 522741100 522741408 8.900000e-28 135.0
7 TraesCS1B01G301800 chr1B 94.872 39 2 0 4616 4654 522366383 522366421 1.530000e-05 62.1
8 TraesCS1B01G301800 chr1D 91.943 2296 118 26 790 3058 388990862 388993117 0.000000e+00 3153.0
9 TraesCS1B01G301800 chr1D 83.759 1607 179 41 981 2566 389213018 389214563 0.000000e+00 1447.0
10 TraesCS1B01G301800 chr1D 82.474 1649 195 53 1416 3022 389555636 389554040 0.000000e+00 1358.0
11 TraesCS1B01G301800 chr1D 83.110 1492 177 42 981 2454 389603094 389601660 0.000000e+00 1290.0
12 TraesCS1B01G301800 chr1D 92.387 683 30 15 2 672 388990178 388990850 0.000000e+00 953.0
13 TraesCS1B01G301800 chr1D 90.287 628 36 11 3595 4215 388993429 388994038 0.000000e+00 798.0
14 TraesCS1B01G301800 chr1D 94.389 303 16 1 3074 3376 388993103 388993404 9.990000e-127 464.0
15 TraesCS1B01G301800 chr1D 91.156 294 25 1 3595 3887 389215850 389216143 1.030000e-106 398.0
16 TraesCS1B01G301800 chr1D 78.076 634 79 29 2440 3058 389600371 389599783 3.780000e-91 346.0
17 TraesCS1B01G301800 chr1D 73.810 840 144 51 1020 1816 390409579 390408773 3.910000e-66 263.0
18 TraesCS1B01G301800 chr1D 92.308 182 13 1 3433 3614 199867003 199866823 1.820000e-64 257.0
19 TraesCS1B01G301800 chr1D 78.222 450 51 22 2561 3001 389214641 389215052 1.420000e-60 244.0
20 TraesCS1B01G301800 chr1D 90.385 156 12 3 3998 4151 389547035 389546881 8.650000e-48 202.0
21 TraesCS1B01G301800 chr1D 73.747 499 88 29 2565 3049 389494112 389493643 6.830000e-34 156.0
22 TraesCS1B01G301800 chr1D 89.091 110 6 1 1442 1545 390402308 390402199 1.150000e-26 132.0
23 TraesCS1B01G301800 chr1D 87.838 74 7 2 3203 3275 389553844 389553772 9.090000e-13 86.1
24 TraesCS1B01G301800 chr1D 100.000 34 0 0 979 1012 389556254 389556221 4.260000e-06 63.9
25 TraesCS1B01G301800 chr1D 94.737 38 2 0 927 964 390727751 390727788 5.510000e-05 60.2
26 TraesCS1B01G301800 chr1A 93.312 2138 102 16 918 3028 488071380 488073503 0.000000e+00 3118.0
27 TraesCS1B01G301800 chr1A 82.127 2031 241 51 1058 3058 488111937 488109999 0.000000e+00 1628.0
28 TraesCS1B01G301800 chr1A 93.294 686 29 13 2 672 488070492 488071175 0.000000e+00 996.0
29 TraesCS1B01G301800 chr1A 90.234 471 20 12 3642 4111 488073859 488074304 4.390000e-165 592.0
30 TraesCS1B01G301800 chr1A 94.983 299 13 2 3078 3375 488073505 488073802 7.730000e-128 468.0
31 TraesCS1B01G301800 chr1A 90.268 298 25 3 3595 3890 488109315 488109020 2.230000e-103 387.0
32 TraesCS1B01G301800 chr1A 94.857 175 7 2 3426 3598 480758739 480758913 6.500000e-69 272.0
33 TraesCS1B01G301800 chr1A 74.165 778 130 35 1079 1822 488103808 488103068 1.820000e-64 257.0
34 TraesCS1B01G301800 chr1A 72.865 855 141 56 1028 1816 488235778 488236607 5.170000e-50 209.0
35 TraesCS1B01G301800 chr5A 86.891 801 79 15 4316 5096 615412110 615412904 0.000000e+00 874.0
36 TraesCS1B01G301800 chr5A 91.398 186 16 0 3427 3612 526657784 526657969 6.550000e-64 255.0
37 TraesCS1B01G301800 chr7D 86.642 816 70 17 4309 5096 462261482 462260678 0.000000e+00 867.0
38 TraesCS1B01G301800 chr7D 86.741 807 69 18 4316 5096 616909701 616910495 0.000000e+00 863.0
39 TraesCS1B01G301800 chr7D 86.493 807 72 16 4316 5096 506148425 506147630 0.000000e+00 852.0
40 TraesCS1B01G301800 chr5D 86.493 807 75 14 4316 5096 4810241 4809443 0.000000e+00 856.0
41 TraesCS1B01G301800 chr5D 96.970 165 5 0 3434 3598 550299364 550299200 1.400000e-70 278.0
42 TraesCS1B01G301800 chr4B 86.453 812 71 19 4310 5094 17381221 17382020 0.000000e+00 854.0
43 TraesCS1B01G301800 chr2D 86.476 806 73 15 4316 5096 620814457 620815251 0.000000e+00 852.0
44 TraesCS1B01G301800 chr2D 86.032 809 74 15 4316 5096 586571326 586570529 0.000000e+00 832.0
45 TraesCS1B01G301800 chr2D 94.737 171 8 1 3434 3604 593801596 593801765 1.090000e-66 265.0
46 TraesCS1B01G301800 chrUn 86.369 807 73 16 4316 5096 27469050 27468255 0.000000e+00 846.0
47 TraesCS1B01G301800 chr4D 86.156 809 73 18 4315 5096 49894170 49894966 0.000000e+00 837.0
48 TraesCS1B01G301800 chr4D 93.258 178 11 1 3432 3609 423909748 423909572 1.410000e-65 261.0
49 TraesCS1B01G301800 chr5B 85.995 814 73 19 4313 5096 151598234 151597432 0.000000e+00 833.0
50 TraesCS1B01G301800 chr5B 95.930 172 6 1 3434 3605 560393711 560393881 1.400000e-70 278.0
51 TraesCS1B01G301800 chr3D 85.608 806 81 16 4316 5096 434269740 434268945 0.000000e+00 813.0
52 TraesCS1B01G301800 chr3D 95.294 170 7 1 3434 3603 550509432 550509600 8.410000e-68 268.0
53 TraesCS1B01G301800 chr4A 87.554 699 65 12 4402 5096 566924420 566925100 0.000000e+00 789.0
54 TraesCS1B01G301800 chr6D 96.364 165 6 0 3434 3598 336841790 336841626 6.500000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G301800 chr1B 522361806 522366901 5095 False 4736.550000 9411 97.43600 1 5096 2 chr1B.!!$F4 5095
1 TraesCS1B01G301800 chr1B 522626379 522629283 2904 False 761.500000 1199 84.44000 925 3887 2 chr1B.!!$F5 2962
2 TraesCS1B01G301800 chr1B 522840235 522840979 744 True 315.000000 315 75.19300 1066 1819 1 chr1B.!!$R1 753
3 TraesCS1B01G301800 chr1B 523338158 523339072 914 False 254.000000 254 73.29100 933 1816 1 chr1B.!!$F3 883
4 TraesCS1B01G301800 chr1B 523207874 523208794 920 False 248.000000 248 73.25000 933 1816 1 chr1B.!!$F2 883
5 TraesCS1B01G301800 chr1D 388990178 388994038 3860 False 1342.000000 3153 92.25150 2 4215 4 chr1D.!!$F2 4213
6 TraesCS1B01G301800 chr1D 389599783 389603094 3311 True 818.000000 1290 80.59300 981 3058 2 chr1D.!!$R7 2077
7 TraesCS1B01G301800 chr1D 389213018 389216143 3125 False 696.333333 1447 84.37900 981 3887 3 chr1D.!!$F3 2906
8 TraesCS1B01G301800 chr1D 389553772 389556254 2482 True 502.666667 1358 90.10400 979 3275 3 chr1D.!!$R6 2296
9 TraesCS1B01G301800 chr1D 390408773 390409579 806 True 263.000000 263 73.81000 1020 1816 1 chr1D.!!$R5 796
10 TraesCS1B01G301800 chr1A 488070492 488074304 3812 False 1293.500000 3118 92.95575 2 4111 4 chr1A.!!$F3 4109
11 TraesCS1B01G301800 chr1A 488109020 488111937 2917 True 1007.500000 1628 86.19750 1058 3890 2 chr1A.!!$R2 2832
12 TraesCS1B01G301800 chr1A 488103068 488103808 740 True 257.000000 257 74.16500 1079 1822 1 chr1A.!!$R1 743
13 TraesCS1B01G301800 chr1A 488235778 488236607 829 False 209.000000 209 72.86500 1028 1816 1 chr1A.!!$F2 788
14 TraesCS1B01G301800 chr5A 615412110 615412904 794 False 874.000000 874 86.89100 4316 5096 1 chr5A.!!$F2 780
15 TraesCS1B01G301800 chr7D 462260678 462261482 804 True 867.000000 867 86.64200 4309 5096 1 chr7D.!!$R1 787
16 TraesCS1B01G301800 chr7D 616909701 616910495 794 False 863.000000 863 86.74100 4316 5096 1 chr7D.!!$F1 780
17 TraesCS1B01G301800 chr7D 506147630 506148425 795 True 852.000000 852 86.49300 4316 5096 1 chr7D.!!$R2 780
18 TraesCS1B01G301800 chr5D 4809443 4810241 798 True 856.000000 856 86.49300 4316 5096 1 chr5D.!!$R1 780
19 TraesCS1B01G301800 chr4B 17381221 17382020 799 False 854.000000 854 86.45300 4310 5094 1 chr4B.!!$F1 784
20 TraesCS1B01G301800 chr2D 620814457 620815251 794 False 852.000000 852 86.47600 4316 5096 1 chr2D.!!$F2 780
21 TraesCS1B01G301800 chr2D 586570529 586571326 797 True 832.000000 832 86.03200 4316 5096 1 chr2D.!!$R1 780
22 TraesCS1B01G301800 chrUn 27468255 27469050 795 True 846.000000 846 86.36900 4316 5096 1 chrUn.!!$R1 780
23 TraesCS1B01G301800 chr4D 49894170 49894966 796 False 837.000000 837 86.15600 4315 5096 1 chr4D.!!$F1 781
24 TraesCS1B01G301800 chr5B 151597432 151598234 802 True 833.000000 833 85.99500 4313 5096 1 chr5B.!!$R1 783
25 TraesCS1B01G301800 chr3D 434268945 434269740 795 True 813.000000 813 85.60800 4316 5096 1 chr3D.!!$R1 780
26 TraesCS1B01G301800 chr4A 566924420 566925100 680 False 789.000000 789 87.55400 4402 5096 1 chr4A.!!$F1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 850 0.101939 GGCGGGAGTAGGAGTTAACG 59.898 60.0 0.00 0.0 0.00 3.18 F
1049 1182 0.105778 CCCTCTTCGCCTCCAGATTC 59.894 60.0 0.00 0.0 0.00 2.52 F
1050 1183 0.105778 CCTCTTCGCCTCCAGATTCC 59.894 60.0 0.00 0.0 0.00 3.01 F
1786 2305 0.179100 CTGTCGACCCATTCAGCGAT 60.179 55.0 14.12 0.0 35.08 4.58 F
3639 6270 0.788391 CGAAGTAACCTTGCCGTGTC 59.212 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2787 2.836479 TGAATCAAGCATGCATGTCG 57.164 45.000 26.79 15.61 0.00 4.35 R
2889 5061 1.291877 AAGTTAGCTGGCGTGCTTCG 61.292 55.000 9.95 0.00 43.74 3.79 R
3032 5217 2.159014 ACTCCTGCAAGTAACACGTTGA 60.159 45.455 0.00 0.00 0.00 3.18 R
3772 6414 0.798776 CTCAGTTGTCGGTCCATTGC 59.201 55.000 0.00 0.00 0.00 3.56 R
4576 7229 0.619255 TAGGGATTTGGAGGACGGCA 60.619 55.000 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.959507 GTCACCCTTTTGCTTTGTGT 57.040 45.000 0.00 0.00 0.00 3.72
20 21 3.245518 GTCACCCTTTTGCTTTGTGTT 57.754 42.857 0.00 0.00 0.00 3.32
21 22 4.379339 GTCACCCTTTTGCTTTGTGTTA 57.621 40.909 0.00 0.00 0.00 2.41
23 24 4.982295 GTCACCCTTTTGCTTTGTGTTATC 59.018 41.667 0.00 0.00 0.00 1.75
30 39 6.088085 CCTTTTGCTTTGTGTTATCGATGTTC 59.912 38.462 8.54 0.00 0.00 3.18
32 41 5.940192 TGCTTTGTGTTATCGATGTTCTT 57.060 34.783 8.54 0.00 0.00 2.52
36 45 7.378461 TGCTTTGTGTTATCGATGTTCTTTTTC 59.622 33.333 8.54 0.00 0.00 2.29
37 46 7.591426 GCTTTGTGTTATCGATGTTCTTTTTCT 59.409 33.333 8.54 0.00 0.00 2.52
52 61 8.347771 TGTTCTTTTTCTCATGAGATTCTGTTG 58.652 33.333 25.64 12.25 37.29 3.33
79 88 5.755409 TCCTAGAAAAACTGCTACATGGA 57.245 39.130 0.00 0.00 0.00 3.41
106 116 3.058224 GCTTGCTTTACCGACATGACTTT 60.058 43.478 0.00 0.00 0.00 2.66
121 131 5.291128 ACATGACTTTAGCAGTAATACACGC 59.709 40.000 0.00 0.00 35.01 5.34
125 135 7.207383 TGACTTTAGCAGTAATACACGCATAT 58.793 34.615 7.42 0.00 35.01 1.78
293 304 5.298026 TCTTGTCTTAGTCGATGATCTCAGG 59.702 44.000 0.00 0.00 0.00 3.86
305 316 5.799435 CGATGATCTCAGGAAGAATATCGTG 59.201 44.000 12.34 0.00 42.67 4.35
311 322 0.861837 GGAAGAATATCGTGCGCAGG 59.138 55.000 23.52 23.52 0.00 4.85
312 323 1.538204 GGAAGAATATCGTGCGCAGGA 60.538 52.381 32.16 32.16 0.00 3.86
322 333 0.304705 GTGCGCAGGACCGATTTATG 59.695 55.000 12.22 0.00 45.47 1.90
439 451 3.570550 GTGTGTGGTTTGTAAATGCCCTA 59.429 43.478 0.00 0.00 0.00 3.53
478 490 2.636768 CAGTGACTGACAGTGCGATA 57.363 50.000 14.14 0.00 41.99 2.92
479 491 2.946564 CAGTGACTGACAGTGCGATAA 58.053 47.619 14.14 0.00 41.99 1.75
560 576 3.409026 AGGTCTGAAAATCTTCGCACT 57.591 42.857 0.00 0.00 33.94 4.40
607 626 9.936759 TTTTTGGAGTAAATTCTTCTTGTTTGT 57.063 25.926 0.00 0.00 0.00 2.83
618 637 6.024552 TCTTCTTGTTTGTGCTTGTTTTCT 57.975 33.333 0.00 0.00 0.00 2.52
619 638 6.092748 TCTTCTTGTTTGTGCTTGTTTTCTC 58.907 36.000 0.00 0.00 0.00 2.87
672 756 2.675423 TGCCGCTCGGACTACTGT 60.675 61.111 13.11 0.00 37.50 3.55
694 778 3.931285 CGATTCATCGCAGAATTGACA 57.069 42.857 9.89 0.00 43.58 3.58
695 779 4.463515 CGATTCATCGCAGAATTGACAT 57.536 40.909 9.89 0.00 43.58 3.06
696 780 4.840911 CGATTCATCGCAGAATTGACATT 58.159 39.130 9.89 0.00 43.58 2.71
697 781 5.268544 CGATTCATCGCAGAATTGACATTT 58.731 37.500 9.89 0.00 43.58 2.32
698 782 6.421405 CGATTCATCGCAGAATTGACATTTA 58.579 36.000 9.89 0.00 43.58 1.40
699 783 6.572621 CGATTCATCGCAGAATTGACATTTAG 59.427 38.462 9.89 0.00 43.58 1.85
700 784 6.983474 TTCATCGCAGAATTGACATTTAGA 57.017 33.333 0.00 0.00 43.58 2.10
701 785 6.349973 TCATCGCAGAATTGACATTTAGAC 57.650 37.500 0.00 0.00 43.58 2.59
702 786 4.840401 TCGCAGAATTGACATTTAGACG 57.160 40.909 0.00 0.00 0.00 4.18
703 787 4.490743 TCGCAGAATTGACATTTAGACGA 58.509 39.130 0.00 0.00 0.00 4.20
704 788 4.926832 TCGCAGAATTGACATTTAGACGAA 59.073 37.500 0.00 0.00 0.00 3.85
705 789 5.580691 TCGCAGAATTGACATTTAGACGAAT 59.419 36.000 0.00 0.00 0.00 3.34
706 790 5.674148 CGCAGAATTGACATTTAGACGAATG 59.326 40.000 0.00 0.00 41.64 2.67
714 798 5.779806 ACATTTAGACGAATGTGTACAGC 57.220 39.130 0.00 0.00 45.75 4.40
715 799 4.630069 ACATTTAGACGAATGTGTACAGCC 59.370 41.667 0.00 0.00 45.75 4.85
716 800 2.953466 TAGACGAATGTGTACAGCCC 57.047 50.000 0.00 0.00 0.00 5.19
717 801 0.973632 AGACGAATGTGTACAGCCCA 59.026 50.000 0.00 0.00 0.00 5.36
718 802 1.555075 AGACGAATGTGTACAGCCCAT 59.445 47.619 0.00 0.00 0.00 4.00
719 803 1.665679 GACGAATGTGTACAGCCCATG 59.334 52.381 0.00 0.00 0.00 3.66
720 804 1.016627 CGAATGTGTACAGCCCATGG 58.983 55.000 4.14 4.14 0.00 3.66
721 805 1.392589 GAATGTGTACAGCCCATGGG 58.607 55.000 27.87 27.87 38.57 4.00
733 817 2.514458 CCCATGGGCTACTTTGAACT 57.486 50.000 20.41 0.00 0.00 3.01
734 818 2.369394 CCCATGGGCTACTTTGAACTC 58.631 52.381 20.41 0.00 0.00 3.01
735 819 2.009774 CCATGGGCTACTTTGAACTCG 58.990 52.381 2.85 0.00 0.00 4.18
736 820 1.398390 CATGGGCTACTTTGAACTCGC 59.602 52.381 0.00 0.00 0.00 5.03
737 821 0.394938 TGGGCTACTTTGAACTCGCA 59.605 50.000 0.00 0.00 0.00 5.10
738 822 1.079503 GGGCTACTTTGAACTCGCAG 58.920 55.000 0.00 0.00 0.00 5.18
739 823 1.337823 GGGCTACTTTGAACTCGCAGA 60.338 52.381 0.00 0.00 0.00 4.26
751 835 2.762360 TCGCAGAGTATTTTGGCGG 58.238 52.632 0.00 0.00 46.95 6.13
752 836 0.742990 TCGCAGAGTATTTTGGCGGG 60.743 55.000 0.00 0.00 46.95 6.13
753 837 0.742990 CGCAGAGTATTTTGGCGGGA 60.743 55.000 0.00 0.00 43.63 5.14
754 838 1.017387 GCAGAGTATTTTGGCGGGAG 58.983 55.000 0.00 0.00 0.00 4.30
755 839 1.679032 GCAGAGTATTTTGGCGGGAGT 60.679 52.381 0.00 0.00 0.00 3.85
756 840 2.419574 GCAGAGTATTTTGGCGGGAGTA 60.420 50.000 0.00 0.00 0.00 2.59
757 841 3.458189 CAGAGTATTTTGGCGGGAGTAG 58.542 50.000 0.00 0.00 0.00 2.57
758 842 2.434702 AGAGTATTTTGGCGGGAGTAGG 59.565 50.000 0.00 0.00 0.00 3.18
759 843 2.433239 GAGTATTTTGGCGGGAGTAGGA 59.567 50.000 0.00 0.00 0.00 2.94
760 844 2.434702 AGTATTTTGGCGGGAGTAGGAG 59.565 50.000 0.00 0.00 0.00 3.69
761 845 1.286248 ATTTTGGCGGGAGTAGGAGT 58.714 50.000 0.00 0.00 0.00 3.85
762 846 1.061546 TTTTGGCGGGAGTAGGAGTT 58.938 50.000 0.00 0.00 0.00 3.01
763 847 1.941377 TTTGGCGGGAGTAGGAGTTA 58.059 50.000 0.00 0.00 0.00 2.24
764 848 1.941377 TTGGCGGGAGTAGGAGTTAA 58.059 50.000 0.00 0.00 0.00 2.01
765 849 1.188863 TGGCGGGAGTAGGAGTTAAC 58.811 55.000 0.00 0.00 0.00 2.01
766 850 0.101939 GGCGGGAGTAGGAGTTAACG 59.898 60.000 0.00 0.00 0.00 3.18
767 851 1.098050 GCGGGAGTAGGAGTTAACGA 58.902 55.000 0.00 0.00 0.00 3.85
768 852 1.474077 GCGGGAGTAGGAGTTAACGAA 59.526 52.381 0.00 0.00 0.00 3.85
769 853 2.100418 GCGGGAGTAGGAGTTAACGAAT 59.900 50.000 0.00 0.00 0.00 3.34
770 854 3.429960 GCGGGAGTAGGAGTTAACGAATT 60.430 47.826 0.00 0.00 0.00 2.17
771 855 4.752146 CGGGAGTAGGAGTTAACGAATTT 58.248 43.478 0.00 0.00 0.00 1.82
772 856 5.173664 CGGGAGTAGGAGTTAACGAATTTT 58.826 41.667 0.00 0.00 0.00 1.82
773 857 5.640783 CGGGAGTAGGAGTTAACGAATTTTT 59.359 40.000 0.00 0.00 0.00 1.94
774 858 6.401796 CGGGAGTAGGAGTTAACGAATTTTTG 60.402 42.308 0.00 0.00 0.00 2.44
775 859 6.128090 GGGAGTAGGAGTTAACGAATTTTTGG 60.128 42.308 0.00 0.00 0.00 3.28
776 860 6.652062 GGAGTAGGAGTTAACGAATTTTTGGA 59.348 38.462 0.00 0.00 0.00 3.53
777 861 7.360691 GGAGTAGGAGTTAACGAATTTTTGGAC 60.361 40.741 0.00 0.00 0.00 4.02
778 862 7.222161 AGTAGGAGTTAACGAATTTTTGGACT 58.778 34.615 0.00 0.00 0.00 3.85
779 863 6.555812 AGGAGTTAACGAATTTTTGGACTC 57.444 37.500 0.00 0.00 33.37 3.36
780 864 6.296803 AGGAGTTAACGAATTTTTGGACTCT 58.703 36.000 0.00 0.00 34.30 3.24
781 865 6.204882 AGGAGTTAACGAATTTTTGGACTCTG 59.795 38.462 0.00 0.00 34.30 3.35
782 866 6.313744 AGTTAACGAATTTTTGGACTCTGG 57.686 37.500 0.00 0.00 0.00 3.86
783 867 6.059484 AGTTAACGAATTTTTGGACTCTGGA 58.941 36.000 0.00 0.00 0.00 3.86
784 868 6.544564 AGTTAACGAATTTTTGGACTCTGGAA 59.455 34.615 0.00 0.00 0.00 3.53
785 869 5.845391 AACGAATTTTTGGACTCTGGAAA 57.155 34.783 0.00 0.00 0.00 3.13
786 870 5.845391 ACGAATTTTTGGACTCTGGAAAA 57.155 34.783 0.00 0.00 0.00 2.29
787 871 6.215495 ACGAATTTTTGGACTCTGGAAAAA 57.785 33.333 0.00 0.00 34.13 1.94
825 909 7.860872 ACGTGAGTTAATGAATTTTTGGACTTC 59.139 33.333 0.00 0.00 46.40 3.01
879 990 1.068250 GCGAGACCATGGGCTAGAC 59.932 63.158 30.19 17.44 0.00 2.59
880 991 1.676678 GCGAGACCATGGGCTAGACA 61.677 60.000 30.19 0.00 0.00 3.41
895 1006 3.377732 CTAGACAGCTAGACGGTACCCG 61.378 59.091 6.25 4.18 45.71 5.28
904 1015 2.660802 CGGTACCCGCTCCTTTGT 59.339 61.111 6.25 0.00 41.17 2.83
905 1016 1.740296 CGGTACCCGCTCCTTTGTG 60.740 63.158 6.25 0.00 41.17 3.33
906 1017 2.038837 GGTACCCGCTCCTTTGTGC 61.039 63.158 0.00 0.00 0.00 4.57
907 1018 1.302192 GTACCCGCTCCTTTGTGCA 60.302 57.895 0.00 0.00 0.00 4.57
908 1019 1.302192 TACCCGCTCCTTTGTGCAC 60.302 57.895 10.75 10.75 0.00 4.57
909 1020 2.741486 TACCCGCTCCTTTGTGCACC 62.741 60.000 15.69 0.00 0.00 5.01
910 1021 2.594303 CCGCTCCTTTGTGCACCA 60.594 61.111 15.69 0.00 0.00 4.17
911 1022 2.192861 CCGCTCCTTTGTGCACCAA 61.193 57.895 15.69 9.00 0.00 3.67
912 1023 1.732917 CGCTCCTTTGTGCACCAAA 59.267 52.632 15.69 13.38 40.71 3.28
913 1024 0.594796 CGCTCCTTTGTGCACCAAAC 60.595 55.000 15.69 2.88 38.12 2.93
914 1025 0.249447 GCTCCTTTGTGCACCAAACC 60.249 55.000 15.69 0.00 38.12 3.27
915 1026 0.389025 CTCCTTTGTGCACCAAACCC 59.611 55.000 15.69 0.00 38.12 4.11
916 1027 0.324738 TCCTTTGTGCACCAAACCCA 60.325 50.000 15.69 0.00 38.12 4.51
917 1028 0.758123 CCTTTGTGCACCAAACCCAT 59.242 50.000 15.69 0.00 38.12 4.00
918 1029 1.540797 CCTTTGTGCACCAAACCCATG 60.541 52.381 15.69 3.30 38.12 3.66
919 1030 0.467384 TTTGTGCACCAAACCCATGG 59.533 50.000 15.69 4.14 46.38 3.66
964 1087 2.582493 CCATGTGCACCAAACCCCC 61.582 63.158 15.69 0.00 0.00 5.40
973 1096 1.002242 ACCAAACCCCCTCTTTCCCA 61.002 55.000 0.00 0.00 0.00 4.37
1045 1178 4.168291 GCCCCTCTTCGCCTCCAG 62.168 72.222 0.00 0.00 0.00 3.86
1046 1179 2.364317 CCCCTCTTCGCCTCCAGA 60.364 66.667 0.00 0.00 0.00 3.86
1047 1180 1.764054 CCCCTCTTCGCCTCCAGAT 60.764 63.158 0.00 0.00 0.00 2.90
1048 1181 1.341156 CCCCTCTTCGCCTCCAGATT 61.341 60.000 0.00 0.00 0.00 2.40
1049 1182 0.105778 CCCTCTTCGCCTCCAGATTC 59.894 60.000 0.00 0.00 0.00 2.52
1050 1183 0.105778 CCTCTTCGCCTCCAGATTCC 59.894 60.000 0.00 0.00 0.00 3.01
1051 1184 0.826715 CTCTTCGCCTCCAGATTCCA 59.173 55.000 0.00 0.00 0.00 3.53
1545 2040 2.225791 CTGCTCACCCAATCCGACGA 62.226 60.000 0.00 0.00 0.00 4.20
1786 2305 0.179100 CTGTCGACCCATTCAGCGAT 60.179 55.000 14.12 0.00 35.08 4.58
2137 2660 1.027815 ATAAGGGGGAGACTGGGAGT 58.972 55.000 0.00 0.00 0.00 3.85
2161 2684 2.783135 TCTTTTCCAGACAGCATCACC 58.217 47.619 0.00 0.00 0.00 4.02
2276 2811 5.079689 ACATGCATGCTTGATTCATTTGA 57.920 34.783 33.07 4.32 0.00 2.69
2282 2817 9.990360 ATGCATGCTTGATTCATTTGAATATTA 57.010 25.926 20.33 0.00 44.14 0.98
2302 2837 9.620259 AATATTAAAGCTCTGAAGTTTCCTAGG 57.380 33.333 0.82 0.82 0.00 3.02
2327 2863 6.073819 GCTTTAATTTTAGGGTGCACAAGTTG 60.074 38.462 20.43 0.00 0.00 3.16
2458 4319 7.665559 GTGATTGGGTGGCTGATATCTTAAATA 59.334 37.037 3.98 0.00 0.00 1.40
2498 4359 7.817418 AATTGCATATAGACCCATACGTTTT 57.183 32.000 0.00 0.00 0.00 2.43
2525 4386 1.396653 AACTGGCCATCATTAGCAGC 58.603 50.000 5.51 0.00 0.00 5.25
3030 5215 3.935203 CTGCATATTTCCTATACTGCCCG 59.065 47.826 0.00 0.00 0.00 6.13
3031 5216 3.326588 TGCATATTTCCTATACTGCCCGT 59.673 43.478 0.00 0.00 0.00 5.28
3032 5217 4.202419 TGCATATTTCCTATACTGCCCGTT 60.202 41.667 0.00 0.00 0.00 4.44
3036 5221 2.973694 TCCTATACTGCCCGTTCAAC 57.026 50.000 0.00 0.00 0.00 3.18
3047 5232 1.333435 CCCGTTCAACGTGTTACTTGC 60.333 52.381 9.52 0.00 40.58 4.01
3048 5233 1.328069 CCGTTCAACGTGTTACTTGCA 59.672 47.619 9.52 0.00 40.58 4.08
3049 5234 2.598907 CCGTTCAACGTGTTACTTGCAG 60.599 50.000 9.52 0.00 40.58 4.41
3050 5235 2.598907 CGTTCAACGTGTTACTTGCAGG 60.599 50.000 0.39 0.00 36.74 4.85
3051 5236 2.605837 TCAACGTGTTACTTGCAGGA 57.394 45.000 1.40 0.00 0.00 3.86
3052 5237 2.479837 TCAACGTGTTACTTGCAGGAG 58.520 47.619 1.40 0.00 0.00 3.69
3053 5238 2.159014 TCAACGTGTTACTTGCAGGAGT 60.159 45.455 1.40 0.00 0.00 3.85
3054 5239 3.068448 TCAACGTGTTACTTGCAGGAGTA 59.932 43.478 1.40 0.00 0.00 2.59
3055 5240 3.738830 ACGTGTTACTTGCAGGAGTAA 57.261 42.857 1.40 4.75 39.21 2.24
3056 5241 3.650139 ACGTGTTACTTGCAGGAGTAAG 58.350 45.455 10.58 3.68 41.41 2.34
3058 5243 4.056050 CGTGTTACTTGCAGGAGTAAGTT 58.944 43.478 10.58 0.00 46.60 2.66
3059 5244 4.510340 CGTGTTACTTGCAGGAGTAAGTTT 59.490 41.667 10.58 0.00 46.60 2.66
3060 5245 5.007332 CGTGTTACTTGCAGGAGTAAGTTTT 59.993 40.000 10.58 0.00 46.60 2.43
3061 5246 6.457799 CGTGTTACTTGCAGGAGTAAGTTTTT 60.458 38.462 10.58 0.00 46.60 1.94
3259 5839 2.461695 ACTACTCTACTGCCATGCTGT 58.538 47.619 4.09 4.09 42.86 4.40
3273 5853 4.130118 CCATGCTGTTCTGACTTATACCC 58.870 47.826 0.00 0.00 0.00 3.69
3361 5988 7.441836 TCAGCTTTATTCTTTCACTAGTCACA 58.558 34.615 0.00 0.00 0.00 3.58
3362 5989 7.931407 TCAGCTTTATTCTTTCACTAGTCACAA 59.069 33.333 0.00 0.00 0.00 3.33
3363 5990 8.559536 CAGCTTTATTCTTTCACTAGTCACAAA 58.440 33.333 0.00 0.00 0.00 2.83
3364 5991 9.289782 AGCTTTATTCTTTCACTAGTCACAAAT 57.710 29.630 0.00 0.00 0.00 2.32
3365 5992 9.548208 GCTTTATTCTTTCACTAGTCACAAATC 57.452 33.333 0.00 0.00 0.00 2.17
3367 5994 9.793259 TTTATTCTTTCACTAGTCACAAATCCT 57.207 29.630 0.00 0.00 0.00 3.24
3368 5995 7.678947 ATTCTTTCACTAGTCACAAATCCTG 57.321 36.000 0.00 0.00 0.00 3.86
3369 5996 6.419484 TCTTTCACTAGTCACAAATCCTGA 57.581 37.500 0.00 0.00 0.00 3.86
3370 5997 7.009179 TCTTTCACTAGTCACAAATCCTGAT 57.991 36.000 0.00 0.00 0.00 2.90
3371 5998 8.134202 TCTTTCACTAGTCACAAATCCTGATA 57.866 34.615 0.00 0.00 0.00 2.15
3372 5999 8.762645 TCTTTCACTAGTCACAAATCCTGATAT 58.237 33.333 0.00 0.00 0.00 1.63
3373 6000 8.722480 TTTCACTAGTCACAAATCCTGATATG 57.278 34.615 0.00 0.00 0.00 1.78
3374 6001 7.423844 TCACTAGTCACAAATCCTGATATGT 57.576 36.000 0.00 0.00 0.00 2.29
3375 6002 7.851228 TCACTAGTCACAAATCCTGATATGTT 58.149 34.615 0.00 0.00 0.00 2.71
3376 6003 8.321353 TCACTAGTCACAAATCCTGATATGTTT 58.679 33.333 0.00 0.00 0.00 2.83
3377 6004 8.950210 CACTAGTCACAAATCCTGATATGTTTT 58.050 33.333 0.00 0.00 0.00 2.43
3378 6005 9.520515 ACTAGTCACAAATCCTGATATGTTTTT 57.479 29.630 0.00 0.00 0.00 1.94
3407 6034 5.639757 TGCGAAACAAATCCTGATATGTTG 58.360 37.500 0.00 0.00 36.23 3.33
3431 6058 6.826231 TGTTACCAAATCAAGACTGAACTGAA 59.174 34.615 0.00 0.00 34.49 3.02
3432 6059 7.012327 TGTTACCAAATCAAGACTGAACTGAAG 59.988 37.037 0.00 0.00 34.49 3.02
3433 6060 5.440610 ACCAAATCAAGACTGAACTGAAGT 58.559 37.500 0.00 0.00 34.49 3.01
3434 6061 6.591935 ACCAAATCAAGACTGAACTGAAGTA 58.408 36.000 0.00 0.00 34.49 2.24
3435 6062 6.483640 ACCAAATCAAGACTGAACTGAAGTAC 59.516 38.462 0.00 0.00 34.49 2.73
3436 6063 6.708054 CCAAATCAAGACTGAACTGAAGTACT 59.292 38.462 0.00 0.00 34.49 2.73
3437 6064 7.095439 CCAAATCAAGACTGAACTGAAGTACTC 60.095 40.741 0.00 0.00 34.49 2.59
3438 6065 5.455056 TCAAGACTGAACTGAAGTACTCC 57.545 43.478 0.00 0.00 0.00 3.85
3439 6066 4.281182 TCAAGACTGAACTGAAGTACTCCC 59.719 45.833 0.00 0.00 0.00 4.30
3440 6067 4.120946 AGACTGAACTGAAGTACTCCCT 57.879 45.455 0.00 0.00 0.00 4.20
3441 6068 4.083565 AGACTGAACTGAAGTACTCCCTC 58.916 47.826 0.00 0.00 0.00 4.30
3442 6069 3.166679 ACTGAACTGAAGTACTCCCTCC 58.833 50.000 0.00 0.00 0.00 4.30
3443 6070 2.164624 CTGAACTGAAGTACTCCCTCCG 59.835 54.545 0.00 0.00 0.00 4.63
3444 6071 2.169330 GAACTGAAGTACTCCCTCCGT 58.831 52.381 0.00 0.00 0.00 4.69
3445 6072 2.305858 ACTGAAGTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
3446 6073 2.169330 ACTGAAGTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 0.00 3.95
3447 6074 1.477295 CTGAAGTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
3448 6075 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
3449 6076 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
3450 6077 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
3451 6078 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3452 6079 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3453 6080 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3454 6081 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3455 6082 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3456 6083 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3457 6084 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3458 6085 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3459 6086 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3460 6087 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3461 6088 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3462 6089 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3463 6090 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3464 6091 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3488 6115 9.658799 TTTAGAAATTTCAAATGGACAACAACA 57.341 25.926 19.99 0.00 0.00 3.33
3489 6116 9.829507 TTAGAAATTTCAAATGGACAACAACAT 57.170 25.926 19.99 0.00 0.00 2.71
3491 6118 9.260002 AGAAATTTCAAATGGACAACAACATAC 57.740 29.630 19.99 0.00 0.00 2.39
3492 6119 7.636259 AATTTCAAATGGACAACAACATACG 57.364 32.000 0.00 0.00 0.00 3.06
3493 6120 4.757799 TCAAATGGACAACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
3494 6121 4.390264 TCAAATGGACAACAACATACGGA 58.610 39.130 0.00 0.00 0.00 4.69
3495 6122 5.007034 TCAAATGGACAACAACATACGGAT 58.993 37.500 0.00 0.00 0.00 4.18
3496 6123 4.963276 AATGGACAACAACATACGGATG 57.037 40.909 5.94 5.94 39.16 3.51
3498 6125 4.538746 TGGACAACAACATACGGATGTA 57.461 40.909 15.10 0.00 45.93 2.29
3499 6126 5.092554 TGGACAACAACATACGGATGTAT 57.907 39.130 15.10 2.23 45.93 2.29
3536 6163 6.734104 AGAGTGTAGATTCAGTCATTTTGC 57.266 37.500 0.00 0.00 39.44 3.68
3537 6164 6.471146 AGAGTGTAGATTCAGTCATTTTGCT 58.529 36.000 0.00 0.00 39.44 3.91
3538 6165 6.939163 AGAGTGTAGATTCAGTCATTTTGCTT 59.061 34.615 0.00 0.00 39.44 3.91
3539 6166 7.446625 AGAGTGTAGATTCAGTCATTTTGCTTT 59.553 33.333 0.00 0.00 39.44 3.51
3540 6167 7.365741 AGTGTAGATTCAGTCATTTTGCTTTG 58.634 34.615 0.00 0.00 0.00 2.77
3541 6168 7.013655 AGTGTAGATTCAGTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 0.00 2.83
3542 6169 8.289618 GTGTAGATTCAGTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 0.00 2.41
3543 6170 9.013229 TGTAGATTCAGTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
3544 6171 9.282247 GTAGATTCAGTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
3545 6172 7.889469 AGATTCAGTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
3546 6173 9.013229 AGATTCAGTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
3547 6174 9.282247 GATTCAGTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
3548 6175 7.744087 TCAGTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
3549 6176 7.806690 TCAGTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
3550 6177 7.443879 TCAGTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
3551 6178 7.535258 CAGTCATTTTGCTTTGTATGTAGTCAC 59.465 37.037 0.00 0.00 0.00 3.67
3552 6179 7.445402 AGTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
3553 6180 8.076178 GTCATTTTGCTTTGTATGTAGTCACTT 58.924 33.333 0.00 0.00 0.00 3.16
3554 6181 9.278978 TCATTTTGCTTTGTATGTAGTCACTTA 57.721 29.630 0.00 0.00 0.00 2.24
3557 6184 9.891828 TTTTGCTTTGTATGTAGTCACTTATTG 57.108 29.630 0.00 0.00 0.00 1.90
3558 6185 8.840833 TTGCTTTGTATGTAGTCACTTATTGA 57.159 30.769 0.00 0.00 0.00 2.57
3559 6186 8.840833 TGCTTTGTATGTAGTCACTTATTGAA 57.159 30.769 0.00 0.00 35.39 2.69
3560 6187 9.278978 TGCTTTGTATGTAGTCACTTATTGAAA 57.721 29.630 0.00 0.00 35.39 2.69
3592 6219 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3593 6220 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3639 6270 0.788391 CGAAGTAACCTTGCCGTGTC 59.212 55.000 0.00 0.00 0.00 3.67
3772 6414 3.006110 TCTTTTGCCTTGCAGATTCCTTG 59.994 43.478 0.00 0.00 40.61 3.61
3895 6543 1.382522 CCTGAACCATGGTCCATTCG 58.617 55.000 20.07 0.00 0.00 3.34
3925 6574 6.457528 GCAATTTAGATGGAGCAGTCTAACAC 60.458 42.308 0.00 0.00 36.84 3.32
3990 6639 7.035004 GCAGAATGTTATTGCACCTATCAAAA 58.965 34.615 0.00 0.00 39.31 2.44
4105 6754 9.362151 ACAATGACCTTAAAATACTCTTTCCAA 57.638 29.630 0.00 0.00 0.00 3.53
4111 6760 8.803235 ACCTTAAAATACTCTTTCCAATGGAAC 58.197 33.333 15.24 0.00 41.87 3.62
4113 6762 6.894339 AAAATACTCTTTCCAATGGAACGT 57.106 33.333 15.24 13.89 41.87 3.99
4114 6763 5.880054 AATACTCTTTCCAATGGAACGTG 57.120 39.130 15.24 15.64 41.87 4.49
4120 6769 0.251564 TCCAATGGAACGTGGGCAAT 60.252 50.000 0.00 0.00 36.84 3.56
4162 6811 2.943865 CGATATGTTCGCTGTTCGTTG 58.056 47.619 0.00 0.00 41.69 4.10
4179 6828 7.536855 TGTTCGTTGTAAATGTTAGTTTGGTT 58.463 30.769 0.00 0.00 33.60 3.67
4180 6829 7.697291 TGTTCGTTGTAAATGTTAGTTTGGTTC 59.303 33.333 0.00 0.00 33.60 3.62
4181 6830 7.317842 TCGTTGTAAATGTTAGTTTGGTTCA 57.682 32.000 0.00 0.00 33.60 3.18
4203 6852 0.988832 TGACCGGAGTTTAGGCCATT 59.011 50.000 9.46 0.00 0.00 3.16
4205 6854 2.775384 TGACCGGAGTTTAGGCCATTAT 59.225 45.455 9.46 0.00 0.00 1.28
4206 6855 3.201266 TGACCGGAGTTTAGGCCATTATT 59.799 43.478 9.46 0.00 0.00 1.40
4207 6856 3.813724 GACCGGAGTTTAGGCCATTATTC 59.186 47.826 9.46 0.00 0.00 1.75
4208 6857 3.146847 CCGGAGTTTAGGCCATTATTCC 58.853 50.000 5.01 5.48 0.00 3.01
4209 6858 3.181443 CCGGAGTTTAGGCCATTATTCCT 60.181 47.826 5.01 0.00 36.51 3.36
4210 6859 4.041198 CCGGAGTTTAGGCCATTATTCCTA 59.959 45.833 5.01 0.00 34.02 2.94
4211 6860 4.995487 CGGAGTTTAGGCCATTATTCCTAC 59.005 45.833 5.01 0.00 34.87 3.18
4212 6861 5.221661 CGGAGTTTAGGCCATTATTCCTACT 60.222 44.000 5.01 0.00 34.87 2.57
4213 6862 6.014840 CGGAGTTTAGGCCATTATTCCTACTA 60.015 42.308 5.01 0.00 34.87 1.82
4214 6863 7.387643 GGAGTTTAGGCCATTATTCCTACTAG 58.612 42.308 5.01 0.00 34.87 2.57
4215 6864 6.770542 AGTTTAGGCCATTATTCCTACTAGC 58.229 40.000 5.01 0.00 34.87 3.42
4216 6865 6.329197 AGTTTAGGCCATTATTCCTACTAGCA 59.671 38.462 5.01 0.00 34.87 3.49
4217 6866 4.625607 AGGCCATTATTCCTACTAGCAC 57.374 45.455 5.01 0.00 0.00 4.40
4218 6867 3.973973 AGGCCATTATTCCTACTAGCACA 59.026 43.478 5.01 0.00 0.00 4.57
4219 6868 4.412199 AGGCCATTATTCCTACTAGCACAA 59.588 41.667 5.01 0.00 0.00 3.33
4220 6869 4.515567 GGCCATTATTCCTACTAGCACAAC 59.484 45.833 0.00 0.00 0.00 3.32
4221 6870 5.368989 GCCATTATTCCTACTAGCACAACT 58.631 41.667 0.00 0.00 0.00 3.16
4222 6871 5.823045 GCCATTATTCCTACTAGCACAACTT 59.177 40.000 0.00 0.00 0.00 2.66
4223 6872 6.990349 GCCATTATTCCTACTAGCACAACTTA 59.010 38.462 0.00 0.00 0.00 2.24
4224 6873 7.041984 GCCATTATTCCTACTAGCACAACTTAC 60.042 40.741 0.00 0.00 0.00 2.34
4225 6874 8.204836 CCATTATTCCTACTAGCACAACTTACT 58.795 37.037 0.00 0.00 0.00 2.24
4226 6875 9.601217 CATTATTCCTACTAGCACAACTTACTT 57.399 33.333 0.00 0.00 0.00 2.24
4228 6877 9.649167 TTATTCCTACTAGCACAACTTACTTTC 57.351 33.333 0.00 0.00 0.00 2.62
4229 6878 6.912951 TCCTACTAGCACAACTTACTTTCT 57.087 37.500 0.00 0.00 0.00 2.52
4230 6879 6.688578 TCCTACTAGCACAACTTACTTTCTG 58.311 40.000 0.00 0.00 0.00 3.02
4231 6880 6.492429 TCCTACTAGCACAACTTACTTTCTGA 59.508 38.462 0.00 0.00 0.00 3.27
4232 6881 7.014905 TCCTACTAGCACAACTTACTTTCTGAA 59.985 37.037 0.00 0.00 0.00 3.02
4233 6882 6.846325 ACTAGCACAACTTACTTTCTGAAC 57.154 37.500 0.00 0.00 0.00 3.18
4234 6883 5.758784 ACTAGCACAACTTACTTTCTGAACC 59.241 40.000 0.00 0.00 0.00 3.62
4235 6884 4.781934 AGCACAACTTACTTTCTGAACCT 58.218 39.130 0.00 0.00 0.00 3.50
4236 6885 5.925509 AGCACAACTTACTTTCTGAACCTA 58.074 37.500 0.00 0.00 0.00 3.08
4237 6886 6.354130 AGCACAACTTACTTTCTGAACCTAA 58.646 36.000 0.00 0.00 0.00 2.69
4238 6887 6.998673 AGCACAACTTACTTTCTGAACCTAAT 59.001 34.615 0.00 0.00 0.00 1.73
4239 6888 8.154856 AGCACAACTTACTTTCTGAACCTAATA 58.845 33.333 0.00 0.00 0.00 0.98
4240 6889 8.780249 GCACAACTTACTTTCTGAACCTAATAA 58.220 33.333 0.00 0.00 0.00 1.40
4242 6891 8.985805 ACAACTTACTTTCTGAACCTAATAACG 58.014 33.333 0.00 0.00 0.00 3.18
4243 6892 8.985805 CAACTTACTTTCTGAACCTAATAACGT 58.014 33.333 0.00 0.00 0.00 3.99
4244 6893 8.530269 ACTTACTTTCTGAACCTAATAACGTG 57.470 34.615 0.00 0.00 0.00 4.49
4245 6894 8.146412 ACTTACTTTCTGAACCTAATAACGTGT 58.854 33.333 0.00 0.00 0.00 4.49
4246 6895 9.630098 CTTACTTTCTGAACCTAATAACGTGTA 57.370 33.333 0.00 0.00 0.00 2.90
4247 6896 9.979578 TTACTTTCTGAACCTAATAACGTGTAA 57.020 29.630 0.00 0.00 0.00 2.41
4248 6897 8.302965 ACTTTCTGAACCTAATAACGTGTAAC 57.697 34.615 0.00 0.00 0.00 2.50
4249 6898 7.386025 ACTTTCTGAACCTAATAACGTGTAACC 59.614 37.037 0.00 0.00 0.00 2.85
4250 6899 5.723295 TCTGAACCTAATAACGTGTAACCC 58.277 41.667 0.00 0.00 0.00 4.11
4251 6900 5.245751 TCTGAACCTAATAACGTGTAACCCA 59.754 40.000 0.00 0.00 0.00 4.51
4252 6901 6.052405 TGAACCTAATAACGTGTAACCCAT 57.948 37.500 0.00 0.00 0.00 4.00
4253 6902 6.108015 TGAACCTAATAACGTGTAACCCATC 58.892 40.000 0.00 0.00 0.00 3.51
4254 6903 5.680594 ACCTAATAACGTGTAACCCATCA 57.319 39.130 0.00 0.00 0.00 3.07
4255 6904 6.052405 ACCTAATAACGTGTAACCCATCAA 57.948 37.500 0.00 0.00 0.00 2.57
4256 6905 6.474630 ACCTAATAACGTGTAACCCATCAAA 58.525 36.000 0.00 0.00 0.00 2.69
4257 6906 7.114095 ACCTAATAACGTGTAACCCATCAAAT 58.886 34.615 0.00 0.00 0.00 2.32
4258 6907 8.266473 ACCTAATAACGTGTAACCCATCAAATA 58.734 33.333 0.00 0.00 0.00 1.40
4259 6908 9.111613 CCTAATAACGTGTAACCCATCAAATAA 57.888 33.333 0.00 0.00 0.00 1.40
4260 6909 9.925268 CTAATAACGTGTAACCCATCAAATAAC 57.075 33.333 0.00 0.00 0.00 1.89
4261 6910 5.632244 AACGTGTAACCCATCAAATAACC 57.368 39.130 0.00 0.00 0.00 2.85
4262 6911 4.913784 ACGTGTAACCCATCAAATAACCT 58.086 39.130 0.00 0.00 0.00 3.50
4263 6912 5.318630 ACGTGTAACCCATCAAATAACCTT 58.681 37.500 0.00 0.00 0.00 3.50
4264 6913 5.771165 ACGTGTAACCCATCAAATAACCTTT 59.229 36.000 0.00 0.00 0.00 3.11
4265 6914 6.090129 CGTGTAACCCATCAAATAACCTTTG 58.910 40.000 0.00 0.00 0.00 2.77
4266 6915 6.294286 CGTGTAACCCATCAAATAACCTTTGT 60.294 38.462 0.00 0.00 0.00 2.83
4267 6916 7.094720 CGTGTAACCCATCAAATAACCTTTGTA 60.095 37.037 0.00 0.00 0.00 2.41
4268 6917 8.745590 GTGTAACCCATCAAATAACCTTTGTAT 58.254 33.333 0.00 0.00 0.00 2.29
4269 6918 9.315363 TGTAACCCATCAAATAACCTTTGTATT 57.685 29.630 0.00 0.00 0.00 1.89
4272 6921 7.619965 ACCCATCAAATAACCTTTGTATTTGG 58.380 34.615 13.92 4.24 39.99 3.28
4273 6922 6.538381 CCCATCAAATAACCTTTGTATTTGGC 59.462 38.462 13.92 0.00 39.99 4.52
4274 6923 7.330262 CCATCAAATAACCTTTGTATTTGGCT 58.670 34.615 13.92 3.48 39.99 4.75
4275 6924 7.823799 CCATCAAATAACCTTTGTATTTGGCTT 59.176 33.333 13.92 1.80 39.99 4.35
4276 6925 9.868277 CATCAAATAACCTTTGTATTTGGCTTA 57.132 29.630 13.92 0.09 39.99 3.09
4280 6929 8.716646 AATAACCTTTGTATTTGGCTTAATGC 57.283 30.769 0.00 0.00 41.94 3.56
4281 6930 6.358974 AACCTTTGTATTTGGCTTAATGCT 57.641 33.333 0.00 0.00 42.39 3.79
4282 6931 7.475137 AACCTTTGTATTTGGCTTAATGCTA 57.525 32.000 0.00 0.00 42.39 3.49
4283 6932 6.863275 ACCTTTGTATTTGGCTTAATGCTAC 58.137 36.000 0.00 0.00 42.39 3.58
4284 6933 6.435904 ACCTTTGTATTTGGCTTAATGCTACA 59.564 34.615 0.00 0.00 42.39 2.74
4285 6934 6.751888 CCTTTGTATTTGGCTTAATGCTACAC 59.248 38.462 0.00 0.00 42.39 2.90
4286 6935 5.478233 TGTATTTGGCTTAATGCTACACG 57.522 39.130 0.00 0.00 42.39 4.49
4287 6936 4.938832 TGTATTTGGCTTAATGCTACACGT 59.061 37.500 0.00 0.00 42.39 4.49
4288 6937 5.413213 TGTATTTGGCTTAATGCTACACGTT 59.587 36.000 0.00 0.00 42.39 3.99
4289 6938 6.594547 TGTATTTGGCTTAATGCTACACGTTA 59.405 34.615 0.00 0.00 42.39 3.18
4290 6939 6.693315 ATTTGGCTTAATGCTACACGTTAT 57.307 33.333 0.00 0.00 42.39 1.89
4291 6940 6.503589 TTTGGCTTAATGCTACACGTTATT 57.496 33.333 0.00 0.00 42.39 1.40
4292 6941 5.728351 TGGCTTAATGCTACACGTTATTC 57.272 39.130 0.00 0.00 42.39 1.75
4293 6942 4.573201 TGGCTTAATGCTACACGTTATTCC 59.427 41.667 0.00 0.00 42.39 3.01
4294 6943 4.573201 GGCTTAATGCTACACGTTATTCCA 59.427 41.667 0.00 0.00 42.39 3.53
4295 6944 5.499047 GCTTAATGCTACACGTTATTCCAC 58.501 41.667 0.00 0.00 38.95 4.02
4296 6945 5.064198 GCTTAATGCTACACGTTATTCCACA 59.936 40.000 0.00 0.00 38.95 4.17
4297 6946 6.656314 TTAATGCTACACGTTATTCCACAG 57.344 37.500 0.00 0.00 29.85 3.66
4298 6947 3.945981 TGCTACACGTTATTCCACAGA 57.054 42.857 0.00 0.00 0.00 3.41
4299 6948 4.260139 TGCTACACGTTATTCCACAGAA 57.740 40.909 0.00 0.00 36.15 3.02
4300 6949 3.991773 TGCTACACGTTATTCCACAGAAC 59.008 43.478 0.00 0.00 33.97 3.01
4301 6950 3.991773 GCTACACGTTATTCCACAGAACA 59.008 43.478 0.00 0.00 33.97 3.18
4302 6951 4.630069 GCTACACGTTATTCCACAGAACAT 59.370 41.667 0.00 0.00 33.97 2.71
4303 6952 5.121768 GCTACACGTTATTCCACAGAACATT 59.878 40.000 0.00 0.00 33.97 2.71
4304 6953 5.356882 ACACGTTATTCCACAGAACATTG 57.643 39.130 0.00 0.00 33.97 2.82
4305 6954 4.158384 CACGTTATTCCACAGAACATTGC 58.842 43.478 0.00 0.00 33.97 3.56
4306 6955 4.072131 ACGTTATTCCACAGAACATTGCT 58.928 39.130 0.00 0.00 33.97 3.91
4307 6956 5.121611 CACGTTATTCCACAGAACATTGCTA 59.878 40.000 0.00 0.00 33.97 3.49
4308 6957 5.880332 ACGTTATTCCACAGAACATTGCTAT 59.120 36.000 0.00 0.00 33.97 2.97
4309 6958 6.374333 ACGTTATTCCACAGAACATTGCTATT 59.626 34.615 0.00 0.00 33.97 1.73
4310 6959 6.907212 CGTTATTCCACAGAACATTGCTATTC 59.093 38.462 0.00 0.00 33.97 1.75
4311 6960 7.201644 CGTTATTCCACAGAACATTGCTATTCT 60.202 37.037 0.00 0.00 35.51 2.40
4350 6999 5.135383 CCCATGGTCACTGTATTTGATCAT 58.865 41.667 11.73 0.00 44.15 2.45
4375 7024 3.885297 AGTTCACTTTGGTCACTGGATTG 59.115 43.478 0.00 0.00 0.00 2.67
4398 7047 3.725490 GGAATACCCAGATTACGGTGAC 58.275 50.000 0.00 0.00 33.36 3.67
4399 7048 3.493873 GGAATACCCAGATTACGGTGACC 60.494 52.174 0.00 0.00 33.36 4.02
4405 7054 4.202326 ACCCAGATTACGGTGACCAATATC 60.202 45.833 1.11 0.55 0.00 1.63
4424 7073 8.503196 CCAATATCACATTAGTTAATAGCGCAA 58.497 33.333 11.47 0.00 0.00 4.85
4493 7142 0.257328 TGACCTTTTGACCAGCCACA 59.743 50.000 0.00 0.00 0.00 4.17
4507 7156 4.988598 CACACAAGCGAGGCGGGT 62.989 66.667 0.00 0.00 0.00 5.28
4512 7161 1.081442 CAAGCGAGGCGGGTTTTTC 60.081 57.895 0.00 0.00 0.00 2.29
4520 7170 0.955905 GGCGGGTTTTTCTTGCACTA 59.044 50.000 0.00 0.00 0.00 2.74
4576 7229 5.806955 TCCATTGTATTAAAACCCCCTCT 57.193 39.130 0.00 0.00 0.00 3.69
4599 7255 1.512735 GTCCTCCAAATCCCTAGCCT 58.487 55.000 0.00 0.00 0.00 4.58
4651 7315 3.394719 CCTAGCCTTATTCCTCTTTCGC 58.605 50.000 0.00 0.00 0.00 4.70
4690 7365 4.827087 CCAGCACCGCTCATCGCT 62.827 66.667 0.00 0.00 36.40 4.93
4767 7442 3.288308 CTGCCGCTCTTCTCACCGT 62.288 63.158 0.00 0.00 0.00 4.83
4804 7482 4.899239 CCCTCATCGAGTGCCCGC 62.899 72.222 0.00 0.00 0.00 6.13
4823 7501 4.678743 GGAGGGGGTGTGGTTGCC 62.679 72.222 0.00 0.00 0.00 4.52
4898 7576 4.875713 GCCCCGGCCATGGTGTAG 62.876 72.222 14.67 2.31 34.56 2.74
4965 7668 5.787953 TTGGTCTCTGATTTTGCATTCAA 57.212 34.783 0.00 0.00 0.00 2.69
4973 7676 8.092068 TCTCTGATTTTGCATTCAATTTGACAT 58.908 29.630 0.00 0.00 31.33 3.06
5047 7750 4.502962 GAGAAGATGTTTCTCACTGGAGG 58.497 47.826 11.04 0.00 43.25 4.30
5081 7784 2.225091 TGCAATTGGGTGGTCTGAAGAT 60.225 45.455 7.72 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.959507 ACACAAAGCAAAAGGGTGAC 57.040 45.000 0.00 0.00 33.82 3.67
13 14 8.616942 TGAGAAAAAGAACATCGATAACACAAA 58.383 29.630 0.00 0.00 0.00 2.83
18 19 8.873830 TCTCATGAGAAAAAGAACATCGATAAC 58.126 33.333 23.17 0.00 33.91 1.89
19 20 9.605275 ATCTCATGAGAAAAAGAACATCGATAA 57.395 29.630 28.40 0.00 41.36 1.75
20 21 9.605275 AATCTCATGAGAAAAAGAACATCGATA 57.395 29.630 28.40 0.32 41.36 2.92
21 22 8.503458 AATCTCATGAGAAAAAGAACATCGAT 57.497 30.769 28.40 4.73 41.36 3.59
23 24 7.903946 CAGAATCTCATGAGAAAAAGAACATCG 59.096 37.037 28.40 4.97 41.36 3.84
30 39 6.910995 AGCAACAGAATCTCATGAGAAAAAG 58.089 36.000 28.40 19.81 41.36 2.27
32 41 6.236409 AGAGCAACAGAATCTCATGAGAAAA 58.764 36.000 28.40 7.31 41.36 2.29
36 45 4.571580 GGAAGAGCAACAGAATCTCATGAG 59.428 45.833 17.07 17.07 0.00 2.90
37 46 4.224594 AGGAAGAGCAACAGAATCTCATGA 59.775 41.667 0.00 0.00 0.00 3.07
52 61 5.238583 TGTAGCAGTTTTTCTAGGAAGAGC 58.761 41.667 0.00 0.00 31.96 4.09
79 88 2.303175 TGTCGGTAAAGCAAGCCTTTT 58.697 42.857 0.00 0.00 40.85 2.27
106 116 9.923143 AAGAAATATATGCGTGTATTACTGCTA 57.077 29.630 8.19 4.42 32.54 3.49
125 135 7.510549 AGCAAGTTTCAGTAAGCAAGAAATA 57.489 32.000 0.00 0.00 34.23 1.40
293 304 1.523095 GTCCTGCGCACGATATTCTTC 59.477 52.381 5.66 0.00 0.00 2.87
305 316 0.582005 GACATAAATCGGTCCTGCGC 59.418 55.000 0.00 0.00 0.00 6.09
311 322 8.156994 AGTAGAGAACTAGACATAAATCGGTC 57.843 38.462 0.00 0.00 36.36 4.79
312 323 9.624373 TTAGTAGAGAACTAGACATAAATCGGT 57.376 33.333 0.00 0.00 41.70 4.69
379 391 0.764890 TTACAGGCAAGCTGTGGAGT 59.235 50.000 4.55 0.00 36.37 3.85
541 557 3.067106 TCAGTGCGAAGATTTTCAGACC 58.933 45.455 0.00 0.00 32.67 3.85
607 626 2.297701 GACCCACTGAGAAAACAAGCA 58.702 47.619 0.00 0.00 0.00 3.91
618 637 4.842531 ATCAACATACATGACCCACTGA 57.157 40.909 0.00 0.00 0.00 3.41
619 638 5.188434 AGAATCAACATACATGACCCACTG 58.812 41.667 0.00 0.00 0.00 3.66
675 759 7.585573 GTCTAAATGTCAATTCTGCGATGAATC 59.414 37.037 4.26 0.00 35.82 2.52
677 761 6.455513 CGTCTAAATGTCAATTCTGCGATGAA 60.456 38.462 0.00 0.00 0.00 2.57
678 762 5.005682 CGTCTAAATGTCAATTCTGCGATGA 59.994 40.000 0.00 0.00 0.00 2.92
679 763 5.005682 TCGTCTAAATGTCAATTCTGCGATG 59.994 40.000 0.00 0.00 0.00 3.84
680 764 5.109210 TCGTCTAAATGTCAATTCTGCGAT 58.891 37.500 0.00 0.00 0.00 4.58
682 766 4.840401 TCGTCTAAATGTCAATTCTGCG 57.160 40.909 0.00 0.00 0.00 5.18
683 767 6.467047 CACATTCGTCTAAATGTCAATTCTGC 59.533 38.462 0.00 0.00 45.68 4.26
684 768 7.521529 ACACATTCGTCTAAATGTCAATTCTG 58.478 34.615 0.00 0.00 45.68 3.02
685 769 7.672983 ACACATTCGTCTAAATGTCAATTCT 57.327 32.000 0.00 0.00 45.68 2.40
686 770 8.440059 TGTACACATTCGTCTAAATGTCAATTC 58.560 33.333 0.00 0.00 45.68 2.17
687 771 8.317891 TGTACACATTCGTCTAAATGTCAATT 57.682 30.769 0.00 0.00 45.68 2.32
688 772 7.413000 GCTGTACACATTCGTCTAAATGTCAAT 60.413 37.037 0.00 0.00 45.68 2.57
689 773 6.128661 GCTGTACACATTCGTCTAAATGTCAA 60.129 38.462 0.00 0.00 45.68 3.18
690 774 5.347635 GCTGTACACATTCGTCTAAATGTCA 59.652 40.000 0.00 0.00 45.68 3.58
691 775 5.220416 GGCTGTACACATTCGTCTAAATGTC 60.220 44.000 0.00 0.00 45.68 3.06
693 777 4.034048 GGGCTGTACACATTCGTCTAAATG 59.966 45.833 0.00 0.00 41.46 2.32
694 778 4.189231 GGGCTGTACACATTCGTCTAAAT 58.811 43.478 0.00 0.00 0.00 1.40
695 779 3.007074 TGGGCTGTACACATTCGTCTAAA 59.993 43.478 0.00 0.00 0.00 1.85
696 780 2.563620 TGGGCTGTACACATTCGTCTAA 59.436 45.455 0.00 0.00 0.00 2.10
697 781 2.172679 TGGGCTGTACACATTCGTCTA 58.827 47.619 0.00 0.00 0.00 2.59
698 782 0.973632 TGGGCTGTACACATTCGTCT 59.026 50.000 0.00 0.00 0.00 4.18
699 783 1.665679 CATGGGCTGTACACATTCGTC 59.334 52.381 0.00 0.00 0.00 4.20
700 784 1.678728 CCATGGGCTGTACACATTCGT 60.679 52.381 2.85 0.00 0.00 3.85
701 785 1.016627 CCATGGGCTGTACACATTCG 58.983 55.000 2.85 0.00 0.00 3.34
702 786 1.392589 CCCATGGGCTGTACACATTC 58.607 55.000 20.41 0.00 0.00 2.67
703 787 3.594453 CCCATGGGCTGTACACATT 57.406 52.632 20.41 0.00 0.00 2.71
714 798 2.369394 GAGTTCAAAGTAGCCCATGGG 58.631 52.381 27.87 27.87 38.57 4.00
715 799 2.009774 CGAGTTCAAAGTAGCCCATGG 58.990 52.381 4.14 4.14 0.00 3.66
716 800 1.398390 GCGAGTTCAAAGTAGCCCATG 59.602 52.381 0.00 0.00 0.00 3.66
717 801 1.003118 TGCGAGTTCAAAGTAGCCCAT 59.997 47.619 0.00 0.00 0.00 4.00
718 802 0.394938 TGCGAGTTCAAAGTAGCCCA 59.605 50.000 0.00 0.00 0.00 5.36
719 803 1.079503 CTGCGAGTTCAAAGTAGCCC 58.920 55.000 0.00 0.00 0.00 5.19
720 804 1.996191 CTCTGCGAGTTCAAAGTAGCC 59.004 52.381 0.00 0.00 0.00 3.93
721 805 2.678324 ACTCTGCGAGTTCAAAGTAGC 58.322 47.619 5.54 0.00 40.28 3.58
722 806 6.952935 AAATACTCTGCGAGTTCAAAGTAG 57.047 37.500 14.71 0.00 40.28 2.57
723 807 6.147164 CCAAAATACTCTGCGAGTTCAAAGTA 59.853 38.462 14.71 1.79 40.28 2.24
724 808 5.049405 CCAAAATACTCTGCGAGTTCAAAGT 60.049 40.000 14.71 0.00 40.28 2.66
725 809 5.385617 CCAAAATACTCTGCGAGTTCAAAG 58.614 41.667 14.71 5.37 40.28 2.77
726 810 4.320202 GCCAAAATACTCTGCGAGTTCAAA 60.320 41.667 14.71 0.24 40.28 2.69
727 811 3.188460 GCCAAAATACTCTGCGAGTTCAA 59.812 43.478 14.71 0.55 40.28 2.69
728 812 2.742053 GCCAAAATACTCTGCGAGTTCA 59.258 45.455 14.71 1.17 40.28 3.18
729 813 3.391227 GCCAAAATACTCTGCGAGTTC 57.609 47.619 14.71 0.00 40.28 3.01
734 818 0.742990 TCCCGCCAAAATACTCTGCG 60.743 55.000 0.00 0.00 44.47 5.18
735 819 1.017387 CTCCCGCCAAAATACTCTGC 58.983 55.000 0.00 0.00 0.00 4.26
736 820 2.403252 ACTCCCGCCAAAATACTCTG 57.597 50.000 0.00 0.00 0.00 3.35
737 821 2.434702 CCTACTCCCGCCAAAATACTCT 59.565 50.000 0.00 0.00 0.00 3.24
738 822 2.433239 TCCTACTCCCGCCAAAATACTC 59.567 50.000 0.00 0.00 0.00 2.59
739 823 2.434702 CTCCTACTCCCGCCAAAATACT 59.565 50.000 0.00 0.00 0.00 2.12
740 824 2.169978 ACTCCTACTCCCGCCAAAATAC 59.830 50.000 0.00 0.00 0.00 1.89
741 825 2.474112 ACTCCTACTCCCGCCAAAATA 58.526 47.619 0.00 0.00 0.00 1.40
742 826 1.286248 ACTCCTACTCCCGCCAAAAT 58.714 50.000 0.00 0.00 0.00 1.82
743 827 1.061546 AACTCCTACTCCCGCCAAAA 58.938 50.000 0.00 0.00 0.00 2.44
744 828 1.941377 TAACTCCTACTCCCGCCAAA 58.059 50.000 0.00 0.00 0.00 3.28
745 829 1.551883 GTTAACTCCTACTCCCGCCAA 59.448 52.381 0.00 0.00 0.00 4.52
746 830 1.188863 GTTAACTCCTACTCCCGCCA 58.811 55.000 0.00 0.00 0.00 5.69
747 831 0.101939 CGTTAACTCCTACTCCCGCC 59.898 60.000 3.71 0.00 0.00 6.13
748 832 1.098050 TCGTTAACTCCTACTCCCGC 58.902 55.000 3.71 0.00 0.00 6.13
749 833 4.382345 AATTCGTTAACTCCTACTCCCG 57.618 45.455 3.71 0.00 0.00 5.14
750 834 6.128090 CCAAAAATTCGTTAACTCCTACTCCC 60.128 42.308 3.71 0.00 0.00 4.30
751 835 6.652062 TCCAAAAATTCGTTAACTCCTACTCC 59.348 38.462 3.71 0.00 0.00 3.85
752 836 7.387122 AGTCCAAAAATTCGTTAACTCCTACTC 59.613 37.037 3.71 0.00 0.00 2.59
753 837 7.222161 AGTCCAAAAATTCGTTAACTCCTACT 58.778 34.615 3.71 0.00 0.00 2.57
754 838 7.387122 AGAGTCCAAAAATTCGTTAACTCCTAC 59.613 37.037 3.71 0.00 33.95 3.18
755 839 7.386848 CAGAGTCCAAAAATTCGTTAACTCCTA 59.613 37.037 3.71 0.00 33.95 2.94
756 840 6.204882 CAGAGTCCAAAAATTCGTTAACTCCT 59.795 38.462 3.71 0.00 33.95 3.69
757 841 6.371389 CAGAGTCCAAAAATTCGTTAACTCC 58.629 40.000 3.71 0.00 33.95 3.85
758 842 6.204108 TCCAGAGTCCAAAAATTCGTTAACTC 59.796 38.462 3.71 0.00 33.71 3.01
759 843 6.059484 TCCAGAGTCCAAAAATTCGTTAACT 58.941 36.000 3.71 0.00 0.00 2.24
760 844 6.308371 TCCAGAGTCCAAAAATTCGTTAAC 57.692 37.500 0.00 0.00 0.00 2.01
761 845 6.945938 TTCCAGAGTCCAAAAATTCGTTAA 57.054 33.333 0.00 0.00 0.00 2.01
762 846 6.945938 TTTCCAGAGTCCAAAAATTCGTTA 57.054 33.333 0.00 0.00 0.00 3.18
763 847 5.845391 TTTCCAGAGTCCAAAAATTCGTT 57.155 34.783 0.00 0.00 0.00 3.85
764 848 5.845391 TTTTCCAGAGTCCAAAAATTCGT 57.155 34.783 0.00 0.00 0.00 3.85
788 872 9.965824 ATTCATTAACTCACGTTTCAGATTTTT 57.034 25.926 0.00 0.00 34.59 1.94
800 884 7.059488 CGAAGTCCAAAAATTCATTAACTCACG 59.941 37.037 0.00 0.00 0.00 4.35
801 885 8.073768 TCGAAGTCCAAAAATTCATTAACTCAC 58.926 33.333 0.00 0.00 0.00 3.51
802 886 8.160521 TCGAAGTCCAAAAATTCATTAACTCA 57.839 30.769 0.00 0.00 0.00 3.41
825 909 4.734917 AGATAAGGTGAGTTCGAACTTCG 58.265 43.478 30.22 4.72 39.88 3.79
902 1013 1.836158 CCCATGGGTTTGGTGCACA 60.836 57.895 23.93 1.62 34.77 4.57
903 1014 3.059099 CCCATGGGTTTGGTGCAC 58.941 61.111 23.93 8.80 34.77 4.57
904 1015 2.921972 GCCCATGGGTTTGGTGCA 60.922 61.111 31.58 0.00 34.78 4.57
905 1016 3.705289 GGCCCATGGGTTTGGTGC 61.705 66.667 31.58 15.10 37.65 5.01
906 1017 2.203758 TGGCCCATGGGTTTGGTG 60.204 61.111 31.58 5.02 37.65 4.17
907 1018 2.120274 CTGGCCCATGGGTTTGGT 59.880 61.111 31.58 0.00 37.65 3.67
908 1019 3.393106 GCTGGCCCATGGGTTTGG 61.393 66.667 31.58 19.16 37.65 3.28
909 1020 3.393106 GGCTGGCCCATGGGTTTG 61.393 66.667 31.58 20.94 37.65 2.93
910 1021 3.910784 CTGGCTGGCCCATGGGTTT 62.911 63.158 31.58 0.00 44.33 3.27
911 1022 4.387343 CTGGCTGGCCCATGGGTT 62.387 66.667 31.58 0.00 44.33 4.11
913 1024 4.517934 CTCTGGCTGGCCCATGGG 62.518 72.222 27.87 27.87 44.33 4.00
914 1025 3.414193 TCTCTGGCTGGCCCATGG 61.414 66.667 4.14 4.14 44.33 3.66
915 1026 2.124403 GTCTCTGGCTGGCCCATG 60.124 66.667 9.28 0.09 44.33 3.66
916 1027 3.790437 CGTCTCTGGCTGGCCCAT 61.790 66.667 9.28 0.00 44.33 4.00
919 1030 4.479993 ATGCGTCTCTGGCTGGCC 62.480 66.667 4.43 4.43 0.00 5.36
964 1087 1.630369 TCTGTGGTGGATGGGAAAGAG 59.370 52.381 0.00 0.00 0.00 2.85
973 1096 0.176680 GTGAGCGATCTGTGGTGGAT 59.823 55.000 0.90 0.00 0.00 3.41
1045 1178 3.734293 GCATCTTGCTTGCTTCTGGAATC 60.734 47.826 0.00 0.00 40.96 2.52
1046 1179 2.165845 GCATCTTGCTTGCTTCTGGAAT 59.834 45.455 0.00 0.00 40.96 3.01
1047 1180 1.542915 GCATCTTGCTTGCTTCTGGAA 59.457 47.619 0.00 0.00 40.96 3.53
1048 1181 1.171308 GCATCTTGCTTGCTTCTGGA 58.829 50.000 0.00 0.00 40.96 3.86
1049 1182 3.715854 GCATCTTGCTTGCTTCTGG 57.284 52.632 0.00 0.00 40.96 3.86
2101 2621 4.568359 CCCTTATCAATGTCGAGTTCACAG 59.432 45.833 0.00 0.00 0.00 3.66
2137 2660 4.997395 GTGATGCTGTCTGGAAAAGAACTA 59.003 41.667 0.00 0.00 36.40 2.24
2182 2705 3.119708 GGAGCATTACAGGCACAAAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
2252 2787 2.836479 TGAATCAAGCATGCATGTCG 57.164 45.000 26.79 15.61 0.00 4.35
2276 2811 9.620259 CCTAGGAAACTTCAGAGCTTTAATATT 57.380 33.333 1.05 0.00 43.67 1.28
2282 2817 3.329225 AGCCTAGGAAACTTCAGAGCTTT 59.671 43.478 14.75 0.00 43.67 3.51
2301 2836 4.529109 TGTGCACCCTAAAATTAAAGCC 57.471 40.909 15.69 0.00 0.00 4.35
2302 2837 5.538118 ACTTGTGCACCCTAAAATTAAAGC 58.462 37.500 15.69 0.00 0.00 3.51
2404 2962 9.110502 CCCTTCAGAAACTTAAATACAGATACC 57.889 37.037 0.00 0.00 0.00 2.73
2416 2974 4.508405 CCAATCACCCCCTTCAGAAACTTA 60.508 45.833 0.00 0.00 0.00 2.24
2474 4335 7.817418 AAAACGTATGGGTCTATATGCAATT 57.183 32.000 0.00 0.00 0.00 2.32
2498 4359 6.055588 GCTAATGATGGCCAGTTTAGTTCTA 58.944 40.000 22.94 5.06 0.00 2.10
2525 4386 5.400485 GCCTGCAGCATTTTAGAATAAATCG 59.600 40.000 8.66 0.00 42.97 3.34
2585 4702 6.099990 ACAATCCCATATCCATTGCAATCAAA 59.900 34.615 9.53 0.00 35.56 2.69
2668 4790 4.354587 GCTTAGGCATTTAACATGACAGC 58.645 43.478 0.00 4.23 38.54 4.40
2734 4856 9.725019 ACAAATGATACAGAACAATGAGAACTA 57.275 29.630 0.00 0.00 0.00 2.24
2827 4999 2.507484 CATGTCTGCCAAAGTCTTCCA 58.493 47.619 0.00 0.00 0.00 3.53
2889 5061 1.291877 AAGTTAGCTGGCGTGCTTCG 61.292 55.000 9.95 0.00 43.74 3.79
3030 5215 2.610374 TCCTGCAAGTAACACGTTGAAC 59.390 45.455 0.00 0.00 0.00 3.18
3031 5216 2.869801 CTCCTGCAAGTAACACGTTGAA 59.130 45.455 0.00 0.00 0.00 2.69
3032 5217 2.159014 ACTCCTGCAAGTAACACGTTGA 60.159 45.455 0.00 0.00 0.00 3.18
3036 5221 3.650139 ACTTACTCCTGCAAGTAACACG 58.350 45.455 6.86 1.94 36.93 4.49
3148 5569 8.506083 AGGAGTTGGAATTAAGGATGACAATAT 58.494 33.333 0.00 0.00 0.00 1.28
3259 5839 7.508296 GTCTAGGGTATTGGGTATAAGTCAGAA 59.492 40.741 0.00 0.00 0.00 3.02
3300 5926 5.044402 AGGCAGGATACCTTTTAGCCTTTTA 60.044 40.000 11.82 0.00 43.81 1.52
3314 5941 2.501723 TCAAGGTGAGAAGGCAGGATAC 59.498 50.000 0.00 0.00 0.00 2.24
3383 6010 5.895636 ACATATCAGGATTTGTTTCGCAA 57.104 34.783 0.34 0.00 30.57 4.85
3384 6011 5.182950 ACAACATATCAGGATTTGTTTCGCA 59.817 36.000 13.19 0.00 39.69 5.10
3385 6012 5.640732 ACAACATATCAGGATTTGTTTCGC 58.359 37.500 13.19 0.00 39.69 4.70
3386 6013 7.696453 GGTAACAACATATCAGGATTTGTTTCG 59.304 37.037 13.19 7.84 39.69 3.46
3387 6014 8.911247 GGTAACAACATATCAGGATTTGTTTC 57.089 34.615 13.19 9.42 39.69 2.78
3407 6034 6.861065 TCAGTTCAGTCTTGATTTGGTAAC 57.139 37.500 0.00 0.00 32.27 2.50
3431 6058 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3432 6059 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3433 6060 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3434 6061 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3435 6062 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3436 6063 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3437 6064 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3438 6065 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3462 6089 9.658799 TGTTGTTGTCCATTTGAAATTTCTAAA 57.341 25.926 18.64 15.99 0.00 1.85
3463 6090 9.829507 ATGTTGTTGTCCATTTGAAATTTCTAA 57.170 25.926 18.64 17.10 0.00 2.10
3465 6092 9.260002 GTATGTTGTTGTCCATTTGAAATTTCT 57.740 29.630 18.64 0.00 0.00 2.52
3466 6093 8.213812 CGTATGTTGTTGTCCATTTGAAATTTC 58.786 33.333 11.41 11.41 0.00 2.17
3467 6094 7.170658 CCGTATGTTGTTGTCCATTTGAAATTT 59.829 33.333 0.00 0.00 0.00 1.82
3468 6095 6.644592 CCGTATGTTGTTGTCCATTTGAAATT 59.355 34.615 0.00 0.00 0.00 1.82
3469 6096 6.015856 TCCGTATGTTGTTGTCCATTTGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
3470 6097 5.299531 TCCGTATGTTGTTGTCCATTTGAAA 59.700 36.000 0.00 0.00 0.00 2.69
3471 6098 4.822350 TCCGTATGTTGTTGTCCATTTGAA 59.178 37.500 0.00 0.00 0.00 2.69
3472 6099 4.390264 TCCGTATGTTGTTGTCCATTTGA 58.610 39.130 0.00 0.00 0.00 2.69
3473 6100 4.757799 TCCGTATGTTGTTGTCCATTTG 57.242 40.909 0.00 0.00 0.00 2.32
3474 6101 4.764823 ACATCCGTATGTTGTTGTCCATTT 59.235 37.500 0.00 0.00 44.07 2.32
3475 6102 4.331968 ACATCCGTATGTTGTTGTCCATT 58.668 39.130 0.00 0.00 44.07 3.16
3476 6103 3.950397 ACATCCGTATGTTGTTGTCCAT 58.050 40.909 0.00 0.00 44.07 3.41
3477 6104 3.410631 ACATCCGTATGTTGTTGTCCA 57.589 42.857 0.00 0.00 44.07 4.02
3478 6105 5.403897 CATACATCCGTATGTTGTTGTCC 57.596 43.478 0.00 0.00 46.70 4.02
3510 6137 8.721478 GCAAAATGACTGAATCTACACTCTAAA 58.279 33.333 0.00 0.00 0.00 1.85
3511 6138 8.097038 AGCAAAATGACTGAATCTACACTCTAA 58.903 33.333 0.00 0.00 0.00 2.10
3512 6139 7.615403 AGCAAAATGACTGAATCTACACTCTA 58.385 34.615 0.00 0.00 0.00 2.43
3513 6140 6.471146 AGCAAAATGACTGAATCTACACTCT 58.529 36.000 0.00 0.00 0.00 3.24
3514 6141 6.734104 AGCAAAATGACTGAATCTACACTC 57.266 37.500 0.00 0.00 0.00 3.51
3515 6142 7.013655 ACAAAGCAAAATGACTGAATCTACACT 59.986 33.333 0.00 0.00 0.00 3.55
3516 6143 7.141363 ACAAAGCAAAATGACTGAATCTACAC 58.859 34.615 0.00 0.00 0.00 2.90
3517 6144 7.275888 ACAAAGCAAAATGACTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
3518 6145 9.282247 CATACAAAGCAAAATGACTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
3519 6146 9.013229 ACATACAAAGCAAAATGACTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
3520 6147 7.889469 ACATACAAAGCAAAATGACTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
3521 6148 9.282247 CTACATACAAAGCAAAATGACTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
3522 6149 8.796475 ACTACATACAAAGCAAAATGACTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
3523 6150 8.165239 ACTACATACAAAGCAAAATGACTGAA 57.835 30.769 0.00 0.00 0.00 3.02
3524 6151 7.443879 TGACTACATACAAAGCAAAATGACTGA 59.556 33.333 0.00 0.00 0.00 3.41
3525 6152 7.535258 GTGACTACATACAAAGCAAAATGACTG 59.465 37.037 0.00 0.00 0.00 3.51
3526 6153 7.445402 AGTGACTACATACAAAGCAAAATGACT 59.555 33.333 0.00 0.00 0.00 3.41
3527 6154 7.584987 AGTGACTACATACAAAGCAAAATGAC 58.415 34.615 0.00 0.00 0.00 3.06
3528 6155 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
3531 6158 9.891828 CAATAAGTGACTACATACAAAGCAAAA 57.108 29.630 0.00 0.00 0.00 2.44
3532 6159 9.278978 TCAATAAGTGACTACATACAAAGCAAA 57.721 29.630 0.00 0.00 0.00 3.68
3533 6160 8.840833 TCAATAAGTGACTACATACAAAGCAA 57.159 30.769 0.00 0.00 0.00 3.91
3534 6161 8.840833 TTCAATAAGTGACTACATACAAAGCA 57.159 30.769 0.00 0.00 35.39 3.91
3566 6193 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3567 6194 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3568 6195 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3569 6196 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3570 6197 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3571 6198 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3572 6199 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3573 6200 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3574 6201 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
3575 6202 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
3576 6203 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
3577 6204 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
3578 6205 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
3579 6206 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
3580 6207 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
3581 6208 3.393426 AACATACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
3582 6209 2.249309 AACATACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
3583 6210 2.500504 AGAAACATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
3584 6211 3.889520 AGAAACATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
3585 6212 3.868754 GCAAGAAACATACTCCCTCCGTT 60.869 47.826 0.00 0.00 0.00 4.44
3586 6213 2.354805 GCAAGAAACATACTCCCTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
3587 6214 2.093447 AGCAAGAAACATACTCCCTCCG 60.093 50.000 0.00 0.00 0.00 4.63
3588 6215 3.636153 AGCAAGAAACATACTCCCTCC 57.364 47.619 0.00 0.00 0.00 4.30
3589 6216 5.346181 ACTAGCAAGAAACATACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
3590 6217 6.841755 AGATACTAGCAAGAAACATACTCCCT 59.158 38.462 0.00 0.00 0.00 4.20
3591 6218 7.056844 AGATACTAGCAAGAAACATACTCCC 57.943 40.000 0.00 0.00 0.00 4.30
3592 6219 6.858993 CGAGATACTAGCAAGAAACATACTCC 59.141 42.308 0.00 0.00 0.00 3.85
3593 6220 7.419204 ACGAGATACTAGCAAGAAACATACTC 58.581 38.462 0.00 0.00 0.00 2.59
3634 6265 6.355638 GTCTGTTTTGTAAATCTCAGACACG 58.644 40.000 19.98 0.00 45.95 4.49
3639 6270 8.993121 ACTGTATGTCTGTTTTGTAAATCTCAG 58.007 33.333 0.00 0.00 0.00 3.35
3689 6324 8.999431 TGGATACTTTTCTACAAAGAACATGTC 58.001 33.333 0.00 0.00 38.46 3.06
3772 6414 0.798776 CTCAGTTGTCGGTCCATTGC 59.201 55.000 0.00 0.00 0.00 3.56
3895 6543 3.141398 TGCTCCATCTAAATTGCCGATC 58.859 45.455 0.00 0.00 0.00 3.69
3990 6639 9.028284 ACCAAAACAATCTGATCAAACATATCT 57.972 29.630 0.00 0.00 0.00 1.98
4004 6653 4.832266 TGACCTATTGCACCAAAACAATCT 59.168 37.500 0.00 0.00 37.63 2.40
4033 6682 7.541091 GCATGCATTTCTTATCATCATTACCAG 59.459 37.037 14.21 0.00 0.00 4.00
4105 6754 2.632512 AGAAAAATTGCCCACGTTCCAT 59.367 40.909 0.00 0.00 0.00 3.41
4111 6760 0.033228 TGCCAGAAAAATTGCCCACG 59.967 50.000 0.00 0.00 0.00 4.94
4113 6762 0.033228 CGTGCCAGAAAAATTGCCCA 59.967 50.000 0.00 0.00 0.00 5.36
4114 6763 0.033366 ACGTGCCAGAAAAATTGCCC 59.967 50.000 0.00 0.00 0.00 5.36
4120 6769 1.950828 TTCCGTACGTGCCAGAAAAA 58.049 45.000 15.21 0.00 0.00 1.94
4145 6794 5.177881 ACATTTACAACGAACAGCGAACATA 59.822 36.000 0.00 0.00 44.57 2.29
4146 6795 4.024387 ACATTTACAACGAACAGCGAACAT 60.024 37.500 0.00 0.00 44.57 2.71
4152 6801 6.141685 CCAAACTAACATTTACAACGAACAGC 59.858 38.462 0.00 0.00 0.00 4.40
4161 6810 9.522804 GTCAATTGAACCAAACTAACATTTACA 57.477 29.630 10.35 0.00 0.00 2.41
4162 6811 8.974408 GGTCAATTGAACCAAACTAACATTTAC 58.026 33.333 12.76 0.00 0.00 2.01
4179 6828 2.617021 GGCCTAAACTCCGGTCAATTGA 60.617 50.000 3.38 3.38 0.00 2.57
4180 6829 1.743394 GGCCTAAACTCCGGTCAATTG 59.257 52.381 0.00 0.00 0.00 2.32
4181 6830 1.353022 TGGCCTAAACTCCGGTCAATT 59.647 47.619 3.32 0.00 30.73 2.32
4203 6852 9.032624 AGAAAGTAAGTTGTGCTAGTAGGAATA 57.967 33.333 0.00 0.00 0.00 1.75
4205 6854 7.014905 TCAGAAAGTAAGTTGTGCTAGTAGGAA 59.985 37.037 0.00 0.00 0.00 3.36
4206 6855 6.492429 TCAGAAAGTAAGTTGTGCTAGTAGGA 59.508 38.462 0.00 0.00 0.00 2.94
4207 6856 6.688578 TCAGAAAGTAAGTTGTGCTAGTAGG 58.311 40.000 0.00 0.00 0.00 3.18
4208 6857 7.116519 GGTTCAGAAAGTAAGTTGTGCTAGTAG 59.883 40.741 0.00 0.00 0.00 2.57
4209 6858 6.927381 GGTTCAGAAAGTAAGTTGTGCTAGTA 59.073 38.462 0.00 0.00 0.00 1.82
4210 6859 5.758784 GGTTCAGAAAGTAAGTTGTGCTAGT 59.241 40.000 0.00 0.00 0.00 2.57
4211 6860 5.992217 AGGTTCAGAAAGTAAGTTGTGCTAG 59.008 40.000 0.00 0.00 0.00 3.42
4212 6861 5.925509 AGGTTCAGAAAGTAAGTTGTGCTA 58.074 37.500 0.00 0.00 0.00 3.49
4213 6862 4.781934 AGGTTCAGAAAGTAAGTTGTGCT 58.218 39.130 0.00 0.00 0.00 4.40
4214 6863 6.613755 TTAGGTTCAGAAAGTAAGTTGTGC 57.386 37.500 0.00 0.00 0.00 4.57
4216 6865 8.985805 CGTTATTAGGTTCAGAAAGTAAGTTGT 58.014 33.333 0.00 0.00 0.00 3.32
4217 6866 8.985805 ACGTTATTAGGTTCAGAAAGTAAGTTG 58.014 33.333 0.00 0.00 0.00 3.16
4218 6867 8.985805 CACGTTATTAGGTTCAGAAAGTAAGTT 58.014 33.333 0.00 0.00 0.00 2.66
4219 6868 8.146412 ACACGTTATTAGGTTCAGAAAGTAAGT 58.854 33.333 0.00 0.00 0.00 2.24
4220 6869 8.530269 ACACGTTATTAGGTTCAGAAAGTAAG 57.470 34.615 0.00 0.00 0.00 2.34
4221 6870 9.979578 TTACACGTTATTAGGTTCAGAAAGTAA 57.020 29.630 0.00 0.00 0.00 2.24
4222 6871 9.410556 GTTACACGTTATTAGGTTCAGAAAGTA 57.589 33.333 0.00 0.00 0.00 2.24
4223 6872 7.386025 GGTTACACGTTATTAGGTTCAGAAAGT 59.614 37.037 0.00 0.00 0.00 2.66
4224 6873 7.148523 GGGTTACACGTTATTAGGTTCAGAAAG 60.149 40.741 0.00 0.00 0.00 2.62
4225 6874 6.650390 GGGTTACACGTTATTAGGTTCAGAAA 59.350 38.462 0.00 0.00 0.00 2.52
4226 6875 6.165577 GGGTTACACGTTATTAGGTTCAGAA 58.834 40.000 0.00 0.00 0.00 3.02
4227 6876 5.245751 TGGGTTACACGTTATTAGGTTCAGA 59.754 40.000 0.00 0.00 0.00 3.27
4228 6877 5.481105 TGGGTTACACGTTATTAGGTTCAG 58.519 41.667 0.00 0.00 0.00 3.02
4229 6878 5.480642 TGGGTTACACGTTATTAGGTTCA 57.519 39.130 0.00 0.00 0.00 3.18
4230 6879 6.108015 TGATGGGTTACACGTTATTAGGTTC 58.892 40.000 0.00 0.00 0.00 3.62
4231 6880 6.052405 TGATGGGTTACACGTTATTAGGTT 57.948 37.500 0.00 0.00 0.00 3.50
4232 6881 5.680594 TGATGGGTTACACGTTATTAGGT 57.319 39.130 0.00 0.00 0.00 3.08
4233 6882 6.988622 TTTGATGGGTTACACGTTATTAGG 57.011 37.500 0.00 0.00 0.00 2.69
4234 6883 9.925268 GTTATTTGATGGGTTACACGTTATTAG 57.075 33.333 0.00 0.00 0.00 1.73
4235 6884 8.891720 GGTTATTTGATGGGTTACACGTTATTA 58.108 33.333 0.00 0.00 0.00 0.98
4236 6885 7.612633 AGGTTATTTGATGGGTTACACGTTATT 59.387 33.333 0.00 0.00 0.00 1.40
4237 6886 7.114095 AGGTTATTTGATGGGTTACACGTTAT 58.886 34.615 0.00 0.00 0.00 1.89
4238 6887 6.474630 AGGTTATTTGATGGGTTACACGTTA 58.525 36.000 0.00 0.00 0.00 3.18
4239 6888 5.318630 AGGTTATTTGATGGGTTACACGTT 58.681 37.500 0.00 0.00 0.00 3.99
4240 6889 4.913784 AGGTTATTTGATGGGTTACACGT 58.086 39.130 0.00 0.00 0.00 4.49
4241 6890 5.890424 AAGGTTATTTGATGGGTTACACG 57.110 39.130 0.00 0.00 0.00 4.49
4242 6891 6.988522 ACAAAGGTTATTTGATGGGTTACAC 58.011 36.000 7.30 0.00 33.83 2.90
4243 6892 8.887264 ATACAAAGGTTATTTGATGGGTTACA 57.113 30.769 7.30 0.00 33.83 2.41
4246 6895 8.100164 CCAAATACAAAGGTTATTTGATGGGTT 58.900 33.333 13.82 0.00 41.28 4.11
4247 6896 7.619965 CCAAATACAAAGGTTATTTGATGGGT 58.380 34.615 13.82 0.00 41.28 4.51
4248 6897 6.538381 GCCAAATACAAAGGTTATTTGATGGG 59.462 38.462 13.82 2.23 41.28 4.00
4249 6898 7.330262 AGCCAAATACAAAGGTTATTTGATGG 58.670 34.615 13.82 9.78 41.28 3.51
4250 6899 8.776376 AAGCCAAATACAAAGGTTATTTGATG 57.224 30.769 13.82 2.98 41.28 3.07
4254 6903 9.161629 GCATTAAGCCAAATACAAAGGTTATTT 57.838 29.630 0.00 0.00 37.23 1.40
4255 6904 8.716646 GCATTAAGCCAAATACAAAGGTTATT 57.283 30.769 0.00 0.00 37.23 1.40
4272 6921 5.064198 TGTGGAATAACGTGTAGCATTAAGC 59.936 40.000 0.00 0.00 46.19 3.09
4273 6922 6.533723 TCTGTGGAATAACGTGTAGCATTAAG 59.466 38.462 0.00 0.00 0.00 1.85
4274 6923 6.399743 TCTGTGGAATAACGTGTAGCATTAA 58.600 36.000 0.00 0.00 0.00 1.40
4275 6924 5.968254 TCTGTGGAATAACGTGTAGCATTA 58.032 37.500 0.00 0.00 0.00 1.90
4276 6925 4.827692 TCTGTGGAATAACGTGTAGCATT 58.172 39.130 0.00 0.00 0.00 3.56
4277 6926 4.465632 TCTGTGGAATAACGTGTAGCAT 57.534 40.909 0.00 0.00 0.00 3.79
4278 6927 3.945981 TCTGTGGAATAACGTGTAGCA 57.054 42.857 0.00 0.00 0.00 3.49
4279 6928 3.991773 TGTTCTGTGGAATAACGTGTAGC 59.008 43.478 0.00 0.00 33.71 3.58
4280 6929 6.534059 CAATGTTCTGTGGAATAACGTGTAG 58.466 40.000 0.00 0.00 33.71 2.74
4281 6930 5.106869 GCAATGTTCTGTGGAATAACGTGTA 60.107 40.000 0.00 0.00 33.71 2.90
4282 6931 4.320202 GCAATGTTCTGTGGAATAACGTGT 60.320 41.667 0.00 0.00 33.71 4.49
4283 6932 4.083324 AGCAATGTTCTGTGGAATAACGTG 60.083 41.667 0.00 0.00 33.71 4.49
4284 6933 4.072131 AGCAATGTTCTGTGGAATAACGT 58.928 39.130 0.00 0.00 33.71 3.99
4285 6934 4.685169 AGCAATGTTCTGTGGAATAACG 57.315 40.909 0.00 0.00 33.71 3.18
4286 6935 7.989826 AGAATAGCAATGTTCTGTGGAATAAC 58.010 34.615 0.00 0.00 33.64 1.89
4287 6936 9.679661 TTAGAATAGCAATGTTCTGTGGAATAA 57.320 29.630 0.00 0.00 36.23 1.40
4288 6937 9.679661 TTTAGAATAGCAATGTTCTGTGGAATA 57.320 29.630 0.00 0.00 36.23 1.75
4289 6938 8.579850 TTTAGAATAGCAATGTTCTGTGGAAT 57.420 30.769 0.00 0.00 36.23 3.01
4290 6939 7.882791 TCTTTAGAATAGCAATGTTCTGTGGAA 59.117 33.333 0.00 0.00 36.23 3.53
4291 6940 7.394016 TCTTTAGAATAGCAATGTTCTGTGGA 58.606 34.615 0.00 0.00 36.23 4.02
4292 6941 7.335422 ACTCTTTAGAATAGCAATGTTCTGTGG 59.665 37.037 0.00 0.00 36.23 4.17
4293 6942 8.261492 ACTCTTTAGAATAGCAATGTTCTGTG 57.739 34.615 0.00 0.00 36.23 3.66
4294 6943 8.854614 AACTCTTTAGAATAGCAATGTTCTGT 57.145 30.769 0.00 0.00 36.23 3.41
4303 6952 9.174166 GGGTGAATTTAACTCTTTAGAATAGCA 57.826 33.333 0.00 0.00 0.00 3.49
4304 6953 9.174166 TGGGTGAATTTAACTCTTTAGAATAGC 57.826 33.333 0.00 0.00 0.00 2.97
4307 6956 8.971073 CCATGGGTGAATTTAACTCTTTAGAAT 58.029 33.333 2.85 0.00 0.00 2.40
4308 6957 7.947890 ACCATGGGTGAATTTAACTCTTTAGAA 59.052 33.333 18.09 0.00 32.98 2.10
4309 6958 7.466804 ACCATGGGTGAATTTAACTCTTTAGA 58.533 34.615 18.09 0.00 32.98 2.10
4310 6959 7.393234 TGACCATGGGTGAATTTAACTCTTTAG 59.607 37.037 18.09 0.00 35.25 1.85
4311 6960 7.175990 GTGACCATGGGTGAATTTAACTCTTTA 59.824 37.037 18.09 0.00 35.25 1.85
4350 6999 5.105567 TCCAGTGACCAAAGTGAACTTTA 57.894 39.130 8.06 0.00 43.72 1.85
4375 7024 1.069668 ACCGTAATCTGGGTATTCCGC 59.930 52.381 0.00 0.00 38.76 5.54
4398 7047 8.028540 TGCGCTATTAACTAATGTGATATTGG 57.971 34.615 9.73 0.00 0.00 3.16
4399 7048 9.533983 CTTGCGCTATTAACTAATGTGATATTG 57.466 33.333 9.73 0.00 0.00 1.90
4405 7054 6.185399 GTGACTTGCGCTATTAACTAATGTG 58.815 40.000 9.73 0.00 0.00 3.21
4424 7073 2.509336 GCAGCATACGCGGTGACT 60.509 61.111 12.47 7.85 45.49 3.41
4493 7142 1.792118 GAAAAACCCGCCTCGCTTGT 61.792 55.000 0.00 0.00 0.00 3.16
4507 7156 3.874543 TCAACTCGCTAGTGCAAGAAAAA 59.125 39.130 0.00 0.00 39.64 1.94
4512 7161 3.425359 CCAAATCAACTCGCTAGTGCAAG 60.425 47.826 0.00 0.00 39.64 4.01
4520 7170 4.743018 CCCCCAAATCAACTCGCT 57.257 55.556 0.00 0.00 0.00 4.93
4576 7229 0.619255 TAGGGATTTGGAGGACGGCA 60.619 55.000 0.00 0.00 0.00 5.69
4599 7255 0.808453 CGGCGGCGAAAGAGGAATAA 60.808 55.000 29.19 0.00 0.00 1.40
4767 7442 4.108299 ATGAATGGACCGCCGCCA 62.108 61.111 0.00 0.00 40.24 5.69
4804 7482 4.344865 CAACCACACCCCCTCCCG 62.345 72.222 0.00 0.00 0.00 5.14
4805 7483 4.678743 GCAACCACACCCCCTCCC 62.679 72.222 0.00 0.00 0.00 4.30
4806 7484 4.678743 GGCAACCACACCCCCTCC 62.679 72.222 0.00 0.00 0.00 4.30
4807 7485 3.580319 AGGCAACCACACCCCCTC 61.580 66.667 0.00 0.00 37.17 4.30
4808 7486 3.902112 CAGGCAACCACACCCCCT 61.902 66.667 0.00 0.00 37.17 4.79
4823 7501 2.095567 CGGAAACATGCTTCTTCACCAG 60.096 50.000 8.66 0.00 0.00 4.00
4898 7576 4.750098 TCGAAGAACAAATGTCAGAGAACC 59.250 41.667 0.00 0.00 0.00 3.62
4965 7668 7.713507 CCAGAAATTGCATCCATTATGTCAAAT 59.286 33.333 0.00 0.00 37.93 2.32
4973 7676 5.361427 CAATGCCAGAAATTGCATCCATTA 58.639 37.500 1.85 0.00 46.97 1.90
5047 7750 3.450578 CCAATTGCATCCACAGCATTAC 58.549 45.455 0.00 0.00 42.33 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.