Multiple sequence alignment - TraesCS1B01G301400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G301400 | chr1B | 100.000 | 4214 | 0 | 0 | 1 | 4214 | 522006438 | 522010651 | 0.000000e+00 | 7782.0 |
1 | TraesCS1B01G301400 | chr1A | 91.885 | 2514 | 131 | 41 | 810 | 3267 | 487725284 | 487727780 | 0.000000e+00 | 3445.0 |
2 | TraesCS1B01G301400 | chr1A | 84.868 | 760 | 55 | 32 | 1 | 734 | 487695196 | 487695921 | 0.000000e+00 | 712.0 |
3 | TraesCS1B01G301400 | chr1A | 91.346 | 520 | 30 | 8 | 3296 | 3814 | 487728036 | 487728541 | 0.000000e+00 | 697.0 |
4 | TraesCS1B01G301400 | chr1A | 94.277 | 332 | 15 | 3 | 3885 | 4213 | 487728534 | 487728864 | 4.860000e-139 | 505.0 |
5 | TraesCS1B01G301400 | chr1D | 94.538 | 1483 | 55 | 13 | 2740 | 4214 | 388637344 | 388638808 | 0.000000e+00 | 2266.0 |
6 | TraesCS1B01G301400 | chr1D | 93.123 | 1076 | 46 | 15 | 1544 | 2606 | 388636288 | 388637348 | 0.000000e+00 | 1552.0 |
7 | TraesCS1B01G301400 | chr1D | 91.017 | 757 | 42 | 11 | 812 | 1554 | 388635524 | 388636268 | 0.000000e+00 | 998.0 |
8 | TraesCS1B01G301400 | chr1D | 91.310 | 725 | 35 | 12 | 8 | 708 | 388629196 | 388629916 | 0.000000e+00 | 965.0 |
9 | TraesCS1B01G301400 | chr1D | 94.737 | 38 | 0 | 2 | 765 | 800 | 388635503 | 388635540 | 1.640000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G301400 | chr1B | 522006438 | 522010651 | 4213 | False | 7782.0 | 7782 | 100.000000 | 1 | 4214 | 1 | chr1B.!!$F1 | 4213 |
1 | TraesCS1B01G301400 | chr1A | 487725284 | 487728864 | 3580 | False | 1549.0 | 3445 | 92.502667 | 810 | 4213 | 3 | chr1A.!!$F2 | 3403 |
2 | TraesCS1B01G301400 | chr1A | 487695196 | 487695921 | 725 | False | 712.0 | 712 | 84.868000 | 1 | 734 | 1 | chr1A.!!$F1 | 733 |
3 | TraesCS1B01G301400 | chr1D | 388635503 | 388638808 | 3305 | False | 1218.6 | 2266 | 93.353750 | 765 | 4214 | 4 | chr1D.!!$F2 | 3449 |
4 | TraesCS1B01G301400 | chr1D | 388629196 | 388629916 | 720 | False | 965.0 | 965 | 91.310000 | 8 | 708 | 1 | chr1D.!!$F1 | 700 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
539 | 540 | 0.179108 | GGTTCGCGCCATAGAAGACT | 60.179 | 55.0 | 0.0 | 0.0 | 0.00 | 3.24 | F |
857 | 885 | 0.521735 | GGCCGTCCTGTCACAATTTC | 59.478 | 55.0 | 0.0 | 0.0 | 0.00 | 2.17 | F |
2242 | 2325 | 0.673644 | CTGAAGTGCGACCCCGATTT | 60.674 | 55.0 | 0.0 | 0.0 | 38.22 | 2.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2223 | 2306 | 0.673644 | AAATCGGGGTCGCACTTCAG | 60.674 | 55.0 | 0.0 | 0.00 | 36.13 | 3.02 | R |
2594 | 2697 | 0.869880 | GCAAACGGTCCAGTGCAAAC | 60.870 | 55.0 | 0.0 | 0.00 | 36.97 | 2.93 | R |
3508 | 3844 | 0.595095 | CCTGACCAAGCTTTGCAGAC | 59.405 | 55.0 | 17.2 | 1.29 | 0.00 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 2.969628 | ATTCTTCGTCGCTGATCCTT | 57.030 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
41 | 42 | 2.705127 | GCTGATCCTTTCCCTGATCTCT | 59.295 | 50.000 | 0.00 | 0.00 | 38.53 | 3.10 |
72 | 73 | 1.820481 | GAGAGCGGCTCGAGGTACT | 60.820 | 63.158 | 23.15 | 4.83 | 35.63 | 2.73 |
75 | 76 | 3.450115 | GCGGCTCGAGGTACTGGT | 61.450 | 66.667 | 15.58 | 0.00 | 41.55 | 4.00 |
77 | 78 | 2.893398 | GGCTCGAGGTACTGGTGG | 59.107 | 66.667 | 15.58 | 0.00 | 41.55 | 4.61 |
150 | 151 | 1.069668 | GGTACCTGTGTTCCTCGTTGT | 59.930 | 52.381 | 4.06 | 0.00 | 0.00 | 3.32 |
268 | 269 | 2.885861 | GACGTGGTCGAGCTCCAT | 59.114 | 61.111 | 16.64 | 2.00 | 40.62 | 3.41 |
276 | 277 | 3.790437 | CGAGCTCCATGGCCCTGT | 61.790 | 66.667 | 6.96 | 0.00 | 0.00 | 4.00 |
278 | 279 | 3.412624 | GAGCTCCATGGCCCTGTCC | 62.413 | 68.421 | 6.96 | 0.00 | 0.00 | 4.02 |
289 | 290 | 1.913762 | CCCTGTCCACGAGGGTCTT | 60.914 | 63.158 | 0.00 | 0.00 | 44.85 | 3.01 |
503 | 504 | 0.839946 | ACCACTTGAGCTTCACCACT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
509 | 510 | 1.222113 | GAGCTTCACCACTAGGGGC | 59.778 | 63.158 | 12.22 | 0.00 | 42.91 | 5.80 |
539 | 540 | 0.179108 | GGTTCGCGCCATAGAAGACT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
586 | 587 | 2.556840 | ATCGTCCCCGGTCGGTTCTA | 62.557 | 60.000 | 8.67 | 0.00 | 33.95 | 2.10 |
593 | 594 | 2.960129 | GGTCGGTTCTATGGCGCG | 60.960 | 66.667 | 0.00 | 0.00 | 0.00 | 6.86 |
667 | 695 | 8.202137 | TGGTAGACTATTTATAGACAAGCCAAC | 58.798 | 37.037 | 3.85 | 0.00 | 34.50 | 3.77 |
695 | 723 | 1.542547 | GGAGCTTTTGAACCGACCTCA | 60.543 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
724 | 752 | 1.600107 | GACGGCTGTGGGACCAATA | 59.400 | 57.895 | 0.80 | 0.00 | 0.00 | 1.90 |
734 | 762 | 3.270877 | GTGGGACCAATAGCTGTTACTG | 58.729 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
735 | 763 | 2.910319 | TGGGACCAATAGCTGTTACTGT | 59.090 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
736 | 764 | 4.081309 | GTGGGACCAATAGCTGTTACTGTA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
737 | 765 | 4.719773 | TGGGACCAATAGCTGTTACTGTAT | 59.280 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
738 | 766 | 5.190925 | TGGGACCAATAGCTGTTACTGTATT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
739 | 767 | 6.120220 | GGGACCAATAGCTGTTACTGTATTT | 58.880 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
740 | 768 | 7.092802 | TGGGACCAATAGCTGTTACTGTATTTA | 60.093 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
741 | 769 | 7.937394 | GGGACCAATAGCTGTTACTGTATTTAT | 59.063 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
742 | 770 | 9.991906 | GGACCAATAGCTGTTACTGTATTTATA | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
744 | 772 | 9.490379 | ACCAATAGCTGTTACTGTATTTATAGC | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
745 | 773 | 9.489084 | CCAATAGCTGTTACTGTATTTATAGCA | 57.511 | 33.333 | 0.00 | 0.00 | 32.64 | 3.49 |
800 | 828 | 4.966168 | TGGACTAATATTACTGGGCTGTCA | 59.034 | 41.667 | 9.61 | 0.00 | 0.00 | 3.58 |
801 | 829 | 5.070446 | TGGACTAATATTACTGGGCTGTCAG | 59.930 | 44.000 | 0.00 | 0.00 | 40.40 | 3.51 |
802 | 830 | 5.511545 | GGACTAATATTACTGGGCTGTCAGG | 60.512 | 48.000 | 1.14 | 0.00 | 38.98 | 3.86 |
803 | 831 | 4.969359 | ACTAATATTACTGGGCTGTCAGGT | 59.031 | 41.667 | 1.14 | 0.00 | 38.98 | 4.00 |
804 | 832 | 4.862641 | AATATTACTGGGCTGTCAGGTT | 57.137 | 40.909 | 1.14 | 0.00 | 38.98 | 3.50 |
805 | 833 | 2.789409 | ATTACTGGGCTGTCAGGTTC | 57.211 | 50.000 | 1.14 | 0.00 | 38.98 | 3.62 |
806 | 834 | 1.429930 | TTACTGGGCTGTCAGGTTCA | 58.570 | 50.000 | 1.14 | 0.00 | 38.98 | 3.18 |
807 | 835 | 1.429930 | TACTGGGCTGTCAGGTTCAA | 58.570 | 50.000 | 1.14 | 0.00 | 38.98 | 2.69 |
808 | 836 | 0.550914 | ACTGGGCTGTCAGGTTCAAA | 59.449 | 50.000 | 1.14 | 0.00 | 38.98 | 2.69 |
809 | 837 | 1.064017 | ACTGGGCTGTCAGGTTCAAAA | 60.064 | 47.619 | 1.14 | 0.00 | 38.98 | 2.44 |
810 | 838 | 2.031120 | CTGGGCTGTCAGGTTCAAAAA | 58.969 | 47.619 | 1.14 | 0.00 | 0.00 | 1.94 |
832 | 860 | 1.901591 | AATCACTGGGCTGTCTTGTG | 58.098 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
854 | 882 | 2.351276 | GGGCCGTCCTGTCACAAT | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 2.71 |
857 | 885 | 0.521735 | GGCCGTCCTGTCACAATTTC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
858 | 886 | 1.234821 | GCCGTCCTGTCACAATTTCA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
859 | 887 | 1.069227 | GCCGTCCTGTCACAATTTCAC | 60.069 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
861 | 889 | 1.194547 | CGTCCTGTCACAATTTCACCG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
862 | 890 | 2.218603 | GTCCTGTCACAATTTCACCGT | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 4.83 |
984 | 1013 | 3.432326 | GCATTATCTCATATCCCCCGTCC | 60.432 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
1026 | 1055 | 1.451747 | GGCGACCGAGGTCTACTCT | 60.452 | 63.158 | 18.85 | 0.00 | 44.33 | 3.24 |
1112 | 1141 | 0.906756 | CTCCTGCAGGTCCTTCTCCA | 60.907 | 60.000 | 31.58 | 8.74 | 36.34 | 3.86 |
1185 | 1214 | 4.787280 | CGCCACCCCCTCCTCTCT | 62.787 | 72.222 | 0.00 | 0.00 | 0.00 | 3.10 |
1321 | 1351 | 5.105752 | GCGAAAGGATATAGTCTGCTATGG | 58.894 | 45.833 | 0.00 | 0.00 | 38.31 | 2.74 |
1324 | 1362 | 7.577046 | GCGAAAGGATATAGTCTGCTATGGTAA | 60.577 | 40.741 | 0.00 | 0.00 | 38.31 | 2.85 |
1352 | 1390 | 2.086094 | CGTGGTGGTTGGGGTTTATAC | 58.914 | 52.381 | 0.00 | 0.00 | 0.00 | 1.47 |
1402 | 1441 | 2.815478 | CTGCGGTTCTAGAACTGGATC | 58.185 | 52.381 | 34.69 | 23.14 | 44.95 | 3.36 |
1440 | 1487 | 1.464997 | GTGTCGAGCAAGGTTCATTCC | 59.535 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1471 | 1518 | 8.985315 | TGATTTCTTAGGCATGATTAACAGAT | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
1512 | 1559 | 9.595823 | TCTTAATTAAGAAGCATGGTACTGTAC | 57.404 | 33.333 | 22.73 | 9.46 | 39.22 | 2.90 |
1513 | 1560 | 9.378551 | CTTAATTAAGAAGCATGGTACTGTACA | 57.621 | 33.333 | 18.69 | 6.45 | 35.33 | 2.90 |
1517 | 1564 | 5.326200 | AGAAGCATGGTACTGTACACTAC | 57.674 | 43.478 | 18.79 | 6.29 | 0.00 | 2.73 |
1518 | 1565 | 4.770531 | AGAAGCATGGTACTGTACACTACA | 59.229 | 41.667 | 18.79 | 8.41 | 37.13 | 2.74 |
1559 | 1639 | 8.495949 | TGTTGTTTTCGATATCAAGTCTTCTTC | 58.504 | 33.333 | 3.12 | 0.00 | 0.00 | 2.87 |
1658 | 1741 | 3.400505 | TTAGTCTGTGCATACGAGTCG | 57.599 | 47.619 | 11.85 | 11.85 | 0.00 | 4.18 |
1674 | 1757 | 2.579787 | CGTCGAGCCTTACTGCCG | 60.580 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1760 | 1843 | 2.056223 | GGCAAGCATGTGGCCATCT | 61.056 | 57.895 | 9.72 | 0.72 | 46.92 | 2.90 |
1769 | 1852 | 1.388133 | GTGGCCATCTTTTCCCCCT | 59.612 | 57.895 | 9.72 | 0.00 | 0.00 | 4.79 |
1786 | 1869 | 5.393866 | TCCCCCTTTTTCCTATGATATTGC | 58.606 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
1793 | 1876 | 9.736023 | CCTTTTTCCTATGATATTGCTGTTAAC | 57.264 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
1813 | 1896 | 8.258007 | TGTTAACTTCTCACTTTCTCAAGAAGA | 58.742 | 33.333 | 15.68 | 0.02 | 44.81 | 2.87 |
1889 | 1972 | 5.491982 | AGGGTGAATCATGTAACTGTCTTC | 58.508 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1904 | 1987 | 1.068055 | GTCTTCGAGCGTCCTGGTTTA | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
1907 | 1990 | 0.675083 | TCGAGCGTCCTGGTTTACAA | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1908 | 1991 | 0.788391 | CGAGCGTCCTGGTTTACAAC | 59.212 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1909 | 1992 | 1.604693 | CGAGCGTCCTGGTTTACAACT | 60.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
1910 | 1993 | 2.490991 | GAGCGTCCTGGTTTACAACTT | 58.509 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
1911 | 1994 | 3.656559 | GAGCGTCCTGGTTTACAACTTA | 58.343 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1912 | 1995 | 3.396560 | AGCGTCCTGGTTTACAACTTAC | 58.603 | 45.455 | 0.00 | 0.00 | 0.00 | 2.34 |
1913 | 1996 | 3.132925 | GCGTCCTGGTTTACAACTTACA | 58.867 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1914 | 1997 | 3.560896 | GCGTCCTGGTTTACAACTTACAA | 59.439 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
1934 | 2017 | 9.567848 | CTTACAAGAGTTTTTGCAGAAAACTAA | 57.432 | 29.630 | 25.80 | 18.99 | 46.81 | 2.24 |
1983 | 2066 | 2.031870 | GCTGGTTTGGAAGGTTTGTCT | 58.968 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1987 | 2070 | 3.835395 | TGGTTTGGAAGGTTTGTCTTGTT | 59.165 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1997 | 2080 | 5.894807 | AGGTTTGTCTTGTTGAACATTCAG | 58.105 | 37.500 | 0.00 | 0.00 | 38.61 | 3.02 |
2036 | 2119 | 4.551671 | AGCCCTGTATCTAACTGATCTGT | 58.448 | 43.478 | 0.00 | 0.00 | 36.65 | 3.41 |
2183 | 2266 | 7.094377 | GCTGTAAATAATGGACTCTTTGTTCCA | 60.094 | 37.037 | 0.00 | 0.00 | 36.61 | 3.53 |
2223 | 2306 | 1.909376 | TCTCGTGCTCGCTGAAATAC | 58.091 | 50.000 | 2.69 | 0.00 | 36.96 | 1.89 |
2237 | 2320 | 2.007608 | GAAATACTGAAGTGCGACCCC | 58.992 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
2242 | 2325 | 0.673644 | CTGAAGTGCGACCCCGATTT | 60.674 | 55.000 | 0.00 | 0.00 | 38.22 | 2.17 |
2249 | 2332 | 4.263435 | AGTGCGACCCCGATTTATTTTAA | 58.737 | 39.130 | 0.00 | 0.00 | 38.22 | 1.52 |
2291 | 2374 | 9.379791 | AGTAGTAACTTAAATATCACAAGTGCC | 57.620 | 33.333 | 0.00 | 0.00 | 32.96 | 5.01 |
2384 | 2475 | 6.850752 | TGGTGTCATCTACAACTTCTATCA | 57.149 | 37.500 | 0.00 | 0.00 | 46.70 | 2.15 |
2386 | 2477 | 7.676004 | TGGTGTCATCTACAACTTCTATCAAA | 58.324 | 34.615 | 0.00 | 0.00 | 46.70 | 2.69 |
2533 | 2635 | 2.694616 | AATGCCACCAAGGGTTAGTT | 57.305 | 45.000 | 0.00 | 0.00 | 38.09 | 2.24 |
2594 | 2697 | 0.469917 | AACCAGATCTATGGGGCACG | 59.530 | 55.000 | 6.01 | 0.00 | 45.25 | 5.34 |
2612 | 2715 | 0.591236 | CGTTTGCACTGGACCGTTTG | 60.591 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2625 | 2728 | 0.249405 | CCGTTTGCCAACACAAGCAT | 60.249 | 50.000 | 1.21 | 0.00 | 39.11 | 3.79 |
2683 | 2786 | 6.135290 | TGCCTGATGTTATCTTGTTTATGC | 57.865 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
2730 | 2834 | 1.468520 | CCGTATGTTCCTGCCAACTTG | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2732 | 2836 | 2.095768 | CGTATGTTCCTGCCAACTTGTG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2737 | 2841 | 2.884639 | GTTCCTGCCAACTTGTGTATGT | 59.115 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
2757 | 2861 | 4.556233 | TGTTGTTGATCCTAGTCTGTTCG | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
2759 | 2863 | 4.436242 | TGTTGATCCTAGTCTGTTCGTC | 57.564 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
2920 | 3029 | 6.368791 | TGCTTGTCGATAACAATCCATATAGC | 59.631 | 38.462 | 0.00 | 0.00 | 46.53 | 2.97 |
2935 | 3044 | 4.142359 | CCATATAGCTTCCTACTACAGCCG | 60.142 | 50.000 | 0.00 | 0.00 | 33.73 | 5.52 |
2938 | 3047 | 2.731572 | AGCTTCCTACTACAGCCGTTA | 58.268 | 47.619 | 0.00 | 0.00 | 33.73 | 3.18 |
3023 | 3132 | 6.855914 | GCACTGTTGATAAAATCGTTCTTTGA | 59.144 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
3135 | 3244 | 5.095145 | TCTCTCTCCAAAATGATGTGAGG | 57.905 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3206 | 3315 | 2.102578 | GATCCCACAAATTGACCAGGG | 58.897 | 52.381 | 0.00 | 5.68 | 37.65 | 4.45 |
3278 | 3387 | 3.632855 | GCTCAAAAGCTAGCTGTTGTT | 57.367 | 42.857 | 35.69 | 18.38 | 45.55 | 2.83 |
3279 | 3388 | 3.559504 | GCTCAAAAGCTAGCTGTTGTTC | 58.440 | 45.455 | 35.69 | 26.70 | 45.55 | 3.18 |
3280 | 3389 | 3.610349 | GCTCAAAAGCTAGCTGTTGTTCC | 60.610 | 47.826 | 35.69 | 24.42 | 45.55 | 3.62 |
3286 | 3395 | 1.677217 | GCTAGCTGTTGTTCCTCTGGG | 60.677 | 57.143 | 7.70 | 0.00 | 0.00 | 4.45 |
3357 | 3693 | 5.570205 | TTGTTCAACATGGAGTAACCCTA | 57.430 | 39.130 | 0.00 | 0.00 | 38.00 | 3.53 |
3379 | 3715 | 3.190874 | CCCGCAGAGAAGAAAGATGTAC | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3381 | 3717 | 3.862267 | CCGCAGAGAAGAAAGATGTACTG | 59.138 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
3384 | 3720 | 6.093404 | CGCAGAGAAGAAAGATGTACTGTAA | 58.907 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3385 | 3721 | 6.754209 | CGCAGAGAAGAAAGATGTACTGTAAT | 59.246 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
3386 | 3722 | 7.915923 | CGCAGAGAAGAAAGATGTACTGTAATA | 59.084 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3387 | 3723 | 9.757227 | GCAGAGAAGAAAGATGTACTGTAATAT | 57.243 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3403 | 3739 | 5.336945 | TGTAATATCCTAGCTCTGGCAGAT | 58.663 | 41.667 | 19.11 | 6.77 | 41.70 | 2.90 |
3405 | 3741 | 5.839517 | AATATCCTAGCTCTGGCAGATTT | 57.160 | 39.130 | 19.11 | 11.61 | 41.70 | 2.17 |
3408 | 3744 | 3.878778 | TCCTAGCTCTGGCAGATTTTTC | 58.121 | 45.455 | 19.11 | 5.32 | 41.70 | 2.29 |
3422 | 3758 | 7.867403 | TGGCAGATTTTTCTTTCTGTAATGAAC | 59.133 | 33.333 | 2.30 | 0.00 | 41.16 | 3.18 |
3496 | 3832 | 3.929094 | TCCTGATGGTTTTACGTGTACC | 58.071 | 45.455 | 0.00 | 3.30 | 34.23 | 3.34 |
3508 | 3844 | 1.897802 | ACGTGTACCAGGGAGTAAAGG | 59.102 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
3519 | 3855 | 2.553247 | GGGAGTAAAGGTCTGCAAAGCT | 60.553 | 50.000 | 0.00 | 0.00 | 0.00 | 3.74 |
3531 | 3867 | 0.032540 | GCAAAGCTTGGTCAGGGTTG | 59.967 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3613 | 3949 | 5.507985 | GCTTGTTGAAGTTACAATGCCTCTT | 60.508 | 40.000 | 0.00 | 0.00 | 35.18 | 2.85 |
3766 | 4102 | 2.258286 | GCACCGCGCCAAAGAAAT | 59.742 | 55.556 | 0.00 | 0.00 | 32.94 | 2.17 |
3767 | 4103 | 1.801512 | GCACCGCGCCAAAGAAATC | 60.802 | 57.895 | 0.00 | 0.00 | 32.94 | 2.17 |
3768 | 4104 | 1.511887 | CACCGCGCCAAAGAAATCG | 60.512 | 57.895 | 0.00 | 0.00 | 0.00 | 3.34 |
3855 | 4191 | 9.699410 | TTGATTAATTAGGTGAAATGAGGATGT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
3957 | 4294 | 2.238521 | TCCAAACAATCTTCCAGTGCC | 58.761 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
3966 | 4303 | 5.188434 | CAATCTTCCAGTGCCAAAGATAGA | 58.812 | 41.667 | 11.67 | 0.00 | 38.47 | 1.98 |
3984 | 4321 | 0.107459 | GAGCCCAGGACTGCCTAAAG | 60.107 | 60.000 | 0.00 | 0.00 | 44.80 | 1.85 |
4138 | 4480 | 0.322816 | CCTAGCAAAGCAGGCCAAGA | 60.323 | 55.000 | 5.01 | 0.00 | 0.00 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 0.041238 | ACCACCGAGAGATCAGGGAA | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
41 | 42 | 2.927580 | GCTCTCCAACGACCACCGA | 61.928 | 63.158 | 0.00 | 0.00 | 41.76 | 4.69 |
150 | 151 | 4.563630 | CGTCGTCGGGTTCATCAA | 57.436 | 55.556 | 0.00 | 0.00 | 0.00 | 2.57 |
276 | 277 | 3.379445 | GGCGAAGACCCTCGTGGA | 61.379 | 66.667 | 4.76 | 0.00 | 40.99 | 4.02 |
278 | 279 | 4.052229 | ACGGCGAAGACCCTCGTG | 62.052 | 66.667 | 16.62 | 0.00 | 40.99 | 4.35 |
397 | 398 | 4.988716 | TCGACTGGGCCGTGGAGT | 62.989 | 66.667 | 5.76 | 0.00 | 0.00 | 3.85 |
443 | 444 | 2.183046 | GAGACGGAGGAGCAGTGC | 59.817 | 66.667 | 7.13 | 7.13 | 0.00 | 4.40 |
530 | 531 | 1.332997 | CCGCGGTTCGTAGTCTTCTAT | 59.667 | 52.381 | 19.50 | 0.00 | 36.19 | 1.98 |
603 | 604 | 2.610859 | AATCCCAGTCCCACCGCT | 60.611 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
613 | 614 | 2.350458 | CCGCAAACCCCAATCCCAG | 61.350 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
651 | 673 | 2.356330 | CGGGGGTTGGCTTGTCTATAAA | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
708 | 736 | 1.819632 | GCTATTGGTCCCACAGCCG | 60.820 | 63.158 | 7.56 | 0.00 | 0.00 | 5.52 |
751 | 779 | 8.621286 | ACTTGTGTCTAAAATTGTCTCGAAAAT | 58.379 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
752 | 780 | 7.908082 | CACTTGTGTCTAAAATTGTCTCGAAAA | 59.092 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
753 | 781 | 7.406553 | CACTTGTGTCTAAAATTGTCTCGAAA | 58.593 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
754 | 782 | 6.018262 | CCACTTGTGTCTAAAATTGTCTCGAA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
755 | 783 | 5.465390 | CCACTTGTGTCTAAAATTGTCTCGA | 59.535 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
756 | 784 | 5.465390 | TCCACTTGTGTCTAAAATTGTCTCG | 59.535 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
757 | 785 | 6.483640 | AGTCCACTTGTGTCTAAAATTGTCTC | 59.516 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
758 | 786 | 6.357367 | AGTCCACTTGTGTCTAAAATTGTCT | 58.643 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
759 | 787 | 6.619801 | AGTCCACTTGTGTCTAAAATTGTC | 57.380 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
760 | 788 | 8.691661 | ATTAGTCCACTTGTGTCTAAAATTGT | 57.308 | 30.769 | 14.37 | 0.00 | 0.00 | 2.71 |
767 | 795 | 8.692710 | CCAGTAATATTAGTCCACTTGTGTCTA | 58.307 | 37.037 | 0.00 | 0.63 | 0.00 | 2.59 |
768 | 796 | 7.364762 | CCCAGTAATATTAGTCCACTTGTGTCT | 60.365 | 40.741 | 0.00 | 1.48 | 0.00 | 3.41 |
769 | 797 | 6.761714 | CCCAGTAATATTAGTCCACTTGTGTC | 59.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
810 | 838 | 3.068590 | CACAAGACAGCCCAGTGATTTTT | 59.931 | 43.478 | 0.00 | 0.00 | 32.14 | 1.94 |
811 | 839 | 2.624838 | CACAAGACAGCCCAGTGATTTT | 59.375 | 45.455 | 0.00 | 0.00 | 32.14 | 1.82 |
812 | 840 | 2.158623 | TCACAAGACAGCCCAGTGATTT | 60.159 | 45.455 | 0.00 | 0.00 | 34.59 | 2.17 |
813 | 841 | 1.421268 | TCACAAGACAGCCCAGTGATT | 59.579 | 47.619 | 0.00 | 0.00 | 34.59 | 2.57 |
814 | 842 | 1.059098 | TCACAAGACAGCCCAGTGAT | 58.941 | 50.000 | 0.00 | 0.00 | 34.59 | 3.06 |
815 | 843 | 0.836606 | TTCACAAGACAGCCCAGTGA | 59.163 | 50.000 | 0.00 | 0.00 | 37.43 | 3.41 |
816 | 844 | 0.947244 | GTTCACAAGACAGCCCAGTG | 59.053 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
817 | 845 | 0.839946 | AGTTCACAAGACAGCCCAGT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
818 | 846 | 1.233019 | CAGTTCACAAGACAGCCCAG | 58.767 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
832 | 860 | 2.047179 | GACAGGACGGCCCAGTTC | 60.047 | 66.667 | 1.76 | 0.00 | 34.49 | 3.01 |
854 | 882 | 1.005394 | GCGAGGAGGAACGGTGAAA | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
857 | 885 | 4.452733 | GGGCGAGGAGGAACGGTG | 62.453 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
859 | 887 | 4.452733 | GTGGGCGAGGAGGAACGG | 62.453 | 72.222 | 0.00 | 0.00 | 0.00 | 4.44 |
861 | 889 | 3.379445 | TCGTGGGCGAGGAGGAAC | 61.379 | 66.667 | 0.00 | 0.00 | 42.81 | 3.62 |
952 | 981 | 2.204463 | TGAGATAATGCTGGGGTGGAA | 58.796 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
1040 | 1069 | 4.172512 | CCTGCTCCCGATGCTGCT | 62.173 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
1080 | 1109 | 4.722535 | AGGAGGAGCCCGAGCCAA | 62.723 | 66.667 | 0.00 | 0.00 | 41.25 | 4.52 |
1201 | 1230 | 4.021925 | GGGGAGCTGCACGAAGGT | 62.022 | 66.667 | 7.79 | 0.00 | 0.00 | 3.50 |
1352 | 1390 | 2.412089 | GCTGCAGTTAACCACTAACTCG | 59.588 | 50.000 | 16.64 | 0.00 | 46.01 | 4.18 |
1385 | 1424 | 1.405821 | AGCGATCCAGTTCTAGAACCG | 59.594 | 52.381 | 28.05 | 23.69 | 42.06 | 4.44 |
1402 | 1441 | 5.868687 | GACACTCCTGTCTGCAGATAGCG | 62.869 | 56.522 | 29.46 | 23.83 | 45.28 | 4.26 |
1440 | 1487 | 7.664082 | AATCATGCCTAAGAAATCATACTCG | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1497 | 1544 | 5.477607 | TTGTAGTGTACAGTACCATGCTT | 57.522 | 39.130 | 29.45 | 0.00 | 40.24 | 3.91 |
1500 | 1547 | 7.667043 | AACATTTGTAGTGTACAGTACCATG | 57.333 | 36.000 | 29.45 | 28.93 | 40.24 | 3.66 |
1533 | 1580 | 7.962964 | AGAAGACTTGATATCGAAAACAACA | 57.037 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1542 | 1589 | 4.921547 | TCACCGAAGAAGACTTGATATCG | 58.078 | 43.478 | 0.00 | 0.00 | 36.39 | 2.92 |
1559 | 1639 | 1.001406 | AGTCAGAAAGGAAGCTCACCG | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
1658 | 1741 | 2.886124 | GCGGCAGTAAGGCTCGAC | 60.886 | 66.667 | 0.00 | 0.00 | 41.46 | 4.20 |
1704 | 1787 | 2.230508 | ACTCCATGTCAAAGCAATGCAG | 59.769 | 45.455 | 8.35 | 0.00 | 0.00 | 4.41 |
1760 | 1843 | 7.147567 | GCAATATCATAGGAAAAAGGGGGAAAA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1786 | 1869 | 8.425577 | TTCTTGAGAAAGTGAGAAGTTAACAG | 57.574 | 34.615 | 8.61 | 0.00 | 0.00 | 3.16 |
1889 | 1972 | 0.788391 | GTTGTAAACCAGGACGCTCG | 59.212 | 55.000 | 0.00 | 0.00 | 42.21 | 5.03 |
1904 | 1987 | 6.509418 | TCTGCAAAAACTCTTGTAAGTTGT | 57.491 | 33.333 | 0.00 | 0.00 | 39.40 | 3.32 |
1907 | 1990 | 7.602753 | AGTTTTCTGCAAAAACTCTTGTAAGT | 58.397 | 30.769 | 22.81 | 8.06 | 44.50 | 2.24 |
1908 | 1991 | 9.567848 | TTAGTTTTCTGCAAAAACTCTTGTAAG | 57.432 | 29.630 | 27.66 | 0.00 | 44.50 | 2.34 |
1910 | 1993 | 9.515020 | CATTAGTTTTCTGCAAAAACTCTTGTA | 57.485 | 29.630 | 27.66 | 16.14 | 44.50 | 2.41 |
1911 | 1994 | 8.250332 | TCATTAGTTTTCTGCAAAAACTCTTGT | 58.750 | 29.630 | 27.66 | 16.79 | 44.50 | 3.16 |
1912 | 1995 | 8.633075 | TCATTAGTTTTCTGCAAAAACTCTTG | 57.367 | 30.769 | 27.66 | 24.92 | 44.50 | 3.02 |
1913 | 1996 | 9.822185 | ATTCATTAGTTTTCTGCAAAAACTCTT | 57.178 | 25.926 | 27.66 | 19.24 | 44.50 | 2.85 |
1914 | 1997 | 9.822185 | AATTCATTAGTTTTCTGCAAAAACTCT | 57.178 | 25.926 | 27.66 | 19.37 | 44.50 | 3.24 |
1934 | 2017 | 7.933577 | TGAAGAGTATAAGATCGGCAAATTCAT | 59.066 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1983 | 2066 | 5.048504 | GGAGAGCAATCTGAATGTTCAACAA | 60.049 | 40.000 | 11.37 | 0.00 | 36.64 | 2.83 |
1987 | 2070 | 4.290711 | TGGAGAGCAATCTGAATGTTCA | 57.709 | 40.909 | 11.37 | 0.00 | 35.57 | 3.18 |
2036 | 2119 | 0.992970 | TGCATATCCTGGGGGAAGCA | 60.993 | 55.000 | 0.00 | 0.00 | 45.78 | 3.91 |
2223 | 2306 | 0.673644 | AAATCGGGGTCGCACTTCAG | 60.674 | 55.000 | 0.00 | 0.00 | 36.13 | 3.02 |
2237 | 2320 | 6.405278 | AAGGCCTCCCATTAAAATAAATCG | 57.595 | 37.500 | 5.23 | 0.00 | 0.00 | 3.34 |
2242 | 2325 | 4.357325 | TGCAAAGGCCTCCCATTAAAATA | 58.643 | 39.130 | 5.23 | 0.00 | 40.13 | 1.40 |
2249 | 2332 | 4.447734 | CTTGCAAAGGCCTCCCAT | 57.552 | 55.556 | 5.23 | 0.00 | 41.27 | 4.00 |
2291 | 2374 | 5.119588 | CCGTGTTATTGTGTACCTTGTACAG | 59.880 | 44.000 | 7.30 | 0.00 | 0.00 | 2.74 |
2306 | 2397 | 2.208132 | TGGAATGCCACCGTGTTATT | 57.792 | 45.000 | 0.00 | 0.00 | 39.92 | 1.40 |
2341 | 2432 | 7.474190 | ACACCAAATCAAAAGAAATGCAAAAG | 58.526 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
2386 | 2477 | 9.153721 | CCAATTTGCACAACATGATAATAAAGT | 57.846 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2396 | 2495 | 3.389925 | ACCTCCAATTTGCACAACATG | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
2533 | 2635 | 5.888982 | AGAAGAAAACTCTACCAACCAGA | 57.111 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
2567 | 2669 | 5.068636 | CCCCATAGATCTGGTTTCAATCTG | 58.931 | 45.833 | 5.18 | 0.00 | 34.23 | 2.90 |
2594 | 2697 | 0.869880 | GCAAACGGTCCAGTGCAAAC | 60.870 | 55.000 | 0.00 | 0.00 | 36.97 | 2.93 |
2607 | 2710 | 1.522258 | GAATGCTTGTGTTGGCAAACG | 59.478 | 47.619 | 0.00 | 0.00 | 41.90 | 3.60 |
2612 | 2715 | 1.001181 | ACCATGAATGCTTGTGTTGGC | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
2651 | 2754 | 6.808321 | AGATAACATCAGGCAAAGGTAGTA | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2652 | 2755 | 5.700402 | AGATAACATCAGGCAAAGGTAGT | 57.300 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2653 | 2756 | 5.882557 | ACAAGATAACATCAGGCAAAGGTAG | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2699 | 2803 | 5.989777 | GCAGGAACATACGGTACAATAATCT | 59.010 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2701 | 2805 | 5.061179 | GGCAGGAACATACGGTACAATAAT | 58.939 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
2730 | 2834 | 6.398918 | ACAGACTAGGATCAACAACATACAC | 58.601 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2732 | 2836 | 6.253727 | CGAACAGACTAGGATCAACAACATAC | 59.746 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
2737 | 2841 | 4.321750 | GGACGAACAGACTAGGATCAACAA | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 2.83 |
2757 | 2861 | 5.123027 | CAGAAAGCTTGATAAACAGGAGGAC | 59.877 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2759 | 2863 | 4.142513 | GCAGAAAGCTTGATAAACAGGAGG | 60.143 | 45.833 | 0.00 | 0.00 | 41.15 | 4.30 |
2920 | 3029 | 4.809426 | CCATTTAACGGCTGTAGTAGGAAG | 59.191 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
2935 | 3044 | 2.927028 | AGGCACGGTATCCCATTTAAC | 58.073 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
2938 | 3047 | 2.927028 | GTAAGGCACGGTATCCCATTT | 58.073 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
3206 | 3315 | 5.400485 | CAGAGTTGCTGCAAAACTTACATTC | 59.600 | 40.000 | 17.80 | 0.31 | 37.98 | 2.67 |
3235 | 3344 | 6.825721 | AGCTTTCACCTACTAATCCAATTCAG | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3269 | 3378 | 1.763770 | CCCCAGAGGAACAACAGCT | 59.236 | 57.895 | 0.00 | 0.00 | 38.24 | 4.24 |
3286 | 3395 | 8.579863 | ACGAATATAACTGTACAAGTATACCCC | 58.420 | 37.037 | 0.00 | 0.00 | 38.56 | 4.95 |
3357 | 3693 | 1.625818 | ACATCTTTCTTCTCTGCGGGT | 59.374 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
3379 | 3715 | 4.769488 | TCTGCCAGAGCTAGGATATTACAG | 59.231 | 45.833 | 8.81 | 5.41 | 40.80 | 2.74 |
3381 | 3717 | 5.930837 | ATCTGCCAGAGCTAGGATATTAC | 57.069 | 43.478 | 8.81 | 0.00 | 40.80 | 1.89 |
3384 | 3720 | 5.839517 | AAAATCTGCCAGAGCTAGGATAT | 57.160 | 39.130 | 8.81 | 0.00 | 40.80 | 1.63 |
3385 | 3721 | 5.367937 | AGAAAAATCTGCCAGAGCTAGGATA | 59.632 | 40.000 | 8.81 | 0.00 | 40.80 | 2.59 |
3386 | 3722 | 4.165758 | AGAAAAATCTGCCAGAGCTAGGAT | 59.834 | 41.667 | 8.81 | 0.00 | 40.80 | 3.24 |
3387 | 3723 | 3.521126 | AGAAAAATCTGCCAGAGCTAGGA | 59.479 | 43.478 | 8.81 | 0.00 | 40.80 | 2.94 |
3388 | 3724 | 3.883669 | AGAAAAATCTGCCAGAGCTAGG | 58.116 | 45.455 | 0.00 | 0.27 | 40.80 | 3.02 |
3389 | 3725 | 5.647225 | AGAAAGAAAAATCTGCCAGAGCTAG | 59.353 | 40.000 | 0.00 | 0.00 | 40.80 | 3.42 |
3476 | 3812 | 3.666274 | TGGTACACGTAAAACCATCAGG | 58.334 | 45.455 | 10.79 | 0.00 | 38.36 | 3.86 |
3496 | 3832 | 2.859165 | TTGCAGACCTTTACTCCCTG | 57.141 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3508 | 3844 | 0.595095 | CCTGACCAAGCTTTGCAGAC | 59.405 | 55.000 | 17.20 | 1.29 | 0.00 | 3.51 |
3519 | 3855 | 2.708861 | ACTGATGTACAACCCTGACCAA | 59.291 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
3553 | 3889 | 7.912250 | CAGCAACCAAAAAGAGCTATATACAAG | 59.088 | 37.037 | 0.00 | 0.00 | 33.59 | 3.16 |
3561 | 3897 | 2.548057 | CGTCAGCAACCAAAAAGAGCTA | 59.452 | 45.455 | 0.00 | 0.00 | 33.59 | 3.32 |
3562 | 3898 | 1.334869 | CGTCAGCAACCAAAAAGAGCT | 59.665 | 47.619 | 0.00 | 0.00 | 35.63 | 4.09 |
3563 | 3899 | 1.333619 | TCGTCAGCAACCAAAAAGAGC | 59.666 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
3564 | 3900 | 3.691049 | TTCGTCAGCAACCAAAAAGAG | 57.309 | 42.857 | 0.00 | 0.00 | 0.00 | 2.85 |
3565 | 3901 | 3.442273 | ACTTTCGTCAGCAACCAAAAAGA | 59.558 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3594 | 3930 | 6.093495 | CGGAATAAGAGGCATTGTAACTTCAA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
3613 | 3949 | 9.525409 | GAAGTTACTCTATGTAAAAGCGGAATA | 57.475 | 33.333 | 0.00 | 0.00 | 42.12 | 1.75 |
3649 | 3985 | 5.668471 | ACAGACATATGATGTGAGTTCTGG | 58.332 | 41.667 | 10.38 | 0.00 | 45.03 | 3.86 |
3664 | 4000 | 5.542635 | ACACAGGAGAAGGTTTACAGACATA | 59.457 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3757 | 4093 | 2.223572 | GCCATGCTACCGATTTCTTTGG | 60.224 | 50.000 | 0.00 | 0.00 | 34.63 | 3.28 |
3765 | 4101 | 2.838736 | CTTAGTTGCCATGCTACCGAT | 58.161 | 47.619 | 0.00 | 0.00 | 35.09 | 4.18 |
3766 | 4102 | 1.742411 | GCTTAGTTGCCATGCTACCGA | 60.742 | 52.381 | 0.00 | 0.00 | 35.09 | 4.69 |
3767 | 4103 | 0.657840 | GCTTAGTTGCCATGCTACCG | 59.342 | 55.000 | 0.00 | 0.00 | 35.09 | 4.02 |
3850 | 4186 | 6.012745 | AGCTCCAAAAATATATCCCACATCC | 58.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3854 | 4190 | 5.985530 | GCAAAGCTCCAAAAATATATCCCAC | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3855 | 4191 | 5.898972 | AGCAAAGCTCCAAAAATATATCCCA | 59.101 | 36.000 | 0.00 | 0.00 | 30.62 | 4.37 |
3957 | 4294 | 2.744494 | GCAGTCCTGGGCTCTATCTTTG | 60.744 | 54.545 | 0.00 | 0.00 | 0.00 | 2.77 |
3966 | 4303 | 1.994463 | CTTTAGGCAGTCCTGGGCT | 59.006 | 57.895 | 0.00 | 0.00 | 44.08 | 5.19 |
4026 | 4363 | 9.174166 | TCTGATGGAGCTTTTTAAAATACTACC | 57.826 | 33.333 | 0.55 | 6.80 | 0.00 | 3.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.