Multiple sequence alignment - TraesCS1B01G301100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G301100 chr1B 100.000 2504 0 0 1 2504 521859932 521862435 0.000000e+00 4625
1 TraesCS1B01G301100 chr1B 85.194 797 84 25 804 1586 608335898 608335122 0.000000e+00 787
2 TraesCS1B01G301100 chr1B 84.145 801 79 23 804 1571 608043027 608042242 0.000000e+00 732
3 TraesCS1B01G301100 chr1B 83.353 841 87 34 804 1612 610892995 610893814 0.000000e+00 728
4 TraesCS1B01G301100 chr1B 98.208 279 5 0 1839 2117 660082335 660082057 2.890000e-134 488
5 TraesCS1B01G301100 chr1B 97.193 285 8 0 1837 2121 667351781 667352065 1.350000e-132 483
6 TraesCS1B01G301100 chr1A 89.483 1702 113 26 1 1681 487603504 487605160 0.000000e+00 2091
7 TraesCS1B01G301100 chr1A 85.204 784 79 29 793 1558 541461065 541460301 0.000000e+00 771
8 TraesCS1B01G301100 chr1A 88.816 608 44 18 793 1391 541343543 541344135 0.000000e+00 725
9 TraesCS1B01G301100 chr1A 88.462 338 22 4 2115 2451 487606367 487606688 2.330000e-105 392
10 TraesCS1B01G301100 chr1D 90.282 1101 61 20 627 1708 388603198 388604271 0.000000e+00 1399
11 TraesCS1B01G301100 chr1D 83.391 861 80 42 793 1612 445367096 445366258 0.000000e+00 739
12 TraesCS1B01G301100 chr1D 94.103 390 22 1 2115 2504 388604357 388604745 2.140000e-165 592
13 TraesCS1B01G301100 chr1D 95.604 91 4 0 1755 1845 388604273 388604363 2.010000e-31 147
14 TraesCS1B01G301100 chr6B 81.976 921 114 36 857 1754 679983631 679982740 0.000000e+00 734
15 TraesCS1B01G301100 chr6B 96.587 293 6 3 1838 2129 707744117 707744406 1.350000e-132 483
16 TraesCS1B01G301100 chr6A 97.931 290 5 1 1839 2127 38758093 38757804 3.720000e-138 501
17 TraesCS1B01G301100 chr2B 98.566 279 3 1 1838 2115 640744132 640743854 2.240000e-135 492
18 TraesCS1B01G301100 chr7A 98.208 279 5 0 1839 2117 620197318 620197040 2.890000e-134 488
19 TraesCS1B01G301100 chrUn 97.527 283 7 0 1839 2121 267218700 267218418 3.740000e-133 484
20 TraesCS1B01G301100 chr3B 97.527 283 7 0 1839 2121 545805421 545805139 3.740000e-133 484
21 TraesCS1B01G301100 chr3B 96.897 290 7 1 1839 2128 679723213 679723500 3.740000e-133 484


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G301100 chr1B 521859932 521862435 2503 False 4625.000000 4625 100.000000 1 2504 1 chr1B.!!$F1 2503
1 TraesCS1B01G301100 chr1B 608335122 608335898 776 True 787.000000 787 85.194000 804 1586 1 chr1B.!!$R2 782
2 TraesCS1B01G301100 chr1B 608042242 608043027 785 True 732.000000 732 84.145000 804 1571 1 chr1B.!!$R1 767
3 TraesCS1B01G301100 chr1B 610892995 610893814 819 False 728.000000 728 83.353000 804 1612 1 chr1B.!!$F2 808
4 TraesCS1B01G301100 chr1A 487603504 487606688 3184 False 1241.500000 2091 88.972500 1 2451 2 chr1A.!!$F2 2450
5 TraesCS1B01G301100 chr1A 541460301 541461065 764 True 771.000000 771 85.204000 793 1558 1 chr1A.!!$R1 765
6 TraesCS1B01G301100 chr1A 541343543 541344135 592 False 725.000000 725 88.816000 793 1391 1 chr1A.!!$F1 598
7 TraesCS1B01G301100 chr1D 445366258 445367096 838 True 739.000000 739 83.391000 793 1612 1 chr1D.!!$R1 819
8 TraesCS1B01G301100 chr1D 388603198 388604745 1547 False 712.666667 1399 93.329667 627 2504 3 chr1D.!!$F1 1877
9 TraesCS1B01G301100 chr6B 679982740 679983631 891 True 734.000000 734 81.976000 857 1754 1 chr6B.!!$R1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 791 0.26023 TGAAGGAAAGCCACAACCCA 59.74 50.0 0.0 0.0 36.29 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2033 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.745312 AATTGAGCGATGATGGACCTATA 57.255 39.130 0.00 0.00 0.00 1.31
44 45 4.790765 TTGAGCGATGATGGACCTATAG 57.209 45.455 0.00 0.00 0.00 1.31
105 106 1.906574 ACGATATGTTGTGGTGGGAGT 59.093 47.619 0.00 0.00 0.00 3.85
145 146 1.401905 CCGGTAGAAGCATTGCCTTTC 59.598 52.381 4.70 3.79 0.00 2.62
146 147 1.401905 CGGTAGAAGCATTGCCTTTCC 59.598 52.381 4.70 1.63 0.00 3.13
153 154 5.018809 AGAAGCATTGCCTTTCCATTTAGA 58.981 37.500 4.70 0.00 0.00 2.10
171 172 8.774586 CCATTTAGACGAAATAGAGGGTTTATG 58.225 37.037 0.00 0.00 35.45 1.90
176 177 8.019656 AGACGAAATAGAGGGTTTATGTACAT 57.980 34.615 13.93 13.93 0.00 2.29
186 187 5.103686 AGGGTTTATGTACATAGGTGCCAAT 60.104 40.000 14.96 6.85 0.00 3.16
201 202 3.044894 TGCCAATTTTTGAAGGGGAACT 58.955 40.909 0.00 0.00 0.00 3.01
205 206 1.036707 TTTTTGAAGGGGAACTGGCG 58.963 50.000 0.00 0.00 0.00 5.69
216 217 0.958822 GAACTGGCGAAACCCACAAT 59.041 50.000 0.00 0.00 37.83 2.71
249 250 8.773404 ACACTAGATTACAACTCAACCAATAC 57.227 34.615 0.00 0.00 0.00 1.89
250 251 7.822822 ACACTAGATTACAACTCAACCAATACC 59.177 37.037 0.00 0.00 0.00 2.73
251 252 7.280205 CACTAGATTACAACTCAACCAATACCC 59.720 40.741 0.00 0.00 0.00 3.69
252 253 6.134535 AGATTACAACTCAACCAATACCCA 57.865 37.500 0.00 0.00 0.00 4.51
253 254 5.944007 AGATTACAACTCAACCAATACCCAC 59.056 40.000 0.00 0.00 0.00 4.61
254 255 3.876309 ACAACTCAACCAATACCCACT 57.124 42.857 0.00 0.00 0.00 4.00
255 256 3.486383 ACAACTCAACCAATACCCACTG 58.514 45.455 0.00 0.00 0.00 3.66
256 257 3.117663 ACAACTCAACCAATACCCACTGT 60.118 43.478 0.00 0.00 0.00 3.55
257 258 3.140325 ACTCAACCAATACCCACTGTG 57.860 47.619 0.00 0.00 0.00 3.66
258 259 2.441750 ACTCAACCAATACCCACTGTGT 59.558 45.455 7.08 0.00 0.00 3.72
259 260 3.117663 ACTCAACCAATACCCACTGTGTT 60.118 43.478 7.08 0.00 0.00 3.32
260 261 3.482436 TCAACCAATACCCACTGTGTTC 58.518 45.455 7.08 0.00 0.00 3.18
261 262 3.137544 TCAACCAATACCCACTGTGTTCT 59.862 43.478 7.08 0.00 0.00 3.01
262 263 3.140325 ACCAATACCCACTGTGTTCTG 57.860 47.619 7.08 0.00 0.00 3.02
263 264 2.224769 ACCAATACCCACTGTGTTCTGG 60.225 50.000 7.08 8.24 0.00 3.86
269 270 3.953775 ACTGTGTTCTGGGCCCGG 61.954 66.667 26.30 26.30 0.00 5.73
281 282 4.579127 GCCCGGCCATAGAACATT 57.421 55.556 2.24 0.00 0.00 2.71
333 335 6.930164 TGCATTAAGAAATGTTTGCACATCTT 59.070 30.769 0.00 0.00 43.34 2.40
522 525 3.876341 TGTAGAAAAAGGGAACACACGT 58.124 40.909 0.00 0.00 0.00 4.49
532 535 4.773013 AGGGAACACACGTAAAGAAAAGA 58.227 39.130 0.00 0.00 0.00 2.52
608 611 7.570140 CGCTCCATTATACTCATCAACAATCAC 60.570 40.741 0.00 0.00 0.00 3.06
615 618 2.416547 CTCATCAACAATCACGGTCCAC 59.583 50.000 0.00 0.00 0.00 4.02
683 686 0.519175 CTCGCGTTGAATTTCAGCCG 60.519 55.000 5.77 13.20 0.00 5.52
747 753 9.511144 CAGAAAGTTGGTTCGTAACTTAAAATT 57.489 29.630 3.84 0.00 44.98 1.82
784 790 1.632589 ATGAAGGAAAGCCACAACCC 58.367 50.000 0.00 0.00 36.29 4.11
785 791 0.260230 TGAAGGAAAGCCACAACCCA 59.740 50.000 0.00 0.00 36.29 4.51
786 792 0.673985 GAAGGAAAGCCACAACCCAC 59.326 55.000 0.00 0.00 36.29 4.61
787 793 0.759060 AAGGAAAGCCACAACCCACC 60.759 55.000 0.00 0.00 36.29 4.61
788 794 1.456705 GGAAAGCCACAACCCACCA 60.457 57.895 0.00 0.00 0.00 4.17
789 795 1.463553 GGAAAGCCACAACCCACCAG 61.464 60.000 0.00 0.00 0.00 4.00
790 796 2.087462 GAAAGCCACAACCCACCAGC 62.087 60.000 0.00 0.00 0.00 4.85
791 797 2.870035 AAAGCCACAACCCACCAGCA 62.870 55.000 0.00 0.00 0.00 4.41
957 973 3.003763 AGACGCCTCCTCCAACCC 61.004 66.667 0.00 0.00 0.00 4.11
1233 1256 0.901124 GCATCTCGGGCCTCATCTAT 59.099 55.000 0.84 0.00 0.00 1.98
1308 1331 2.989824 ACCTACACCGAGCACGCT 60.990 61.111 0.00 0.00 38.29 5.07
1408 1449 3.522731 CTCGTCCTCGCCCTCCTG 61.523 72.222 0.00 0.00 36.96 3.86
1411 1452 3.474570 GTCCTCGCCCTCCTGCAT 61.475 66.667 0.00 0.00 0.00 3.96
1412 1453 2.134287 GTCCTCGCCCTCCTGCATA 61.134 63.158 0.00 0.00 0.00 3.14
1413 1454 1.152247 TCCTCGCCCTCCTGCATAT 60.152 57.895 0.00 0.00 0.00 1.78
1417 1464 2.519622 CGCCCTCCTGCATATCCCA 61.520 63.158 0.00 0.00 0.00 4.37
1429 1476 6.894654 TCCTGCATATCCCAAAAAGTTTGATA 59.105 34.615 2.30 0.00 0.00 2.15
1430 1477 7.564660 TCCTGCATATCCCAAAAAGTTTGATAT 59.435 33.333 2.30 0.00 0.00 1.63
1431 1478 7.654520 CCTGCATATCCCAAAAAGTTTGATATG 59.345 37.037 19.68 19.68 43.96 1.78
1433 1480 8.756927 TGCATATCCCAAAAAGTTTGATATGAA 58.243 29.630 24.26 17.24 43.90 2.57
1434 1481 9.768662 GCATATCCCAAAAAGTTTGATATGAAT 57.231 29.630 24.26 9.13 43.90 2.57
1451 1498 4.742438 TGAATGCGACTTGTTTAGTTCC 57.258 40.909 0.00 0.00 37.17 3.62
1452 1501 3.185594 TGAATGCGACTTGTTTAGTTCCG 59.814 43.478 0.00 0.00 37.17 4.30
1538 1601 3.492102 ACCTGTGTCTGTGCAAATACT 57.508 42.857 0.00 0.00 0.00 2.12
1578 1641 1.352687 TGTTGGTTGGCCTGCTACATA 59.647 47.619 3.32 0.00 35.27 2.29
1628 1694 1.649664 TGCAAAATTGTGTGCGCTTT 58.350 40.000 9.73 0.00 43.93 3.51
1712 1788 4.202040 TGGCCGAATCATGAACATCATTTC 60.202 41.667 0.00 0.00 34.28 2.17
1716 1792 5.530171 CCGAATCATGAACATCATTTCCTCT 59.470 40.000 0.00 0.00 34.28 3.69
1719 1795 6.694877 ATCATGAACATCATTTCCTCTGTG 57.305 37.500 0.00 0.00 34.28 3.66
1721 1797 6.005823 TCATGAACATCATTTCCTCTGTGTT 58.994 36.000 0.00 0.00 34.28 3.32
1724 1800 4.510038 ACATCATTTCCTCTGTGTTTGC 57.490 40.909 0.00 0.00 0.00 3.68
1733 1811 6.899393 TTCCTCTGTGTTTGCTATTTGATT 57.101 33.333 0.00 0.00 0.00 2.57
1734 1812 6.500684 TCCTCTGTGTTTGCTATTTGATTC 57.499 37.500 0.00 0.00 0.00 2.52
1739 1817 6.149308 TCTGTGTTTGCTATTTGATTCGATGT 59.851 34.615 0.00 0.00 0.00 3.06
1740 1818 6.085573 TGTGTTTGCTATTTGATTCGATGTG 58.914 36.000 0.00 0.00 0.00 3.21
1815 1893 6.338146 AGATGGAATTTGTCTGCATTTCATG 58.662 36.000 0.00 0.00 0.00 3.07
1835 1913 6.598503 TCATGCATCCAGTCTTAGATTGATT 58.401 36.000 6.30 0.00 0.00 2.57
1836 1914 7.058525 TCATGCATCCAGTCTTAGATTGATTT 58.941 34.615 6.30 0.00 0.00 2.17
1837 1915 6.688637 TGCATCCAGTCTTAGATTGATTTG 57.311 37.500 6.30 2.59 0.00 2.32
1838 1916 6.182627 TGCATCCAGTCTTAGATTGATTTGT 58.817 36.000 6.30 0.00 0.00 2.83
1839 1917 6.660521 TGCATCCAGTCTTAGATTGATTTGTT 59.339 34.615 6.30 0.00 0.00 2.83
1840 1918 7.828717 TGCATCCAGTCTTAGATTGATTTGTTA 59.171 33.333 6.30 0.00 0.00 2.41
1841 1919 8.341173 GCATCCAGTCTTAGATTGATTTGTTAG 58.659 37.037 6.30 0.00 0.00 2.34
1842 1920 8.834465 CATCCAGTCTTAGATTGATTTGTTAGG 58.166 37.037 6.30 0.00 0.00 2.69
1843 1921 6.823689 TCCAGTCTTAGATTGATTTGTTAGGC 59.176 38.462 6.30 0.00 0.00 3.93
1844 1922 6.825721 CCAGTCTTAGATTGATTTGTTAGGCT 59.174 38.462 6.30 0.00 0.00 4.58
1845 1923 7.201679 CCAGTCTTAGATTGATTTGTTAGGCTG 60.202 40.741 6.30 0.00 34.72 4.85
1846 1924 7.335422 CAGTCTTAGATTGATTTGTTAGGCTGT 59.665 37.037 0.00 0.00 31.39 4.40
1847 1925 7.885399 AGTCTTAGATTGATTTGTTAGGCTGTT 59.115 33.333 0.00 0.00 0.00 3.16
1848 1926 8.178313 GTCTTAGATTGATTTGTTAGGCTGTTC 58.822 37.037 0.00 0.00 0.00 3.18
1849 1927 7.882791 TCTTAGATTGATTTGTTAGGCTGTTCA 59.117 33.333 0.00 0.00 0.00 3.18
1852 1930 5.843673 TTGATTTGTTAGGCTGTTCACAA 57.156 34.783 0.00 0.00 0.00 3.33
1853 1931 6.403866 TTGATTTGTTAGGCTGTTCACAAT 57.596 33.333 0.00 0.00 0.00 2.71
1854 1932 5.771469 TGATTTGTTAGGCTGTTCACAATG 58.229 37.500 0.00 0.00 0.00 2.82
1855 1933 4.582701 TTTGTTAGGCTGTTCACAATGG 57.417 40.909 0.00 0.00 0.00 3.16
1856 1934 2.513753 TGTTAGGCTGTTCACAATGGG 58.486 47.619 0.00 0.00 0.00 4.00
1857 1935 1.818674 GTTAGGCTGTTCACAATGGGG 59.181 52.381 0.00 0.00 0.00 4.96
1858 1936 1.367346 TAGGCTGTTCACAATGGGGA 58.633 50.000 0.00 0.00 0.00 4.81
1859 1937 0.038744 AGGCTGTTCACAATGGGGAG 59.961 55.000 0.00 0.00 0.00 4.30
1860 1938 0.967380 GGCTGTTCACAATGGGGAGG 60.967 60.000 0.00 0.00 0.00 4.30
1861 1939 0.038166 GCTGTTCACAATGGGGAGGA 59.962 55.000 0.00 0.00 0.00 3.71
1862 1940 1.547675 GCTGTTCACAATGGGGAGGAA 60.548 52.381 0.00 0.00 0.00 3.36
1863 1941 2.162681 CTGTTCACAATGGGGAGGAAC 58.837 52.381 0.00 0.00 38.59 3.62
1865 1943 2.176798 TGTTCACAATGGGGAGGAACTT 59.823 45.455 0.00 0.00 41.55 2.66
1867 1945 4.010349 GTTCACAATGGGGAGGAACTTAG 58.990 47.826 0.00 0.00 41.55 2.18
1868 1946 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
1869 1947 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
1870 1948 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
1872 1950 4.037927 CAATGGGGAGGAACTTAGGAGTA 58.962 47.826 0.00 0.00 41.55 2.59
1874 1952 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
1875 1953 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
1878 1956 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
1879 1957 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
1880 1958 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
1881 1959 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
1882 1960 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
1883 1961 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
1891 1969 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
1892 1970 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
1893 1971 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
1894 1972 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
1895 1973 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
1896 1974 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
1898 1976 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
1899 1977 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
1900 1978 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
1901 1979 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
1902 1980 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
1905 1983 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
1906 1984 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
1911 1989 6.875948 ATACAACTTTGCTTATGTGACACA 57.124 33.333 11.41 11.41 0.00 3.72
1912 1990 5.772825 ACAACTTTGCTTATGTGACACAT 57.227 34.783 23.83 23.83 42.35 3.21
1914 1992 7.452880 ACAACTTTGCTTATGTGACACATAT 57.547 32.000 25.12 7.93 40.41 1.78
1915 1993 7.885297 ACAACTTTGCTTATGTGACACATATT 58.115 30.769 25.12 13.81 40.41 1.28
1916 1994 8.359642 ACAACTTTGCTTATGTGACACATATTT 58.640 29.630 25.12 6.87 40.41 1.40
1917 1995 9.838975 CAACTTTGCTTATGTGACACATATTTA 57.161 29.630 25.12 12.38 40.41 1.40
1929 2007 9.591792 TGTGACACATATTTAATGAAGAGAGAG 57.408 33.333 3.56 0.00 0.00 3.20
1930 2008 9.039870 GTGACACATATTTAATGAAGAGAGAGG 57.960 37.037 0.00 0.00 0.00 3.69
1932 2010 8.954950 ACACATATTTAATGAAGAGAGAGGTG 57.045 34.615 0.00 0.00 0.00 4.00
1933 2011 7.497249 ACACATATTTAATGAAGAGAGAGGTGC 59.503 37.037 0.00 0.00 0.00 5.01
1934 2012 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
1935 2013 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
1936 2014 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
1938 2016 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
1939 2017 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
1940 2018 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
1941 2019 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
1942 2020 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
1943 2021 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
1944 2022 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
1946 2024 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
1963 2041 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
1964 2042 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
1965 2043 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
1966 2044 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
1967 2045 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
1968 2046 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
1969 2047 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
1971 2049 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
1972 2050 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
1973 2051 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
1974 2052 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
1975 2053 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
1977 2055 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
1978 2056 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
1980 2058 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
1981 2059 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
1982 2060 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
1983 2061 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
1984 2062 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
1985 2063 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
1986 2064 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
1987 2065 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
1989 2067 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
1991 2069 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
1993 2071 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
1994 2072 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
1995 2073 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
1997 2075 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
1998 2076 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
2017 2095 7.566760 ACCTAATAAATTCATCGTTGCATGA 57.433 32.000 0.00 0.00 0.00 3.07
2018 2096 7.417612 ACCTAATAAATTCATCGTTGCATGAC 58.582 34.615 0.00 0.00 32.28 3.06
2019 2097 7.066887 ACCTAATAAATTCATCGTTGCATGACA 59.933 33.333 0.00 0.00 32.28 3.58
2020 2098 7.376866 CCTAATAAATTCATCGTTGCATGACAC 59.623 37.037 0.00 0.00 32.28 3.67
2021 2099 4.771590 AAATTCATCGTTGCATGACACT 57.228 36.364 0.00 0.00 32.28 3.55
2024 2102 3.311486 TCATCGTTGCATGACACTACA 57.689 42.857 0.00 0.00 0.00 2.74
2025 2103 3.860641 TCATCGTTGCATGACACTACAT 58.139 40.909 0.00 0.00 0.00 2.29
2026 2104 5.004922 TCATCGTTGCATGACACTACATA 57.995 39.130 0.00 0.00 0.00 2.29
2027 2105 5.043248 TCATCGTTGCATGACACTACATAG 58.957 41.667 0.00 0.00 0.00 2.23
2028 2106 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2029 2107 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
2030 2108 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
2031 2109 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
2032 2110 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
2034 2112 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
2037 2115 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
2038 2116 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
2041 2119 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
2043 2121 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
2045 2123 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
2047 2125 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
2048 2126 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
2049 2127 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
2050 2128 1.416772 GTTCCTACCCACTATGGAGGC 59.583 57.143 0.00 0.00 40.96 4.70
2052 2130 1.051812 CCTACCCACTATGGAGGCAG 58.948 60.000 0.00 0.00 40.96 4.85
2053 2131 1.692762 CCTACCCACTATGGAGGCAGT 60.693 57.143 0.00 0.00 40.96 4.40
2054 2132 2.425829 CCTACCCACTATGGAGGCAGTA 60.426 54.545 0.00 0.00 40.96 2.74
2055 2133 2.263895 ACCCACTATGGAGGCAGTAA 57.736 50.000 0.00 0.00 40.96 2.24
2056 2134 1.838077 ACCCACTATGGAGGCAGTAAC 59.162 52.381 0.00 0.00 40.96 2.50
2057 2135 1.837439 CCCACTATGGAGGCAGTAACA 59.163 52.381 0.00 0.00 40.96 2.41
2058 2136 2.439507 CCCACTATGGAGGCAGTAACAT 59.560 50.000 0.00 0.00 40.96 2.71
2059 2137 3.646162 CCCACTATGGAGGCAGTAACATA 59.354 47.826 0.00 0.00 40.96 2.29
2060 2138 4.262635 CCCACTATGGAGGCAGTAACATAG 60.263 50.000 8.52 8.52 45.07 2.23
2066 2144 4.215908 TGGAGGCAGTAACATAGTCTAGG 58.784 47.826 0.00 0.00 0.00 3.02
2067 2145 3.574826 GGAGGCAGTAACATAGTCTAGGG 59.425 52.174 0.00 0.00 0.00 3.53
2068 2146 4.471548 GAGGCAGTAACATAGTCTAGGGA 58.528 47.826 0.00 0.00 0.00 4.20
2069 2147 4.880164 AGGCAGTAACATAGTCTAGGGAA 58.120 43.478 0.00 0.00 0.00 3.97
2072 2150 5.452077 GGCAGTAACATAGTCTAGGGAAGTG 60.452 48.000 0.00 0.00 0.00 3.16
2074 2152 6.565234 CAGTAACATAGTCTAGGGAAGTGTG 58.435 44.000 0.00 0.00 0.00 3.82
2076 2154 7.338703 CAGTAACATAGTCTAGGGAAGTGTGTA 59.661 40.741 0.00 0.00 0.00 2.90
2078 2156 6.777213 ACATAGTCTAGGGAAGTGTGTAAG 57.223 41.667 0.00 0.00 0.00 2.34
2081 2159 7.892241 ACATAGTCTAGGGAAGTGTGTAAGTTA 59.108 37.037 0.00 0.00 0.00 2.24
2082 2160 6.587206 AGTCTAGGGAAGTGTGTAAGTTAC 57.413 41.667 6.06 6.06 0.00 2.50
2083 2161 6.313324 AGTCTAGGGAAGTGTGTAAGTTACT 58.687 40.000 14.00 0.00 0.00 2.24
2086 2164 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
2087 2165 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
2088 2166 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
2089 2167 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
2091 2169 7.491696 GGGAAGTGTGTAAGTTACTAGCTTATG 59.508 40.741 14.00 0.00 32.01 1.90
2093 2171 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
2094 2172 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
2095 2173 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
2096 2174 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
2097 2175 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
2098 2176 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
2099 2177 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
2100 2178 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
2101 2179 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
2102 2180 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
2103 2181 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
2104 2182 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
2107 2185 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
2108 2186 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
2109 2187 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
2110 2188 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
2111 2189 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
2112 2190 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
2113 2191 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
2132 3057 2.544685 CCTTATGCTCACCAGAGTTCG 58.455 52.381 0.00 0.00 44.00 3.95
2142 3067 1.013005 CCAGAGTTCGAGCTGTGCAG 61.013 60.000 19.19 4.82 0.00 4.41
2174 3099 3.728845 TGAAACTCTCACAGCTACCAAC 58.271 45.455 0.00 0.00 0.00 3.77
2249 3174 9.140286 CTTTTCTGTGTTATCTCTGTCGATTTA 57.860 33.333 0.00 0.00 0.00 1.40
2254 3179 9.388346 CTGTGTTATCTCTGTCGATTTATAGTC 57.612 37.037 0.00 0.00 0.00 2.59
2299 3225 1.745087 GAACGGTGATTCCATGTGCAT 59.255 47.619 0.00 0.00 35.57 3.96
2460 3386 4.731773 GCAAATCCTGCGGAAATCAGTTAG 60.732 45.833 0.00 0.00 42.37 2.34
2462 3388 1.017387 CCTGCGGAAATCAGTTAGCC 58.983 55.000 0.00 0.00 0.00 3.93
2490 3416 3.334583 TCAAGGCCAGTGCTTTAGTAG 57.665 47.619 5.01 0.00 34.65 2.57
2500 3426 4.800993 CAGTGCTTTAGTAGGTCTCATTCG 59.199 45.833 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.511540 CCTATAGGTCCATCATCGCTCAA 59.488 47.826 10.96 0.00 0.00 3.02
44 45 1.375268 GGCGCATGATAGGAGCTCC 60.375 63.158 26.22 26.22 0.00 4.70
117 118 1.344065 TGCTTCTACCGGTTCCTCAA 58.656 50.000 15.04 0.00 0.00 3.02
118 119 1.568504 ATGCTTCTACCGGTTCCTCA 58.431 50.000 15.04 5.50 0.00 3.86
119 120 2.280628 CAATGCTTCTACCGGTTCCTC 58.719 52.381 15.04 0.00 0.00 3.71
128 129 4.725790 AATGGAAAGGCAATGCTTCTAC 57.274 40.909 4.82 0.00 0.00 2.59
129 130 6.095440 GTCTAAATGGAAAGGCAATGCTTCTA 59.905 38.462 4.82 0.07 0.00 2.10
134 135 3.128589 TCGTCTAAATGGAAAGGCAATGC 59.871 43.478 0.00 0.00 0.00 3.56
145 146 8.774586 CATAAACCCTCTATTTCGTCTAAATGG 58.225 37.037 0.00 0.00 38.29 3.16
146 147 9.326413 ACATAAACCCTCTATTTCGTCTAAATG 57.674 33.333 0.00 0.00 38.29 2.32
153 154 8.365647 CCTATGTACATAAACCCTCTATTTCGT 58.634 37.037 16.17 0.00 0.00 3.85
171 172 6.099341 CCTTCAAAAATTGGCACCTATGTAC 58.901 40.000 0.00 0.00 0.00 2.90
176 177 2.903135 CCCCTTCAAAAATTGGCACCTA 59.097 45.455 0.00 0.00 0.00 3.08
186 187 1.036707 CGCCAGTTCCCCTTCAAAAA 58.963 50.000 0.00 0.00 0.00 1.94
201 202 3.770589 CCATTGTGGGTTTCGCCA 58.229 55.556 0.00 0.00 39.65 5.69
216 217 3.090210 TGTAATCTAGTGTCGGTCCCA 57.910 47.619 0.00 0.00 0.00 4.37
220 221 5.467705 GTTGAGTTGTAATCTAGTGTCGGT 58.532 41.667 0.00 0.00 0.00 4.69
250 251 2.282462 GGGCCCAGAACACAGTGG 60.282 66.667 19.95 0.00 0.00 4.00
251 252 2.669569 CGGGCCCAGAACACAGTG 60.670 66.667 24.92 0.00 0.00 3.66
252 253 3.953775 CCGGGCCCAGAACACAGT 61.954 66.667 24.92 0.00 0.00 3.55
264 265 0.668535 GAAATGTTCTATGGCCGGGC 59.331 55.000 23.42 23.42 0.00 6.13
269 270 3.950395 AGCAGAAGGAAATGTTCTATGGC 59.050 43.478 0.00 0.00 32.81 4.40
276 277 7.765695 TTAAGATCAAGCAGAAGGAAATGTT 57.234 32.000 0.00 0.00 0.00 2.71
281 282 8.859090 TGAAAATTTAAGATCAAGCAGAAGGAA 58.141 29.630 0.00 0.00 0.00 3.36
492 495 9.157104 GTGTTCCCTTTTTCTACATTTCAAAAA 57.843 29.630 0.00 0.00 0.00 1.94
496 499 6.459024 CGTGTGTTCCCTTTTTCTACATTTCA 60.459 38.462 0.00 0.00 0.00 2.69
497 500 5.912955 CGTGTGTTCCCTTTTTCTACATTTC 59.087 40.000 0.00 0.00 0.00 2.17
500 503 4.457466 ACGTGTGTTCCCTTTTTCTACAT 58.543 39.130 0.00 0.00 0.00 2.29
501 504 3.876341 ACGTGTGTTCCCTTTTTCTACA 58.124 40.909 0.00 0.00 0.00 2.74
502 505 5.989551 TTACGTGTGTTCCCTTTTTCTAC 57.010 39.130 0.00 0.00 0.00 2.59
503 506 6.347696 TCTTTACGTGTGTTCCCTTTTTCTA 58.652 36.000 0.00 0.00 0.00 2.10
505 508 5.488645 TCTTTACGTGTGTTCCCTTTTTC 57.511 39.130 0.00 0.00 0.00 2.29
538 541 2.926838 TGTTCCGCTTTTCAAAAACTGC 59.073 40.909 0.00 0.00 0.00 4.40
539 542 6.820470 TTATGTTCCGCTTTTCAAAAACTG 57.180 33.333 0.00 0.00 0.00 3.16
540 543 9.535878 TTATTTATGTTCCGCTTTTCAAAAACT 57.464 25.926 0.00 0.00 0.00 2.66
585 588 6.705825 CCGTGATTGTTGATGAGTATAATGGA 59.294 38.462 0.00 0.00 0.00 3.41
608 611 1.298788 GTTTTTGGTGCGTGGACCG 60.299 57.895 6.05 0.00 39.07 4.79
615 618 2.200899 CCTCCTTTTGTTTTTGGTGCG 58.799 47.619 0.00 0.00 0.00 5.34
683 686 5.066893 TGCTTTGATTGCAGATATGAAGGTC 59.933 40.000 0.00 0.00 35.31 3.85
747 753 7.287061 TCCTTCATTTTGTGAGAACTTTCCTA 58.713 34.615 0.00 0.00 38.29 2.94
766 772 0.260230 TGGGTTGTGGCTTTCCTTCA 59.740 50.000 0.00 0.00 0.00 3.02
957 973 1.341089 GGGTGCTTTAAAGGGGAGAGG 60.341 57.143 16.78 0.00 0.00 3.69
1179 1202 4.637489 CGAGCGAGCCTCCGGATG 62.637 72.222 3.57 2.55 37.27 3.51
1404 1445 5.083122 TCAAACTTTTTGGGATATGCAGGA 58.917 37.500 0.00 0.00 0.00 3.86
1408 1449 9.768662 ATTCATATCAAACTTTTTGGGATATGC 57.231 29.630 12.68 0.00 43.56 3.14
1410 1451 9.768662 GCATTCATATCAAACTTTTTGGGATAT 57.231 29.630 0.00 0.00 32.83 1.63
1411 1452 7.920151 CGCATTCATATCAAACTTTTTGGGATA 59.080 33.333 0.00 0.00 0.00 2.59
1412 1453 6.757947 CGCATTCATATCAAACTTTTTGGGAT 59.242 34.615 0.00 0.00 0.00 3.85
1413 1454 6.071672 TCGCATTCATATCAAACTTTTTGGGA 60.072 34.615 0.00 0.00 0.00 4.37
1417 1464 7.867403 ACAAGTCGCATTCATATCAAACTTTTT 59.133 29.630 0.00 0.00 0.00 1.94
1429 1476 4.142902 CGGAACTAAACAAGTCGCATTCAT 60.143 41.667 0.00 0.00 37.50 2.57
1430 1477 3.185594 CGGAACTAAACAAGTCGCATTCA 59.814 43.478 0.00 0.00 37.50 2.57
1431 1478 3.185797 ACGGAACTAAACAAGTCGCATTC 59.814 43.478 0.00 0.00 37.50 2.67
1433 1480 2.762745 ACGGAACTAAACAAGTCGCAT 58.237 42.857 0.00 0.00 37.50 4.73
1434 1481 2.228138 ACGGAACTAAACAAGTCGCA 57.772 45.000 0.00 0.00 37.50 5.10
1451 1498 4.153835 ACTTCGAACTACAGAGGAAGTACG 59.846 45.833 0.00 0.00 43.84 3.67
1452 1501 5.180868 TCACTTCGAACTACAGAGGAAGTAC 59.819 44.000 0.00 0.00 43.83 2.73
1538 1601 6.589523 CCAACAAGACAAAATTCAGAAACACA 59.410 34.615 0.00 0.00 0.00 3.72
1558 1621 0.112218 ATGTAGCAGGCCAACCAACA 59.888 50.000 5.01 2.63 39.06 3.33
1578 1641 1.527034 ACAGCAATCGCACAACAGAT 58.473 45.000 0.00 0.00 42.27 2.90
1628 1694 6.155737 GGGTCTACTGGTAAAATCTAACTCCA 59.844 42.308 0.00 0.00 0.00 3.86
1684 1760 5.535783 TGATGTTCATGATTCGGCCATAAAT 59.464 36.000 2.24 0.00 0.00 1.40
1712 1788 5.122239 TCGAATCAAATAGCAAACACAGAGG 59.878 40.000 0.00 0.00 0.00 3.69
1716 1792 6.085573 CACATCGAATCAAATAGCAAACACA 58.914 36.000 0.00 0.00 0.00 3.72
1719 1795 7.114811 ACAAACACATCGAATCAAATAGCAAAC 59.885 33.333 0.00 0.00 0.00 2.93
1721 1797 6.676950 ACAAACACATCGAATCAAATAGCAA 58.323 32.000 0.00 0.00 0.00 3.91
1724 1800 7.904977 CCAGTACAAACACATCGAATCAAATAG 59.095 37.037 0.00 0.00 0.00 1.73
1733 1811 1.070914 TGCCCAGTACAAACACATCGA 59.929 47.619 0.00 0.00 0.00 3.59
1734 1812 1.464608 CTGCCCAGTACAAACACATCG 59.535 52.381 0.00 0.00 0.00 3.84
1739 1817 2.890311 CCAATTCTGCCCAGTACAAACA 59.110 45.455 0.00 0.00 0.00 2.83
1740 1818 2.890945 ACCAATTCTGCCCAGTACAAAC 59.109 45.455 0.00 0.00 0.00 2.93
1815 1893 6.690194 ACAAATCAATCTAAGACTGGATGC 57.310 37.500 0.00 0.00 0.00 3.91
1835 1913 2.890311 CCCATTGTGAACAGCCTAACAA 59.110 45.455 0.00 0.00 36.98 2.83
1836 1914 2.513753 CCCATTGTGAACAGCCTAACA 58.486 47.619 0.00 0.00 0.00 2.41
1837 1915 1.818674 CCCCATTGTGAACAGCCTAAC 59.181 52.381 0.00 0.00 0.00 2.34
1838 1916 1.707989 TCCCCATTGTGAACAGCCTAA 59.292 47.619 0.00 0.00 0.00 2.69
1839 1917 1.281867 CTCCCCATTGTGAACAGCCTA 59.718 52.381 0.00 0.00 0.00 3.93
1840 1918 0.038744 CTCCCCATTGTGAACAGCCT 59.961 55.000 0.00 0.00 0.00 4.58
1841 1919 0.967380 CCTCCCCATTGTGAACAGCC 60.967 60.000 0.00 0.00 0.00 4.85
1842 1920 0.038166 TCCTCCCCATTGTGAACAGC 59.962 55.000 0.00 0.00 0.00 4.40
1843 1921 2.162681 GTTCCTCCCCATTGTGAACAG 58.837 52.381 0.00 0.00 36.28 3.16
1844 1922 1.780309 AGTTCCTCCCCATTGTGAACA 59.220 47.619 0.00 0.00 38.17 3.18
1845 1923 2.586648 AGTTCCTCCCCATTGTGAAC 57.413 50.000 0.00 0.00 36.45 3.18
1846 1924 3.010138 CCTAAGTTCCTCCCCATTGTGAA 59.990 47.826 0.00 0.00 0.00 3.18
1847 1925 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
1848 1926 2.576191 TCCTAAGTTCCTCCCCATTGTG 59.424 50.000 0.00 0.00 0.00 3.33
1849 1927 2.846827 CTCCTAAGTTCCTCCCCATTGT 59.153 50.000 0.00 0.00 0.00 2.71
1852 1930 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
1853 1931 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
1854 1932 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
1855 1933 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
1856 1934 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
1857 1935 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
1858 1936 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
1859 1937 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
1860 1938 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
1861 1939 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
1862 1940 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
1868 1946 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
1869 1947 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
1870 1948 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
1872 1950 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
1874 1952 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
1875 1953 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
1878 1956 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
1879 1957 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
1880 1958 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
1881 1959 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
1882 1960 6.714810 TCACATAAGCAAAGTTGTATTGGAGT 59.285 34.615 0.00 0.00 0.00 3.85
1883 1961 7.023575 GTCACATAAGCAAAGTTGTATTGGAG 58.976 38.462 0.00 0.00 0.00 3.86
1886 1964 7.138081 TGTGTCACATAAGCAAAGTTGTATTG 58.862 34.615 0.18 0.00 0.00 1.90
1888 1966 6.875948 TGTGTCACATAAGCAAAGTTGTAT 57.124 33.333 0.18 0.00 0.00 2.29
1889 1967 6.875948 ATGTGTCACATAAGCAAAGTTGTA 57.124 33.333 16.99 0.00 36.99 2.41
1890 1968 5.772825 ATGTGTCACATAAGCAAAGTTGT 57.227 34.783 16.99 0.00 36.99 3.32
1891 1969 8.746922 AAATATGTGTCACATAAGCAAAGTTG 57.253 30.769 25.55 0.00 43.50 3.16
1905 1983 8.762645 ACCTCTCTCTTCATTAAATATGTGTCA 58.237 33.333 0.00 0.00 0.00 3.58
1906 1984 9.039870 CACCTCTCTCTTCATTAAATATGTGTC 57.960 37.037 0.00 0.00 0.00 3.67
1911 1989 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
1912 1990 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
1914 1992 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
1915 1993 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
1916 1994 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
1917 1995 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
1918 1996 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
1921 1999 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
1922 2000 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
1923 2001 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
1924 2002 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
1925 2003 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
1926 2004 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
1927 2005 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
1929 2007 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
1930 2008 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
1940 2018 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
1942 2020 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
1943 2021 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
1944 2022 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
1946 2024 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
1947 2025 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
1949 2027 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
1950 2028 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
1952 2030 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
1953 2031 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
1955 2033 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
1956 2034 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
1957 2035 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
1958 2036 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
1959 2037 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
1960 2038 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
1961 2039 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
1962 2040 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
1963 2041 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
1964 2042 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
1965 2043 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
1966 2044 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
1967 2045 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
1968 2046 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
1969 2047 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
1971 2049 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
1972 2050 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
1991 2069 9.114952 TCATGCAACGATGAATTTATTAGGTTA 57.885 29.630 0.00 0.00 29.11 2.85
1993 2071 7.066887 TGTCATGCAACGATGAATTTATTAGGT 59.933 33.333 0.00 0.00 34.11 3.08
1994 2072 7.376866 GTGTCATGCAACGATGAATTTATTAGG 59.623 37.037 0.00 0.00 34.11 2.69
1995 2073 8.124823 AGTGTCATGCAACGATGAATTTATTAG 58.875 33.333 0.00 0.00 34.11 1.73
1997 2075 6.855836 AGTGTCATGCAACGATGAATTTATT 58.144 32.000 0.00 0.00 34.11 1.40
1998 2076 6.441093 AGTGTCATGCAACGATGAATTTAT 57.559 33.333 0.00 0.00 34.11 1.40
1999 2077 5.878332 AGTGTCATGCAACGATGAATTTA 57.122 34.783 0.00 0.00 34.11 1.40
2000 2078 4.771590 AGTGTCATGCAACGATGAATTT 57.228 36.364 0.00 0.00 34.11 1.82
2001 2079 4.694982 TGTAGTGTCATGCAACGATGAATT 59.305 37.500 0.00 0.00 34.11 2.17
2003 2081 3.658709 TGTAGTGTCATGCAACGATGAA 58.341 40.909 0.00 0.00 34.11 2.57
2004 2082 3.311486 TGTAGTGTCATGCAACGATGA 57.689 42.857 0.00 0.00 0.00 2.92
2006 2084 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
2009 2087 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
2011 2089 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
2013 2091 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
2014 2092 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
2017 2095 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
2018 2096 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
2019 2097 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
2020 2098 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
2021 2099 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
2024 2102 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
2025 2103 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
2026 2104 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
2027 2105 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
2028 2106 3.318313 CCTCCATAGTGGGTAGGAACAT 58.682 50.000 0.00 0.00 38.32 2.71
2029 2107 2.759355 CCTCCATAGTGGGTAGGAACA 58.241 52.381 0.00 0.00 38.32 3.18
2030 2108 1.416772 GCCTCCATAGTGGGTAGGAAC 59.583 57.143 7.67 0.00 38.32 3.62
2031 2109 1.009060 TGCCTCCATAGTGGGTAGGAA 59.991 52.381 7.67 0.00 38.32 3.36
2032 2110 0.639943 TGCCTCCATAGTGGGTAGGA 59.360 55.000 7.67 0.00 38.32 2.94
2034 2112 1.794714 ACTGCCTCCATAGTGGGTAG 58.205 55.000 0.00 0.00 38.32 3.18
2037 2115 1.837439 TGTTACTGCCTCCATAGTGGG 59.163 52.381 0.00 0.00 38.32 4.61
2038 2116 3.845781 ATGTTACTGCCTCCATAGTGG 57.154 47.619 0.00 0.00 39.43 4.00
2041 2119 6.151985 CCTAGACTATGTTACTGCCTCCATAG 59.848 46.154 0.00 0.00 41.50 2.23
2043 2121 4.835615 CCTAGACTATGTTACTGCCTCCAT 59.164 45.833 0.00 0.00 0.00 3.41
2045 2123 3.574826 CCCTAGACTATGTTACTGCCTCC 59.425 52.174 0.00 0.00 0.00 4.30
2047 2125 4.537945 TCCCTAGACTATGTTACTGCCT 57.462 45.455 0.00 0.00 0.00 4.75
2048 2126 4.650131 ACTTCCCTAGACTATGTTACTGCC 59.350 45.833 0.00 0.00 0.00 4.85
2049 2127 5.127356 ACACTTCCCTAGACTATGTTACTGC 59.873 44.000 0.00 0.00 0.00 4.40
2050 2128 6.153000 ACACACTTCCCTAGACTATGTTACTG 59.847 42.308 0.00 0.00 0.00 2.74
2052 2130 6.527057 ACACACTTCCCTAGACTATGTTAC 57.473 41.667 0.00 0.00 0.00 2.50
2053 2131 7.892241 ACTTACACACTTCCCTAGACTATGTTA 59.108 37.037 0.00 0.00 0.00 2.41
2054 2132 6.724905 ACTTACACACTTCCCTAGACTATGTT 59.275 38.462 0.00 0.00 0.00 2.71
2055 2133 6.254522 ACTTACACACTTCCCTAGACTATGT 58.745 40.000 0.00 0.00 0.00 2.29
2056 2134 6.777213 ACTTACACACTTCCCTAGACTATG 57.223 41.667 0.00 0.00 0.00 2.23
2057 2135 8.114743 AGTAACTTACACACTTCCCTAGACTAT 58.885 37.037 1.79 0.00 0.00 2.12
2058 2136 7.465116 AGTAACTTACACACTTCCCTAGACTA 58.535 38.462 1.79 0.00 0.00 2.59
2059 2137 6.313324 AGTAACTTACACACTTCCCTAGACT 58.687 40.000 1.79 0.00 0.00 3.24
2060 2138 6.587206 AGTAACTTACACACTTCCCTAGAC 57.413 41.667 1.79 0.00 0.00 2.59
2062 2140 6.377712 AGCTAGTAACTTACACACTTCCCTAG 59.622 42.308 1.79 0.00 0.00 3.02
2063 2141 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
2066 2144 8.033626 ACATAAGCTAGTAACTTACACACTTCC 58.966 37.037 1.79 0.00 32.67 3.46
2067 2145 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
2068 2146 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
2069 2147 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
2072 2150 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
2074 2152 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
2076 2154 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
2078 2156 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
2081 2159 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
2082 2160 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
2083 2161 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
2086 2164 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
2087 2165 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
2088 2166 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
2089 2167 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
2091 2169 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
2093 2171 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
2094 2172 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
2095 2173 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
2096 2174 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
2097 2175 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
2098 2176 2.026641 CATAAGGCTGGTCACAATGGG 58.973 52.381 0.00 0.00 0.00 4.00
2099 2177 1.406539 GCATAAGGCTGGTCACAATGG 59.593 52.381 0.00 0.00 40.25 3.16
2100 2178 2.857592 GCATAAGGCTGGTCACAATG 57.142 50.000 0.00 0.00 40.25 2.82
2111 2189 2.284190 GAACTCTGGTGAGCATAAGGC 58.716 52.381 0.00 0.00 43.85 4.35
2112 2190 2.166459 TCGAACTCTGGTGAGCATAAGG 59.834 50.000 0.00 0.00 43.85 2.69
2113 2191 3.443037 CTCGAACTCTGGTGAGCATAAG 58.557 50.000 0.00 0.00 43.85 1.73
2142 3067 4.216257 TGTGAGAGTTTCAGGCTAATTTGC 59.784 41.667 3.03 3.03 36.21 3.68
2143 3068 5.618640 GCTGTGAGAGTTTCAGGCTAATTTG 60.619 44.000 0.00 0.00 36.21 2.32
2151 3076 2.300152 TGGTAGCTGTGAGAGTTTCAGG 59.700 50.000 0.00 0.00 36.21 3.86
2174 3099 6.402550 GCAGTTAACAGTAACCACATCATGAG 60.403 42.308 8.61 0.00 40.55 2.90
2220 3145 7.378966 TCGACAGAGATAACACAGAAAAGATT 58.621 34.615 0.00 0.00 0.00 2.40
2224 3149 7.962964 AAATCGACAGAGATAACACAGAAAA 57.037 32.000 0.00 0.00 0.00 2.29
2231 3156 9.121658 AGTGACTATAAATCGACAGAGATAACA 57.878 33.333 0.00 0.00 0.00 2.41
2249 3174 8.571336 CAATTGAAAAGGTTTCTGAGTGACTAT 58.429 33.333 0.00 0.00 0.00 2.12
2254 3179 5.594926 AGCAATTGAAAAGGTTTCTGAGTG 58.405 37.500 10.34 2.77 0.00 3.51
2323 3249 0.178992 CACTGCAGAAGGGGGTTTCA 60.179 55.000 23.35 0.00 0.00 2.69
2460 3386 1.926511 CTGGCCTTGAACACATCGGC 61.927 60.000 3.32 0.00 39.98 5.54
2462 3388 0.518636 CACTGGCCTTGAACACATCG 59.481 55.000 3.32 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.