Multiple sequence alignment - TraesCS1B01G300800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G300800 chr1B 100.000 2312 0 0 1 2312 521351439 521353750 0.000000e+00 4270
1 TraesCS1B01G300800 chr1B 91.903 741 36 11 917 1639 521740733 521741467 0.000000e+00 1014
2 TraesCS1B01G300800 chr1B 89.446 578 50 6 744 1314 521766689 521767262 0.000000e+00 719
3 TraesCS1B01G300800 chr1B 84.524 168 10 5 1802 1963 521741701 521741858 3.980000e-33 152
4 TraesCS1B01G300800 chr1D 86.012 1680 151 49 1 1639 388023621 388025257 0.000000e+00 1724
5 TraesCS1B01G300800 chr1D 89.381 565 57 3 768 1329 63682310 63681746 0.000000e+00 708
6 TraesCS1B01G300800 chr1D 88.372 129 5 3 1802 1924 388025491 388025615 1.850000e-31 147
7 TraesCS1B01G300800 chr1A 87.125 1468 120 33 542 1963 487568270 487569714 0.000000e+00 1600
8 TraesCS1B01G300800 chr1A 91.182 567 41 6 771 1329 490418084 490418649 0.000000e+00 761
9 TraesCS1B01G300800 chr1A 89.983 579 50 6 743 1314 487571058 487571635 0.000000e+00 741
10 TraesCS1B01G300800 chr1A 90.123 567 49 5 769 1329 490759833 490760398 0.000000e+00 730
11 TraesCS1B01G300800 chr1A 85.956 413 51 6 1 409 487555616 487556025 3.530000e-118 435
12 TraesCS1B01G300800 chr6B 90.052 573 47 8 768 1332 679983654 679983084 0.000000e+00 734
13 TraesCS1B01G300800 chr6B 88.788 330 19 6 2001 2312 702198652 702198323 2.790000e-104 388
14 TraesCS1B01G300800 chr7B 89.329 328 17 6 2001 2310 697865168 697864841 1.660000e-106 396
15 TraesCS1B01G300800 chr5A 88.253 332 19 6 2000 2312 673677713 673678043 1.680000e-101 379
16 TraesCS1B01G300800 chr5A 85.801 331 29 3 2000 2312 475600622 475600292 3.680000e-88 335
17 TraesCS1B01G300800 chr4A 87.613 331 23 6 2000 2312 506703776 506703446 3.630000e-98 368
18 TraesCS1B01G300800 chr4A 86.687 323 25 9 2008 2312 739440461 739440139 2.200000e-90 342
19 TraesCS1B01G300800 chrUn 86.103 331 28 5 2000 2312 240121365 240121035 7.910000e-90 340
20 TraesCS1B01G300800 chrUn 86.103 331 28 5 2000 2312 404914012 404914342 7.910000e-90 340
21 TraesCS1B01G300800 chr2B 86.103 331 28 5 2000 2312 77825462 77825132 7.910000e-90 340
22 TraesCS1B01G300800 chr2B 82.243 321 45 6 2001 2309 683592893 683592573 1.360000e-67 267
23 TraesCS1B01G300800 chr7D 80.247 324 46 7 2004 2309 5667324 5667647 6.430000e-56 228
24 TraesCS1B01G300800 chr5D 79.692 325 46 7 2004 2309 29157395 29157718 1.390000e-52 217
25 TraesCS1B01G300800 chr4D 80.822 292 36 8 2037 2309 401951704 401951994 6.470000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G300800 chr1B 521351439 521353750 2311 False 4270.0 4270 100.0000 1 2312 1 chr1B.!!$F1 2311
1 TraesCS1B01G300800 chr1B 521766689 521767262 573 False 719.0 719 89.4460 744 1314 1 chr1B.!!$F2 570
2 TraesCS1B01G300800 chr1B 521740733 521741858 1125 False 583.0 1014 88.2135 917 1963 2 chr1B.!!$F3 1046
3 TraesCS1B01G300800 chr1D 388023621 388025615 1994 False 935.5 1724 87.1920 1 1924 2 chr1D.!!$F1 1923
4 TraesCS1B01G300800 chr1D 63681746 63682310 564 True 708.0 708 89.3810 768 1329 1 chr1D.!!$R1 561
5 TraesCS1B01G300800 chr1A 487568270 487571635 3365 False 1170.5 1600 88.5540 542 1963 2 chr1A.!!$F4 1421
6 TraesCS1B01G300800 chr1A 490418084 490418649 565 False 761.0 761 91.1820 771 1329 1 chr1A.!!$F2 558
7 TraesCS1B01G300800 chr1A 490759833 490760398 565 False 730.0 730 90.1230 769 1329 1 chr1A.!!$F3 560
8 TraesCS1B01G300800 chr6B 679983084 679983654 570 True 734.0 734 90.0520 768 1332 1 chr6B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 945 0.035247 CGTCCCCGTTAAAATCCCCA 60.035 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2299 0.03213 GTCACTTCGTCTCAGCACCA 59.968 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 3.243805 GGGTAAGAGACTCCGGATAAAGC 60.244 52.174 3.57 0.00 0.00 3.51
34 36 4.438346 CGGATAAAGCCCACTCCG 57.562 61.111 1.63 1.63 43.98 4.63
75 77 4.334118 TCGACCCCTCCGACGACA 62.334 66.667 0.00 0.00 0.00 4.35
78 80 3.292500 GACCCCTCCGACGACAACC 62.293 68.421 0.00 0.00 0.00 3.77
80 82 2.738480 CCCTCCGACGACAACCAA 59.262 61.111 0.00 0.00 0.00 3.67
97 99 1.660575 AACGTCGCGACAAGGACTG 60.661 57.895 35.71 21.05 0.00 3.51
98 100 3.470567 CGTCGCGACAAGGACTGC 61.471 66.667 35.71 8.76 0.00 4.40
100 102 1.954146 GTCGCGACAAGGACTGCAA 60.954 57.895 33.09 0.00 0.00 4.08
120 122 6.658849 TGCAACTAGCTCTTAATTTATCCCA 58.341 36.000 0.00 0.00 45.94 4.37
122 124 7.067008 TGCAACTAGCTCTTAATTTATCCCAAC 59.933 37.037 0.00 0.00 45.94 3.77
123 125 7.067008 GCAACTAGCTCTTAATTTATCCCAACA 59.933 37.037 0.00 0.00 41.15 3.33
129 131 8.275040 AGCTCTTAATTTATCCCAACATAGTGT 58.725 33.333 0.00 0.00 0.00 3.55
180 182 9.071221 TCGTTAATAATGTTCAACATTTCATGC 57.929 29.630 20.74 8.47 45.80 4.06
181 183 9.075519 CGTTAATAATGTTCAACATTTCATGCT 57.924 29.630 20.74 0.00 45.80 3.79
186 188 7.458409 AATGTTCAACATTTCATGCTAGAGT 57.542 32.000 10.14 0.00 45.80 3.24
187 189 6.486253 TGTTCAACATTTCATGCTAGAGTC 57.514 37.500 0.00 0.00 0.00 3.36
188 190 5.120674 TGTTCAACATTTCATGCTAGAGTCG 59.879 40.000 0.00 0.00 0.00 4.18
275 277 4.114794 CAACTTTTGGTCTGCTGGAAAAG 58.885 43.478 15.35 15.35 39.99 2.27
316 320 9.804758 GATACTTAAAACCTATATCTCCATCCG 57.195 37.037 0.00 0.00 0.00 4.18
317 321 6.465084 ACTTAAAACCTATATCTCCATCCGC 58.535 40.000 0.00 0.00 0.00 5.54
319 323 4.974645 AAACCTATATCTCCATCCGCAA 57.025 40.909 0.00 0.00 0.00 4.85
348 353 7.147742 ACAGTTTTTGTCATCAAATTACAGGGT 60.148 33.333 0.00 0.00 42.14 4.34
350 355 7.710475 AGTTTTTGTCATCAAATTACAGGGTTG 59.290 33.333 0.00 0.00 42.14 3.77
354 359 5.596361 TGTCATCAAATTACAGGGTTGTTGT 59.404 36.000 0.00 0.00 38.76 3.32
356 361 7.285629 TGTCATCAAATTACAGGGTTGTTGTTA 59.714 33.333 0.00 0.00 38.76 2.41
363 368 4.584327 ACAGGGTTGTTGTTAAAGATGC 57.416 40.909 0.00 0.00 32.28 3.91
391 396 8.948853 TTAATCAATATGCTATTTGTAAGCGC 57.051 30.769 0.00 0.00 43.11 5.92
438 443 8.477419 TTTTATCAGACCAATGGAAAAGTTCT 57.523 30.769 6.16 0.00 0.00 3.01
439 444 9.581289 TTTTATCAGACCAATGGAAAAGTTCTA 57.419 29.630 6.16 0.00 0.00 2.10
440 445 9.581289 TTTATCAGACCAATGGAAAAGTTCTAA 57.419 29.630 6.16 0.00 0.00 2.10
441 446 9.753674 TTATCAGACCAATGGAAAAGTTCTAAT 57.246 29.630 6.16 0.00 0.00 1.73
442 447 7.687941 TCAGACCAATGGAAAAGTTCTAATC 57.312 36.000 6.16 0.00 0.00 1.75
448 453 7.671398 ACCAATGGAAAAGTTCTAATCTCACAT 59.329 33.333 6.16 0.00 0.00 3.21
451 456 9.965902 AATGGAAAAGTTCTAATCTCACATAGT 57.034 29.630 0.00 0.00 0.00 2.12
459 464 9.778741 AGTTCTAATCTCACATAGTTTTCAACA 57.221 29.630 0.00 0.00 0.00 3.33
494 501 8.641541 ACATGTTAAGTCCATTTGAATTTGACT 58.358 29.630 0.00 0.00 37.88 3.41
495 502 8.918658 CATGTTAAGTCCATTTGAATTTGACTG 58.081 33.333 6.48 0.00 36.47 3.51
527 534 6.910191 TGGTACAATGGAGATATTTGATGGT 58.090 36.000 0.00 0.00 31.92 3.55
529 536 7.936847 TGGTACAATGGAGATATTTGATGGTAC 59.063 37.037 0.00 0.00 31.92 3.34
530 537 7.117812 GGTACAATGGAGATATTTGATGGTACG 59.882 40.741 0.00 0.00 0.00 3.67
531 538 6.826668 ACAATGGAGATATTTGATGGTACGA 58.173 36.000 0.00 0.00 0.00 3.43
532 539 7.453393 ACAATGGAGATATTTGATGGTACGAT 58.547 34.615 0.00 0.00 0.00 3.73
533 540 7.388776 ACAATGGAGATATTTGATGGTACGATG 59.611 37.037 0.00 0.00 0.00 3.84
534 541 5.793817 TGGAGATATTTGATGGTACGATGG 58.206 41.667 0.00 0.00 0.00 3.51
537 544 6.934645 GGAGATATTTGATGGTACGATGGAAA 59.065 38.462 0.00 0.00 0.00 3.13
538 545 7.118390 GGAGATATTTGATGGTACGATGGAAAG 59.882 40.741 0.00 0.00 0.00 2.62
540 547 8.378565 AGATATTTGATGGTACGATGGAAAGAT 58.621 33.333 0.00 0.00 0.00 2.40
541 548 6.624352 ATTTGATGGTACGATGGAAAGATG 57.376 37.500 0.00 0.00 0.00 2.90
542 549 5.351948 TTGATGGTACGATGGAAAGATGA 57.648 39.130 0.00 0.00 0.00 2.92
544 551 3.179443 TGGTACGATGGAAAGATGAGC 57.821 47.619 0.00 0.00 0.00 4.26
545 552 2.158957 TGGTACGATGGAAAGATGAGCC 60.159 50.000 0.00 0.00 0.00 4.70
547 554 0.824109 ACGATGGAAAGATGAGCCGA 59.176 50.000 0.00 0.00 0.00 5.54
548 555 1.207089 ACGATGGAAAGATGAGCCGAA 59.793 47.619 0.00 0.00 0.00 4.30
549 556 1.863454 CGATGGAAAGATGAGCCGAAG 59.137 52.381 0.00 0.00 0.00 3.79
558 584 1.207329 GATGAGCCGAAGTTGGGTACT 59.793 52.381 5.75 0.00 40.53 2.73
569 595 5.562113 CGAAGTTGGGTACTGAAATTGTTCC 60.562 44.000 0.00 0.00 37.12 3.62
603 629 4.020573 TCAATATCACCAGTTGTCGTTCCT 60.021 41.667 0.00 0.00 0.00 3.36
624 650 0.815213 GTCATGCATGCCTTCCGCTA 60.815 55.000 22.25 0.00 38.78 4.26
665 691 6.633634 CACAGCAAAATTTGAATTCGCAAAAT 59.366 30.769 10.26 0.00 40.72 1.82
666 692 7.797587 CACAGCAAAATTTGAATTCGCAAAATA 59.202 29.630 10.26 0.00 40.72 1.40
667 693 7.798052 ACAGCAAAATTTGAATTCGCAAAATAC 59.202 29.630 10.26 0.00 40.72 1.89
668 694 7.005505 CAGCAAAATTTGAATTCGCAAAATACG 59.994 33.333 10.26 0.00 40.72 3.06
669 695 6.789877 GCAAAATTTGAATTCGCAAAATACGT 59.210 30.769 10.26 0.00 40.72 3.57
677 703 7.976826 TGAATTCGCAAAATACGTATAAAGGT 58.023 30.769 8.83 0.00 0.00 3.50
702 728 2.743718 CAGAACCCTGCGACCAGT 59.256 61.111 0.00 0.00 37.38 4.00
817 848 2.356313 ATCATCGATCCGCGGCAC 60.356 61.111 23.51 15.75 41.33 5.01
852 884 0.321671 CCATCTTGACCGTCCACTGT 59.678 55.000 0.00 0.00 0.00 3.55
912 945 0.035247 CGTCCCCGTTAAAATCCCCA 60.035 55.000 0.00 0.00 0.00 4.96
922 957 0.784154 AAAATCCCCACCCCCTTCCT 60.784 55.000 0.00 0.00 0.00 3.36
966 1012 1.690633 GCTCCTCCACCTCCATCCA 60.691 63.158 0.00 0.00 0.00 3.41
987 1033 2.359230 GCAGCTCGAACCAAGGCT 60.359 61.111 0.00 0.00 35.23 4.58
1416 1466 7.840716 TGAAATGAATTCCCCATGTTTATCTCT 59.159 33.333 2.27 0.00 37.22 3.10
1418 1468 6.325993 TGAATTCCCCATGTTTATCTCTGA 57.674 37.500 2.27 0.00 0.00 3.27
1426 1476 7.127186 TCCCCATGTTTATCTCTGATGTTTCTA 59.873 37.037 0.00 0.00 0.00 2.10
1427 1477 7.775093 CCCCATGTTTATCTCTGATGTTTCTAA 59.225 37.037 0.00 0.00 0.00 2.10
1438 1489 9.922477 TCTCTGATGTTTCTAAGTAGGATTAGA 57.078 33.333 0.00 0.00 39.45 2.10
1465 1516 1.204312 GAAACGAAGCTGGTCGCAC 59.796 57.895 7.71 0.00 45.00 5.34
1508 1564 3.126171 TGTGTCTACGCAAATATTGTGGC 59.874 43.478 8.34 0.00 45.14 5.01
1511 1567 3.374058 GTCTACGCAAATATTGTGGCTGT 59.626 43.478 8.34 0.44 45.14 4.40
1512 1568 2.634982 ACGCAAATATTGTGGCTGTG 57.365 45.000 8.34 0.00 45.14 3.66
1513 1569 1.202114 ACGCAAATATTGTGGCTGTGG 59.798 47.619 8.34 0.00 45.14 4.17
1514 1570 1.202114 CGCAAATATTGTGGCTGTGGT 59.798 47.619 0.00 0.00 37.51 4.16
1515 1571 2.352617 CGCAAATATTGTGGCTGTGGTT 60.353 45.455 0.00 0.00 37.51 3.67
1516 1572 3.663025 GCAAATATTGTGGCTGTGGTTT 58.337 40.909 0.00 0.00 0.00 3.27
1540 1602 1.068610 TGTGATTTTTACTGCTGCGCC 60.069 47.619 4.18 0.00 0.00 6.53
1586 1657 4.161189 TGTTCCTTTGCAAGATTTGGTTGA 59.839 37.500 0.00 0.00 0.00 3.18
1631 1702 0.532573 TCCCGAGTTCAGTCTGCATC 59.467 55.000 0.00 0.00 0.00 3.91
1668 1828 1.626321 TGCCATTCTTGAACGGGTCTA 59.374 47.619 0.00 0.00 0.00 2.59
1720 1894 2.036733 CCGTGTCAGTAACCAGGAAAGA 59.963 50.000 0.00 0.00 0.00 2.52
1730 1904 3.806949 ACCAGGAAAGACCATTTGCTA 57.193 42.857 0.00 0.00 42.04 3.49
1737 1911 7.286316 CCAGGAAAGACCATTTGCTATATTTCT 59.714 37.037 0.00 0.00 42.04 2.52
1738 1912 8.689972 CAGGAAAGACCATTTGCTATATTTCTT 58.310 33.333 0.00 0.00 42.04 2.52
1739 1913 8.907885 AGGAAAGACCATTTGCTATATTTCTTC 58.092 33.333 0.00 0.00 42.04 2.87
1740 1914 8.907885 GGAAAGACCATTTGCTATATTTCTTCT 58.092 33.333 0.00 0.00 38.79 2.85
1766 1940 5.499139 TTTCTGTGACTGTGGAAATGTTC 57.501 39.130 0.00 0.00 0.00 3.18
1767 1941 4.149511 TCTGTGACTGTGGAAATGTTCA 57.850 40.909 0.00 0.00 0.00 3.18
1774 1948 3.011566 TGTGGAAATGTTCACAGTGGT 57.988 42.857 0.00 0.00 38.75 4.16
1775 1949 4.157849 TGTGGAAATGTTCACAGTGGTA 57.842 40.909 0.00 0.00 38.75 3.25
1776 1950 4.724399 TGTGGAAATGTTCACAGTGGTAT 58.276 39.130 0.00 0.00 38.75 2.73
1777 1951 4.518590 TGTGGAAATGTTCACAGTGGTATG 59.481 41.667 0.00 0.00 38.75 2.39
1778 1952 4.518970 GTGGAAATGTTCACAGTGGTATGT 59.481 41.667 0.00 0.00 34.32 2.29
1784 1958 5.493133 TGTTCACAGTGGTATGTTGAAAC 57.507 39.130 0.00 0.00 0.00 2.78
1798 1972 7.432252 GGTATGTTGAAACATTAGCAGCAATAC 59.568 37.037 13.53 2.71 46.95 1.89
1803 1999 6.934056 TGAAACATTAGCAGCAATACCATTT 58.066 32.000 0.00 0.00 0.00 2.32
1912 2118 0.677731 TGATGCCCTTACAGCAGTGC 60.678 55.000 7.13 7.13 44.90 4.40
1924 2130 2.103042 GCAGTGCGTTAGAGCCAGG 61.103 63.158 0.00 0.00 36.02 4.45
1925 2131 1.448540 CAGTGCGTTAGAGCCAGGG 60.449 63.158 0.00 0.00 36.02 4.45
1926 2132 2.820037 GTGCGTTAGAGCCAGGGC 60.820 66.667 0.97 0.97 42.33 5.19
1927 2133 4.096003 TGCGTTAGAGCCAGGGCC 62.096 66.667 6.70 0.00 43.17 5.80
1928 2134 4.096003 GCGTTAGAGCCAGGGCCA 62.096 66.667 6.18 0.00 43.17 5.36
1929 2135 2.187946 CGTTAGAGCCAGGGCCAG 59.812 66.667 6.18 0.00 43.17 4.85
1930 2136 2.359169 CGTTAGAGCCAGGGCCAGA 61.359 63.158 6.18 0.00 43.17 3.86
1931 2137 1.524482 GTTAGAGCCAGGGCCAGAG 59.476 63.158 6.18 0.00 43.17 3.35
1946 2152 1.152368 AGAGCCAGCAAAAGCCTGT 59.848 52.632 0.00 0.00 0.00 4.00
1952 2158 2.755103 GCCAGCAAAAGCCTGTATTAGT 59.245 45.455 0.00 0.00 0.00 2.24
1999 2240 2.496070 AGGTGTCAAGTAGCGAGCAATA 59.504 45.455 0.00 0.00 0.00 1.90
2003 2244 2.281762 GTCAAGTAGCGAGCAATAACCG 59.718 50.000 0.00 0.00 0.00 4.44
2009 2250 2.456000 CGAGCAATAACCGCACTGT 58.544 52.632 0.00 0.00 0.00 3.55
2018 2259 2.880879 CCGCACTGTCGGTCGATG 60.881 66.667 9.54 0.00 44.18 3.84
2019 2260 2.880879 CGCACTGTCGGTCGATGG 60.881 66.667 0.00 0.00 0.00 3.51
2021 2262 2.094659 GCACTGTCGGTCGATGGTG 61.095 63.158 17.35 17.35 34.84 4.17
2022 2263 2.094659 CACTGTCGGTCGATGGTGC 61.095 63.158 12.58 0.00 0.00 5.01
2023 2264 2.276116 ACTGTCGGTCGATGGTGCT 61.276 57.895 0.00 0.00 0.00 4.40
2024 2265 1.079819 CTGTCGGTCGATGGTGCTT 60.080 57.895 0.00 0.00 0.00 3.91
2025 2266 0.670546 CTGTCGGTCGATGGTGCTTT 60.671 55.000 0.00 0.00 0.00 3.51
2026 2267 0.250124 TGTCGGTCGATGGTGCTTTT 60.250 50.000 0.00 0.00 0.00 2.27
2027 2268 0.872388 GTCGGTCGATGGTGCTTTTT 59.128 50.000 0.00 0.00 0.00 1.94
2028 2269 1.136057 GTCGGTCGATGGTGCTTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
2029 2270 0.179225 CGGTCGATGGTGCTTTTTCG 60.179 55.000 0.00 0.00 0.00 3.46
2030 2271 0.168128 GGTCGATGGTGCTTTTTCGG 59.832 55.000 0.00 0.00 32.67 4.30
2032 2273 1.128692 GTCGATGGTGCTTTTTCGGAG 59.871 52.381 0.00 0.00 32.67 4.63
2033 2274 0.447801 CGATGGTGCTTTTTCGGAGG 59.552 55.000 0.00 0.00 0.00 4.30
2035 2276 1.586154 ATGGTGCTTTTTCGGAGGCG 61.586 55.000 0.00 0.00 0.00 5.52
2036 2277 2.561373 GTGCTTTTTCGGAGGCGG 59.439 61.111 0.00 0.00 0.00 6.13
2037 2278 1.964373 GTGCTTTTTCGGAGGCGGA 60.964 57.895 0.00 0.00 0.00 5.54
2039 2280 1.305219 TGCTTTTTCGGAGGCGGATG 61.305 55.000 0.00 0.00 0.00 3.51
2040 2281 1.993369 GCTTTTTCGGAGGCGGATGG 61.993 60.000 0.00 0.00 0.00 3.51
2041 2282 0.392461 CTTTTTCGGAGGCGGATGGA 60.392 55.000 0.00 0.00 0.00 3.41
2042 2283 0.254747 TTTTTCGGAGGCGGATGGAT 59.745 50.000 0.00 0.00 0.00 3.41
2043 2284 0.179056 TTTTCGGAGGCGGATGGATC 60.179 55.000 0.00 0.00 0.00 3.36
2045 2286 1.748329 TTCGGAGGCGGATGGATCAG 61.748 60.000 0.00 0.00 0.00 2.90
2046 2287 2.031768 GGAGGCGGATGGATCAGC 59.968 66.667 3.42 3.42 45.36 4.26
2051 2292 2.252346 GCGGATGGATCAGCAGCAG 61.252 63.158 6.85 0.00 45.40 4.24
2052 2293 2.252346 CGGATGGATCAGCAGCAGC 61.252 63.158 0.00 0.00 42.56 5.25
2068 2309 3.785859 GCGGGGATGGTGCTGAGA 61.786 66.667 0.00 0.00 0.00 3.27
2069 2310 2.187946 CGGGGATGGTGCTGAGAC 59.812 66.667 0.00 0.00 0.00 3.36
2070 2311 2.187946 GGGGATGGTGCTGAGACG 59.812 66.667 0.00 0.00 0.00 4.18
2071 2312 2.359169 GGGGATGGTGCTGAGACGA 61.359 63.158 0.00 0.00 0.00 4.20
2072 2313 1.596934 GGGATGGTGCTGAGACGAA 59.403 57.895 0.00 0.00 0.00 3.85
2086 2327 1.208614 ACGAAGTGACGGTAGCGTC 59.791 57.895 34.12 34.12 42.51 5.19
2093 2334 1.990799 TGACGGTAGCGTCATCTTTG 58.009 50.000 38.04 1.11 42.96 2.77
2094 2335 0.645868 GACGGTAGCGTCATCTTTGC 59.354 55.000 35.27 12.05 38.62 3.68
2095 2336 0.037697 ACGGTAGCGTCATCTTTGCA 60.038 50.000 15.34 0.00 0.00 4.08
2096 2337 0.647410 CGGTAGCGTCATCTTTGCAG 59.353 55.000 6.07 0.00 0.00 4.41
2097 2338 0.375106 GGTAGCGTCATCTTTGCAGC 59.625 55.000 0.00 0.00 0.00 5.25
2099 2340 0.389817 TAGCGTCATCTTTGCAGCGT 60.390 50.000 0.00 0.00 32.60 5.07
2100 2341 1.510623 GCGTCATCTTTGCAGCGTG 60.511 57.895 0.00 0.00 0.00 5.34
2101 2342 1.862123 CGTCATCTTTGCAGCGTGT 59.138 52.632 0.00 0.00 0.00 4.49
2102 2343 0.179240 CGTCATCTTTGCAGCGTGTC 60.179 55.000 0.00 0.00 0.00 3.67
2103 2344 0.179240 GTCATCTTTGCAGCGTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
2104 2345 1.133253 CATCTTTGCAGCGTGTCGG 59.867 57.895 0.00 0.00 0.00 4.79
2105 2346 1.301716 ATCTTTGCAGCGTGTCGGT 60.302 52.632 0.00 0.00 38.40 4.69
2114 2355 2.157834 AGCGTGTCGGTGTATTTTCA 57.842 45.000 0.00 0.00 35.85 2.69
2117 2358 2.222445 GCGTGTCGGTGTATTTTCAACT 59.778 45.455 0.00 0.00 0.00 3.16
2118 2359 3.794536 CGTGTCGGTGTATTTTCAACTG 58.205 45.455 0.00 0.00 0.00 3.16
2119 2360 3.551551 GTGTCGGTGTATTTTCAACTGC 58.448 45.455 0.00 0.00 0.00 4.40
2122 2363 4.277174 TGTCGGTGTATTTTCAACTGCAAT 59.723 37.500 0.00 0.00 0.00 3.56
2123 2364 4.616802 GTCGGTGTATTTTCAACTGCAATG 59.383 41.667 0.00 0.00 0.00 2.82
2125 2366 4.616802 CGGTGTATTTTCAACTGCAATGAC 59.383 41.667 1.51 0.00 0.00 3.06
2130 2755 0.537143 TTCAACTGCAATGACGCCCT 60.537 50.000 1.51 0.00 0.00 5.19
2131 2756 0.323302 TCAACTGCAATGACGCCCTA 59.677 50.000 0.00 0.00 0.00 3.53
2132 2757 0.729116 CAACTGCAATGACGCCCTAG 59.271 55.000 0.00 0.00 0.00 3.02
2137 2762 0.462759 GCAATGACGCCCTAGAAGCT 60.463 55.000 0.00 0.00 0.00 3.74
2138 2763 1.293924 CAATGACGCCCTAGAAGCTG 58.706 55.000 0.00 0.00 0.00 4.24
2139 2764 1.134699 CAATGACGCCCTAGAAGCTGA 60.135 52.381 0.00 0.00 0.00 4.26
2141 2766 0.246635 TGACGCCCTAGAAGCTGAAC 59.753 55.000 0.00 0.00 0.00 3.18
2143 2768 1.749634 GACGCCCTAGAAGCTGAACTA 59.250 52.381 0.00 0.00 0.00 2.24
2145 2770 1.476891 CGCCCTAGAAGCTGAACTACA 59.523 52.381 0.00 0.00 0.00 2.74
2158 2783 3.333804 TGAACTACATGCTCGAATGCAA 58.666 40.909 3.24 0.00 46.61 4.08
2161 2786 1.600957 CTACATGCTCGAATGCAAGGG 59.399 52.381 3.24 0.03 46.61 3.95
2162 2787 0.035152 ACATGCTCGAATGCAAGGGA 60.035 50.000 3.24 0.00 46.61 4.20
2163 2788 1.315690 CATGCTCGAATGCAAGGGAT 58.684 50.000 3.24 0.00 46.61 3.85
2164 2789 1.001706 CATGCTCGAATGCAAGGGATG 60.002 52.381 3.24 0.00 46.61 3.51
2165 2790 0.749091 TGCTCGAATGCAAGGGATGG 60.749 55.000 0.00 0.00 40.29 3.51
2166 2791 2.028130 CTCGAATGCAAGGGATGGC 58.972 57.895 0.00 0.00 0.00 4.40
2167 2792 0.749091 CTCGAATGCAAGGGATGGCA 60.749 55.000 0.00 0.00 45.23 4.92
2168 2793 1.031571 TCGAATGCAAGGGATGGCAC 61.032 55.000 0.00 0.00 43.75 5.01
2169 2794 1.033746 CGAATGCAAGGGATGGCACT 61.034 55.000 0.00 0.00 43.75 4.40
2170 2795 1.188863 GAATGCAAGGGATGGCACTT 58.811 50.000 0.00 0.00 43.75 3.16
2177 2802 2.062971 AGGGATGGCACTTGCTATTG 57.937 50.000 1.22 0.00 42.46 1.90
2178 2803 1.565759 AGGGATGGCACTTGCTATTGA 59.434 47.619 1.22 0.00 42.46 2.57
2179 2804 1.952296 GGGATGGCACTTGCTATTGAG 59.048 52.381 1.22 0.00 42.46 3.02
2192 2817 2.534298 CTATTGAGCACGGTGAGACTG 58.466 52.381 13.29 0.00 0.00 3.51
2193 2818 0.969149 ATTGAGCACGGTGAGACTGA 59.031 50.000 13.29 0.00 0.00 3.41
2195 2820 0.969149 TGAGCACGGTGAGACTGATT 59.031 50.000 13.29 0.00 0.00 2.57
2197 2822 0.109086 AGCACGGTGAGACTGATTCG 60.109 55.000 13.29 0.00 0.00 3.34
2198 2823 0.388649 GCACGGTGAGACTGATTCGT 60.389 55.000 13.29 0.00 0.00 3.85
2199 2824 1.618861 CACGGTGAGACTGATTCGTC 58.381 55.000 0.74 1.89 0.00 4.20
2200 2825 1.068541 CACGGTGAGACTGATTCGTCA 60.069 52.381 0.74 0.00 36.38 4.35
2201 2826 1.200252 ACGGTGAGACTGATTCGTCAG 59.800 52.381 4.01 4.01 43.03 3.51
2202 2827 1.468914 CGGTGAGACTGATTCGTCAGA 59.531 52.381 12.01 0.00 39.99 3.27
2203 2828 2.095212 CGGTGAGACTGATTCGTCAGAA 60.095 50.000 12.01 0.00 39.99 3.02
2204 2829 3.506810 GGTGAGACTGATTCGTCAGAAG 58.493 50.000 12.01 0.00 40.09 2.85
2205 2830 2.920490 GTGAGACTGATTCGTCAGAAGC 59.080 50.000 12.01 2.08 42.66 3.86
2206 2831 2.822561 TGAGACTGATTCGTCAGAAGCT 59.177 45.455 12.01 6.27 42.77 3.74
2207 2832 3.256879 TGAGACTGATTCGTCAGAAGCTT 59.743 43.478 12.01 0.00 42.77 3.74
2209 2834 4.241681 AGACTGATTCGTCAGAAGCTTTC 58.758 43.478 12.01 0.00 42.77 2.62
2210 2835 3.990469 GACTGATTCGTCAGAAGCTTTCA 59.010 43.478 12.01 0.00 42.77 2.69
2212 2837 4.391216 ACTGATTCGTCAGAAGCTTTCATG 59.609 41.667 12.01 0.32 42.77 3.07
2213 2838 3.686241 TGATTCGTCAGAAGCTTTCATGG 59.314 43.478 0.00 0.00 42.77 3.66
2214 2839 1.442769 TCGTCAGAAGCTTTCATGGC 58.557 50.000 0.00 0.87 0.00 4.40
2215 2840 1.159285 CGTCAGAAGCTTTCATGGCA 58.841 50.000 0.00 0.00 0.00 4.92
2220 2845 3.442625 TCAGAAGCTTTCATGGCATTGAG 59.557 43.478 0.00 0.00 0.00 3.02
2221 2846 3.442625 CAGAAGCTTTCATGGCATTGAGA 59.557 43.478 0.00 0.00 0.00 3.27
2222 2847 3.695060 AGAAGCTTTCATGGCATTGAGAG 59.305 43.478 0.00 5.29 32.47 3.20
2223 2848 2.376109 AGCTTTCATGGCATTGAGAGG 58.624 47.619 0.00 0.00 30.56 3.69
2224 2849 1.407979 GCTTTCATGGCATTGAGAGGG 59.592 52.381 0.00 0.00 30.56 4.30
2226 2851 1.297968 TTCATGGCATTGAGAGGGGA 58.702 50.000 0.00 0.00 0.00 4.81
2227 2852 0.548031 TCATGGCATTGAGAGGGGAC 59.452 55.000 0.00 0.00 0.00 4.46
2228 2853 0.256752 CATGGCATTGAGAGGGGACA 59.743 55.000 0.00 0.00 0.00 4.02
2230 2855 1.002069 TGGCATTGAGAGGGGACAAT 58.998 50.000 0.00 0.00 37.22 2.71
2231 2856 1.064463 TGGCATTGAGAGGGGACAATC 60.064 52.381 0.00 0.00 35.01 2.67
2232 2857 1.213926 GGCATTGAGAGGGGACAATCT 59.786 52.381 0.00 0.00 35.01 2.40
2233 2858 2.357569 GGCATTGAGAGGGGACAATCTT 60.358 50.000 0.00 0.00 35.01 2.40
2234 2859 2.948315 GCATTGAGAGGGGACAATCTTC 59.052 50.000 0.00 0.00 35.01 2.87
2235 2860 3.201290 CATTGAGAGGGGACAATCTTCG 58.799 50.000 0.00 0.00 35.01 3.79
2236 2861 1.195115 TGAGAGGGGACAATCTTCGG 58.805 55.000 0.00 0.00 0.00 4.30
2237 2862 1.196012 GAGAGGGGACAATCTTCGGT 58.804 55.000 0.00 0.00 0.00 4.69
2241 2866 3.388350 AGAGGGGACAATCTTCGGTATTC 59.612 47.826 0.00 0.00 0.00 1.75
2242 2867 3.385115 AGGGGACAATCTTCGGTATTCT 58.615 45.455 0.00 0.00 0.00 2.40
2243 2868 3.134804 AGGGGACAATCTTCGGTATTCTG 59.865 47.826 0.00 0.00 0.00 3.02
2244 2869 2.872858 GGGACAATCTTCGGTATTCTGC 59.127 50.000 0.00 0.00 0.00 4.26
2245 2870 3.432326 GGGACAATCTTCGGTATTCTGCT 60.432 47.826 0.00 0.00 0.00 4.24
2246 2871 4.192317 GGACAATCTTCGGTATTCTGCTT 58.808 43.478 0.00 0.00 0.00 3.91
2247 2872 5.357257 GGACAATCTTCGGTATTCTGCTTA 58.643 41.667 0.00 0.00 0.00 3.09
2248 2873 5.992217 GGACAATCTTCGGTATTCTGCTTAT 59.008 40.000 0.00 0.00 0.00 1.73
2249 2874 6.073548 GGACAATCTTCGGTATTCTGCTTATG 60.074 42.308 0.00 0.00 0.00 1.90
2250 2875 5.760253 ACAATCTTCGGTATTCTGCTTATGG 59.240 40.000 0.00 0.00 0.00 2.74
2251 2876 5.808366 ATCTTCGGTATTCTGCTTATGGA 57.192 39.130 0.00 0.00 0.00 3.41
2252 2877 4.945246 TCTTCGGTATTCTGCTTATGGAC 58.055 43.478 0.00 0.00 0.00 4.02
2254 2879 4.955811 TCGGTATTCTGCTTATGGACAT 57.044 40.909 0.00 0.00 0.00 3.06
2255 2880 5.290493 TCGGTATTCTGCTTATGGACATT 57.710 39.130 0.00 0.00 0.00 2.71
2256 2881 5.680619 TCGGTATTCTGCTTATGGACATTT 58.319 37.500 0.00 0.00 0.00 2.32
2257 2882 5.527214 TCGGTATTCTGCTTATGGACATTTG 59.473 40.000 0.00 0.00 0.00 2.32
2258 2883 5.277974 CGGTATTCTGCTTATGGACATTTGG 60.278 44.000 0.00 0.00 0.00 3.28
2259 2884 5.594317 GGTATTCTGCTTATGGACATTTGGT 59.406 40.000 0.00 0.00 0.00 3.67
2260 2885 5.587388 ATTCTGCTTATGGACATTTGGTG 57.413 39.130 0.00 0.00 0.00 4.17
2261 2886 3.355378 TCTGCTTATGGACATTTGGTGG 58.645 45.455 0.00 0.00 0.00 4.61
2262 2887 1.824230 TGCTTATGGACATTTGGTGGC 59.176 47.619 0.00 0.00 33.92 5.01
2263 2888 2.102578 GCTTATGGACATTTGGTGGCT 58.897 47.619 0.00 0.00 35.58 4.75
2264 2889 2.159198 GCTTATGGACATTTGGTGGCTG 60.159 50.000 0.00 0.00 35.58 4.85
2265 2890 3.355378 CTTATGGACATTTGGTGGCTGA 58.645 45.455 0.00 0.00 35.58 4.26
2266 2891 1.843368 ATGGACATTTGGTGGCTGAG 58.157 50.000 0.00 0.00 35.58 3.35
2267 2892 0.770499 TGGACATTTGGTGGCTGAGA 59.230 50.000 0.00 0.00 35.58 3.27
2268 2893 1.355381 TGGACATTTGGTGGCTGAGAT 59.645 47.619 0.00 0.00 35.58 2.75
2269 2894 2.225091 TGGACATTTGGTGGCTGAGATT 60.225 45.455 0.00 0.00 35.58 2.40
2270 2895 2.424956 GGACATTTGGTGGCTGAGATTC 59.575 50.000 0.00 0.00 35.58 2.52
2271 2896 3.084039 GACATTTGGTGGCTGAGATTCA 58.916 45.455 0.00 0.00 31.05 2.57
2272 2897 3.087031 ACATTTGGTGGCTGAGATTCAG 58.913 45.455 1.75 1.75 46.90 3.02
2280 2905 3.076104 CTGAGATTCAGCGGCACAT 57.924 52.632 1.45 0.00 37.72 3.21
2281 2906 0.656259 CTGAGATTCAGCGGCACATG 59.344 55.000 1.45 0.00 37.72 3.21
2283 2908 1.442526 GAGATTCAGCGGCACATGGG 61.443 60.000 1.45 0.00 0.00 4.00
2286 2911 2.769652 ATTCAGCGGCACATGGGTGT 62.770 55.000 1.45 0.00 46.95 4.16
2288 2913 1.673993 CAGCGGCACATGGGTGTAA 60.674 57.895 1.45 0.00 46.95 2.41
2289 2914 1.377202 AGCGGCACATGGGTGTAAG 60.377 57.895 1.45 0.00 46.95 2.34
2291 2916 1.369091 GCGGCACATGGGTGTAAGAG 61.369 60.000 0.00 0.00 46.95 2.85
2292 2917 0.249120 CGGCACATGGGTGTAAGAGA 59.751 55.000 0.00 0.00 46.95 3.10
2293 2918 1.740380 CGGCACATGGGTGTAAGAGAG 60.740 57.143 0.00 0.00 46.95 3.20
2294 2919 1.279271 GGCACATGGGTGTAAGAGAGT 59.721 52.381 0.00 0.00 46.95 3.24
2295 2920 2.290323 GGCACATGGGTGTAAGAGAGTT 60.290 50.000 0.00 0.00 46.95 3.01
2296 2921 3.412386 GCACATGGGTGTAAGAGAGTTT 58.588 45.455 0.00 0.00 46.95 2.66
2298 2923 5.186198 GCACATGGGTGTAAGAGAGTTTAT 58.814 41.667 0.00 0.00 46.95 1.40
2299 2924 5.648092 GCACATGGGTGTAAGAGAGTTTATT 59.352 40.000 0.00 0.00 46.95 1.40
2300 2925 6.183360 GCACATGGGTGTAAGAGAGTTTATTC 60.183 42.308 0.00 0.00 46.95 1.75
2301 2926 6.316390 CACATGGGTGTAAGAGAGTTTATTCC 59.684 42.308 0.00 0.00 40.24 3.01
2302 2927 6.012858 ACATGGGTGTAAGAGAGTTTATTCCA 60.013 38.462 0.00 0.00 36.63 3.53
2304 2929 6.650120 TGGGTGTAAGAGAGTTTATTCCATC 58.350 40.000 0.00 0.00 0.00 3.51
2305 2930 5.753921 GGGTGTAAGAGAGTTTATTCCATCG 59.246 44.000 0.00 0.00 0.00 3.84
2306 2931 6.406624 GGGTGTAAGAGAGTTTATTCCATCGA 60.407 42.308 0.00 0.00 0.00 3.59
2310 2935 9.667107 TGTAAGAGAGTTTATTCCATCGAAAAT 57.333 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.267174 TATCCGGAGTCTCTTACCCG 57.733 55.000 11.34 0.00 39.94 5.28
16 18 4.878878 GGAGTGGGCTTTATCCGG 57.121 61.111 0.00 0.00 0.00 5.14
34 36 4.534401 GGTCATTGCCGGTAGACC 57.466 61.111 13.88 13.88 43.18 3.85
58 60 3.848301 TTGTCGTCGGAGGGGTCGA 62.848 63.158 0.00 0.00 0.00 4.20
67 69 3.227667 GACGTTGGTTGTCGTCGG 58.772 61.111 0.00 0.00 44.70 4.79
75 77 2.241880 CCTTGTCGCGACGTTGGTT 61.242 57.895 31.88 0.00 0.00 3.67
78 80 1.660575 AGTCCTTGTCGCGACGTTG 60.661 57.895 31.88 23.00 34.10 4.10
80 82 2.050351 CAGTCCTTGTCGCGACGT 60.050 61.111 31.88 10.99 34.10 4.34
84 86 0.666274 TAGTTGCAGTCCTTGTCGCG 60.666 55.000 0.00 0.00 0.00 5.87
85 87 1.071605 CTAGTTGCAGTCCTTGTCGC 58.928 55.000 0.00 0.00 0.00 5.19
97 99 7.067008 TGTTGGGATAAATTAAGAGCTAGTTGC 59.933 37.037 0.00 0.00 43.29 4.17
98 100 8.506168 TGTTGGGATAAATTAAGAGCTAGTTG 57.494 34.615 0.00 0.00 0.00 3.16
177 179 4.002982 TGCACAAATTTCGACTCTAGCAT 58.997 39.130 0.00 0.00 0.00 3.79
179 181 4.404507 TTGCACAAATTTCGACTCTAGC 57.595 40.909 0.00 0.00 0.00 3.42
180 182 6.169419 TCATTGCACAAATTTCGACTCTAG 57.831 37.500 0.00 0.00 0.00 2.43
181 183 6.204688 AGTTCATTGCACAAATTTCGACTCTA 59.795 34.615 0.00 0.00 0.00 2.43
182 184 5.009010 AGTTCATTGCACAAATTTCGACTCT 59.991 36.000 0.00 0.00 0.00 3.24
183 185 5.215160 AGTTCATTGCACAAATTTCGACTC 58.785 37.500 0.00 0.00 0.00 3.36
184 186 5.186996 AGTTCATTGCACAAATTTCGACT 57.813 34.783 0.00 0.00 0.00 4.18
186 188 6.676950 ACATAGTTCATTGCACAAATTTCGA 58.323 32.000 0.00 0.00 0.00 3.71
187 189 6.932901 ACATAGTTCATTGCACAAATTTCG 57.067 33.333 0.00 0.00 0.00 3.46
290 292 9.804758 CGGATGGAGATATAGGTTTTAAGTATC 57.195 37.037 0.00 0.00 0.00 2.24
292 294 7.233962 TGCGGATGGAGATATAGGTTTTAAGTA 59.766 37.037 0.00 0.00 0.00 2.24
309 313 3.810310 AAAACTGTTTTTGCGGATGGA 57.190 38.095 12.50 0.00 33.45 3.41
343 348 4.798574 GAGCATCTTTAACAACAACCCTG 58.201 43.478 0.00 0.00 0.00 4.45
381 386 1.000283 CCATTGGTTGGCGCTTACAAA 60.000 47.619 7.64 6.02 39.09 2.83
390 395 5.963176 AAATGAATTTTCCATTGGTTGGC 57.037 34.783 1.86 0.00 46.01 4.52
413 418 8.477419 AGAACTTTTCCATTGGTCTGATAAAA 57.523 30.769 1.86 0.57 0.00 1.52
415 420 9.753674 ATTAGAACTTTTCCATTGGTCTGATAA 57.246 29.630 1.86 0.00 0.00 1.75
416 421 9.396022 GATTAGAACTTTTCCATTGGTCTGATA 57.604 33.333 1.86 0.00 0.00 2.15
417 422 8.112183 AGATTAGAACTTTTCCATTGGTCTGAT 58.888 33.333 1.86 0.00 0.00 2.90
418 423 7.461749 AGATTAGAACTTTTCCATTGGTCTGA 58.538 34.615 1.86 0.00 0.00 3.27
419 424 7.391554 TGAGATTAGAACTTTTCCATTGGTCTG 59.608 37.037 1.86 0.00 0.00 3.51
420 425 7.391833 GTGAGATTAGAACTTTTCCATTGGTCT 59.608 37.037 1.86 0.00 0.00 3.85
421 426 7.174946 TGTGAGATTAGAACTTTTCCATTGGTC 59.825 37.037 1.86 0.00 0.00 4.02
422 427 7.004086 TGTGAGATTAGAACTTTTCCATTGGT 58.996 34.615 1.86 0.00 0.00 3.67
423 428 7.452880 TGTGAGATTAGAACTTTTCCATTGG 57.547 36.000 0.00 0.00 0.00 3.16
425 430 9.965902 ACTATGTGAGATTAGAACTTTTCCATT 57.034 29.630 0.00 0.00 0.00 3.16
426 431 9.965902 AACTATGTGAGATTAGAACTTTTCCAT 57.034 29.630 0.00 0.00 0.00 3.41
427 432 9.793259 AAACTATGTGAGATTAGAACTTTTCCA 57.207 29.630 0.00 0.00 0.00 3.53
476 481 7.503566 TCTTTCTCAGTCAAATTCAAATGGACT 59.496 33.333 0.00 0.00 35.50 3.85
477 482 7.651808 TCTTTCTCAGTCAAATTCAAATGGAC 58.348 34.615 0.00 0.00 0.00 4.02
478 483 7.822161 TCTTTCTCAGTCAAATTCAAATGGA 57.178 32.000 0.00 0.00 0.00 3.41
494 501 6.566079 ATCTCCATTGTACCATCTTTCTCA 57.434 37.500 0.00 0.00 0.00 3.27
495 502 9.566432 AAATATCTCCATTGTACCATCTTTCTC 57.434 33.333 0.00 0.00 0.00 2.87
509 516 6.881065 CCATCGTACCATCAAATATCTCCATT 59.119 38.462 0.00 0.00 0.00 3.16
524 531 2.158957 GGCTCATCTTTCCATCGTACCA 60.159 50.000 0.00 0.00 0.00 3.25
527 534 2.028876 TCGGCTCATCTTTCCATCGTA 58.971 47.619 0.00 0.00 0.00 3.43
529 536 1.863454 CTTCGGCTCATCTTTCCATCG 59.137 52.381 0.00 0.00 0.00 3.84
530 537 2.911484 ACTTCGGCTCATCTTTCCATC 58.089 47.619 0.00 0.00 0.00 3.51
531 538 3.012518 CAACTTCGGCTCATCTTTCCAT 58.987 45.455 0.00 0.00 0.00 3.41
532 539 2.426522 CAACTTCGGCTCATCTTTCCA 58.573 47.619 0.00 0.00 0.00 3.53
533 540 1.740025 CCAACTTCGGCTCATCTTTCC 59.260 52.381 0.00 0.00 0.00 3.13
534 541 1.740025 CCCAACTTCGGCTCATCTTTC 59.260 52.381 0.00 0.00 0.00 2.62
537 544 1.207329 GTACCCAACTTCGGCTCATCT 59.793 52.381 0.00 0.00 0.00 2.90
538 545 1.207329 AGTACCCAACTTCGGCTCATC 59.793 52.381 0.00 0.00 33.35 2.92
540 547 0.320374 CAGTACCCAACTTCGGCTCA 59.680 55.000 0.00 0.00 35.76 4.26
541 548 0.606604 TCAGTACCCAACTTCGGCTC 59.393 55.000 0.00 0.00 35.76 4.70
542 549 1.053424 TTCAGTACCCAACTTCGGCT 58.947 50.000 0.00 0.00 35.76 5.52
544 551 3.818773 ACAATTTCAGTACCCAACTTCGG 59.181 43.478 0.00 0.00 35.76 4.30
545 552 5.432885 AACAATTTCAGTACCCAACTTCG 57.567 39.130 0.00 0.00 35.76 3.79
547 554 4.587262 GGGAACAATTTCAGTACCCAACTT 59.413 41.667 0.00 0.00 35.76 2.66
548 555 4.149598 GGGAACAATTTCAGTACCCAACT 58.850 43.478 0.00 0.00 39.81 3.16
549 556 3.892588 TGGGAACAATTTCAGTACCCAAC 59.107 43.478 0.00 0.00 42.11 3.77
603 629 1.750018 CGGAAGGCATGCATGACCA 60.750 57.895 29.09 0.00 36.08 4.02
605 631 2.410469 GCGGAAGGCATGCATGAC 59.590 61.111 30.64 28.31 42.87 3.06
665 691 4.082300 TCTGCGTTTCCACCTTTATACGTA 60.082 41.667 0.00 0.00 0.00 3.57
666 692 2.997986 CTGCGTTTCCACCTTTATACGT 59.002 45.455 0.00 0.00 0.00 3.57
667 693 3.255725 TCTGCGTTTCCACCTTTATACG 58.744 45.455 0.00 0.00 0.00 3.06
668 694 4.142752 GGTTCTGCGTTTCCACCTTTATAC 60.143 45.833 0.00 0.00 0.00 1.47
669 695 4.004982 GGTTCTGCGTTTCCACCTTTATA 58.995 43.478 0.00 0.00 0.00 0.98
677 703 4.473643 CAGGGTTCTGCGTTTCCA 57.526 55.556 0.00 0.00 33.86 3.53
702 728 0.970937 TTTTTGCGGGTGTTGGGTGA 60.971 50.000 0.00 0.00 0.00 4.02
731 761 0.798389 GGCGCCAGCTCGAAATTTTC 60.798 55.000 24.80 0.00 44.37 2.29
735 765 2.512515 GAGGCGCCAGCTCGAAAT 60.513 61.111 31.54 3.33 44.37 2.17
800 831 2.356313 GTGCCGCGGATCGATGAT 60.356 61.111 33.48 0.00 41.67 2.45
817 848 4.964241 GGGGATCCGGGGGAGAGG 62.964 77.778 5.45 0.00 34.05 3.69
912 945 0.251787 GTGATTTGCAGGAAGGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
922 957 1.962100 TGATTGCTGTGGTGATTTGCA 59.038 42.857 0.00 0.00 0.00 4.08
987 1033 0.172578 CGGACATGGCTGACGAACTA 59.827 55.000 0.00 0.00 0.00 2.24
1173 1223 3.375610 CGTTCTCGAGGAAGATCTTGAGA 59.624 47.826 14.00 15.04 46.81 3.27
1426 1476 7.861372 CGTTTCACGATACATCTAATCCTACTT 59.139 37.037 0.00 0.00 46.05 2.24
1427 1477 7.228108 TCGTTTCACGATACATCTAATCCTACT 59.772 37.037 0.00 0.00 46.73 2.57
1459 1510 2.095718 GGATTCAAACTTCAGGTGCGAC 60.096 50.000 0.00 0.00 0.00 5.19
1465 1516 6.154445 CACAAGATTGGATTCAAACTTCAGG 58.846 40.000 6.29 0.00 41.85 3.86
1508 1564 7.673776 GCAGTAAAAATCACAACAAAACCACAG 60.674 37.037 0.00 0.00 0.00 3.66
1511 1567 6.312426 CAGCAGTAAAAATCACAACAAAACCA 59.688 34.615 0.00 0.00 0.00 3.67
1512 1568 6.704819 CAGCAGTAAAAATCACAACAAAACC 58.295 36.000 0.00 0.00 0.00 3.27
1513 1569 6.184706 GCAGCAGTAAAAATCACAACAAAAC 58.815 36.000 0.00 0.00 0.00 2.43
1514 1570 5.005203 CGCAGCAGTAAAAATCACAACAAAA 59.995 36.000 0.00 0.00 0.00 2.44
1515 1571 4.502282 CGCAGCAGTAAAAATCACAACAAA 59.498 37.500 0.00 0.00 0.00 2.83
1516 1572 4.041049 CGCAGCAGTAAAAATCACAACAA 58.959 39.130 0.00 0.00 0.00 2.83
1540 1602 1.476074 GACACACCACAATTGCAACG 58.524 50.000 0.00 0.00 0.00 4.10
1605 1676 4.065088 CAGACTGAACTCGGGAAATTTCA 58.935 43.478 19.49 0.00 0.00 2.69
1615 1686 2.643933 TGAGATGCAGACTGAACTCG 57.356 50.000 6.65 0.00 0.00 4.18
1631 1702 6.318144 AGAATGGCAAATCTACAATGTCTGAG 59.682 38.462 4.53 0.00 0.00 3.35
1668 1828 3.909776 TCAGTCATTAGTTCACGTCGT 57.090 42.857 0.00 0.00 0.00 4.34
1696 1870 0.966920 CCTGGTTACTGACACGGACT 59.033 55.000 0.00 0.00 0.00 3.85
1699 1873 2.036733 TCTTTCCTGGTTACTGACACGG 59.963 50.000 0.00 0.00 0.00 4.94
1737 1911 7.873719 TTTCCACAGTCACAGAAAATAAGAA 57.126 32.000 0.00 0.00 0.00 2.52
1738 1912 7.502226 ACATTTCCACAGTCACAGAAAATAAGA 59.498 33.333 0.00 0.00 32.41 2.10
1739 1913 7.651808 ACATTTCCACAGTCACAGAAAATAAG 58.348 34.615 0.00 0.00 32.41 1.73
1740 1914 7.581213 ACATTTCCACAGTCACAGAAAATAA 57.419 32.000 0.00 0.00 32.41 1.40
1741 1915 7.284261 TGAACATTTCCACAGTCACAGAAAATA 59.716 33.333 0.00 0.00 32.41 1.40
1744 1918 4.946772 TGAACATTTCCACAGTCACAGAAA 59.053 37.500 0.00 0.00 33.13 2.52
1745 1919 4.335315 GTGAACATTTCCACAGTCACAGAA 59.665 41.667 0.00 0.00 33.72 3.02
1746 1920 3.876914 GTGAACATTTCCACAGTCACAGA 59.123 43.478 0.00 0.00 33.72 3.41
1747 1921 3.627123 TGTGAACATTTCCACAGTCACAG 59.373 43.478 0.38 0.00 38.26 3.66
1748 1922 3.615155 TGTGAACATTTCCACAGTCACA 58.385 40.909 0.38 0.38 38.26 3.58
1776 1950 5.242615 TGGTATTGCTGCTAATGTTTCAACA 59.757 36.000 0.00 0.00 44.06 3.33
1777 1951 5.708948 TGGTATTGCTGCTAATGTTTCAAC 58.291 37.500 0.00 0.00 0.00 3.18
1778 1952 5.973899 TGGTATTGCTGCTAATGTTTCAA 57.026 34.783 0.00 0.00 0.00 2.69
1784 1958 7.934457 AGTAAGAAATGGTATTGCTGCTAATG 58.066 34.615 0.00 0.00 0.00 1.90
1798 1972 7.976135 ATGCTGATAAGCTAGTAAGAAATGG 57.024 36.000 3.06 0.00 35.49 3.16
1803 1999 8.740906 GTGGTATATGCTGATAAGCTAGTAAGA 58.259 37.037 3.06 0.00 35.49 2.10
1847 2047 7.659390 CAGGTTTGAAGATGAAGTAAACTCTCT 59.341 37.037 0.00 0.00 33.15 3.10
1912 2118 2.187946 CTGGCCCTGGCTCTAACG 59.812 66.667 8.29 0.00 41.60 3.18
1925 2131 2.260743 GCTTTTGCTGGCTCTGGC 59.739 61.111 0.00 0.00 43.35 4.85
1926 2132 1.605738 AGGCTTTTGCTGGCTCTGG 60.606 57.895 0.00 0.00 46.54 3.86
1927 2133 1.177256 ACAGGCTTTTGCTGGCTCTG 61.177 55.000 0.00 0.00 46.54 3.35
1928 2134 0.401738 TACAGGCTTTTGCTGGCTCT 59.598 50.000 0.00 0.00 46.54 4.09
1929 2135 1.467920 ATACAGGCTTTTGCTGGCTC 58.532 50.000 0.00 0.00 46.54 4.70
1930 2136 1.928868 AATACAGGCTTTTGCTGGCT 58.071 45.000 0.00 0.00 46.54 4.75
1931 2137 2.755103 ACTAATACAGGCTTTTGCTGGC 59.245 45.455 0.00 0.00 46.54 4.85
1934 2140 5.437191 ACCTACTAATACAGGCTTTTGCT 57.563 39.130 0.00 0.00 46.54 3.91
1952 2158 8.119246 TCCCCTCATGATTGAAAAATAAACCTA 58.881 33.333 0.00 0.00 0.00 3.08
1968 2191 1.279496 CTTGACACCTCCCCTCATGA 58.721 55.000 0.00 0.00 0.00 3.07
2003 2244 2.094659 CACCATCGACCGACAGTGC 61.095 63.158 9.64 0.00 0.00 4.40
2004 2245 2.094659 GCACCATCGACCGACAGTG 61.095 63.158 15.20 15.20 35.11 3.66
2005 2246 1.816863 AAGCACCATCGACCGACAGT 61.817 55.000 0.00 0.00 0.00 3.55
2006 2247 0.670546 AAAGCACCATCGACCGACAG 60.671 55.000 0.00 0.00 0.00 3.51
2007 2248 0.250124 AAAAGCACCATCGACCGACA 60.250 50.000 0.00 0.00 0.00 4.35
2008 2249 0.872388 AAAAAGCACCATCGACCGAC 59.128 50.000 0.00 0.00 0.00 4.79
2009 2250 1.153353 GAAAAAGCACCATCGACCGA 58.847 50.000 0.00 0.00 0.00 4.69
2012 2253 1.128692 CTCCGAAAAAGCACCATCGAC 59.871 52.381 0.00 0.00 37.48 4.20
2013 2254 1.438651 CTCCGAAAAAGCACCATCGA 58.561 50.000 0.00 0.00 37.48 3.59
2014 2255 0.447801 CCTCCGAAAAAGCACCATCG 59.552 55.000 0.00 0.00 35.19 3.84
2015 2256 0.171231 GCCTCCGAAAAAGCACCATC 59.829 55.000 0.00 0.00 0.00 3.51
2018 2259 2.561373 CGCCTCCGAAAAAGCACC 59.439 61.111 0.00 0.00 36.29 5.01
2019 2260 1.305930 ATCCGCCTCCGAAAAAGCAC 61.306 55.000 0.00 0.00 36.29 4.40
2021 2262 1.429423 CATCCGCCTCCGAAAAAGC 59.571 57.895 0.00 0.00 36.29 3.51
2022 2263 0.392461 TCCATCCGCCTCCGAAAAAG 60.392 55.000 0.00 0.00 36.29 2.27
2023 2264 0.254747 ATCCATCCGCCTCCGAAAAA 59.745 50.000 0.00 0.00 36.29 1.94
2024 2265 0.179056 GATCCATCCGCCTCCGAAAA 60.179 55.000 0.00 0.00 36.29 2.29
2025 2266 1.334384 TGATCCATCCGCCTCCGAAA 61.334 55.000 0.00 0.00 36.29 3.46
2026 2267 1.748329 CTGATCCATCCGCCTCCGAA 61.748 60.000 0.00 0.00 36.29 4.30
2027 2268 2.123468 TGATCCATCCGCCTCCGA 60.123 61.111 0.00 0.00 36.29 4.55
2028 2269 2.341543 CTGATCCATCCGCCTCCG 59.658 66.667 0.00 0.00 0.00 4.63
2029 2270 2.031768 GCTGATCCATCCGCCTCC 59.968 66.667 0.00 0.00 31.84 4.30
2030 2271 1.301558 CTGCTGATCCATCCGCCTC 60.302 63.158 1.06 0.00 36.37 4.70
2032 2273 2.976903 GCTGCTGATCCATCCGCC 60.977 66.667 0.00 0.00 36.37 6.13
2033 2274 2.203112 TGCTGCTGATCCATCCGC 60.203 61.111 0.00 0.00 37.51 5.54
2035 2276 2.252346 CGCTGCTGCTGATCCATCC 61.252 63.158 14.03 0.00 36.97 3.51
2036 2277 2.252346 CCGCTGCTGCTGATCCATC 61.252 63.158 14.03 0.00 36.97 3.51
2037 2278 2.203167 CCGCTGCTGCTGATCCAT 60.203 61.111 14.03 0.00 36.97 3.41
2040 2281 3.472943 ATCCCCGCTGCTGCTGATC 62.473 63.158 14.03 0.00 36.97 2.92
2041 2282 3.486685 ATCCCCGCTGCTGCTGAT 61.487 61.111 14.03 9.62 36.97 2.90
2042 2283 4.478371 CATCCCCGCTGCTGCTGA 62.478 66.667 14.03 7.76 36.97 4.26
2051 2292 3.785859 TCTCAGCACCATCCCCGC 61.786 66.667 0.00 0.00 0.00 6.13
2052 2293 2.187946 GTCTCAGCACCATCCCCG 59.812 66.667 0.00 0.00 0.00 5.73
2055 2296 0.247736 ACTTCGTCTCAGCACCATCC 59.752 55.000 0.00 0.00 0.00 3.51
2057 2298 0.969149 TCACTTCGTCTCAGCACCAT 59.031 50.000 0.00 0.00 0.00 3.55
2058 2299 0.032130 GTCACTTCGTCTCAGCACCA 59.968 55.000 0.00 0.00 0.00 4.17
2059 2300 1.004277 CGTCACTTCGTCTCAGCACC 61.004 60.000 0.00 0.00 0.00 5.01
2060 2301 1.004277 CCGTCACTTCGTCTCAGCAC 61.004 60.000 0.00 0.00 0.00 4.40
2061 2302 1.285950 CCGTCACTTCGTCTCAGCA 59.714 57.895 0.00 0.00 0.00 4.41
2063 2304 1.466024 GCTACCGTCACTTCGTCTCAG 60.466 57.143 0.00 0.00 0.00 3.35
2064 2305 0.520404 GCTACCGTCACTTCGTCTCA 59.480 55.000 0.00 0.00 0.00 3.27
2065 2306 0.520827 CGCTACCGTCACTTCGTCTC 60.521 60.000 0.00 0.00 0.00 3.36
2066 2307 1.233285 ACGCTACCGTCACTTCGTCT 61.233 55.000 0.00 0.00 46.39 4.18
2068 2309 3.348236 ACGCTACCGTCACTTCGT 58.652 55.556 0.00 0.00 46.39 3.85
2077 2318 0.647410 CTGCAAAGATGACGCTACCG 59.353 55.000 0.00 0.00 41.14 4.02
2078 2319 0.375106 GCTGCAAAGATGACGCTACC 59.625 55.000 0.00 0.00 0.00 3.18
2081 2322 1.669115 ACGCTGCAAAGATGACGCT 60.669 52.632 0.00 0.00 0.00 5.07
2082 2323 1.510623 CACGCTGCAAAGATGACGC 60.511 57.895 0.00 0.00 0.00 5.19
2083 2324 0.179240 GACACGCTGCAAAGATGACG 60.179 55.000 0.00 0.00 0.00 4.35
2084 2325 0.179240 CGACACGCTGCAAAGATGAC 60.179 55.000 0.00 0.00 0.00 3.06
2086 2327 1.133253 CCGACACGCTGCAAAGATG 59.867 57.895 0.00 0.00 0.00 2.90
2088 2329 2.108157 ACCGACACGCTGCAAAGA 59.892 55.556 0.00 0.00 0.00 2.52
2089 2330 1.218875 TACACCGACACGCTGCAAAG 61.219 55.000 0.00 0.00 0.00 2.77
2091 2332 0.601576 AATACACCGACACGCTGCAA 60.602 50.000 0.00 0.00 0.00 4.08
2093 2334 0.515564 AAAATACACCGACACGCTGC 59.484 50.000 0.00 0.00 0.00 5.25
2094 2335 1.795872 TGAAAATACACCGACACGCTG 59.204 47.619 0.00 0.00 0.00 5.18
2095 2336 2.157834 TGAAAATACACCGACACGCT 57.842 45.000 0.00 0.00 0.00 5.07
2096 2337 2.222445 AGTTGAAAATACACCGACACGC 59.778 45.455 0.00 0.00 0.00 5.34
2097 2338 3.794536 CAGTTGAAAATACACCGACACG 58.205 45.455 0.00 0.00 0.00 4.49
2099 2340 3.206964 TGCAGTTGAAAATACACCGACA 58.793 40.909 0.00 0.00 0.00 4.35
2100 2341 3.889196 TGCAGTTGAAAATACACCGAC 57.111 42.857 0.00 0.00 0.00 4.79
2101 2342 4.517075 TCATTGCAGTTGAAAATACACCGA 59.483 37.500 0.00 0.00 0.00 4.69
2102 2343 4.616802 GTCATTGCAGTTGAAAATACACCG 59.383 41.667 3.27 0.00 0.00 4.94
2103 2344 4.616802 CGTCATTGCAGTTGAAAATACACC 59.383 41.667 3.27 0.00 0.00 4.16
2104 2345 4.088496 GCGTCATTGCAGTTGAAAATACAC 59.912 41.667 3.27 0.00 34.15 2.90
2105 2346 4.225984 GCGTCATTGCAGTTGAAAATACA 58.774 39.130 3.27 0.00 34.15 2.29
2106 2347 3.608073 GGCGTCATTGCAGTTGAAAATAC 59.392 43.478 3.27 0.00 36.28 1.89
2107 2348 3.366883 GGGCGTCATTGCAGTTGAAAATA 60.367 43.478 3.27 0.00 36.28 1.40
2110 2351 0.313672 GGGCGTCATTGCAGTTGAAA 59.686 50.000 3.27 0.00 36.28 2.69
2111 2352 0.537143 AGGGCGTCATTGCAGTTGAA 60.537 50.000 3.27 0.00 36.28 2.69
2113 2354 0.729116 CTAGGGCGTCATTGCAGTTG 59.271 55.000 0.00 0.00 36.28 3.16
2114 2355 0.613260 TCTAGGGCGTCATTGCAGTT 59.387 50.000 0.00 0.00 36.28 3.16
2117 2358 0.744414 GCTTCTAGGGCGTCATTGCA 60.744 55.000 0.00 0.00 36.28 4.08
2118 2359 0.462759 AGCTTCTAGGGCGTCATTGC 60.463 55.000 0.00 0.00 34.52 3.56
2119 2360 1.134699 TCAGCTTCTAGGGCGTCATTG 60.135 52.381 0.00 0.00 34.52 2.82
2122 2363 0.246635 GTTCAGCTTCTAGGGCGTCA 59.753 55.000 0.00 0.00 34.52 4.35
2123 2364 0.533032 AGTTCAGCTTCTAGGGCGTC 59.467 55.000 0.00 0.00 34.52 5.19
2125 2366 1.476891 TGTAGTTCAGCTTCTAGGGCG 59.523 52.381 0.00 0.00 34.52 6.13
2130 2755 3.694566 TCGAGCATGTAGTTCAGCTTCTA 59.305 43.478 0.00 0.00 37.48 2.10
2131 2756 2.493675 TCGAGCATGTAGTTCAGCTTCT 59.506 45.455 0.00 0.00 37.48 2.85
2132 2757 2.881074 TCGAGCATGTAGTTCAGCTTC 58.119 47.619 0.00 0.00 37.48 3.86
2137 2762 2.971307 TGCATTCGAGCATGTAGTTCA 58.029 42.857 0.00 0.00 40.11 3.18
2138 2763 3.242543 CCTTGCATTCGAGCATGTAGTTC 60.243 47.826 0.00 0.00 45.19 3.01
2139 2764 2.679837 CCTTGCATTCGAGCATGTAGTT 59.320 45.455 0.00 0.00 45.19 2.24
2141 2766 1.600957 CCCTTGCATTCGAGCATGTAG 59.399 52.381 0.00 0.00 45.19 2.74
2143 2768 0.035152 TCCCTTGCATTCGAGCATGT 60.035 50.000 0.00 0.00 45.19 3.21
2145 2770 1.315690 CATCCCTTGCATTCGAGCAT 58.684 50.000 0.00 0.00 45.19 3.79
2157 2782 2.025037 TCAATAGCAAGTGCCATCCCTT 60.025 45.455 0.00 0.00 43.38 3.95
2158 2783 1.565759 TCAATAGCAAGTGCCATCCCT 59.434 47.619 0.00 0.00 43.38 4.20
2172 2797 2.164422 TCAGTCTCACCGTGCTCAATAG 59.836 50.000 0.00 0.00 0.00 1.73
2173 2798 2.167662 TCAGTCTCACCGTGCTCAATA 58.832 47.619 0.00 0.00 0.00 1.90
2174 2799 0.969149 TCAGTCTCACCGTGCTCAAT 59.031 50.000 0.00 0.00 0.00 2.57
2175 2800 0.969149 ATCAGTCTCACCGTGCTCAA 59.031 50.000 0.00 0.00 0.00 3.02
2177 2802 1.634702 GAATCAGTCTCACCGTGCTC 58.365 55.000 0.00 0.00 0.00 4.26
2178 2803 0.109086 CGAATCAGTCTCACCGTGCT 60.109 55.000 0.00 0.00 0.00 4.40
2179 2804 0.388649 ACGAATCAGTCTCACCGTGC 60.389 55.000 0.00 0.00 0.00 5.34
2181 2806 1.200252 CTGACGAATCAGTCTCACCGT 59.800 52.381 0.00 0.00 46.39 4.83
2192 2817 3.486542 GCCATGAAAGCTTCTGACGAATC 60.487 47.826 0.00 0.00 0.00 2.52
2193 2818 2.421424 GCCATGAAAGCTTCTGACGAAT 59.579 45.455 0.00 0.00 0.00 3.34
2195 2820 1.270785 TGCCATGAAAGCTTCTGACGA 60.271 47.619 0.00 0.00 0.00 4.20
2197 2822 3.192001 TCAATGCCATGAAAGCTTCTGAC 59.808 43.478 0.00 0.00 0.00 3.51
2198 2823 3.423749 TCAATGCCATGAAAGCTTCTGA 58.576 40.909 0.00 0.00 0.00 3.27
2199 2824 3.442625 TCTCAATGCCATGAAAGCTTCTG 59.557 43.478 0.00 0.00 0.00 3.02
2200 2825 3.693807 TCTCAATGCCATGAAAGCTTCT 58.306 40.909 0.00 0.00 0.00 2.85
2201 2826 3.181489 CCTCTCAATGCCATGAAAGCTTC 60.181 47.826 0.00 0.00 0.00 3.86
2202 2827 2.758979 CCTCTCAATGCCATGAAAGCTT 59.241 45.455 0.00 0.00 0.00 3.74
2203 2828 2.376109 CCTCTCAATGCCATGAAAGCT 58.624 47.619 0.00 0.00 0.00 3.74
2204 2829 1.407979 CCCTCTCAATGCCATGAAAGC 59.592 52.381 0.00 0.00 0.00 3.51
2205 2830 2.029623 CCCCTCTCAATGCCATGAAAG 58.970 52.381 0.00 0.00 0.00 2.62
2206 2831 1.640149 TCCCCTCTCAATGCCATGAAA 59.360 47.619 0.00 0.00 0.00 2.69
2207 2832 1.064463 GTCCCCTCTCAATGCCATGAA 60.064 52.381 0.00 0.00 0.00 2.57
2209 2834 0.256752 TGTCCCCTCTCAATGCCATG 59.743 55.000 0.00 0.00 0.00 3.66
2210 2835 1.002069 TTGTCCCCTCTCAATGCCAT 58.998 50.000 0.00 0.00 0.00 4.40
2212 2837 1.213926 AGATTGTCCCCTCTCAATGCC 59.786 52.381 0.00 0.00 34.92 4.40
2213 2838 2.725221 AGATTGTCCCCTCTCAATGC 57.275 50.000 0.00 0.00 34.92 3.56
2214 2839 3.201290 CGAAGATTGTCCCCTCTCAATG 58.799 50.000 0.00 0.00 34.92 2.82
2215 2840 2.171448 CCGAAGATTGTCCCCTCTCAAT 59.829 50.000 0.00 0.00 37.04 2.57
2220 2845 3.388350 AGAATACCGAAGATTGTCCCCTC 59.612 47.826 0.00 0.00 0.00 4.30
2221 2846 3.134804 CAGAATACCGAAGATTGTCCCCT 59.865 47.826 0.00 0.00 0.00 4.79
2222 2847 3.467803 CAGAATACCGAAGATTGTCCCC 58.532 50.000 0.00 0.00 0.00 4.81
2223 2848 2.872858 GCAGAATACCGAAGATTGTCCC 59.127 50.000 0.00 0.00 0.00 4.46
2224 2849 3.798202 AGCAGAATACCGAAGATTGTCC 58.202 45.455 0.00 0.00 0.00 4.02
2226 2851 5.760253 CCATAAGCAGAATACCGAAGATTGT 59.240 40.000 0.00 0.00 0.00 2.71
2227 2852 5.991606 TCCATAAGCAGAATACCGAAGATTG 59.008 40.000 0.00 0.00 0.00 2.67
2228 2853 5.992217 GTCCATAAGCAGAATACCGAAGATT 59.008 40.000 0.00 0.00 0.00 2.40
2230 2855 4.404394 TGTCCATAAGCAGAATACCGAAGA 59.596 41.667 0.00 0.00 0.00 2.87
2231 2856 4.693283 TGTCCATAAGCAGAATACCGAAG 58.307 43.478 0.00 0.00 0.00 3.79
2232 2857 4.746535 TGTCCATAAGCAGAATACCGAA 57.253 40.909 0.00 0.00 0.00 4.30
2233 2858 4.955811 ATGTCCATAAGCAGAATACCGA 57.044 40.909 0.00 0.00 0.00 4.69
2234 2859 5.277974 CCAAATGTCCATAAGCAGAATACCG 60.278 44.000 0.00 0.00 0.00 4.02
2235 2860 5.594317 ACCAAATGTCCATAAGCAGAATACC 59.406 40.000 0.00 0.00 0.00 2.73
2236 2861 6.460123 CCACCAAATGTCCATAAGCAGAATAC 60.460 42.308 0.00 0.00 0.00 1.89
2237 2862 5.593909 CCACCAAATGTCCATAAGCAGAATA 59.406 40.000 0.00 0.00 0.00 1.75
2241 2866 2.159198 GCCACCAAATGTCCATAAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
2242 2867 1.824230 GCCACCAAATGTCCATAAGCA 59.176 47.619 0.00 0.00 0.00 3.91
2243 2868 2.102578 AGCCACCAAATGTCCATAAGC 58.897 47.619 0.00 0.00 0.00 3.09
2244 2869 3.355378 TCAGCCACCAAATGTCCATAAG 58.645 45.455 0.00 0.00 0.00 1.73
2245 2870 3.010027 TCTCAGCCACCAAATGTCCATAA 59.990 43.478 0.00 0.00 0.00 1.90
2246 2871 2.575735 TCTCAGCCACCAAATGTCCATA 59.424 45.455 0.00 0.00 0.00 2.74
2247 2872 1.355381 TCTCAGCCACCAAATGTCCAT 59.645 47.619 0.00 0.00 0.00 3.41
2248 2873 0.770499 TCTCAGCCACCAAATGTCCA 59.230 50.000 0.00 0.00 0.00 4.02
2249 2874 2.134789 ATCTCAGCCACCAAATGTCC 57.865 50.000 0.00 0.00 0.00 4.02
2250 2875 3.084039 TGAATCTCAGCCACCAAATGTC 58.916 45.455 0.00 0.00 0.00 3.06
2251 2876 3.087031 CTGAATCTCAGCCACCAAATGT 58.913 45.455 0.00 0.00 37.72 2.71
2252 2877 3.777465 CTGAATCTCAGCCACCAAATG 57.223 47.619 0.00 0.00 37.72 2.32
2262 2887 0.656259 CATGTGCCGCTGAATCTCAG 59.344 55.000 0.00 0.00 46.90 3.35
2263 2888 0.745486 CCATGTGCCGCTGAATCTCA 60.745 55.000 0.00 0.00 0.00 3.27
2264 2889 1.442526 CCCATGTGCCGCTGAATCTC 61.443 60.000 0.00 0.00 0.00 2.75
2265 2890 1.452651 CCCATGTGCCGCTGAATCT 60.453 57.895 0.00 0.00 0.00 2.40
2266 2891 1.750399 ACCCATGTGCCGCTGAATC 60.750 57.895 0.00 0.00 0.00 2.52
2267 2892 2.048023 CACCCATGTGCCGCTGAAT 61.048 57.895 0.00 0.00 35.31 2.57
2268 2893 2.118233 TACACCCATGTGCCGCTGAA 62.118 55.000 0.00 0.00 46.86 3.02
2269 2894 2.118233 TTACACCCATGTGCCGCTGA 62.118 55.000 0.00 0.00 46.86 4.26
2270 2895 1.647545 CTTACACCCATGTGCCGCTG 61.648 60.000 0.00 0.00 46.86 5.18
2271 2896 1.377202 CTTACACCCATGTGCCGCT 60.377 57.895 0.00 0.00 46.86 5.52
2272 2897 1.369091 CTCTTACACCCATGTGCCGC 61.369 60.000 0.00 0.00 46.86 6.53
2273 2898 0.249120 TCTCTTACACCCATGTGCCG 59.751 55.000 0.00 0.00 46.86 5.69
2274 2899 1.279271 ACTCTCTTACACCCATGTGCC 59.721 52.381 0.00 0.00 46.86 5.01
2275 2900 2.770164 ACTCTCTTACACCCATGTGC 57.230 50.000 0.00 0.00 46.86 4.57
2278 2903 6.414732 TGGAATAAACTCTCTTACACCCATG 58.585 40.000 0.00 0.00 0.00 3.66
2280 2905 6.629515 CGATGGAATAAACTCTCTTACACCCA 60.630 42.308 0.00 0.00 0.00 4.51
2281 2906 5.753921 CGATGGAATAAACTCTCTTACACCC 59.246 44.000 0.00 0.00 0.00 4.61
2283 2908 8.475331 TTTCGATGGAATAAACTCTCTTACAC 57.525 34.615 0.00 0.00 30.88 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.