Multiple sequence alignment - TraesCS1B01G300500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G300500 chr1B 100.000 5096 0 0 1 5096 520930159 520925064 0.000000e+00 9411.0
1 TraesCS1B01G300500 chr1B 81.597 2141 248 87 1017 3084 521002145 521000078 0.000000e+00 1637.0
2 TraesCS1B01G300500 chr1B 77.661 761 129 24 3113 3852 521000019 520999279 4.720000e-115 425.0
3 TraesCS1B01G300500 chr1B 93.506 154 10 0 3950 4103 520999235 520999082 3.970000e-56 230.0
4 TraesCS1B01G300500 chr1B 97.710 131 3 0 1017 1147 520929074 520928944 5.130000e-55 226.0
5 TraesCS1B01G300500 chr1B 97.710 131 3 0 1086 1216 520929143 520929013 5.130000e-55 226.0
6 TraesCS1B01G300500 chr1B 96.748 123 3 1 4974 5096 105904836 105904957 2.410000e-48 204.0
7 TraesCS1B01G300500 chr1B 96.748 123 3 1 4974 5096 406129405 406129284 2.410000e-48 204.0
8 TraesCS1B01G300500 chr1B 96.748 123 2 2 4974 5096 685563183 685563303 2.410000e-48 204.0
9 TraesCS1B01G300500 chr1B 96.748 123 3 1 4974 5096 685596520 685596641 2.410000e-48 204.0
10 TraesCS1B01G300500 chr1B 86.624 157 20 1 307 462 566997584 566997740 6.780000e-39 172.0
11 TraesCS1B01G300500 chr1B 98.387 62 1 0 1017 1078 520929005 520928944 5.390000e-20 110.0
12 TraesCS1B01G300500 chr1B 98.387 62 1 0 1155 1216 520929143 520929082 5.390000e-20 110.0
13 TraesCS1B01G300500 chr1D 91.667 2124 86 26 594 2679 387801195 387799125 0.000000e+00 2857.0
14 TraesCS1B01G300500 chr1D 86.706 1339 116 40 3679 4979 387797291 387795977 0.000000e+00 1430.0
15 TraesCS1B01G300500 chr1D 90.647 1005 65 15 2677 3679 387798772 387797795 0.000000e+00 1308.0
16 TraesCS1B01G300500 chr1D 86.477 843 76 23 1614 2428 387897460 387896628 0.000000e+00 891.0
17 TraesCS1B01G300500 chr1D 80.769 806 74 49 749 1488 387898411 387897621 5.760000e-154 555.0
18 TraesCS1B01G300500 chr1D 78.864 757 122 28 3113 3852 387895863 387895128 1.280000e-130 477.0
19 TraesCS1B01G300500 chr1D 83.128 486 57 12 2600 3084 387896390 387895929 2.190000e-113 420.0
20 TraesCS1B01G300500 chr1D 94.839 155 8 0 3949 4103 387895085 387894931 5.100000e-60 243.0
21 TraesCS1B01G300500 chr1D 89.691 194 12 3 127 313 387801426 387801234 1.830000e-59 241.0
22 TraesCS1B01G300500 chr1D 96.947 131 4 0 1017 1147 387800707 387800577 2.390000e-53 220.0
23 TraesCS1B01G300500 chr1D 96.947 131 4 0 1086 1216 387800776 387800646 2.390000e-53 220.0
24 TraesCS1B01G300500 chr1D 86.471 170 12 6 1056 1215 387898116 387897948 5.240000e-40 176.0
25 TraesCS1B01G300500 chr1D 81.818 176 29 3 306 481 379789598 379789770 1.480000e-30 145.0
26 TraesCS1B01G300500 chr1D 90.000 90 7 2 1127 1215 387898114 387898026 1.160000e-21 115.0
27 TraesCS1B01G300500 chr1D 84.874 119 9 4 1106 1215 387898105 387897987 1.500000e-20 111.0
28 TraesCS1B01G300500 chr1D 96.774 62 2 0 1017 1078 387800638 387800577 2.510000e-18 104.0
29 TraesCS1B01G300500 chr1D 96.774 62 2 0 1155 1216 387800776 387800715 2.510000e-18 104.0
30 TraesCS1B01G300500 chr1D 93.443 61 4 0 66 126 22695008 22694948 1.950000e-14 91.6
31 TraesCS1B01G300500 chr1A 87.418 1669 148 31 3353 4979 487331377 487329729 0.000000e+00 1862.0
32 TraesCS1B01G300500 chr1A 93.875 849 44 4 1599 2439 487332960 487332112 0.000000e+00 1273.0
33 TraesCS1B01G300500 chr1A 82.966 1497 170 54 1614 3084 487465672 487464235 0.000000e+00 1273.0
34 TraesCS1B01G300500 chr1A 85.729 988 93 21 127 1098 487334724 487333769 0.000000e+00 1000.0
35 TraesCS1B01G300500 chr1A 92.038 628 37 5 2550 3166 487332087 487331462 0.000000e+00 870.0
36 TraesCS1B01G300500 chr1A 94.217 415 14 4 1134 1548 487333831 487333427 4.330000e-175 625.0
37 TraesCS1B01G300500 chr1A 78.032 742 130 21 3125 3852 487464152 487463430 2.180000e-118 436.0
38 TraesCS1B01G300500 chr1A 82.946 516 51 21 1056 1561 487466260 487465772 1.010000e-116 431.0
39 TraesCS1B01G300500 chr1A 94.156 154 9 0 3950 4103 487463386 487463233 8.530000e-58 235.0
40 TraesCS1B01G300500 chr1A 84.337 166 22 4 307 470 585178977 585178814 5.280000e-35 159.0
41 TraesCS1B01G300500 chr1A 97.561 82 2 0 1086 1167 487333850 487333769 1.910000e-29 141.0
42 TraesCS1B01G300500 chr1A 96.774 62 2 0 1155 1216 487333850 487333789 2.510000e-18 104.0
43 TraesCS1B01G300500 chr2B 81.029 311 51 7 4670 4977 800487420 800487725 1.830000e-59 241.0
44 TraesCS1B01G300500 chr2B 91.935 62 5 0 3 64 14177639 14177578 2.530000e-13 87.9
45 TraesCS1B01G300500 chr7A 79.874 318 52 8 4658 4968 654993189 654993501 6.640000e-54 222.0
46 TraesCS1B01G300500 chr7A 85.987 157 21 1 307 462 592296490 592296334 3.160000e-37 167.0
47 TraesCS1B01G300500 chr3D 79.503 322 57 9 4651 4967 613830111 613829794 2.390000e-53 220.0
48 TraesCS1B01G300500 chr3D 85.987 157 19 2 309 462 595702623 595702467 1.140000e-36 165.0
49 TraesCS1B01G300500 chr6D 79.385 325 55 10 4659 4977 306211135 306211453 8.590000e-53 219.0
50 TraesCS1B01G300500 chr4B 96.748 123 3 1 4974 5096 42244433 42244554 2.410000e-48 204.0
51 TraesCS1B01G300500 chr4B 82.400 125 19 3 5 127 471158228 471158105 6.980000e-19 106.0
52 TraesCS1B01G300500 chr4B 81.884 138 11 4 3 126 205873563 205873426 2.510000e-18 104.0
53 TraesCS1B01G300500 chr4B 93.478 46 2 1 4897 4941 22487106 22487151 3.290000e-07 67.6
54 TraesCS1B01G300500 chr3B 97.500 120 2 1 4974 5093 816985782 816985900 2.410000e-48 204.0
55 TraesCS1B01G300500 chr3B 97.500 120 2 1 4974 5093 816992636 816992754 2.410000e-48 204.0
56 TraesCS1B01G300500 chr3B 97.500 120 2 1 4974 5093 816999488 816999606 2.410000e-48 204.0
57 TraesCS1B01G300500 chr2A 96.748 123 3 1 4974 5096 762184671 762184792 2.410000e-48 204.0
58 TraesCS1B01G300500 chr2D 77.946 331 63 8 4651 4977 37135772 37135448 1.120000e-46 198.0
59 TraesCS1B01G300500 chr5B 77.399 323 64 8 4659 4977 536598833 536598516 3.130000e-42 183.0
60 TraesCS1B01G300500 chr5B 84.177 158 21 4 307 462 83678996 83678841 3.180000e-32 150.0
61 TraesCS1B01G300500 chr3A 85.083 181 25 2 291 470 363565565 363565386 3.130000e-42 183.0
62 TraesCS1B01G300500 chrUn 80.085 236 36 9 4651 4881 28291495 28291724 1.140000e-36 165.0
63 TraesCS1B01G300500 chrUn 81.295 139 12 4 3 127 258191602 258191740 3.250000e-17 100.0
64 TraesCS1B01G300500 chr7D 84.615 156 23 1 307 461 24824060 24823905 2.460000e-33 154.0
65 TraesCS1B01G300500 chr7D 84.874 119 17 1 10 127 184532373 184532255 8.960000e-23 119.0
66 TraesCS1B01G300500 chr7D 83.594 128 17 2 3 126 555869198 555869325 3.220000e-22 117.0
67 TraesCS1B01G300500 chr7D 84.545 110 11 5 10 119 46352774 46352671 2.510000e-18 104.0
68 TraesCS1B01G300500 chr7D 82.645 121 13 5 10 129 594144094 594144207 3.250000e-17 100.0
69 TraesCS1B01G300500 chr4A 83.735 166 24 3 307 470 601158917 601158753 2.460000e-33 154.0
70 TraesCS1B01G300500 chr4A 85.827 127 12 5 3 127 177864144 177864266 4.140000e-26 130.0
71 TraesCS1B01G300500 chr5D 80.714 140 13 4 3 128 6079152 6079291 4.200000e-16 97.1
72 TraesCS1B01G300500 chr4D 89.706 68 6 1 66 133 158355817 158355883 9.090000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G300500 chr1B 520925064 520930159 5095 True 2016.600000 9411 98.438800 1 5096 5 chr1B.!!$R2 5095
1 TraesCS1B01G300500 chr1B 520999082 521002145 3063 True 764.000000 1637 84.254667 1017 4103 3 chr1B.!!$R3 3086
2 TraesCS1B01G300500 chr1D 387795977 387801426 5449 True 810.500000 2857 93.269125 127 4979 8 chr1D.!!$R2 4852
3 TraesCS1B01G300500 chr1D 387894931 387898411 3480 True 373.500000 891 85.677750 749 4103 8 chr1D.!!$R3 3354
4 TraesCS1B01G300500 chr1A 487329729 487334724 4995 True 839.285714 1862 92.516000 127 4979 7 chr1A.!!$R2 4852
5 TraesCS1B01G300500 chr1A 487463233 487466260 3027 True 593.750000 1273 84.525000 1056 4103 4 chr1A.!!$R3 3047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 455 0.036952 GAGCTGAAGGTGTGCTGCTA 60.037 55.0 0.00 0.0 39.04 3.49 F
1565 2244 0.032952 TGTACCGCTTTCACGCTCTT 59.967 50.0 0.00 0.0 0.00 2.85 F
1992 2735 0.250124 TTGCCTTGTTGATCGACCGT 60.250 50.0 10.69 0.0 0.00 4.83 F
1994 2737 0.442699 GCCTTGTTGATCGACCGTTC 59.557 55.0 10.69 0.0 0.00 3.95 F
2461 3223 0.700564 AGTGCATGGATGAACCCACT 59.299 50.0 0.00 0.0 37.01 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 2882 0.190566 CCATGGGGATAAATGGGGCA 59.809 55.000 2.85 0.0 39.82 5.36 R
2454 3216 0.178961 GGGCAAGAAGGAAGTGGGTT 60.179 55.000 0.00 0.0 0.00 4.11 R
3751 5547 2.955660 GGGTCATGAAAACAAGGACACA 59.044 45.455 0.00 0.0 32.29 3.72 R
3821 5627 3.066291 ACCATTCGGAACATGTGCTTA 57.934 42.857 3.21 0.0 35.59 3.09 R
4205 6041 1.114119 TGATGCAAGGCAACAAGGCA 61.114 50.000 0.00 0.0 43.62 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.253513 GGTGTTGTGCGCCATTAGT 58.746 52.632 4.18 0.00 46.73 2.24
22 23 0.109781 GGTGTTGTGCGCCATTAGTG 60.110 55.000 4.18 0.00 46.73 2.74
23 24 0.871722 GTGTTGTGCGCCATTAGTGA 59.128 50.000 4.18 0.00 0.00 3.41
24 25 1.468520 GTGTTGTGCGCCATTAGTGAT 59.531 47.619 4.18 0.00 0.00 3.06
25 26 2.675844 GTGTTGTGCGCCATTAGTGATA 59.324 45.455 4.18 0.00 0.00 2.15
26 27 3.312421 GTGTTGTGCGCCATTAGTGATAT 59.688 43.478 4.18 0.00 0.00 1.63
27 28 3.312146 TGTTGTGCGCCATTAGTGATATG 59.688 43.478 4.18 0.00 0.00 1.78
28 29 3.467374 TGTGCGCCATTAGTGATATGA 57.533 42.857 4.18 0.00 0.00 2.15
29 30 3.802866 TGTGCGCCATTAGTGATATGAA 58.197 40.909 4.18 0.00 0.00 2.57
30 31 3.559655 TGTGCGCCATTAGTGATATGAAC 59.440 43.478 4.18 0.00 0.00 3.18
31 32 3.559655 GTGCGCCATTAGTGATATGAACA 59.440 43.478 4.18 0.00 0.00 3.18
32 33 3.559655 TGCGCCATTAGTGATATGAACAC 59.440 43.478 4.18 0.00 38.38 3.32
34 35 4.988540 GCGCCATTAGTGATATGAACACTA 59.011 41.667 0.00 0.00 45.10 2.74
44 45 7.201145 AGTGATATGAACACTAATGACGTACC 58.799 38.462 0.00 0.00 45.10 3.34
45 46 7.068348 AGTGATATGAACACTAATGACGTACCT 59.932 37.037 0.00 0.00 45.10 3.08
46 47 7.167635 GTGATATGAACACTAATGACGTACCTG 59.832 40.741 0.00 0.00 35.66 4.00
47 48 3.581755 TGAACACTAATGACGTACCTGC 58.418 45.455 0.00 0.00 0.00 4.85
48 49 3.006003 TGAACACTAATGACGTACCTGCA 59.994 43.478 0.00 0.00 0.00 4.41
49 50 3.887621 ACACTAATGACGTACCTGCAT 57.112 42.857 0.00 0.00 0.00 3.96
50 51 4.994907 ACACTAATGACGTACCTGCATA 57.005 40.909 0.00 0.00 0.00 3.14
51 52 5.531122 ACACTAATGACGTACCTGCATAT 57.469 39.130 0.00 0.00 0.00 1.78
52 53 5.289595 ACACTAATGACGTACCTGCATATG 58.710 41.667 0.00 0.00 0.00 1.78
53 54 4.686091 CACTAATGACGTACCTGCATATGG 59.314 45.833 4.56 0.00 0.00 2.74
54 55 3.838244 AATGACGTACCTGCATATGGT 57.162 42.857 4.56 1.32 41.28 3.55
55 56 2.595124 TGACGTACCTGCATATGGTG 57.405 50.000 6.38 0.00 38.42 4.17
73 74 3.582148 CGCCACTGTGCATCACAT 58.418 55.556 1.29 0.00 43.71 3.21
74 75 2.766239 CGCCACTGTGCATCACATA 58.234 52.632 1.29 0.00 43.71 2.29
75 76 0.374758 CGCCACTGTGCATCACATAC 59.625 55.000 1.29 0.00 43.71 2.39
76 77 0.734889 GCCACTGTGCATCACATACC 59.265 55.000 1.29 0.00 43.71 2.73
77 78 1.382522 CCACTGTGCATCACATACCC 58.617 55.000 1.29 0.00 43.71 3.69
78 79 1.009078 CACTGTGCATCACATACCCG 58.991 55.000 0.00 0.00 43.71 5.28
79 80 0.744414 ACTGTGCATCACATACCCGC 60.744 55.000 0.00 0.00 43.71 6.13
80 81 0.462581 CTGTGCATCACATACCCGCT 60.463 55.000 0.00 0.00 43.71 5.52
81 82 0.744057 TGTGCATCACATACCCGCTG 60.744 55.000 0.00 0.00 39.62 5.18
82 83 1.819208 TGCATCACATACCCGCTGC 60.819 57.895 0.00 0.00 0.00 5.25
83 84 1.819208 GCATCACATACCCGCTGCA 60.819 57.895 0.00 0.00 0.00 4.41
84 85 2.016961 CATCACATACCCGCTGCAC 58.983 57.895 0.00 0.00 0.00 4.57
85 86 1.153168 ATCACATACCCGCTGCACC 60.153 57.895 0.00 0.00 0.00 5.01
86 87 1.909459 ATCACATACCCGCTGCACCA 61.909 55.000 0.00 0.00 0.00 4.17
87 88 1.451927 CACATACCCGCTGCACCAT 60.452 57.895 0.00 0.00 0.00 3.55
88 89 1.031571 CACATACCCGCTGCACCATT 61.032 55.000 0.00 0.00 0.00 3.16
89 90 0.544223 ACATACCCGCTGCACCATTA 59.456 50.000 0.00 0.00 0.00 1.90
90 91 1.065053 ACATACCCGCTGCACCATTAA 60.065 47.619 0.00 0.00 0.00 1.40
91 92 2.229792 CATACCCGCTGCACCATTAAT 58.770 47.619 0.00 0.00 0.00 1.40
92 93 1.674359 TACCCGCTGCACCATTAATG 58.326 50.000 8.58 8.58 0.00 1.90
93 94 0.323360 ACCCGCTGCACCATTAATGT 60.323 50.000 14.25 0.18 0.00 2.71
94 95 0.381801 CCCGCTGCACCATTAATGTC 59.618 55.000 14.25 4.08 0.00 3.06
95 96 0.381801 CCGCTGCACCATTAATGTCC 59.618 55.000 14.25 3.02 0.00 4.02
96 97 1.093972 CGCTGCACCATTAATGTCCA 58.906 50.000 14.25 7.12 0.00 4.02
97 98 1.677576 CGCTGCACCATTAATGTCCAT 59.322 47.619 14.25 0.00 0.00 3.41
98 99 2.877786 CGCTGCACCATTAATGTCCATA 59.122 45.455 14.25 0.00 0.00 2.74
99 100 3.503363 CGCTGCACCATTAATGTCCATAT 59.497 43.478 14.25 0.00 0.00 1.78
100 101 4.022935 CGCTGCACCATTAATGTCCATATT 60.023 41.667 14.25 0.00 0.00 1.28
101 102 5.181056 CGCTGCACCATTAATGTCCATATTA 59.819 40.000 14.25 0.00 0.00 0.98
102 103 6.615088 GCTGCACCATTAATGTCCATATTAG 58.385 40.000 14.25 0.00 0.00 1.73
103 104 6.573664 TGCACCATTAATGTCCATATTAGC 57.426 37.500 14.25 5.37 0.00 3.09
104 105 6.306199 TGCACCATTAATGTCCATATTAGCT 58.694 36.000 14.25 0.00 0.00 3.32
105 106 7.457561 TGCACCATTAATGTCCATATTAGCTA 58.542 34.615 14.25 0.00 0.00 3.32
106 107 8.108999 TGCACCATTAATGTCCATATTAGCTAT 58.891 33.333 14.25 0.00 0.00 2.97
107 108 9.613428 GCACCATTAATGTCCATATTAGCTATA 57.387 33.333 14.25 0.00 0.00 1.31
109 110 9.838339 ACCATTAATGTCCATATTAGCTATAGC 57.162 33.333 17.33 17.33 42.49 2.97
110 111 9.277783 CCATTAATGTCCATATTAGCTATAGCC 57.722 37.037 21.17 3.64 43.38 3.93
115 116 9.813826 AATGTCCATATTAGCTATAGCCTTTTT 57.186 29.630 21.17 4.88 43.38 1.94
116 117 8.848474 TGTCCATATTAGCTATAGCCTTTTTC 57.152 34.615 21.17 5.04 43.38 2.29
117 118 7.883311 TGTCCATATTAGCTATAGCCTTTTTCC 59.117 37.037 21.17 3.19 43.38 3.13
118 119 8.103935 GTCCATATTAGCTATAGCCTTTTTCCT 58.896 37.037 21.17 2.62 43.38 3.36
119 120 9.333961 TCCATATTAGCTATAGCCTTTTTCCTA 57.666 33.333 21.17 1.60 43.38 2.94
120 121 9.959721 CCATATTAGCTATAGCCTTTTTCCTAA 57.040 33.333 21.17 10.62 43.38 2.69
125 126 9.998106 TTAGCTATAGCCTTTTTCCTAATAGTG 57.002 33.333 21.17 0.00 43.38 2.74
166 167 1.614996 TGCCAACCACTACCATGTTG 58.385 50.000 0.00 0.00 39.20 3.33
182 183 4.383649 CCATGTTGAAAAATGAAGAGCACG 59.616 41.667 0.00 0.00 0.00 5.34
183 184 4.891627 TGTTGAAAAATGAAGAGCACGA 57.108 36.364 0.00 0.00 0.00 4.35
190 191 1.160137 ATGAAGAGCACGAGCAAACC 58.840 50.000 7.77 0.00 45.49 3.27
196 197 0.601311 AGCACGAGCAAACCTCTGTC 60.601 55.000 7.77 0.00 45.49 3.51
256 263 9.927668 ATTATTACACATTCAACCAAAGAAAGG 57.072 29.630 0.00 0.00 0.00 3.11
265 272 4.595781 TCAACCAAAGAAAGGGCTAGAGTA 59.404 41.667 0.00 0.00 0.00 2.59
270 277 7.010771 ACCAAAGAAAGGGCTAGAGTATTTTT 58.989 34.615 0.00 0.00 0.00 1.94
306 313 7.716998 ACCGAAAGAAAGACATAGCATTATGAT 59.283 33.333 0.00 0.00 39.22 2.45
340 347 7.414098 CGAGAAAACCACCGATCTATTCATTTT 60.414 37.037 0.00 0.00 0.00 1.82
349 356 8.562052 CACCGATCTATTCATTTTCAATCATGA 58.438 33.333 0.00 0.00 0.00 3.07
400 407 6.732896 AAATTACATCCGGATCTGTAGACT 57.267 37.500 15.88 2.94 0.00 3.24
410 417 3.747529 GGATCTGTAGACTACCTAGCGAC 59.252 52.174 10.14 0.00 0.00 5.19
414 421 2.167281 TGTAGACTACCTAGCGACGACT 59.833 50.000 10.14 0.00 0.00 4.18
416 423 3.749665 AGACTACCTAGCGACGACTAT 57.250 47.619 0.00 0.00 0.00 2.12
424 431 2.476873 AGCGACGACTATAAGCACTG 57.523 50.000 0.00 0.00 0.00 3.66
440 447 2.540265 ACTGAAGTGAGCTGAAGGTG 57.460 50.000 0.00 0.00 0.00 4.00
441 448 1.765314 ACTGAAGTGAGCTGAAGGTGT 59.235 47.619 0.00 0.00 0.00 4.16
444 451 0.471617 AAGTGAGCTGAAGGTGTGCT 59.528 50.000 0.00 0.00 40.02 4.40
448 455 0.036952 GAGCTGAAGGTGTGCTGCTA 60.037 55.000 0.00 0.00 39.04 3.49
462 469 1.459348 TGCTATCATCGCCCCTCCA 60.459 57.895 0.00 0.00 0.00 3.86
464 471 0.326264 GCTATCATCGCCCCTCCATT 59.674 55.000 0.00 0.00 0.00 3.16
465 472 1.947678 GCTATCATCGCCCCTCCATTG 60.948 57.143 0.00 0.00 0.00 2.82
467 474 1.713005 ATCATCGCCCCTCCATTGCT 61.713 55.000 0.00 0.00 0.00 3.91
482 489 4.710865 TCCATTGCTGGCATTCTGAATTAA 59.289 37.500 0.00 0.00 42.80 1.40
494 501 7.174599 GGCATTCTGAATTAAGTGCAGAGATAT 59.825 37.037 13.15 0.00 39.56 1.63
509 516 7.333921 GTGCAGAGATATCATTTCTGGATTAGG 59.666 40.741 17.53 0.00 40.58 2.69
510 517 7.016957 TGCAGAGATATCATTTCTGGATTAGGT 59.983 37.037 17.53 0.00 38.94 3.08
516 523 9.778741 GATATCATTTCTGGATTAGGTGTACAA 57.221 33.333 0.00 0.00 0.00 2.41
519 526 8.506168 TCATTTCTGGATTAGGTGTACAAATC 57.494 34.615 9.39 9.39 0.00 2.17
568 575 1.007387 CAAAAACCGCAGTGGAGCC 60.007 57.895 7.13 0.00 42.00 4.70
569 576 2.551912 AAAAACCGCAGTGGAGCCG 61.552 57.895 7.13 0.00 42.00 5.52
630 665 3.568538 GTGACATTGAACCAATCAGCAC 58.431 45.455 0.00 0.00 39.77 4.40
689 729 0.669625 CGTCCACGTCCTTTTCCCTC 60.670 60.000 0.00 0.00 34.11 4.30
694 734 1.618837 CACGTCCTTTTCCCTCTCTCA 59.381 52.381 0.00 0.00 0.00 3.27
743 783 1.078497 CCGTGCTGGACCTGCATTA 60.078 57.895 26.49 3.61 40.15 1.90
909 973 2.993264 ATCGGACGGACCAACGGT 60.993 61.111 0.00 0.00 39.44 4.83
937 1002 0.748005 ACAGTCAAGCACCGCTGTTT 60.748 50.000 0.00 0.00 39.62 2.83
938 1003 0.381801 CAGTCAAGCACCGCTGTTTT 59.618 50.000 0.00 0.00 39.62 2.43
959 1024 2.672961 TCCATCGCTTGGTTGACTAG 57.327 50.000 4.43 0.00 46.52 2.57
978 1051 3.029483 AGCTAGTTCCCTACCACTACC 57.971 52.381 0.00 0.00 0.00 3.18
982 1055 4.629694 GCTAGTTCCCTACCACTACCAGTA 60.630 50.000 0.00 0.00 0.00 2.74
1005 1091 0.250234 CTCCTCGTTTCCTCATGGCA 59.750 55.000 0.00 0.00 0.00 4.92
1523 1786 5.281727 GTTTCATTTTCAGTTTCTCCGCTT 58.718 37.500 0.00 0.00 0.00 4.68
1533 1796 1.917273 TTCTCCGCTTGCGTGTATAC 58.083 50.000 13.97 0.00 0.00 1.47
1561 2240 1.226018 GCATGTACCGCTTTCACGC 60.226 57.895 0.00 0.00 0.00 5.34
1562 2241 1.635663 GCATGTACCGCTTTCACGCT 61.636 55.000 0.00 0.00 0.00 5.07
1563 2242 0.370273 CATGTACCGCTTTCACGCTC 59.630 55.000 0.00 0.00 0.00 5.03
1564 2243 0.246635 ATGTACCGCTTTCACGCTCT 59.753 50.000 0.00 0.00 0.00 4.09
1565 2244 0.032952 TGTACCGCTTTCACGCTCTT 59.967 50.000 0.00 0.00 0.00 2.85
1566 2245 0.714439 GTACCGCTTTCACGCTCTTC 59.286 55.000 0.00 0.00 0.00 2.87
1569 2263 0.389166 CCGCTTTCACGCTCTTCTCT 60.389 55.000 0.00 0.00 0.00 3.10
1582 2276 3.583806 CTCTTCTCTCTGTGCGTTCAAT 58.416 45.455 0.00 0.00 0.00 2.57
1583 2277 3.993081 CTCTTCTCTCTGTGCGTTCAATT 59.007 43.478 0.00 0.00 0.00 2.32
1584 2278 4.380531 TCTTCTCTCTGTGCGTTCAATTT 58.619 39.130 0.00 0.00 0.00 1.82
1586 2280 5.296780 TCTTCTCTCTGTGCGTTCAATTTTT 59.703 36.000 0.00 0.00 0.00 1.94
1724 2451 1.037493 TCGAGGTCATAATCCCGGTG 58.963 55.000 0.00 0.00 0.00 4.94
1727 2454 1.968493 GAGGTCATAATCCCGGTGCTA 59.032 52.381 0.00 0.00 0.00 3.49
1738 2465 1.302511 CGGTGCTAGCCCAAACTGT 60.303 57.895 13.29 0.00 0.00 3.55
1907 2634 0.955428 ACACAACGGCGATGCTCATT 60.955 50.000 16.62 0.00 0.00 2.57
1992 2735 0.250124 TTGCCTTGTTGATCGACCGT 60.250 50.000 10.69 0.00 0.00 4.83
1994 2737 0.442699 GCCTTGTTGATCGACCGTTC 59.557 55.000 10.69 0.00 0.00 3.95
2045 2802 5.059710 GCTAATCGTTTGCTGATGTTGTTTC 59.940 40.000 0.00 0.00 0.00 2.78
2110 2867 1.943968 GCTGATGAGGTGTACGGCAAA 60.944 52.381 0.00 0.00 35.13 3.68
2125 2882 1.109323 GCAAACTGGTTCTGGGCAGT 61.109 55.000 0.00 0.00 0.00 4.40
2300 3058 6.566079 ACTCCCTGTCATTCTTTCATATGA 57.434 37.500 0.00 0.00 0.00 2.15
2360 3122 4.559862 ACTGACATTTTCTCTGGGTAGG 57.440 45.455 0.00 0.00 0.00 3.18
2371 3133 3.142951 CTCTGGGTAGGTCTCTACATCG 58.857 54.545 5.99 0.00 45.76 3.84
2439 3201 3.773119 CAGGTTAGCCTTTGGTACCTAGA 59.227 47.826 14.36 0.00 44.18 2.43
2440 3202 4.031611 AGGTTAGCCTTTGGTACCTAGAG 58.968 47.826 14.36 8.00 44.18 2.43
2441 3203 4.028825 GGTTAGCCTTTGGTACCTAGAGA 58.971 47.826 14.36 0.00 0.00 3.10
2442 3204 4.468868 GGTTAGCCTTTGGTACCTAGAGAA 59.531 45.833 14.36 0.00 0.00 2.87
2443 3205 5.395435 GGTTAGCCTTTGGTACCTAGAGAAG 60.395 48.000 14.36 9.04 0.00 2.85
2444 3206 3.792515 AGCCTTTGGTACCTAGAGAAGT 58.207 45.455 14.36 0.00 0.00 3.01
2445 3207 3.515901 AGCCTTTGGTACCTAGAGAAGTG 59.484 47.826 14.36 5.46 0.00 3.16
2446 3208 3.863041 CCTTTGGTACCTAGAGAAGTGC 58.137 50.000 14.36 0.00 0.00 4.40
2447 3209 3.260884 CCTTTGGTACCTAGAGAAGTGCA 59.739 47.826 14.36 0.00 0.00 4.57
2448 3210 4.080863 CCTTTGGTACCTAGAGAAGTGCAT 60.081 45.833 14.36 0.00 0.00 3.96
2449 3211 4.471904 TTGGTACCTAGAGAAGTGCATG 57.528 45.455 14.36 0.00 0.00 4.06
2450 3212 2.766263 TGGTACCTAGAGAAGTGCATGG 59.234 50.000 14.36 0.00 0.00 3.66
2451 3213 3.031736 GGTACCTAGAGAAGTGCATGGA 58.968 50.000 4.06 0.00 0.00 3.41
2452 3214 3.643792 GGTACCTAGAGAAGTGCATGGAT 59.356 47.826 4.06 0.00 0.00 3.41
2453 3215 3.834489 ACCTAGAGAAGTGCATGGATG 57.166 47.619 0.00 0.00 0.00 3.51
2454 3216 3.378512 ACCTAGAGAAGTGCATGGATGA 58.621 45.455 0.00 0.00 0.00 2.92
2455 3217 3.776969 ACCTAGAGAAGTGCATGGATGAA 59.223 43.478 0.00 0.00 0.00 2.57
2456 3218 4.125703 CCTAGAGAAGTGCATGGATGAAC 58.874 47.826 0.00 0.00 36.55 3.18
2457 3219 2.996631 AGAGAAGTGCATGGATGAACC 58.003 47.619 0.00 0.00 37.01 3.62
2458 3220 2.019984 GAGAAGTGCATGGATGAACCC 58.980 52.381 0.00 0.00 37.01 4.11
2459 3221 1.355381 AGAAGTGCATGGATGAACCCA 59.645 47.619 0.00 0.00 37.01 4.51
2460 3222 1.474077 GAAGTGCATGGATGAACCCAC 59.526 52.381 0.00 0.00 37.01 4.61
2461 3223 0.700564 AGTGCATGGATGAACCCACT 59.299 50.000 0.00 0.00 37.01 4.00
2483 3245 3.778265 TCCTTCTTGCCCTATTTTGCTT 58.222 40.909 0.00 0.00 0.00 3.91
2591 3368 5.817296 TCCAACATGATGGAAGAAAGATACG 59.183 40.000 21.41 0.00 46.36 3.06
2668 3530 8.512138 ACATAAAGCCACAACTAACTATTGAAC 58.488 33.333 0.00 0.00 0.00 3.18
2843 4070 5.181748 ACACCTTCTCTTGCATCTTCATAC 58.818 41.667 0.00 0.00 0.00 2.39
2873 4100 9.606631 GATATCCTTGACACTATTGTTCTCTTT 57.393 33.333 0.00 0.00 35.47 2.52
2942 4169 2.682352 GGCAGCTCTTCCTCAAATTCTC 59.318 50.000 0.00 0.00 0.00 2.87
3097 4368 7.710907 TGTAATGGTAAGCTAAGCATAGACTTG 59.289 37.037 12.73 0.00 36.60 3.16
3103 4374 7.963465 GGTAAGCTAAGCATAGACTTGTTTTTC 59.037 37.037 12.73 0.00 31.97 2.29
3104 4375 7.751768 AAGCTAAGCATAGACTTGTTTTTCT 57.248 32.000 0.00 0.00 29.88 2.52
3522 4807 9.878667 TTAAAGAACAACTATATGGAACGATCA 57.121 29.630 0.00 0.00 0.00 2.92
3524 4809 8.964476 AAGAACAACTATATGGAACGATCATT 57.036 30.769 0.00 0.00 0.00 2.57
3628 4914 7.815641 TGTGGAACATGTTCTATTATGTTGTG 58.184 34.615 31.81 0.00 45.67 3.33
3646 4932 8.806429 ATGTTGTGTGATTGGATATGAAGTTA 57.194 30.769 0.00 0.00 0.00 2.24
3749 5545 3.980775 ACGCAAAAACTAACATGACATGC 59.019 39.130 15.49 0.00 0.00 4.06
3751 5547 4.622313 CGCAAAAACTAACATGACATGCAT 59.378 37.500 15.49 7.39 37.85 3.96
3770 5566 3.983344 GCATGTGTCCTTGTTTTCATGAC 59.017 43.478 0.00 0.00 35.98 3.06
3778 5582 4.141287 CCTTGTTTTCATGACCCAGTGTA 58.859 43.478 0.00 0.00 0.00 2.90
3840 5646 4.637483 ATTAAGCACATGTTCCGAATGG 57.363 40.909 0.00 0.00 0.00 3.16
3875 5681 4.572985 TGAGATGTTTTTGCAGTCCAAG 57.427 40.909 0.00 0.00 34.34 3.61
3883 5689 9.722056 GATGTTTTTGCAGTCCAAGTTATATAG 57.278 33.333 0.00 0.00 34.34 1.31
3993 5799 2.176045 GGAATGGAAAATTGGGTCCGT 58.824 47.619 0.15 0.00 36.65 4.69
4024 5830 2.159599 GCTTGCGTTCCATCTTCTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
4053 5859 5.945784 TGGTCTCGAAAGGATCAAATCATTT 59.054 36.000 0.00 0.00 44.85 2.32
4107 5913 3.543665 TGGTTGTTAGTTGTACACACCC 58.456 45.455 0.00 0.00 31.47 4.61
4123 5958 6.875972 ACACACCCTCATTTCTAGTTATCT 57.124 37.500 0.00 0.00 0.00 1.98
4125 5960 7.106239 ACACACCCTCATTTCTAGTTATCTTG 58.894 38.462 0.00 0.00 0.00 3.02
4171 6007 3.333029 TGCAATGCTCTGTTGTAGCTA 57.667 42.857 6.82 0.00 40.73 3.32
4193 6029 5.615925 ATCCAAGTCATGTACCCTACTTC 57.384 43.478 0.00 0.00 29.93 3.01
4205 6041 9.396022 CATGTACCCTACTTCTTGATGTATTTT 57.604 33.333 0.00 0.00 0.00 1.82
4225 6061 0.389426 GCCTTGTTGCCTTGCATCAG 60.389 55.000 0.00 0.00 39.04 2.90
4228 6064 2.224113 CCTTGTTGCCTTGCATCAGTTT 60.224 45.455 0.00 0.00 39.04 2.66
4229 6065 3.460103 CTTGTTGCCTTGCATCAGTTTT 58.540 40.909 0.00 0.00 39.04 2.43
4230 6066 3.096489 TGTTGCCTTGCATCAGTTTTC 57.904 42.857 0.00 0.00 38.76 2.29
4281 6117 2.356667 CAGAGGGCAGGGGTTTCC 59.643 66.667 0.00 0.00 0.00 3.13
4337 6173 3.287222 TGAAACTTTGAGTTCCCTGTGG 58.713 45.455 0.00 0.00 37.47 4.17
4367 6203 8.723942 AAGTGAACATACTCCTTGAATATGTC 57.276 34.615 0.00 0.00 38.33 3.06
4514 6350 2.682155 TGTTGAAGCACCCCAAAAAC 57.318 45.000 0.00 0.00 0.00 2.43
4528 6364 6.269077 CACCCCAAAAACTTCCCTTTTATACT 59.731 38.462 0.00 0.00 0.00 2.12
4529 6365 6.269077 ACCCCAAAAACTTCCCTTTTATACTG 59.731 38.462 0.00 0.00 0.00 2.74
4534 6370 8.306761 CAAAAACTTCCCTTTTATACTGATGCT 58.693 33.333 0.00 0.00 0.00 3.79
4539 6375 7.988028 ACTTCCCTTTTATACTGATGCTAGTTC 59.012 37.037 0.00 0.00 32.19 3.01
4545 6381 2.476873 ACTGATGCTAGTTCGCTACG 57.523 50.000 0.00 0.00 0.00 3.51
4564 6400 2.496470 ACGTGAAGGGACCTAGATGTTC 59.504 50.000 0.00 0.00 0.00 3.18
4566 6402 3.108376 GTGAAGGGACCTAGATGTTCCT 58.892 50.000 0.00 0.00 46.80 3.36
4567 6403 4.287552 GTGAAGGGACCTAGATGTTCCTA 58.712 47.826 0.00 0.00 43.86 2.94
4568 6404 4.342665 GTGAAGGGACCTAGATGTTCCTAG 59.657 50.000 0.00 0.00 43.86 3.02
4569 6405 4.232122 TGAAGGGACCTAGATGTTCCTAGA 59.768 45.833 0.00 0.00 43.86 2.43
4575 6415 2.451273 CCTAGATGTTCCTAGAGGGGGA 59.549 54.545 0.00 0.00 38.68 4.81
4580 6420 1.231197 TTCCTAGAGGGGGAGGGGA 60.231 63.158 0.00 0.00 34.06 4.81
4588 6428 1.152271 GAGGGGGAGGGGATGAATAGA 59.848 57.143 0.00 0.00 0.00 1.98
4595 6435 3.467803 GAGGGGATGAATAGACGGTTTG 58.532 50.000 0.00 0.00 0.00 2.93
4606 6446 6.038825 TGAATAGACGGTTTGTGAACAATTGT 59.961 34.615 4.92 4.92 37.51 2.71
4694 6535 8.735692 TTTTATTGACTCATGATGTAGCATCA 57.264 30.769 13.27 13.27 0.00 3.07
4702 6543 5.798132 TCATGATGTAGCATCAAGGGATAC 58.202 41.667 14.62 0.00 30.87 2.24
4721 6562 8.150945 AGGGATACAATCATAATGAGTACACAC 58.849 37.037 0.00 0.00 39.74 3.82
4725 6566 5.105106 ACAATCATAATGAGTACACACCCGA 60.105 40.000 0.00 0.00 0.00 5.14
4727 6568 3.764972 TCATAATGAGTACACACCCGACA 59.235 43.478 0.00 0.00 0.00 4.35
4765 6616 0.251386 ACACAACCAACACACACCCA 60.251 50.000 0.00 0.00 0.00 4.51
4766 6617 0.172352 CACAACCAACACACACCCAC 59.828 55.000 0.00 0.00 0.00 4.61
4767 6618 0.251386 ACAACCAACACACACCCACA 60.251 50.000 0.00 0.00 0.00 4.17
4768 6619 0.172352 CAACCAACACACACCCACAC 59.828 55.000 0.00 0.00 0.00 3.82
4769 6620 0.251386 AACCAACACACACCCACACA 60.251 50.000 0.00 0.00 0.00 3.72
4770 6621 0.963355 ACCAACACACACCCACACAC 60.963 55.000 0.00 0.00 0.00 3.82
4771 6622 0.962855 CCAACACACACCCACACACA 60.963 55.000 0.00 0.00 0.00 3.72
4772 6623 0.170116 CAACACACACCCACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
4777 6628 1.300620 ACACCCACACACACGATCG 60.301 57.895 14.88 14.88 0.00 3.69
4802 6653 3.181530 CCGACAAAGAGCAAAGTCATACG 60.182 47.826 0.00 0.00 0.00 3.06
4803 6654 3.181530 CGACAAAGAGCAAAGTCATACGG 60.182 47.826 0.00 0.00 0.00 4.02
4808 6659 4.592485 AGAGCAAAGTCATACGGGATAG 57.408 45.455 0.00 0.00 0.00 2.08
4817 6668 4.707448 AGTCATACGGGATAGAAGCTATGG 59.293 45.833 0.00 0.00 0.00 2.74
4829 6680 3.164269 CTATGGCTGGGCGGAGGT 61.164 66.667 0.00 0.00 0.00 3.85
4852 6703 6.710295 GGTAGAAATGAAAAACCCAAAGCAAT 59.290 34.615 0.00 0.00 0.00 3.56
4854 6705 6.121590 AGAAATGAAAAACCCAAAGCAATGT 58.878 32.000 0.00 0.00 0.00 2.71
4858 6709 8.462589 AATGAAAAACCCAAAGCAATGTAAAT 57.537 26.923 0.00 0.00 0.00 1.40
4868 6719 8.199449 CCCAAAGCAATGTAAATAGTGATTGAT 58.801 33.333 0.00 0.00 0.00 2.57
4947 6798 6.983906 AGAAAGGTTCTCCAAAATTGATGT 57.016 33.333 0.00 0.00 34.07 3.06
4957 6808 6.777091 TCTCCAAAATTGATGTCTCCAAGAAA 59.223 34.615 0.00 0.00 0.00 2.52
4979 6830 3.268603 CGACGTGCAAGTGCCACA 61.269 61.111 10.87 0.00 41.18 4.17
4980 6831 2.606961 CGACGTGCAAGTGCCACAT 61.607 57.895 10.87 0.00 41.18 3.21
4981 6832 1.081906 GACGTGCAAGTGCCACATG 60.082 57.895 10.87 0.00 41.18 3.21
4982 6833 1.785041 GACGTGCAAGTGCCACATGT 61.785 55.000 10.87 0.00 41.18 3.21
4983 6834 1.359833 CGTGCAAGTGCCACATGTT 59.640 52.632 0.00 0.00 41.18 2.71
4984 6835 0.935831 CGTGCAAGTGCCACATGTTG 60.936 55.000 0.00 0.00 41.18 3.33
4988 6839 0.827089 CAAGTGCCACATGTTGGGGA 60.827 55.000 13.87 4.65 46.22 4.81
4989 6840 0.105760 AAGTGCCACATGTTGGGGAA 60.106 50.000 13.87 0.00 46.22 3.97
4990 6841 1.665442 GTGCCACATGTTGGGGAAC 59.335 57.895 13.87 6.31 46.22 3.62
4991 6842 1.900981 TGCCACATGTTGGGGAACG 60.901 57.895 13.87 0.00 46.22 3.95
4992 6843 1.901464 GCCACATGTTGGGGAACGT 60.901 57.895 13.87 0.00 46.22 3.99
4993 6844 0.606944 GCCACATGTTGGGGAACGTA 60.607 55.000 13.87 0.00 46.22 3.57
4994 6845 1.448985 CCACATGTTGGGGAACGTAG 58.551 55.000 0.00 0.00 46.22 3.51
4995 6846 0.802494 CACATGTTGGGGAACGTAGC 59.198 55.000 0.00 0.00 0.00 3.58
4996 6847 0.398696 ACATGTTGGGGAACGTAGCA 59.601 50.000 0.00 0.00 0.00 3.49
4997 6848 0.802494 CATGTTGGGGAACGTAGCAC 59.198 55.000 0.00 0.00 0.00 4.40
4998 6849 0.398696 ATGTTGGGGAACGTAGCACA 59.601 50.000 0.00 0.00 0.00 4.57
4999 6850 0.180642 TGTTGGGGAACGTAGCACAA 59.819 50.000 0.00 0.00 0.00 3.33
5000 6851 1.310904 GTTGGGGAACGTAGCACAAA 58.689 50.000 0.00 0.00 0.00 2.83
5001 6852 1.883926 GTTGGGGAACGTAGCACAAAT 59.116 47.619 0.00 0.00 0.00 2.32
5002 6853 2.279935 TGGGGAACGTAGCACAAATT 57.720 45.000 0.00 0.00 0.00 1.82
5003 6854 2.156098 TGGGGAACGTAGCACAAATTC 58.844 47.619 0.00 0.00 0.00 2.17
5004 6855 2.156098 GGGGAACGTAGCACAAATTCA 58.844 47.619 0.00 0.00 0.00 2.57
5005 6856 2.554893 GGGGAACGTAGCACAAATTCAA 59.445 45.455 0.00 0.00 0.00 2.69
5006 6857 3.004944 GGGGAACGTAGCACAAATTCAAA 59.995 43.478 0.00 0.00 0.00 2.69
5007 6858 4.500035 GGGGAACGTAGCACAAATTCAAAA 60.500 41.667 0.00 0.00 0.00 2.44
5008 6859 5.227152 GGGAACGTAGCACAAATTCAAAAT 58.773 37.500 0.00 0.00 0.00 1.82
5009 6860 5.694458 GGGAACGTAGCACAAATTCAAAATT 59.306 36.000 0.00 0.00 0.00 1.82
5010 6861 6.201997 GGGAACGTAGCACAAATTCAAAATTT 59.798 34.615 0.00 0.00 0.00 1.82
5011 6862 7.254624 GGGAACGTAGCACAAATTCAAAATTTT 60.255 33.333 0.00 0.00 0.00 1.82
5012 6863 7.792048 GGAACGTAGCACAAATTCAAAATTTTC 59.208 33.333 0.00 0.00 0.00 2.29
5013 6864 8.419076 AACGTAGCACAAATTCAAAATTTTCT 57.581 26.923 0.00 0.00 0.00 2.52
5014 6865 9.522804 AACGTAGCACAAATTCAAAATTTTCTA 57.477 25.926 0.00 0.00 0.00 2.10
5015 6866 8.964150 ACGTAGCACAAATTCAAAATTTTCTAC 58.036 29.630 0.00 5.68 0.00 2.59
5016 6867 8.147172 CGTAGCACAAATTCAAAATTTTCTACG 58.853 33.333 19.51 19.51 35.54 3.51
5017 6868 6.876804 AGCACAAATTCAAAATTTTCTACGC 58.123 32.000 0.00 0.00 0.00 4.42
5018 6869 6.478344 AGCACAAATTCAAAATTTTCTACGCA 59.522 30.769 0.00 0.00 0.00 5.24
5019 6870 7.171337 AGCACAAATTCAAAATTTTCTACGCAT 59.829 29.630 0.00 0.00 0.00 4.73
5020 6871 7.475256 GCACAAATTCAAAATTTTCTACGCATC 59.525 33.333 0.00 0.00 0.00 3.91
5021 6872 8.486383 CACAAATTCAAAATTTTCTACGCATCA 58.514 29.630 0.00 0.00 0.00 3.07
5022 6873 8.487176 ACAAATTCAAAATTTTCTACGCATCAC 58.513 29.630 0.00 0.00 0.00 3.06
5023 6874 7.581011 AATTCAAAATTTTCTACGCATCACC 57.419 32.000 0.00 0.00 0.00 4.02
5024 6875 5.697473 TCAAAATTTTCTACGCATCACCA 57.303 34.783 0.00 0.00 0.00 4.17
5025 6876 6.078202 TCAAAATTTTCTACGCATCACCAA 57.922 33.333 0.00 0.00 0.00 3.67
5026 6877 6.148948 TCAAAATTTTCTACGCATCACCAAG 58.851 36.000 0.00 0.00 0.00 3.61
5027 6878 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
5028 6879 6.515272 AAATTTTCTACGCATCACCAAGAT 57.485 33.333 0.00 0.00 37.48 2.40
5029 6880 6.515272 AATTTTCTACGCATCACCAAGATT 57.485 33.333 0.00 0.00 33.72 2.40
5030 6881 7.624360 AATTTTCTACGCATCACCAAGATTA 57.376 32.000 0.00 0.00 33.72 1.75
5031 6882 7.624360 ATTTTCTACGCATCACCAAGATTAA 57.376 32.000 0.00 0.00 33.72 1.40
5032 6883 7.624360 TTTTCTACGCATCACCAAGATTAAT 57.376 32.000 0.00 0.00 33.72 1.40
5033 6884 6.844696 TTCTACGCATCACCAAGATTAATC 57.155 37.500 7.41 7.41 33.72 1.75
5034 6885 6.161855 TCTACGCATCACCAAGATTAATCT 57.838 37.500 12.37 12.37 39.22 2.40
5035 6886 7.284919 TCTACGCATCACCAAGATTAATCTA 57.715 36.000 18.23 2.90 35.76 1.98
5036 6887 7.896811 TCTACGCATCACCAAGATTAATCTAT 58.103 34.615 18.23 5.22 35.76 1.98
5037 6888 6.791887 ACGCATCACCAAGATTAATCTATG 57.208 37.500 18.23 16.96 35.76 2.23
5038 6889 5.702670 ACGCATCACCAAGATTAATCTATGG 59.297 40.000 27.55 27.55 39.18 2.74
5039 6890 5.934043 CGCATCACCAAGATTAATCTATGGA 59.066 40.000 31.74 22.04 37.92 3.41
5040 6891 6.091849 CGCATCACCAAGATTAATCTATGGAG 59.908 42.308 31.74 27.28 37.92 3.86
5041 6892 7.164122 GCATCACCAAGATTAATCTATGGAGA 58.836 38.462 31.74 29.66 38.10 3.71
5042 6893 7.828223 GCATCACCAAGATTAATCTATGGAGAT 59.172 37.037 31.74 30.13 40.83 2.75
5043 6894 9.736414 CATCACCAAGATTAATCTATGGAGATT 57.264 33.333 30.06 21.86 43.74 2.40
5055 6906 7.609097 ATCTATGGAGATTCTAGCAACAAGA 57.391 36.000 0.00 0.00 39.56 3.02
5056 6907 7.048629 TCTATGGAGATTCTAGCAACAAGAG 57.951 40.000 0.00 0.00 0.00 2.85
5057 6908 5.946942 ATGGAGATTCTAGCAACAAGAGA 57.053 39.130 0.00 0.00 0.00 3.10
5058 6909 5.336150 TGGAGATTCTAGCAACAAGAGAG 57.664 43.478 0.00 0.00 0.00 3.20
5059 6910 4.161189 TGGAGATTCTAGCAACAAGAGAGG 59.839 45.833 0.00 0.00 0.00 3.69
5060 6911 4.442753 GGAGATTCTAGCAACAAGAGAGGG 60.443 50.000 0.00 0.00 0.00 4.30
5061 6912 4.357325 AGATTCTAGCAACAAGAGAGGGA 58.643 43.478 0.00 0.00 0.00 4.20
5062 6913 4.405358 AGATTCTAGCAACAAGAGAGGGAG 59.595 45.833 0.00 0.00 0.00 4.30
5063 6914 3.458044 TCTAGCAACAAGAGAGGGAGA 57.542 47.619 0.00 0.00 0.00 3.71
5064 6915 3.360867 TCTAGCAACAAGAGAGGGAGAG 58.639 50.000 0.00 0.00 0.00 3.20
5065 6916 1.274712 AGCAACAAGAGAGGGAGAGG 58.725 55.000 0.00 0.00 0.00 3.69
5066 6917 1.203237 AGCAACAAGAGAGGGAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
5067 6918 1.836802 GCAACAAGAGAGGGAGAGGAT 59.163 52.381 0.00 0.00 0.00 3.24
5068 6919 2.419851 GCAACAAGAGAGGGAGAGGATG 60.420 54.545 0.00 0.00 0.00 3.51
5069 6920 3.102972 CAACAAGAGAGGGAGAGGATGA 58.897 50.000 0.00 0.00 0.00 2.92
5070 6921 3.030873 ACAAGAGAGGGAGAGGATGAG 57.969 52.381 0.00 0.00 0.00 2.90
5071 6922 2.584965 ACAAGAGAGGGAGAGGATGAGA 59.415 50.000 0.00 0.00 0.00 3.27
5072 6923 3.012274 ACAAGAGAGGGAGAGGATGAGAA 59.988 47.826 0.00 0.00 0.00 2.87
5073 6924 4.225573 CAAGAGAGGGAGAGGATGAGAAT 58.774 47.826 0.00 0.00 0.00 2.40
5074 6925 4.118168 AGAGAGGGAGAGGATGAGAATC 57.882 50.000 0.00 0.00 0.00 2.52
5075 6926 3.728990 AGAGAGGGAGAGGATGAGAATCT 59.271 47.826 0.00 0.00 34.92 2.40
5076 6927 4.170647 AGAGAGGGAGAGGATGAGAATCTT 59.829 45.833 0.00 0.00 34.92 2.40
5077 6928 4.482990 AGAGGGAGAGGATGAGAATCTTC 58.517 47.826 0.00 0.00 38.45 2.87
5078 6929 4.078688 AGAGGGAGAGGATGAGAATCTTCA 60.079 45.833 1.39 0.00 40.73 3.02
5079 6930 4.830138 AGGGAGAGGATGAGAATCTTCAT 58.170 43.478 1.39 0.00 40.73 2.57
5080 6931 5.975113 AGGGAGAGGATGAGAATCTTCATA 58.025 41.667 1.39 0.00 40.73 2.15
5081 6932 5.779771 AGGGAGAGGATGAGAATCTTCATAC 59.220 44.000 1.39 0.00 40.73 2.39
5082 6933 5.046663 GGGAGAGGATGAGAATCTTCATACC 60.047 48.000 1.39 0.00 38.90 2.73
5083 6934 5.779771 GGAGAGGATGAGAATCTTCATACCT 59.220 44.000 0.00 0.00 38.90 3.08
5084 6935 6.269769 GGAGAGGATGAGAATCTTCATACCTT 59.730 42.308 0.00 0.00 38.90 3.50
5085 6936 7.202084 GGAGAGGATGAGAATCTTCATACCTTT 60.202 40.741 0.00 0.00 38.90 3.11
5086 6937 7.507829 AGAGGATGAGAATCTTCATACCTTTG 58.492 38.462 0.00 0.00 38.90 2.77
5087 6938 7.346698 AGAGGATGAGAATCTTCATACCTTTGA 59.653 37.037 0.00 0.00 38.90 2.69
5088 6939 7.865820 AGGATGAGAATCTTCATACCTTTGAA 58.134 34.615 2.65 0.00 38.90 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.252127 CTAATGGCGCACAACACCCG 62.252 60.000 10.83 0.00 0.00 5.28
2 3 1.241315 ACTAATGGCGCACAACACCC 61.241 55.000 10.83 0.00 0.00 4.61
3 4 0.109781 CACTAATGGCGCACAACACC 60.110 55.000 10.83 0.00 0.00 4.16
4 5 0.871722 TCACTAATGGCGCACAACAC 59.128 50.000 10.83 0.00 0.00 3.32
5 6 1.819928 ATCACTAATGGCGCACAACA 58.180 45.000 10.83 0.00 0.00 3.33
6 7 3.559655 TCATATCACTAATGGCGCACAAC 59.440 43.478 10.83 0.00 0.00 3.32
7 8 3.802866 TCATATCACTAATGGCGCACAA 58.197 40.909 10.83 0.00 0.00 3.33
8 9 3.467374 TCATATCACTAATGGCGCACA 57.533 42.857 10.83 5.20 0.00 4.57
9 10 3.559655 TGTTCATATCACTAATGGCGCAC 59.440 43.478 10.83 0.00 0.00 5.34
10 11 3.559655 GTGTTCATATCACTAATGGCGCA 59.440 43.478 10.83 0.00 33.59 6.09
11 12 3.809832 AGTGTTCATATCACTAATGGCGC 59.190 43.478 0.00 0.00 43.17 6.53
18 19 8.347771 GGTACGTCATTAGTGTTCATATCACTA 58.652 37.037 0.00 2.29 43.17 2.74
19 20 7.068348 AGGTACGTCATTAGTGTTCATATCACT 59.932 37.037 0.00 4.11 46.10 3.41
20 21 7.167635 CAGGTACGTCATTAGTGTTCATATCAC 59.832 40.741 0.00 0.00 36.22 3.06
21 22 7.200455 CAGGTACGTCATTAGTGTTCATATCA 58.800 38.462 0.00 0.00 0.00 2.15
22 23 6.144080 GCAGGTACGTCATTAGTGTTCATATC 59.856 42.308 0.00 0.00 0.00 1.63
23 24 5.983720 GCAGGTACGTCATTAGTGTTCATAT 59.016 40.000 0.00 0.00 0.00 1.78
24 25 5.105675 TGCAGGTACGTCATTAGTGTTCATA 60.106 40.000 0.00 0.00 0.00 2.15
25 26 4.181578 GCAGGTACGTCATTAGTGTTCAT 58.818 43.478 0.00 0.00 0.00 2.57
26 27 3.006003 TGCAGGTACGTCATTAGTGTTCA 59.994 43.478 0.00 0.00 0.00 3.18
27 28 3.581755 TGCAGGTACGTCATTAGTGTTC 58.418 45.455 0.00 0.00 0.00 3.18
28 29 3.671008 TGCAGGTACGTCATTAGTGTT 57.329 42.857 0.00 0.00 0.00 3.32
29 30 3.887621 ATGCAGGTACGTCATTAGTGT 57.112 42.857 0.00 0.00 0.00 3.55
30 31 4.686091 CCATATGCAGGTACGTCATTAGTG 59.314 45.833 0.00 0.00 0.00 2.74
31 32 4.344102 ACCATATGCAGGTACGTCATTAGT 59.656 41.667 0.00 0.00 37.67 2.24
32 33 4.686091 CACCATATGCAGGTACGTCATTAG 59.314 45.833 0.00 0.00 37.23 1.73
33 34 4.627058 CACCATATGCAGGTACGTCATTA 58.373 43.478 0.00 0.00 37.23 1.90
34 35 3.466836 CACCATATGCAGGTACGTCATT 58.533 45.455 0.00 0.00 37.23 2.57
35 36 3.111853 CACCATATGCAGGTACGTCAT 57.888 47.619 0.00 0.00 37.23 3.06
36 37 2.595124 CACCATATGCAGGTACGTCA 57.405 50.000 0.00 0.00 37.23 4.35
51 52 4.953010 ATGCACAGTGGCGCACCA 62.953 61.111 10.83 0.00 46.51 4.17
52 53 4.107051 GATGCACAGTGGCGCACC 62.107 66.667 10.83 0.00 41.79 5.01
53 54 3.356267 TGATGCACAGTGGCGCAC 61.356 61.111 10.83 5.73 41.79 5.34
54 55 3.356267 GTGATGCACAGTGGCGCA 61.356 61.111 10.83 11.37 43.45 6.09
55 56 3.356267 TGTGATGCACAGTGGCGC 61.356 61.111 0.00 0.00 39.62 6.53
63 64 2.016961 CAGCGGGTATGTGATGCAC 58.983 57.895 0.00 0.00 34.56 4.57
64 65 1.819208 GCAGCGGGTATGTGATGCA 60.819 57.895 0.00 0.00 33.92 3.96
65 66 1.819208 TGCAGCGGGTATGTGATGC 60.819 57.895 0.00 0.00 0.00 3.91
66 67 1.439353 GGTGCAGCGGGTATGTGATG 61.439 60.000 0.00 0.00 0.00 3.07
67 68 1.153168 GGTGCAGCGGGTATGTGAT 60.153 57.895 0.00 0.00 0.00 3.06
68 69 1.909459 ATGGTGCAGCGGGTATGTGA 61.909 55.000 11.91 0.00 0.00 3.58
69 70 1.031571 AATGGTGCAGCGGGTATGTG 61.032 55.000 11.91 0.00 0.00 3.21
70 71 0.544223 TAATGGTGCAGCGGGTATGT 59.456 50.000 11.91 0.00 0.00 2.29
71 72 1.674359 TTAATGGTGCAGCGGGTATG 58.326 50.000 11.91 0.00 0.00 2.39
72 73 2.229792 CATTAATGGTGCAGCGGGTAT 58.770 47.619 11.91 0.00 0.00 2.73
73 74 1.065053 ACATTAATGGTGCAGCGGGTA 60.065 47.619 19.37 0.07 0.00 3.69
74 75 0.323360 ACATTAATGGTGCAGCGGGT 60.323 50.000 19.37 1.10 0.00 5.28
75 76 0.381801 GACATTAATGGTGCAGCGGG 59.618 55.000 19.37 0.00 0.00 6.13
76 77 0.381801 GGACATTAATGGTGCAGCGG 59.618 55.000 19.37 0.00 0.00 5.52
77 78 1.093972 TGGACATTAATGGTGCAGCG 58.906 50.000 19.37 0.00 32.59 5.18
78 79 5.458041 AATATGGACATTAATGGTGCAGC 57.542 39.130 19.37 9.47 39.98 5.25
79 80 6.432162 AGCTAATATGGACATTAATGGTGCAG 59.568 38.462 19.37 6.60 39.98 4.41
80 81 6.306199 AGCTAATATGGACATTAATGGTGCA 58.694 36.000 19.37 15.23 40.90 4.57
81 82 6.824305 AGCTAATATGGACATTAATGGTGC 57.176 37.500 19.37 10.60 0.00 5.01
83 84 9.838339 GCTATAGCTAATATGGACATTAATGGT 57.162 33.333 17.75 5.43 38.21 3.55
84 85 9.277783 GGCTATAGCTAATATGGACATTAATGG 57.722 37.037 23.53 2.26 41.70 3.16
89 90 9.813826 AAAAAGGCTATAGCTAATATGGACATT 57.186 29.630 23.53 1.13 41.70 2.71
90 91 9.454859 GAAAAAGGCTATAGCTAATATGGACAT 57.545 33.333 23.53 0.00 41.70 3.06
91 92 7.883311 GGAAAAAGGCTATAGCTAATATGGACA 59.117 37.037 23.53 0.00 41.70 4.02
92 93 8.103935 AGGAAAAAGGCTATAGCTAATATGGAC 58.896 37.037 23.53 4.34 41.70 4.02
93 94 8.219660 AGGAAAAAGGCTATAGCTAATATGGA 57.780 34.615 23.53 0.00 41.70 3.41
94 95 9.959721 TTAGGAAAAAGGCTATAGCTAATATGG 57.040 33.333 23.53 0.00 41.70 2.74
99 100 9.998106 CACTATTAGGAAAAAGGCTATAGCTAA 57.002 33.333 23.53 12.01 41.70 3.09
100 101 9.375974 TCACTATTAGGAAAAAGGCTATAGCTA 57.624 33.333 23.53 0.00 41.70 3.32
101 102 8.263854 TCACTATTAGGAAAAAGGCTATAGCT 57.736 34.615 23.53 7.69 41.70 3.32
102 103 8.904099 TTCACTATTAGGAAAAAGGCTATAGC 57.096 34.615 16.78 16.78 41.14 2.97
104 105 9.321562 CGTTTCACTATTAGGAAAAAGGCTATA 57.678 33.333 8.17 0.00 35.03 1.31
105 106 8.044908 TCGTTTCACTATTAGGAAAAAGGCTAT 58.955 33.333 8.17 0.00 35.03 2.97
106 107 7.388437 TCGTTTCACTATTAGGAAAAAGGCTA 58.612 34.615 8.17 0.00 35.03 3.93
107 108 6.235664 TCGTTTCACTATTAGGAAAAAGGCT 58.764 36.000 8.17 0.00 35.03 4.58
108 109 6.490566 TCGTTTCACTATTAGGAAAAAGGC 57.509 37.500 8.17 0.00 35.03 4.35
109 110 7.389607 TCCTTCGTTTCACTATTAGGAAAAAGG 59.610 37.037 18.50 18.50 39.80 3.11
110 111 8.319143 TCCTTCGTTTCACTATTAGGAAAAAG 57.681 34.615 8.17 8.88 35.03 2.27
111 112 8.680039 TTCCTTCGTTTCACTATTAGGAAAAA 57.320 30.769 0.00 0.00 37.37 1.94
112 113 8.857694 ATTCCTTCGTTTCACTATTAGGAAAA 57.142 30.769 0.00 0.85 41.91 2.29
113 114 8.726988 CAATTCCTTCGTTTCACTATTAGGAAA 58.273 33.333 0.00 0.46 41.91 3.13
114 115 7.148306 GCAATTCCTTCGTTTCACTATTAGGAA 60.148 37.037 0.00 0.00 42.56 3.36
115 116 6.315393 GCAATTCCTTCGTTTCACTATTAGGA 59.685 38.462 0.00 0.00 0.00 2.94
116 117 6.093495 TGCAATTCCTTCGTTTCACTATTAGG 59.907 38.462 0.00 0.00 0.00 2.69
117 118 7.072177 TGCAATTCCTTCGTTTCACTATTAG 57.928 36.000 0.00 0.00 0.00 1.73
118 119 7.441890 TTGCAATTCCTTCGTTTCACTATTA 57.558 32.000 0.00 0.00 0.00 0.98
119 120 5.957842 TGCAATTCCTTCGTTTCACTATT 57.042 34.783 0.00 0.00 0.00 1.73
120 121 5.957842 TTGCAATTCCTTCGTTTCACTAT 57.042 34.783 0.00 0.00 0.00 2.12
121 122 5.957842 ATTGCAATTCCTTCGTTTCACTA 57.042 34.783 5.99 0.00 0.00 2.74
122 123 4.853924 ATTGCAATTCCTTCGTTTCACT 57.146 36.364 5.99 0.00 0.00 3.41
123 124 5.905480 AAATTGCAATTCCTTCGTTTCAC 57.095 34.783 24.28 0.00 0.00 3.18
124 125 6.713520 CAAAAATTGCAATTCCTTCGTTTCA 58.286 32.000 24.28 0.00 0.00 2.69
166 167 3.542712 TGCTCGTGCTCTTCATTTTTC 57.457 42.857 11.19 0.00 40.48 2.29
182 183 3.512033 AGATACGACAGAGGTTTGCTC 57.488 47.619 0.00 0.00 0.00 4.26
183 184 4.038162 GGATAGATACGACAGAGGTTTGCT 59.962 45.833 0.00 0.00 0.00 3.91
190 191 5.419760 TTTGACGGATAGATACGACAGAG 57.580 43.478 0.05 0.00 39.67 3.35
196 197 6.897259 TTTTCCTTTTGACGGATAGATACG 57.103 37.500 0.00 0.00 40.74 3.06
240 247 4.998051 TCTAGCCCTTTCTTTGGTTGAAT 58.002 39.130 0.00 0.00 0.00 2.57
241 248 4.141251 ACTCTAGCCCTTTCTTTGGTTGAA 60.141 41.667 0.00 0.00 0.00 2.69
270 277 5.099575 GTCTTTCTTTCGGTGCTTGAAAAA 58.900 37.500 0.00 0.00 35.11 1.94
271 278 4.156922 TGTCTTTCTTTCGGTGCTTGAAAA 59.843 37.500 0.00 0.00 35.11 2.29
321 328 6.828273 TGATTGAAAATGAATAGATCGGTGGT 59.172 34.615 0.00 0.00 0.00 4.16
322 329 7.263100 TGATTGAAAATGAATAGATCGGTGG 57.737 36.000 0.00 0.00 0.00 4.61
323 330 8.562052 TCATGATTGAAAATGAATAGATCGGTG 58.438 33.333 0.00 0.00 29.97 4.94
324 331 8.681486 TCATGATTGAAAATGAATAGATCGGT 57.319 30.769 0.00 0.00 29.97 4.69
371 378 9.489084 CTACAGATCCGGATGTAATTTTTATCA 57.511 33.333 24.82 0.00 31.81 2.15
372 379 9.706691 TCTACAGATCCGGATGTAATTTTTATC 57.293 33.333 24.82 3.03 31.81 1.75
373 380 9.490379 GTCTACAGATCCGGATGTAATTTTTAT 57.510 33.333 24.82 0.00 31.81 1.40
374 381 8.701895 AGTCTACAGATCCGGATGTAATTTTTA 58.298 33.333 24.82 0.00 31.81 1.52
378 385 6.208994 GGTAGTCTACAGATCCGGATGTAATT 59.791 42.308 24.82 8.21 31.81 1.40
381 388 4.350225 AGGTAGTCTACAGATCCGGATGTA 59.650 45.833 24.82 19.14 0.00 2.29
382 389 3.138653 AGGTAGTCTACAGATCCGGATGT 59.861 47.826 24.82 19.03 0.00 3.06
383 390 3.757270 AGGTAGTCTACAGATCCGGATG 58.243 50.000 24.82 13.25 0.00 3.51
385 392 3.244491 GCTAGGTAGTCTACAGATCCGGA 60.244 52.174 6.61 6.61 0.00 5.14
388 395 3.747529 GTCGCTAGGTAGTCTACAGATCC 59.252 52.174 12.08 0.00 0.00 3.36
389 396 3.429543 CGTCGCTAGGTAGTCTACAGATC 59.570 52.174 12.08 0.00 0.00 2.75
390 397 3.069300 TCGTCGCTAGGTAGTCTACAGAT 59.931 47.826 12.08 0.32 0.00 2.90
391 398 2.428530 TCGTCGCTAGGTAGTCTACAGA 59.571 50.000 12.08 0.00 0.00 3.41
392 399 2.539274 GTCGTCGCTAGGTAGTCTACAG 59.461 54.545 12.08 3.02 0.00 2.74
393 400 2.167281 AGTCGTCGCTAGGTAGTCTACA 59.833 50.000 12.08 0.00 0.00 2.74
400 407 3.496130 GTGCTTATAGTCGTCGCTAGGTA 59.504 47.826 0.00 0.00 0.00 3.08
410 417 3.794028 GCTCACTTCAGTGCTTATAGTCG 59.206 47.826 1.74 0.00 45.25 4.18
414 421 5.405935 TTCAGCTCACTTCAGTGCTTATA 57.594 39.130 1.74 0.00 45.25 0.98
416 423 3.555795 CCTTCAGCTCACTTCAGTGCTTA 60.556 47.826 1.74 0.00 45.25 3.09
424 431 0.871057 GCACACCTTCAGCTCACTTC 59.129 55.000 0.00 0.00 0.00 3.01
433 440 2.739609 CGATGATAGCAGCACACCTTCA 60.740 50.000 0.00 0.00 0.00 3.02
439 446 1.227645 GGGCGATGATAGCAGCACA 60.228 57.895 0.00 0.00 36.08 4.57
440 447 1.963338 GGGGCGATGATAGCAGCAC 60.963 63.158 0.00 0.00 36.08 4.40
441 448 2.104572 GAGGGGCGATGATAGCAGCA 62.105 60.000 0.00 0.00 36.08 4.41
444 451 0.837691 ATGGAGGGGCGATGATAGCA 60.838 55.000 0.00 0.00 36.08 3.49
448 455 1.228367 GCAATGGAGGGGCGATGAT 60.228 57.895 0.00 0.00 0.00 2.45
462 469 5.657474 CACTTAATTCAGAATGCCAGCAAT 58.343 37.500 0.00 0.00 34.76 3.56
464 471 3.119388 GCACTTAATTCAGAATGCCAGCA 60.119 43.478 0.00 0.00 34.76 4.41
465 472 3.119388 TGCACTTAATTCAGAATGCCAGC 60.119 43.478 0.00 0.00 34.76 4.85
467 474 4.334552 TCTGCACTTAATTCAGAATGCCA 58.665 39.130 0.00 0.00 34.30 4.92
482 489 5.883685 TCCAGAAATGATATCTCTGCACT 57.116 39.130 12.75 0.34 36.14 4.40
494 501 8.328758 AGATTTGTACACCTAATCCAGAAATGA 58.671 33.333 12.93 0.00 0.00 2.57
526 533 2.431782 AGTGCAGGCAAAACATCAAACT 59.568 40.909 0.00 0.00 0.00 2.66
529 536 1.538634 GCAGTGCAGGCAAAACATCAA 60.539 47.619 11.09 0.00 0.00 2.57
532 539 1.368579 GGCAGTGCAGGCAAAACAT 59.631 52.632 18.61 0.00 0.00 2.71
574 581 4.328440 CGCTCAAAGTATATATGGCTGAGC 59.672 45.833 20.21 20.21 46.83 4.26
575 582 4.867047 CCGCTCAAAGTATATATGGCTGAG 59.133 45.833 0.00 4.00 33.54 3.35
576 583 4.526650 TCCGCTCAAAGTATATATGGCTGA 59.473 41.667 0.00 0.00 0.00 4.26
577 584 4.820897 TCCGCTCAAAGTATATATGGCTG 58.179 43.478 0.00 0.00 0.00 4.85
578 585 5.483685 TTCCGCTCAAAGTATATATGGCT 57.516 39.130 0.00 0.00 0.00 4.75
579 586 6.371548 TCAATTCCGCTCAAAGTATATATGGC 59.628 38.462 0.00 0.00 0.00 4.40
580 587 7.604164 ACTCAATTCCGCTCAAAGTATATATGG 59.396 37.037 0.00 0.00 0.00 2.74
581 588 8.438513 CACTCAATTCCGCTCAAAGTATATATG 58.561 37.037 0.00 0.00 0.00 1.78
582 589 7.604164 CCACTCAATTCCGCTCAAAGTATATAT 59.396 37.037 0.00 0.00 0.00 0.86
583 590 6.929049 CCACTCAATTCCGCTCAAAGTATATA 59.071 38.462 0.00 0.00 0.00 0.86
584 591 5.760253 CCACTCAATTCCGCTCAAAGTATAT 59.240 40.000 0.00 0.00 0.00 0.86
585 592 5.116180 CCACTCAATTCCGCTCAAAGTATA 58.884 41.667 0.00 0.00 0.00 1.47
586 593 3.941483 CCACTCAATTCCGCTCAAAGTAT 59.059 43.478 0.00 0.00 0.00 2.12
587 594 3.334691 CCACTCAATTCCGCTCAAAGTA 58.665 45.455 0.00 0.00 0.00 2.24
588 595 2.154462 CCACTCAATTCCGCTCAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
589 596 1.470098 CCCACTCAATTCCGCTCAAAG 59.530 52.381 0.00 0.00 0.00 2.77
590 597 1.202879 ACCCACTCAATTCCGCTCAAA 60.203 47.619 0.00 0.00 0.00 2.69
591 598 0.400213 ACCCACTCAATTCCGCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
592 599 0.321564 CACCCACTCAATTCCGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
593 600 0.036388 TCACCCACTCAATTCCGCTC 60.036 55.000 0.00 0.00 0.00 5.03
594 601 0.321653 GTCACCCACTCAATTCCGCT 60.322 55.000 0.00 0.00 0.00 5.52
595 602 0.605319 TGTCACCCACTCAATTCCGC 60.605 55.000 0.00 0.00 0.00 5.54
676 716 3.402628 TTTGAGAGAGGGAAAAGGACG 57.597 47.619 0.00 0.00 0.00 4.79
709 749 2.613133 GCACGGAGGAGTAGTACACTAG 59.387 54.545 2.52 0.00 37.72 2.57
743 783 4.151157 GCTCCGTCTTTGTTTTATGTACGT 59.849 41.667 0.00 0.00 0.00 3.57
852 892 4.794648 CTTCATTCGGGGCCGGCA 62.795 66.667 30.85 7.48 40.25 5.69
865 920 0.895100 GCACATGAACTGGGGCTTCA 60.895 55.000 0.00 0.00 32.24 3.02
899 963 4.343239 ACTGTCCTATATAACCGTTGGTCC 59.657 45.833 0.00 0.00 33.12 4.46
900 964 5.068198 TGACTGTCCTATATAACCGTTGGTC 59.932 44.000 5.17 0.00 33.12 4.02
902 966 5.524971 TGACTGTCCTATATAACCGTTGG 57.475 43.478 5.17 0.00 0.00 3.77
909 973 4.500887 GCGGTGCTTGACTGTCCTATATAA 60.501 45.833 5.17 0.00 32.87 0.98
978 1051 2.424246 GAGGAAACGAGGAGGAGTACTG 59.576 54.545 0.00 0.00 0.00 2.74
982 1055 1.827969 CATGAGGAAACGAGGAGGAGT 59.172 52.381 0.00 0.00 0.00 3.85
1005 1091 0.599204 CGTTGCTCTGGTGTACCGTT 60.599 55.000 0.00 0.00 39.43 4.44
1269 1532 1.675310 CCGGATGCTGTTCTTGGCA 60.675 57.895 0.00 0.00 42.80 4.92
1549 1826 0.667792 GAGAAGAGCGTGAAAGCGGT 60.668 55.000 0.00 0.00 45.63 5.68
1561 2240 2.713895 TGAACGCACAGAGAGAAGAG 57.286 50.000 0.00 0.00 0.00 2.85
1562 2241 3.667497 ATTGAACGCACAGAGAGAAGA 57.333 42.857 0.00 0.00 0.00 2.87
1563 2242 4.739046 AAATTGAACGCACAGAGAGAAG 57.261 40.909 0.00 0.00 0.00 2.85
1564 2243 5.499139 AAAAATTGAACGCACAGAGAGAA 57.501 34.783 0.00 0.00 0.00 2.87
1598 2292 4.205588 GCGCTGTTTGTTTTTGTAAGGTAC 59.794 41.667 0.00 0.00 0.00 3.34
1600 2297 3.119280 AGCGCTGTTTGTTTTTGTAAGGT 60.119 39.130 10.39 0.00 0.00 3.50
1601 2298 3.242712 CAGCGCTGTTTGTTTTTGTAAGG 59.757 43.478 29.24 0.00 0.00 2.69
1606 2311 2.216263 GCTACAGCGCTGTTTGTTTTTG 59.784 45.455 44.31 23.95 41.83 2.44
1724 2451 2.399356 GCCGACAGTTTGGGCTAGC 61.399 63.158 6.04 6.04 43.52 3.42
1738 2465 2.817834 GCAGTATGTTGGCGCCGA 60.818 61.111 23.90 19.26 39.31 5.54
1907 2634 3.127203 CGCACGGATTGTTTGGGTTTATA 59.873 43.478 0.00 0.00 0.00 0.98
1992 2735 8.291191 TGCAATCCATATATGTTCAAACAGAA 57.709 30.769 11.73 0.00 43.04 3.02
1994 2737 9.537192 AAATGCAATCCATATATGTTCAAACAG 57.463 29.630 11.73 0.00 36.53 3.16
2045 2802 1.227263 CCACCTCCGCGACCTAATG 60.227 63.158 8.23 0.00 0.00 1.90
2110 2867 2.113986 GCACTGCCCAGAACCAGT 59.886 61.111 1.69 0.00 42.67 4.00
2125 2882 0.190566 CCATGGGGATAAATGGGGCA 59.809 55.000 2.85 0.00 39.82 5.36
2275 3032 7.050377 TCATATGAAAGAATGACAGGGAGTTC 58.950 38.462 1.98 0.00 0.00 3.01
2360 3122 7.583230 AGGTAATTCGTAATCGATGTAGAGAC 58.417 38.462 0.00 0.00 45.65 3.36
2371 3133 7.975866 TGAGACGTTAAGGTAATTCGTAATC 57.024 36.000 0.00 0.00 34.93 1.75
2425 3187 3.260884 TGCACTTCTCTAGGTACCAAAGG 59.739 47.826 15.94 5.69 0.00 3.11
2439 3201 1.355381 TGGGTTCATCCATGCACTTCT 59.645 47.619 0.00 0.00 38.11 2.85
2440 3202 1.474077 GTGGGTTCATCCATGCACTTC 59.526 52.381 0.00 0.00 39.26 3.01
2441 3203 1.076024 AGTGGGTTCATCCATGCACTT 59.924 47.619 0.00 0.00 39.26 3.16
2442 3204 0.700564 AGTGGGTTCATCCATGCACT 59.299 50.000 0.00 0.00 39.26 4.40
2443 3205 1.474077 GAAGTGGGTTCATCCATGCAC 59.526 52.381 0.00 0.00 39.26 4.57
2444 3206 1.616725 GGAAGTGGGTTCATCCATGCA 60.617 52.381 0.00 0.00 39.26 3.96
2445 3207 1.106285 GGAAGTGGGTTCATCCATGC 58.894 55.000 0.00 0.00 39.26 4.06
2446 3208 2.814805 AGGAAGTGGGTTCATCCATG 57.185 50.000 0.00 0.00 39.26 3.66
2447 3209 2.922283 AGAAGGAAGTGGGTTCATCCAT 59.078 45.455 0.00 0.00 39.26 3.41
2448 3210 2.348472 AGAAGGAAGTGGGTTCATCCA 58.652 47.619 0.00 0.00 36.82 3.41
2449 3211 3.084786 CAAGAAGGAAGTGGGTTCATCC 58.915 50.000 0.00 0.00 36.82 3.51
2450 3212 2.489722 GCAAGAAGGAAGTGGGTTCATC 59.510 50.000 0.00 0.00 36.82 2.92
2451 3213 2.519013 GCAAGAAGGAAGTGGGTTCAT 58.481 47.619 0.00 0.00 36.82 2.57
2452 3214 1.478654 GGCAAGAAGGAAGTGGGTTCA 60.479 52.381 0.00 0.00 36.82 3.18
2453 3215 1.248486 GGCAAGAAGGAAGTGGGTTC 58.752 55.000 0.00 0.00 0.00 3.62
2454 3216 0.178961 GGGCAAGAAGGAAGTGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
2455 3217 1.068352 AGGGCAAGAAGGAAGTGGGT 61.068 55.000 0.00 0.00 0.00 4.51
2456 3218 0.991920 TAGGGCAAGAAGGAAGTGGG 59.008 55.000 0.00 0.00 0.00 4.61
2457 3219 3.372440 AATAGGGCAAGAAGGAAGTGG 57.628 47.619 0.00 0.00 0.00 4.00
2458 3220 4.619160 GCAAAATAGGGCAAGAAGGAAGTG 60.619 45.833 0.00 0.00 0.00 3.16
2459 3221 3.511540 GCAAAATAGGGCAAGAAGGAAGT 59.488 43.478 0.00 0.00 0.00 3.01
2460 3222 3.766051 AGCAAAATAGGGCAAGAAGGAAG 59.234 43.478 0.00 0.00 0.00 3.46
2461 3223 3.778265 AGCAAAATAGGGCAAGAAGGAA 58.222 40.909 0.00 0.00 0.00 3.36
2483 3245 0.473755 ACATGCAACACAGGGACAGA 59.526 50.000 0.00 0.00 33.23 3.41
2538 3315 9.663904 TCGACTTTGAAACTTAATGAAAGATTG 57.336 29.630 0.00 0.00 38.67 2.67
2540 3317 9.884465 CTTCGACTTTGAAACTTAATGAAAGAT 57.116 29.630 0.00 0.00 38.67 2.40
2541 3318 8.889717 ACTTCGACTTTGAAACTTAATGAAAGA 58.110 29.630 0.00 0.00 38.67 2.52
2542 3319 9.159470 GACTTCGACTTTGAAACTTAATGAAAG 57.841 33.333 0.00 0.00 41.33 2.62
2543 3320 8.126700 GGACTTCGACTTTGAAACTTAATGAAA 58.873 33.333 0.00 0.00 0.00 2.69
2544 3321 7.281324 TGGACTTCGACTTTGAAACTTAATGAA 59.719 33.333 0.00 0.00 0.00 2.57
2545 3322 6.764085 TGGACTTCGACTTTGAAACTTAATGA 59.236 34.615 0.00 0.00 0.00 2.57
2546 3323 6.954944 TGGACTTCGACTTTGAAACTTAATG 58.045 36.000 0.00 0.00 0.00 1.90
2556 3333 4.378770 CCATCATGTTGGACTTCGACTTTG 60.379 45.833 16.58 0.00 39.25 2.77
2591 3368 6.677913 ACAAAGGTGATAACTACAAATGTGC 58.322 36.000 0.00 0.00 0.00 4.57
2766 3991 8.276252 ACAAAATGGTATACTCACAATACACC 57.724 34.615 2.25 0.00 32.49 4.16
2843 4070 9.388506 AGAACAATAGTGTCAAGGATATCAAAG 57.611 33.333 4.83 0.00 36.80 2.77
3097 4368 7.652105 GGTCCAAAATTAGTCCTGAAGAAAAAC 59.348 37.037 0.00 0.00 0.00 2.43
3103 4374 3.127030 GCGGTCCAAAATTAGTCCTGAAG 59.873 47.826 0.00 0.00 0.00 3.02
3104 4375 3.078837 GCGGTCCAAAATTAGTCCTGAA 58.921 45.455 0.00 0.00 0.00 3.02
3197 4468 8.642908 ATTTCATGTCTCGTCGTTATTATTCA 57.357 30.769 0.00 0.00 0.00 2.57
3207 4478 7.574481 GTCGTAAAATAATTTCATGTCTCGTCG 59.426 37.037 0.00 0.00 0.00 5.12
3451 4730 8.960591 ACCTGGACATAAAATTACTGATTCTTG 58.039 33.333 0.00 0.00 0.00 3.02
3682 5475 6.781138 TGCGGTTATACATTTTCTGACAATC 58.219 36.000 0.00 0.00 0.00 2.67
3728 5523 3.980134 TGCATGTCATGTTAGTTTTTGCG 59.020 39.130 14.26 0.00 0.00 4.85
3749 5545 4.549458 GGTCATGAAAACAAGGACACATG 58.451 43.478 0.00 0.00 37.18 3.21
3751 5547 2.955660 GGGTCATGAAAACAAGGACACA 59.044 45.455 0.00 0.00 32.29 3.72
3821 5627 3.066291 ACCATTCGGAACATGTGCTTA 57.934 42.857 3.21 0.00 35.59 3.09
3883 5689 7.035612 AGTTTTGTCTTTGAGAATTGTGGAAC 58.964 34.615 0.00 0.00 37.35 3.62
3993 5799 5.414454 AGATGGAACGCAAGCAAAAGTAATA 59.586 36.000 0.00 0.00 45.62 0.98
4024 5830 4.392921 TGATCCTTTCGAGACCATCTTC 57.607 45.455 0.00 0.00 0.00 2.87
4053 5859 7.645058 ATTCTTCTTCTTGTTCCTTTGACAA 57.355 32.000 0.00 0.00 35.81 3.18
4153 5988 4.445453 TGGATAGCTACAACAGAGCATTG 58.555 43.478 0.00 0.00 42.69 2.82
4158 5993 5.330455 TGACTTGGATAGCTACAACAGAG 57.670 43.478 0.00 0.00 0.00 3.35
4171 6007 5.281314 AGAAGTAGGGTACATGACTTGGAT 58.719 41.667 0.00 0.00 32.37 3.41
4193 6029 4.389687 GGCAACAAGGCAAAATACATCAAG 59.610 41.667 0.00 0.00 43.51 3.02
4205 6041 1.114119 TGATGCAAGGCAACAAGGCA 61.114 50.000 0.00 0.00 43.62 4.75
4228 6064 9.624697 GATGCACACAACAATCTTTATTAAGAA 57.375 29.630 0.00 0.00 43.32 2.52
4229 6065 8.791675 TGATGCACACAACAATCTTTATTAAGA 58.208 29.630 0.00 0.00 44.16 2.10
4230 6066 8.969121 TGATGCACACAACAATCTTTATTAAG 57.031 30.769 0.00 0.00 0.00 1.85
4242 6078 2.565046 TCATCCTGATGCACACAACA 57.435 45.000 2.18 0.00 38.65 3.33
4380 6216 8.672823 TTCTATTCATCATGTTTCATCCAGAG 57.327 34.615 0.00 0.00 0.00 3.35
4514 6350 7.169982 CGAACTAGCATCAGTATAAAAGGGAAG 59.830 40.741 0.00 0.00 0.00 3.46
4528 6364 1.741145 TCACGTAGCGAACTAGCATCA 59.259 47.619 0.00 0.00 40.15 3.07
4529 6365 2.470196 TCACGTAGCGAACTAGCATC 57.530 50.000 0.00 0.00 40.15 3.91
4534 6370 1.470098 GTCCCTTCACGTAGCGAACTA 59.530 52.381 0.00 0.00 0.00 2.24
4539 6375 0.381089 CTAGGTCCCTTCACGTAGCG 59.619 60.000 0.00 0.00 30.27 4.26
4564 6400 1.159664 CATCCCCTCCCCCTCTAGG 59.840 68.421 0.00 0.00 0.00 3.02
4566 6402 1.264869 ATTCATCCCCTCCCCCTCTA 58.735 55.000 0.00 0.00 0.00 2.43
4567 6403 1.153132 CTATTCATCCCCTCCCCCTCT 59.847 57.143 0.00 0.00 0.00 3.69
4568 6404 1.152271 TCTATTCATCCCCTCCCCCTC 59.848 57.143 0.00 0.00 0.00 4.30
4569 6405 1.132365 GTCTATTCATCCCCTCCCCCT 60.132 57.143 0.00 0.00 0.00 4.79
4575 6415 2.844348 ACAAACCGTCTATTCATCCCCT 59.156 45.455 0.00 0.00 0.00 4.79
4580 6420 6.817765 ATTGTTCACAAACCGTCTATTCAT 57.182 33.333 0.00 0.00 39.55 2.57
4588 6428 6.385649 AATCTACAATTGTTCACAAACCGT 57.614 33.333 17.78 0.00 39.55 4.83
4606 6446 9.958180 TTCCACATCAAGATAAAGTCAAATCTA 57.042 29.630 0.00 0.00 32.17 1.98
4624 6464 9.530633 AGTATTCGACTAGTTTAATTCCACATC 57.469 33.333 0.00 0.00 36.27 3.06
4694 6535 8.713971 TGTGTACTCATTATGATTGTATCCCTT 58.286 33.333 0.00 0.00 0.00 3.95
4702 6543 5.234329 GTCGGGTGTGTACTCATTATGATTG 59.766 44.000 0.24 0.00 0.00 2.67
4721 6562 1.586422 CTGGTTATGCAGATGTCGGG 58.414 55.000 0.00 0.00 0.00 5.14
4747 6588 0.172352 GTGGGTGTGTGTTGGTTGTG 59.828 55.000 0.00 0.00 0.00 3.33
4765 6616 2.733218 CGGTGCGATCGTGTGTGT 60.733 61.111 17.81 0.00 0.00 3.72
4766 6617 2.430075 TCGGTGCGATCGTGTGTG 60.430 61.111 17.81 3.68 0.00 3.82
4767 6618 2.430244 GTCGGTGCGATCGTGTGT 60.430 61.111 17.81 0.00 38.42 3.72
4768 6619 1.553195 TTTGTCGGTGCGATCGTGTG 61.553 55.000 17.81 4.77 38.42 3.82
4769 6620 1.282248 CTTTGTCGGTGCGATCGTGT 61.282 55.000 17.81 0.00 38.42 4.49
4770 6621 1.006825 TCTTTGTCGGTGCGATCGTG 61.007 55.000 17.81 4.78 38.42 4.35
4771 6622 0.732880 CTCTTTGTCGGTGCGATCGT 60.733 55.000 17.81 0.00 38.42 3.73
4772 6623 1.991430 CTCTTTGTCGGTGCGATCG 59.009 57.895 11.69 11.69 38.42 3.69
4777 6628 0.663153 ACTTTGCTCTTTGTCGGTGC 59.337 50.000 0.00 0.00 0.00 5.01
4817 6668 0.815615 CATTTCTACCTCCGCCCAGC 60.816 60.000 0.00 0.00 0.00 4.85
4820 6671 2.413310 TTTCATTTCTACCTCCGCCC 57.587 50.000 0.00 0.00 0.00 6.13
4829 6680 7.278875 ACATTGCTTTGGGTTTTTCATTTCTA 58.721 30.769 0.00 0.00 0.00 2.10
4858 6709 9.750125 GTGACTATTGTATGTCATCAATCACTA 57.250 33.333 11.43 0.00 43.75 2.74
4868 6719 6.544928 ACTGATGGTGACTATTGTATGTCA 57.455 37.500 0.00 0.00 40.39 3.58
4941 6792 4.065088 CGTTCCTTTCTTGGAGACATCAA 58.935 43.478 0.00 0.00 42.32 2.57
4947 6798 1.684983 ACGTCGTTCCTTTCTTGGAGA 59.315 47.619 0.00 0.00 37.43 3.71
4957 6808 2.244651 GCACTTGCACGTCGTTCCT 61.245 57.895 0.00 0.00 41.59 3.36
4979 6830 0.398696 TGTGCTACGTTCCCCAACAT 59.601 50.000 0.00 0.00 32.14 2.71
4980 6831 0.180642 TTGTGCTACGTTCCCCAACA 59.819 50.000 0.00 0.00 32.14 3.33
4981 6832 1.310904 TTTGTGCTACGTTCCCCAAC 58.689 50.000 0.00 0.00 0.00 3.77
4982 6833 2.279935 ATTTGTGCTACGTTCCCCAA 57.720 45.000 0.00 0.00 0.00 4.12
4983 6834 2.156098 GAATTTGTGCTACGTTCCCCA 58.844 47.619 0.00 0.00 0.00 4.96
4984 6835 2.156098 TGAATTTGTGCTACGTTCCCC 58.844 47.619 0.00 0.00 0.00 4.81
4985 6836 3.907894 TTGAATTTGTGCTACGTTCCC 57.092 42.857 0.00 0.00 0.00 3.97
4986 6837 6.763303 AATTTTGAATTTGTGCTACGTTCC 57.237 33.333 0.00 0.00 0.00 3.62
4987 6838 8.539674 AGAAAATTTTGAATTTGTGCTACGTTC 58.460 29.630 8.47 0.00 0.00 3.95
4988 6839 8.419076 AGAAAATTTTGAATTTGTGCTACGTT 57.581 26.923 8.47 0.00 0.00 3.99
4989 6840 8.964150 GTAGAAAATTTTGAATTTGTGCTACGT 58.036 29.630 8.47 0.00 0.00 3.57
4990 6841 8.147172 CGTAGAAAATTTTGAATTTGTGCTACG 58.853 33.333 23.13 23.13 37.66 3.51
4991 6842 7.944649 GCGTAGAAAATTTTGAATTTGTGCTAC 59.055 33.333 8.47 8.90 0.00 3.58
4992 6843 7.649705 TGCGTAGAAAATTTTGAATTTGTGCTA 59.350 29.630 8.47 0.00 0.00 3.49
4993 6844 6.478344 TGCGTAGAAAATTTTGAATTTGTGCT 59.522 30.769 8.47 0.00 0.00 4.40
4994 6845 6.644775 TGCGTAGAAAATTTTGAATTTGTGC 58.355 32.000 8.47 2.49 0.00 4.57
4995 6846 8.486383 TGATGCGTAGAAAATTTTGAATTTGTG 58.514 29.630 8.47 0.00 0.00 3.33
4996 6847 8.487176 GTGATGCGTAGAAAATTTTGAATTTGT 58.513 29.630 8.47 0.00 0.00 2.83
4997 6848 7.951565 GGTGATGCGTAGAAAATTTTGAATTTG 59.048 33.333 8.47 0.00 0.00 2.32
4998 6849 7.655328 TGGTGATGCGTAGAAAATTTTGAATTT 59.345 29.630 8.47 0.00 0.00 1.82
4999 6850 7.151308 TGGTGATGCGTAGAAAATTTTGAATT 58.849 30.769 8.47 0.00 0.00 2.17
5000 6851 6.686630 TGGTGATGCGTAGAAAATTTTGAAT 58.313 32.000 8.47 0.00 0.00 2.57
5001 6852 6.078202 TGGTGATGCGTAGAAAATTTTGAA 57.922 33.333 8.47 0.00 0.00 2.69
5002 6853 5.697473 TGGTGATGCGTAGAAAATTTTGA 57.303 34.783 8.47 0.00 0.00 2.69
5003 6854 6.148948 TCTTGGTGATGCGTAGAAAATTTTG 58.851 36.000 8.47 0.00 0.00 2.44
5004 6855 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
5005 6856 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
5006 6857 6.515272 AATCTTGGTGATGCGTAGAAAATT 57.485 33.333 0.00 0.00 35.21 1.82
5007 6858 7.624360 TTAATCTTGGTGATGCGTAGAAAAT 57.376 32.000 0.00 0.00 35.21 1.82
5008 6859 7.552687 AGATTAATCTTGGTGATGCGTAGAAAA 59.447 33.333 12.37 0.00 35.21 2.29
5009 6860 7.047891 AGATTAATCTTGGTGATGCGTAGAAA 58.952 34.615 12.37 0.00 35.21 2.52
5010 6861 6.582636 AGATTAATCTTGGTGATGCGTAGAA 58.417 36.000 12.37 0.00 35.21 2.10
5011 6862 6.161855 AGATTAATCTTGGTGATGCGTAGA 57.838 37.500 12.37 0.00 35.21 2.59
5012 6863 7.063898 CCATAGATTAATCTTGGTGATGCGTAG 59.936 40.741 22.60 4.55 38.32 3.51
5013 6864 6.873605 CCATAGATTAATCTTGGTGATGCGTA 59.126 38.462 22.60 1.16 38.32 4.42
5014 6865 5.702670 CCATAGATTAATCTTGGTGATGCGT 59.297 40.000 22.60 0.00 38.32 5.24
5015 6866 5.934043 TCCATAGATTAATCTTGGTGATGCG 59.066 40.000 27.66 17.75 38.32 4.73
5016 6867 7.164122 TCTCCATAGATTAATCTTGGTGATGC 58.836 38.462 27.66 2.41 38.32 3.91
5031 6882 7.508636 TCTCTTGTTGCTAGAATCTCCATAGAT 59.491 37.037 0.00 0.00 44.67 1.98
5032 6883 6.836007 TCTCTTGTTGCTAGAATCTCCATAGA 59.164 38.462 0.00 0.00 35.80 1.98
5033 6884 7.048629 TCTCTTGTTGCTAGAATCTCCATAG 57.951 40.000 0.00 0.00 0.00 2.23
5034 6885 6.041409 CCTCTCTTGTTGCTAGAATCTCCATA 59.959 42.308 0.00 0.00 0.00 2.74
5035 6886 5.163322 CCTCTCTTGTTGCTAGAATCTCCAT 60.163 44.000 0.00 0.00 0.00 3.41
5036 6887 4.161189 CCTCTCTTGTTGCTAGAATCTCCA 59.839 45.833 0.00 0.00 0.00 3.86
5037 6888 4.442753 CCCTCTCTTGTTGCTAGAATCTCC 60.443 50.000 0.00 0.00 0.00 3.71
5038 6889 4.404073 TCCCTCTCTTGTTGCTAGAATCTC 59.596 45.833 0.00 0.00 0.00 2.75
5039 6890 4.357325 TCCCTCTCTTGTTGCTAGAATCT 58.643 43.478 0.00 0.00 0.00 2.40
5040 6891 4.404073 TCTCCCTCTCTTGTTGCTAGAATC 59.596 45.833 0.00 0.00 0.00 2.52
5041 6892 4.357325 TCTCCCTCTCTTGTTGCTAGAAT 58.643 43.478 0.00 0.00 0.00 2.40
5042 6893 3.766591 CTCTCCCTCTCTTGTTGCTAGAA 59.233 47.826 0.00 0.00 0.00 2.10
5043 6894 3.360867 CTCTCCCTCTCTTGTTGCTAGA 58.639 50.000 0.00 0.00 0.00 2.43
5044 6895 2.430332 CCTCTCCCTCTCTTGTTGCTAG 59.570 54.545 0.00 0.00 0.00 3.42
5045 6896 2.043115 TCCTCTCCCTCTCTTGTTGCTA 59.957 50.000 0.00 0.00 0.00 3.49
5046 6897 1.203237 TCCTCTCCCTCTCTTGTTGCT 60.203 52.381 0.00 0.00 0.00 3.91
5047 6898 1.270907 TCCTCTCCCTCTCTTGTTGC 58.729 55.000 0.00 0.00 0.00 4.17
5048 6899 3.102972 TCATCCTCTCCCTCTCTTGTTG 58.897 50.000 0.00 0.00 0.00 3.33
5049 6900 3.012274 TCTCATCCTCTCCCTCTCTTGTT 59.988 47.826 0.00 0.00 0.00 2.83
5050 6901 2.584965 TCTCATCCTCTCCCTCTCTTGT 59.415 50.000 0.00 0.00 0.00 3.16
5051 6902 3.311167 TCTCATCCTCTCCCTCTCTTG 57.689 52.381 0.00 0.00 0.00 3.02
5052 6903 4.170647 AGATTCTCATCCTCTCCCTCTCTT 59.829 45.833 0.00 0.00 0.00 2.85
5053 6904 3.728990 AGATTCTCATCCTCTCCCTCTCT 59.271 47.826 0.00 0.00 0.00 3.10
5054 6905 4.118168 AGATTCTCATCCTCTCCCTCTC 57.882 50.000 0.00 0.00 0.00 3.20
5055 6906 4.078688 TGAAGATTCTCATCCTCTCCCTCT 60.079 45.833 0.00 0.00 0.00 3.69
5056 6907 4.222336 TGAAGATTCTCATCCTCTCCCTC 58.778 47.826 0.00 0.00 0.00 4.30
5057 6908 4.277788 TGAAGATTCTCATCCTCTCCCT 57.722 45.455 0.00 0.00 0.00 4.20
5058 6909 5.046663 GGTATGAAGATTCTCATCCTCTCCC 60.047 48.000 3.01 0.00 37.27 4.30
5059 6910 5.779771 AGGTATGAAGATTCTCATCCTCTCC 59.220 44.000 3.01 0.00 37.27 3.71
5060 6911 6.916360 AGGTATGAAGATTCTCATCCTCTC 57.084 41.667 3.01 0.00 37.27 3.20
5061 6912 7.346698 TCAAAGGTATGAAGATTCTCATCCTCT 59.653 37.037 12.12 0.00 37.27 3.69
5062 6913 7.504403 TCAAAGGTATGAAGATTCTCATCCTC 58.496 38.462 12.12 0.00 37.27 3.71
5063 6914 7.443302 TCAAAGGTATGAAGATTCTCATCCT 57.557 36.000 3.01 6.59 37.27 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.